CmaCh04G017740 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G017740
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	RING/U-box superfamily protein
Location	Cma_Chr04 : 8919039 .. 8920588 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCAAAACCTATTTCTTCTTTTTCTCTTCGTTTTCTTCTGCAACTCAAGGCAAAACCCTGAAACGGATTAGACTTCATTTTGGGAGGAAAGAAAAAAGCTTCAAATTTTGTGGATTTTTGAAGATGGGTCTCTCGAATTTCCCCCCTTCAGCTGAAGGAGTGTTGCTGTTACCTGTTCTTGTGATGAACACTGTAATGTCGATGGCGTTTTTGAAGAACTTGGTGAGATCTGTGATACAAATGATGAGTGCGAGTGGGAATCCTTCGAGTTCTGAGGAAGAATTCGACTGGGAAAATGGAAGAGAAAGAAGAATCTCAATTACCCAGTTCAAATCTTTGGGTCAAAGCTTCAATAATGGCGGAACAGAGAAGGGCTCTGCTTCGAGGTGTATCATGGCAGAGTGCTGTGTTTGTCTTTGTGGGTTTGAAGCTGATGAGGAAGTTAGTGAGTTGTCTTGCAAGCACTTTTTTCATAAAGCTTGTCTTTCTAAGTGGTTTGATAATAAGCACATTACTTGCCCTCTTTGTCGTTCCATTGAGTAGTGTTCTTCATCATCCACTGCTAAATTGCAGCTTTTTGAAGCATACTTTTGTTTTAGGGTTTTTTTTTTTTTTCCTTCTTGTTCTTCACATTTCTTCTCTTATCGCTCTCCATATCATCACTTTCCCTTTATATATATATATGTGTATTGTATAATGGAAGATTAGGCATAGGAGAAGTGTTCTTCAGATAAATCCTGCACTGTTCTATTAAGCTCCTGCTCTAACTCAAAGCACCCAGAAGATCAATTTAGAATTCAAAAGGATTCATCAGCAAAAGCTAAGAACACAGAGCTAAGAACAGTTAAAGCAGGGAGCTTTAAATGGCTTGGAGCAGCTGGGCAGTCACAAAACTGGCAATTCCAATGTGTGGGACTCTGTTCTTCAGTGAGAAATCTAGTTCAGAAGTCATTCAACACAAGAAATGGTGTGTGTGGTGTGCAAAATGATGACCAGAAATTCAGCTATGGGCGTTGGGACACGACCATCGTTTGTATCAAATGTTTGTTACTTTTCTCTTTCTATCACAAAGATTTGAAACTTGTCTGTACTCGTTAGATTGAAGCTTGAAGAATGATCTGCAATGAACCAGATGTAACTCTTTTCTTGTATTTATTTGATATACCAAATATGGAGGCAATTTAATTCTTCCACCGGTTATATGCTTCATTTCTTAACCTTATGCCAAAGATCCAATCTTTCTGGGACCCAAAAATTCTTGGCCACTCATTTCAGGCAGTAAGTTAAATGAAGATCTTGATATGAGTCTGACCCAATGGGATCGAAATTAGGAGGGAGAGAGAGATTCAGACAGACCTGAAACCTGAAACCTTTGGCAAATTAGAAAGAAATAAGAACAGTTATATATGAAACCCACAAACGGAGAATTCTGAGTCAAAAATAACTTTACCATTGGATATGATAATGATACAGAACCAGGAGCTAACAGTTTCTTTCAGCTAGCTAACAGTTTATTACAGAACCAGAAGACAGAACGAGATCAATAG

mRNA sequence

ATGCCCAAAACCTATTTCTTCTTTTTCTCTTCGTTTTCTTCTGCAACTCAAGGCAAAACCCTGAAACGGATTAGACTTCATTTTGGGAGGAAAGAAAAAAGCTTCAAATTTTGTGGATTTTTGAAGATGGGTCTCTCGAATTTCCCCCCTTCAGCTGAAGGAGTGTTGCTGTTACCTGTTCTTGTGATGAACACTGTAATGTCGATGGCGTTTTTGAAGAACTTGGTGAGATCTGTGATACAAATGATGAGTGCGAGTGGGAATCCTTCGAGTTCTGAGGAAGAATTCGACTGGGAAAATGGAAGAGAAAGAAGAATCTCAATTACCCAGTTCAAATCTTTGGGTCAAAGCTTCAATAATGGCGGAACAGAGAAGGGCTCTGCTTCGAGGTGTATCATGGCAGAGTGCTGTGTTTGTCTTTGTGGGTTTGAAGCTGATGAGGAACACCCAGAAGATCAATTTAGAATTCAAAAGGATTCATCAGCAAAAGCTAAGAACACAGAGCTAAGAACAGTTAAAGCAGGGAGCTTTAAATGGCTTGGAGCAGCTGGGCAGTCACAAAACTGGCAATTCCAATGTGTGGGACTCTGTTCTTCAGTGAGAAATCTAGTTCAGAAGTCATTCAACACAAGAAATGAACCAGGAGCTAACAGTTTCTTTCAGCTAGCTAACAGTTTATTACAGAACCAGAAGACAGAACGAGATCAATAG

Coding sequence (CDS)

ATGCCCAAAACCTATTTCTTCTTTTTCTCTTCGTTTTCTTCTGCAACTCAAGGCAAAACCCTGAAACGGATTAGACTTCATTTTGGGAGGAAAGAAAAAAGCTTCAAATTTTGTGGATTTTTGAAGATGGGTCTCTCGAATTTCCCCCCTTCAGCTGAAGGAGTGTTGCTGTTACCTGTTCTTGTGATGAACACTGTAATGTCGATGGCGTTTTTGAAGAACTTGGTGAGATCTGTGATACAAATGATGAGTGCGAGTGGGAATCCTTCGAGTTCTGAGGAAGAATTCGACTGGGAAAATGGAAGAGAAAGAAGAATCTCAATTACCCAGTTCAAATCTTTGGGTCAAAGCTTCAATAATGGCGGAACAGAGAAGGGCTCTGCTTCGAGGTGTATCATGGCAGAGTGCTGTGTTTGTCTTTGTGGGTTTGAAGCTGATGAGGAACACCCAGAAGATCAATTTAGAATTCAAAAGGATTCATCAGCAAAAGCTAAGAACACAGAGCTAAGAACAGTTAAAGCAGGGAGCTTTAAATGGCTTGGAGCAGCTGGGCAGTCACAAAACTGGCAATTCCAATGTGTGGGACTCTGTTCTTCAGTGAGAAATCTAGTTCAGAAGTCATTCAACACAAGAAATGAACCAGGAGCTAACAGTTTCTTTCAGCTAGCTAACAGTTTATTACAGAACCAGAAGACAGAACGAGATCAATAG

Protein sequence

MPKTYFFFFSSFSSATQGKTLKRIRLHFGRKEKSFKFCGFLKMGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNPSSSEEEFDWENGRERRISITQFKSLGQSFNNGGTEKGSASRCIMAECCVCLCGFEADEEHPEDQFRIQKDSSAKAKNTELRTVKAGSFKWLGAAGQSQNWQFQCVGLCSSVRNLVQKSFNTRNEPGANSFFQLANSLLQNQKTERDQ

Homology

[Close]

BLAST of CmaCh04G017740 vs. TrEMBL
Match: A0A0A0KTI8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G598060 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 4.8e-42
Identity = 94/109 (86.24%), Postives = 98/109 (89.91%), Query Frame = 1


Query: 43  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNPSSSEEEFDWENGR 102
           MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKN VRSVIQMMSASGN SSSEEE+DWEN R
Sbjct: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNFVRSVIQMMSASGNSSSSEEEYDWENRR 60

Query: 103 ERRISITQFKSLGQSFNNGGTEKGSASRCIMAECCVCLCGFEADEEHPE 152
           ERRISITQFK+LGQSF NG TE+   SRC+MAECCVCLC FEADEE  E
Sbjct: 61  ERRISITQFKTLGQSF-NGETEEEFVSRCVMAECCVCLCRFEADEEVSE 108

[Close]

BLAST of CmaCh04G017740 vs. TrEMBL
Match: A0A067JRV9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17849 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.6e-21
Identity = 65/112 (58.04%), Postives = 80/112 (71.43%), Query Frame = 1


Query: 43  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNPSSSEE---EFDWE 102
           MGLS+FP +AEGVL  P+LVMNTV+S+A LKN+VRS++Q++ A+  P   E+   EF  E
Sbjct: 1   MGLSSFPSAAEGVL--PILVMNTVLSVALLKNMVRSLLQVVGANWIPQDYEQDPDEFPRE 60

Query: 103 NGRERRISITQFKSLGQSFNNGGTEKGSASRCIMAECCVCLCGFEADEEHPE 152
           N R R ISITQFKSL    N GG+  G  SR  + ECCVCLCGFEA+EE  E
Sbjct: 61  NARMRTISITQFKSLTPHSNGGGSCSGG-SRGAIVECCVCLCGFEAEEEVSE 109

[Close]

BLAST of CmaCh04G017740 vs. TrEMBL
Match: A0A061E8K8_THECC (RING/U-box superfamily protein OS=Theobroma cacao GN=TCM_010559 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 2.3e-20
Identity = 68/115 (59.13%), Postives = 84/115 (73.04%), Query Frame = 1


Query: 43  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNPSSSEEE----FDW 102
           MGLSNFP +AEGVL  PVLVMNTV+S+A LKN+VRS++Q++ ASG+ SSS ++    +  
Sbjct: 1   MGLSNFPSAAEGVL--PVLVMNTVLSVALLKNMVRSLLQVVGASGSSSSSLDDESDGYPE 60

Query: 103 EN--GRERRISITQFKSLGQSFNNGGTEKGSASRCIMAECCVCLCGFEADEEHPE 152
           EN   RERRISITQFKSL  + +  G+  G A+     ECCVCLCGFEADEE  E
Sbjct: 61  ENIKARERRISITQFKSLCHTSDGSGS--GWAN---TVECCVCLCGFEADEEVSE 108

[Close]

BLAST of CmaCh04G017740 vs. TrEMBL
Match: A0A061E6T9_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_010558 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 2.3e-20
Identity = 69/126 (54.76%), Postives = 84/126 (66.67%), Query Frame = 1


Query: 43  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNPSSSEEE----FDW 102
           MGLSNFP +AEGVL  PVLVMNTV+S+A LKN+VRS++Q++ ASG+ SSS ++    +  
Sbjct: 1   MGLSNFPSAAEGVL--PVLVMNTVLSVALLKNMVRSLLQVVGASGSSSSSLDDESDGYPE 60

Query: 103 EN--GRERRISITQFKSL----GQSFNNGGTEKGSASRCIMA----------ECCVCLCG 149
           EN   RERRISITQFKSL      S   G +   +AS C  +          ECCVCLCG
Sbjct: 61  ENIKARERRISITQFKSLCHTSESSICEGSSTSAAASACSCSGSGSGWANTVECCVCLCG 120

[Close]

BLAST of CmaCh04G017740 vs. TrEMBL
Match: B9HTS5_POPTR (Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0010s05720g PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 6.8e-20
Identity = 67/113 (59.29%), Postives = 80/113 (70.80%), Query Frame = 1


Query: 43  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMM-SASGNPSSSEEEFDW--- 102
           MGLS+FP +AEGVL  PVLVMNTV+S+A LK++VRSV+Q++  A+  P   EEE D    
Sbjct: 1   MGLSSFPGAAEGVL--PVLVMNTVLSVALLKSMVRSVLQLVVGANWTPPDYEEEPDEYRR 60

Query: 103 ENGRERRISITQFKSLGQSFNNGGTEKGSASRCIMAECCVCLCGFEADEEHPE 152
           EN RERRISITQFKSL Q  N+GG    +       ECCVCLCGFEA+EE  E
Sbjct: 61  ENARERRISITQFKSLNQ--NDGGARNSA------MECCVCLCGFEAEEEVSE 103

[Close]

BLAST of CmaCh04G017740 vs. TAIR10
Match: AT1G67856.1 (AT1G67856.1 RING/U-box superfamily protein)

HSP 1 Score: 85.9 bits (211), Expect = 3.7e-17
Identity = 50/111 (45.05%), Postives = 78/111 (70.27%), Query Frame = 1


Query: 43  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNPS-SSEEEFDWENG 102
           MG+S++P ++EGV+  P+LVMNTV+S++ +KN+VRSV+ M+S+  N + + E++ D E+ 
Sbjct: 1   MGISHYPTASEGVM--PMLVMNTVVSVSLVKNMVRSVVNMVSSETNEARNKEDDQDHEDS 60

Query: 103 -RERRISITQFKSLGQSFNNGGTEKGSASRCIMAECCVCLCGFEADEEHPE 152
            R RRISIT F+SL ++       +GS +     +CCVCLCGF+ +EE  E
Sbjct: 61  KRRRRISITHFESLCEN-------RGSRNEREAMDCCVCLCGFKEEEEVSE 102

[Close]

BLAST of CmaCh04G017740 vs. TAIR10
Match: AT1G24580.1 (AT1G24580.1 RING/U-box superfamily protein)

HSP 1 Score: 68.9 bits (167), Expect = 4.6e-12
Identity = 40/89 (44.94%), Postives = 55/89 (61.80%), Query Frame = 1


Query: 63  MNTVMSMAFLKNLVRSVIQMMSASGNPSSSEEEFDWENGRERRISITQFKSLGQSFNNGG 122
           MNTV+S+  LKN+VRSV Q++++    S   ++   ++   RRISITQFKSL ++     
Sbjct: 1   MNTVVSITLLKNMVRSVFQIVASETESSMEIDDEPEDDFVTRRISITQFKSLCENIEEEE 60

Query: 123 TEKGSASRCIMAECCVCLCGFEADEEHPE 152
            EKG        ECCVCLCGF+ +EE  E
Sbjct: 61  EEKG-------VECCVCLCGFKEEEEVSE 82

[Close]

BLAST of CmaCh04G017740 vs. NCBI nr
Match: gi|778704905|ref|XP_011655602.1| (PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Cucumis sativus])

HSP 1 Score: 179.5 bits (454), Expect = 6.9e-42
Identity = 94/109 (86.24%), Postives = 98/109 (89.91%), Query Frame = 1


Query: 43  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNPSSSEEEFDWENGR 102
           MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKN VRSVIQMMSASGN SSSEEE+DWEN R
Sbjct: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNFVRSVIQMMSASGNSSSSEEEYDWENRR 60

Query: 103 ERRISITQFKSLGQSFNNGGTEKGSASRCIMAECCVCLCGFEADEEHPE 152
           ERRISITQFK+LGQSF NG TE+   SRC+MAECCVCLC FEADEE  E
Sbjct: 61  ERRISITQFKTLGQSF-NGETEEEFVSRCVMAECCVCLCRFEADEEVSE 108

[Close]

BLAST of CmaCh04G017740 vs. NCBI nr
Match: gi|802723824|ref|XP_012085531.1| (PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Jatropha curcas])

HSP 1 Score: 111.3 bits (277), Expect = 2.3e-21
Identity = 65/112 (58.04%), Postives = 80/112 (71.43%), Query Frame = 1


Query: 43  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNPSSSEE---EFDWE 102
           MGLS+FP +AEGVL  P+LVMNTV+S+A LKN+VRS++Q++ A+  P   E+   EF  E
Sbjct: 1   MGLSSFPSAAEGVL--PILVMNTVLSVALLKNMVRSLLQVVGANWIPQDYEQDPDEFPRE 60

Query: 103 NGRERRISITQFKSLGQSFNNGGTEKGSASRCIMAECCVCLCGFEADEEHPE 152
           N R R ISITQFKSL    N GG+  G  SR  + ECCVCLCGFEA+EE  E
Sbjct: 61  NARMRTISITQFKSLTPHSNGGGSCSGG-SRGAIVECCVCLCGFEAEEEVSE 109

[Close]

BLAST of CmaCh04G017740 vs. NCBI nr
Match: gi|590695186|ref|XP_007044819.1| (Uncharacterized protein TCM_010558 [Theobroma cacao])

HSP 1 Score: 107.5 bits (267), Expect = 3.3e-20
Identity = 69/126 (54.76%), Postives = 84/126 (66.67%), Query Frame = 1


Query: 43  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNPSSSEEE----FDW 102
           MGLSNFP +AEGVL  PVLVMNTV+S+A LKN+VRS++Q++ ASG+ SSS ++    +  
Sbjct: 1   MGLSNFPSAAEGVL--PVLVMNTVLSVALLKNMVRSLLQVVGASGSSSSSLDDESDGYPE 60

Query: 103 EN--GRERRISITQFKSL----GQSFNNGGTEKGSASRCIMA----------ECCVCLCG 149
           EN   RERRISITQFKSL      S   G +   +AS C  +          ECCVCLCG
Sbjct: 61  ENIKARERRISITQFKSLCHTSESSICEGSSTSAAASACSCSGSGSGWANTVECCVCLCG 120

[Close]

BLAST of CmaCh04G017740 vs. NCBI nr
Match: gi|590695189|ref|XP_007044820.1| (RING/U-box superfamily protein [Theobroma cacao])

HSP 1 Score: 107.5 bits (267), Expect = 3.3e-20
Identity = 68/115 (59.13%), Postives = 84/115 (73.04%), Query Frame = 1


Query: 43  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNPSSSEEE----FDW 102
           MGLSNFP +AEGVL  PVLVMNTV+S+A LKN+VRS++Q++ ASG+ SSS ++    +  
Sbjct: 1   MGLSNFPSAAEGVL--PVLVMNTVLSVALLKNMVRSLLQVVGASGSSSSSLDDESDGYPE 60

Query: 103 EN--GRERRISITQFKSLGQSFNNGGTEKGSASRCIMAECCVCLCGFEADEEHPE 152
           EN   RERRISITQFKSL  + +  G+  G A+     ECCVCLCGFEADEE  E
Sbjct: 61  ENIKARERRISITQFKSLCHTSDGSGS--GWAN---TVECCVCLCGFEADEEVSE 108

[Close]

BLAST of CmaCh04G017740 vs. NCBI nr
Match: gi|224107765|ref|XP_002314594.1| (zinc finger family protein [Populus trichocarpa])

HSP 1 Score: 105.9 bits (263), Expect = 9.7e-20
Identity = 67/113 (59.29%), Postives = 80/113 (70.80%), Query Frame = 1


Query: 43  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMM-SASGNPSSSEEEFDW--- 102
           MGLS+FP +AEGVL  PVLVMNTV+S+A LK++VRSV+Q++  A+  P   EEE D    
Sbjct: 1   MGLSSFPGAAEGVL--PVLVMNTVLSVALLKSMVRSVLQLVVGANWTPPDYEEEPDEYRR 60

Query: 103 ENGRERRISITQFKSLGQSFNNGGTEKGSASRCIMAECCVCLCGFEADEEHPE 152
           EN RERRISITQFKSL Q  N+GG    +       ECCVCLCGFEA+EE  E
Sbjct: 61  ENARERRISITQFKSLNQ--NDGGARNSA------MECCVCLCGFEAEEEVSE 103

The following BLAST results are available for this feature:

BLAST of CmaCh04G017740 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh04G017740 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KTI8_CUCSA	4.8e-42	86.24	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G598060 PE=4 SV=1	[more]
A0A067JRV9_JATCU	1.6e-21	58.04	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17849 PE=4 SV=1	[more]
A0A061E8K8_THECC	2.3e-20	59.13	RING/U-box superfamily protein OS=Theobroma cacao GN=TCM_010559 PE=4 SV=1	[more]
A0A061E6T9_THECC	2.3e-20	54.76	Uncharacterized protein OS=Theobroma cacao GN=TCM_010558 PE=4 SV=1	[more]
B9HTS5_POPTR	6.8e-20	59.29	Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0010s05720g PE=4 SV=1	[more]

BLAST of CmaCh04G017740 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G67856.1	3.7e-17	45.05	RING/U-box superfamily protein	[more]
AT1G24580.1	4.6e-12	44.94	RING/U-box superfamily protein	[more]

BLAST of CmaCh04G017740 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778704905\|ref\|XP_011655602.1\|	6.9e-42	86.24	PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Cucumis sativus]	[more]
gi\|802723824\|ref\|XP_012085531.1\|	2.3e-21	58.04	PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Jatropha curcas]	[more]
gi\|590695186\|ref\|XP_007044819.1\|	3.3e-20	54.76	Uncharacterized protein TCM_010558 [Theobroma cacao]	[more]
gi\|590695189\|ref\|XP_007044820.1\|	3.3e-20	59.13	RING/U-box superfamily protein [Theobroma cacao]	[more]
gi\|224107765\|ref\|XP_002314594.1\|	9.7e-20	59.29	zinc finger family protein [Populus trichocarpa]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0061630	ubiquitin protein ligase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G017740.1	CmaCh04G017740.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G017740	Cucsa.286560	Cucumber (Gy14) v1	cgycmaB0802
CmaCh04G017740	Cla010037	Watermelon (97103) v1	cmawmB700
CmaCh04G017740	Csa5G598060	Cucumber (Chinese Long) v2	cmacuB749
CmaCh04G017740	MELO3C011942	Melon (DHL92) v3.5.1	cmameB641
CmaCh04G017740	ClCG05G025820	Watermelon (Charleston Gray)	cmawcgB656
CmaCh04G017740	CSPI05G22190	Wild cucumber (PI 183967)	cmacpiB758
CmaCh04G017740	CmoCh04G018660	Cucurbita moschata (Rifu)	cmacmoB728
CmaCh04G017740	CmoCh18G007660	Cucurbita moschata (Rifu)	cmacmoB710
CmaCh04G017740	Lsi04G005990	Bottle gourd (USVL1VR-Ls)	cmalsiB670
CmaCh04G017740	Cp4.1LG09g05450	Cucurbita pepo (Zucchini)	cmacpeB694
CmaCh04G017740	Cp4.1LG01g15710	Cucurbita pepo (Zucchini)	cmacpeB720
CmaCh04G017740	MELO3C011942.2	Melon (DHL92) v3.6.1	cmamedB727
CmaCh04G017740	CsaV3_5G031030	Cucumber (Chinese Long) v3	cmacucB0886
CmaCh04G017740	Cla97C05G108050	Watermelon (97103) v2	cmawmbB759
CmaCh04G017740	Bhi07G001441	Wax gourd	cmawgoB0891
CmaCh04G017740	CsGy5G021660	Cucumber (Gy14) v2	cgybcmaB675
CmaCh04G017740	Carg14502	Silver-seed gourd	carcmaB1013
CmaCh04G017740	Carg14307	Silver-seed gourd	carcmaB0339

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G017740	Cucurbita moschata (Rifu)	cmacmoB680
CmaCh04G017740	Cucurbita moschata (Rifu)	cmacmoB747
CmaCh04G017740	Wild cucumber (PI 183967)	cmacpiB700
CmaCh04G017740	Cucumber (Chinese Long) v2	cmacuB692
CmaCh04G017740	Melon (DHL92) v3.5.1	cmameB681
CmaCh04G017740	Watermelon (Charleston Gray)	cmawcgB681
CmaCh04G017740	Watermelon (97103) v1	cmawmB670
CmaCh04G017740	Cucurbita pepo (Zucchini)	cmacpeB704
CmaCh04G017740	Cucurbita pepo (Zucchini)	cmacpeB756
CmaCh04G017740	Bottle gourd (USVL1VR-Ls)	cmalsiB704
CmaCh04G017740	Cucumber (Gy14) v2	cgybcmaB244
CmaCh04G017740	Melon (DHL92) v3.6.1	cmamedB764
CmaCh04G017740	Silver-seed gourd	carcmaB0706
CmaCh04G017740	Silver-seed gourd	carcmaB0884
CmaCh04G017740	Cucumber (Chinese Long) v3	cmacucB0823
CmaCh04G017740	Watermelon (97103) v2	cmawmbB789
CmaCh04G017740	Wax gourd	cmawgoB0863
CmaCh04G017740	Cucurbita maxima (Rimu)	cmacmaB189
CmaCh04G017740	Cucurbita maxima (Rimu)	cmacmaB404
CmaCh04G017740	Cucurbita maxima (Rimu)	cmacmaB540
CmaCh04G017740	Cucumber (Gy14) v1	cgycmaB1093