Lsi04G000870 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi04G000870
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionSKP1-like protein
Locationchr04 : 1036125 .. 1036610 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGACTGTTAACCTAAGGTCATCTGAGAATGAGATTTTCAAGGTGAGGGAGGAGATCGCGAAGCAATCCGTGGTGGTTCGAAACTTTCTGGAAGAGGACGAGTCTAATGGCGATGAAATTATGATTCCGCTGCCGAATATCAGCGGAAGAATGCTGGGAATGGTGATTGAGTGGATTGTGAAGCACGTCGATAAAAAATTAACAGAGGCAGCGCTTAGAGATTGGGGAAGCAAGTTCGTGGATGATCTGGATTTGGATTCGTTGTTTGAGCTTATAATGGCGGCTAATTACATGGAAGTCACCGATTTATTCCATAAAGCTTGCCAAAGCGTCGCTGATAAGATCGCCCGAAAGAGTCCGGAGGAGATTCGGAGGATCTTTAACATTACGAATGATTTTACGCCTGAAGAAGAGGCTGAGATTCGTCGCCAGAATGCTTGGGTCTTCGAAACCGATAGTGGTAGCAGTAGCGGTAGTAAATAG

mRNA sequence

ATGAGGACTGTTAACCTAAGGTCATCTGAGAATGAGATTTTCAAGGTGAGGGAGGAGATCGCGAAGCAATCCGTGGTGGTTCGAAACTTTCTGGAAGAGGACGAGTCTAATGGCGATGAAATTATGATTCCGCTGCCGAATATCAGCGGAAGAATGCTGGGAATGGTGATTGAGTGGATTGTGAAGCACGTCGATAAAAAATTAACAGAGGCAGCGCTTAGAGATTGGGGAAGCAAGTTCGTGGATGATCTGGATTTGGATTCGTTGTTTGAGCTTATAATGGCGGCTAATTACATGGAAGTCACCGATTTATTCCATAAAGCTTGCCAAAGCGTCGCTGATAAGATCGCCCGAAAGAGTCCGGAGGAGATTCGGAGGATCTTTAACATTACGAATGATTTTACGCCTGAAGAAGAGGCTGAGATTCGTCGCCAGAATGCTTGGGTCTTCGAAACCGATAGTGGTAGCAGTAGCGGTAGTAAATAG

Coding sequence (CDS)

ATGAGGACTGTTAACCTAAGGTCATCTGAGAATGAGATTTTCAAGGTGAGGGAGGAGATCGCGAAGCAATCCGTGGTGGTTCGAAACTTTCTGGAAGAGGACGAGTCTAATGGCGATGAAATTATGATTCCGCTGCCGAATATCAGCGGAAGAATGCTGGGAATGGTGATTGAGTGGATTGTGAAGCACGTCGATAAAAAATTAACAGAGGCAGCGCTTAGAGATTGGGGAAGCAAGTTCGTGGATGATCTGGATTTGGATTCGTTGTTTGAGCTTATAATGGCGGCTAATTACATGGAAGTCACCGATTTATTCCATAAAGCTTGCCAAAGCGTCGCTGATAAGATCGCCCGAAAGAGTCCGGAGGAGATTCGGAGGATCTTTAACATTACGAATGATTTTACGCCTGAAGAAGAGGCTGAGATTCGTCGCCAGAATGCTTGGGTCTTCGAAACCGATAGTGGTAGCAGTAGCGGTAGTAAATAG

Protein sequence

MRTVNLRSSENEIFKVREEIAKQSVVVRNFLEEDESNGDEIMIPLPNISGRMLGMVIEWIVKHVDKKLTEAALRDWGSKFVDDLDLDSLFELIMAANYMEVTDLFHKACQSVADKIARKSPEEIRRIFNITNDFTPEEEAEIRRQNAWVFETDSGSSSGSK
Homology
[Close]
BLAST of Lsi04G000870 vs. Swiss-Prot
Match: SKP1_RAT (S-phase kinase-associated protein 1 OS=Rattus norvegicus GN=Skp1 PE=1 SV=3)

HSP 1 Score: 128.3 bits (321), Expect = 7.8e-29
Identity = 69/163 (42.33%), Postives = 102/163 (62.58%), Query Frame = 1 

Query: 1   MRTVNLRSSENEIFKVREEIAKQSVVVRNFLEE--DESNGDEIMIPLPNISGRMLGMVIE 60
           M T+ L+SS+ EIF+V  EIAKQSV ++  LE+   +  GD+  +PLPN++  +L  VI+
Sbjct: 1   MPTIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQ 60

Query: 61  WIVKHVD----------KKLTEAALRDWGSKFVDDLDLDSLFELIMAANYMEVTDLFHKA 120
           W   H D          K+     +  W  +F+  +D  +LFELI+AANY+++  L    
Sbjct: 61  WCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLK-VDQGTLFELILAANYLDIKGLLDVT 120

Query: 121 CQSVADKIARKSPEEIRRIFNITNDFTPEEEAEIRRQNAWVFE 152
           C++VA+ I  K+PEEIR+ FNI NDFT EEEA++R++N W  E
Sbjct: 121 CKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162

[Close]
BLAST of Lsi04G000870 vs. Swiss-Prot
Match: SKP1_MOUSE (S-phase kinase-associated protein 1 OS=Mus musculus GN=Skp1 PE=1 SV=3)

HSP 1 Score: 128.3 bits (321), Expect = 7.8e-29
Identity = 69/163 (42.33%), Postives = 102/163 (62.58%), Query Frame = 1 

Query: 1   MRTVNLRSSENEIFKVREEIAKQSVVVRNFLEE--DESNGDEIMIPLPNISGRMLGMVIE 60
           M T+ L+SS+ EIF+V  EIAKQSV ++  LE+   +  GD+  +PLPN++  +L  VI+
Sbjct: 1   MPTIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQ 60

Query: 61  WIVKHVD----------KKLTEAALRDWGSKFVDDLDLDSLFELIMAANYMEVTDLFHKA 120
           W   H D          K+     +  W  +F+  +D  +LFELI+AANY+++  L    
Sbjct: 61  WCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLK-VDQGTLFELILAANYLDIKGLLDVT 120

Query: 121 CQSVADKIARKSPEEIRRIFNITNDFTPEEEAEIRRQNAWVFE 152
           C++VA+ I  K+PEEIR+ FNI NDFT EEEA++R++N W  E
Sbjct: 121 CKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162

[Close]
BLAST of Lsi04G000870 vs. Swiss-Prot
Match: SKP1B_ARATH (SKP1-like protein 1B OS=Arabidopsis thaliana GN=SKP1B PE=1 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.7e-28
Identity = 70/173 (40.46%), Postives = 106/173 (61.27%), Query Frame = 1 

Query: 1   MRTVNLRSSENEIFKVREEIAKQSVVVRNFLEED-ESNGDEIMIPLPNISGRMLGMVIEW 60
           +R + L+SS+ E F++ E +A +S  +++ +E+D   NG    IPLPN++ ++L  VIE+
Sbjct: 4   VRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNG----IPLPNVTSKILSKVIEY 63

Query: 61  IVKHVD-----KKLTEAA----------------LRDWGSKFVDDLDLDSLFELIMAANY 120
             +HV+     +   +AA                L+ W S+F+  +D  +LF+LI+AANY
Sbjct: 64  CKRHVEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIK-VDQGTLFDLILAANY 123

Query: 121 MEVTDLFHKACQSVADKIARKSPEEIRRIFNITNDFTPEEEAEIRRQNAWVFE 152
           + +  L    CQ+VAD I  K+PEEIR+ FNI NDFTPEEE E+RR+N W FE
Sbjct: 124 LNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171

[Close]
BLAST of Lsi04G000870 vs. Swiss-Prot
Match: SKP1_XENLA (S-phase kinase-associated protein 1 OS=Xenopus laevis GN=skp1 PE=1 SV=3)

HSP 1 Score: 126.7 bits (317), Expect = 2.3e-28
Identity = 68/163 (41.72%), Postives = 102/163 (62.58%), Query Frame = 1 

Query: 1   MRTVNLRSSENEIFKVREEIAKQSVVVRNFLEE--DESNGDEIMIPLPNISGRMLGMVIE 60
           M ++ L+SS+ EIF+V  EIAKQSV ++  LE+   +  GD+  +PLPN++  +L  VI+
Sbjct: 1   MPSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQ 60

Query: 61  WIVKHVD----------KKLTEAALRDWGSKFVDDLDLDSLFELIMAANYMEVTDLFHKA 120
           W   H D          K+     +  W  +F+  +D  +LFELI+AANY+++  L    
Sbjct: 61  WCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLK-VDQGTLFELILAANYLDIKGLLDVT 120

Query: 121 CQSVADKIARKSPEEIRRIFNITNDFTPEEEAEIRRQNAWVFE 152
           C++VA+ I  K+PEEIR+ FNI NDFT EEEA++R++N W  E
Sbjct: 121 CKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162

[Close]
BLAST of Lsi04G000870 vs. Swiss-Prot
Match: SKP1_MACFA (S-phase kinase-associated protein 1 OS=Macaca fascicularis GN=SKP1 PE=2 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 2.3e-28
Identity = 68/163 (41.72%), Postives = 102/163 (62.58%), Query Frame = 1 

Query: 1   MRTVNLRSSENEIFKVREEIAKQSVVVRNFLEE--DESNGDEIMIPLPNISGRMLGMVIE 60
           M ++ L+SS+ EIF+V  EIAKQSV ++  LE+   +  GD+  +PLPN++  +L  VI+
Sbjct: 1   MPSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQ 60

Query: 61  WIVKHVD----------KKLTEAALRDWGSKFVDDLDLDSLFELIMAANYMEVTDLFHKA 120
           W   H D          K+     +  W  +F+  +D  +LFELI+AANY+++  L    
Sbjct: 61  WCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLK-VDQGTLFELILAANYLDIKGLLDVT 120

Query: 121 CQSVADKIARKSPEEIRRIFNITNDFTPEEEAEIRRQNAWVFE 152
           C++VA+ I  K+PEEIR+ FNI NDFT EEEA++R++N W  E
Sbjct: 121 CKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162

[Close]
BLAST of Lsi04G000870 vs. TrEMBL
Match: A0A0A0KRJ8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G622630 PE=3 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 4.7e-65
Identity = 131/164 (79.88%), Postives = 144/164 (87.80%), Query Frame = 1 

Query: 1   MRTVNLRSSENEIFKVREEIAKQSVVVRNFLEEDESNGDEIMIPLPNISGRMLGMVIEWI 60
           MR VNLRSSENEIFKV EE+AKQSVVVR FLEED+SN DEI IPLPNISGR+LGMVIEWI
Sbjct: 1   MRIVNLRSSENEIFKVSEEVAKQSVVVRIFLEEDDSNNDEITIPLPNISGRLLGMVIEWI 60

Query: 61  VKHVDKKLTEAALRDWGSKFVDDLDLDSLFELIMAANYMEVTDLFHKACQSVADKIARKS 120
           V HV++KL E AL  W +KF++DLDLD LFELIMAANY+EVTDLFH  CQ VADKI+ KS
Sbjct: 61  VMHVEEKLAEEALHAWKTKFLEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120

Query: 121 PEEIRRIFNITNDFTPEEEAEIRRQNAWVFE---TDSGSSSGSK 162
           PEEIR+IFNITNDFTPEEEAEIRRQNAWVFE   + SGS+SGSK
Sbjct: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGSGSTSGSK 164

[Close]
BLAST of Lsi04G000870 vs. TrEMBL
Match: G7KSZ5_MEDTR (SCF ubiquitin ligase, SKP1 component OS=Medicago truncatula GN=MTR_7g021400 PE=3 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 9.0e-32
Identity = 75/156 (48.08%), Postives = 109/156 (69.87%), Query Frame = 1 

Query: 2   RTVNLRSSENEIFKVREEIAKQSVVVRNFLEED-ESNGDEIMIPLPNISGRMLGMVIEWI 61
           + + L+SS+NE F+V E +A +S  +++ +E+D   NG    IP+PN++G++L  VIE+ 
Sbjct: 6   KKMTLKSSDNETFEVPEAVALESQTIKHMIEDDCTDNG----IPVPNVTGQILAKVIEYC 65

Query: 62  VKHVD-----KKLTEAALRDWGSKFVDDLDLDSLFELIMAANYMEVTDLFHKACQSVADK 121
            KHVD     +K +E  L++W ++FV  +D D+LF+LI+AANY+ +  L    CQSVAD 
Sbjct: 66  KKHVDAASSDEKPSEDDLKNWDAEFVK-VDQDTLFDLILAANYLNIKSLLDLTCQSVADM 125

Query: 122 IARKSPEEIRRIFNITNDFTPEEEAEIRRQNAWVFE 152
           I  K+PEEIR+ FNI NDFTPEEE E+RR+N W FE
Sbjct: 126 IKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156

[Close]
BLAST of Lsi04G000870 vs. TrEMBL
Match: A0A072U1V4_MEDTR (SCF ubiquitin ligase, SKP1 component OS=Medicago truncatula GN=MTR_7g094150 PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.5e-31
Identity = 74/156 (47.44%), Postives = 108/156 (69.23%), Query Frame = 1 

Query: 2   RTVNLRSSENEIFKVREEIAKQSVVVRNFLEED-ESNGDEIMIPLPNISGRMLGMVIEWI 61
           + + L+SS+NE F+V E +A +S  +++ +E+D   NG    IP+PN++G++L  VIE+ 
Sbjct: 6   KKITLKSSDNETFEVPEAVALESQTIKHMIEDDCTDNG----IPVPNVTGQILAKVIEYC 65

Query: 62  VKHVD-----KKLTEAALRDWGSKFVDDLDLDSLFELIMAANYMEVTDLFHKACQSVADK 121
            KHVD     +K +E  L++W ++FV  +D D LF+LI+AANY+ +  L    CQ+VAD 
Sbjct: 66  KKHVDAESSDEKPSEDDLKNWDAEFVK-VDQDKLFDLILAANYLNIKSLLDLTCQTVADM 125

Query: 122 IARKSPEEIRRIFNITNDFTPEEEAEIRRQNAWVFE 152
           I  K+PEEIR+ FNI NDFTPEEE E+RR+N W FE
Sbjct: 126 IKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156

[Close]
BLAST of Lsi04G000870 vs. TrEMBL
Match: M0SL53_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=3 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 7.6e-31
Identity = 74/165 (44.85%), Postives = 107/165 (64.85%), Query Frame = 1 

Query: 1   MRTVNLRSSENEIFKVREEIAKQSVVVRNFLEED-ESNGDEIMIPLPNISGRMLGMVIEW 60
           M+T+ L+SS+ E+F+V E +A +S  +++ +E+D   NG    IPLPN++ ++L  VIE+
Sbjct: 1   MKTITLKSSDGEVFEVDEAVAMESQTIKHMIEDDCAENG----IPLPNVTSKILAKVIEY 60

Query: 61  IVKHVD-------------KKLTEAALRDWGSKFVDDLDLDSLFELIMAANYMEVTDLFH 120
             KHVD              KL +  L+ W ++FV  +D  +LF+LI+AANY+ +  L  
Sbjct: 61  CKKHVDASAAASSKSPDDASKLADDELKSWDAEFVK-VDQATLFDLILAANYLNIKGLLD 120

Query: 121 KACQSVADKIARKSPEEIRRIFNITNDFTPEEEAEIRRQNAWVFE 152
             CQ+VAD I  K+PEEIR+ FNI NDFTPEEE E+RR+N W FE
Sbjct: 121 LTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 160

[Close]
BLAST of Lsi04G000870 vs. TrEMBL
Match: M0RG66_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=3 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 2.2e-30
Identity = 73/162 (45.06%), Postives = 105/162 (64.81%), Query Frame = 1 

Query: 2   RTVNLRSSENEIFKVREEIAKQSVVVRNFLEED-ESNGDEIMIPLPNISGRMLGMVIEWI 61
           +T+ LRSS+ E+F+V E +A +S  +++ +E+D   NG    IPLPN++ ++L  V+E+ 
Sbjct: 3   KTITLRSSDGEVFEVEEAVAMESQTIKHMIEDDCADNG----IPLPNVTSKILAKVVEYC 62

Query: 62  VKHVDK-----------KLTEAALRDWGSKFVDDLDLDSLFELIMAANYMEVTDLFHKAC 121
            KHVD             +TE  L+ W + FV  +D  +LF+LI+AANY+ +  L    C
Sbjct: 63  KKHVDAAARSSSSDDAPSVTEDDLKTWDADFVK-VDQATLFDLILAANYLNIKGLLDLTC 122

Query: 122 QSVADKIARKSPEEIRRIFNITNDFTPEEEAEIRRQNAWVFE 152
           Q+VAD I  K+PEEIR+ FNI NDFTPEEE E+RR+N W FE
Sbjct: 123 QTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 159

[Close]
BLAST of Lsi04G000870 vs. TAIR10
Match: AT5G42190.1 (AT5G42190.1 E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein)

HSP 1 Score: 127.1 bits (318), Expect = 9.8e-30
Identity = 70/173 (40.46%), Postives = 106/173 (61.27%), Query Frame = 1 

Query: 1   MRTVNLRSSENEIFKVREEIAKQSVVVRNFLEED-ESNGDEIMIPLPNISGRMLGMVIEW 60
           +R + L+SS+ E F++ E +A +S  +++ +E+D   NG    IPLPN++ ++L  VIE+
Sbjct: 4   VRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNG----IPLPNVTSKILSKVIEY 63

Query: 61  IVKHVD-----KKLTEAA----------------LRDWGSKFVDDLDLDSLFELIMAANY 120
             +HV+     +   +AA                L+ W S+F+  +D  +LF+LI+AANY
Sbjct: 64  CKRHVEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIK-VDQGTLFDLILAANY 123

Query: 121 MEVTDLFHKACQSVADKIARKSPEEIRRIFNITNDFTPEEEAEIRRQNAWVFE 152
           + +  L    CQ+VAD I  K+PEEIR+ FNI NDFTPEEE E+RR+N W FE
Sbjct: 124 LNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171

[Close]
BLAST of Lsi04G000870 vs. TAIR10
Match: AT1G75950.1 (AT1G75950.1 S phase kinase-associated protein 1)

HSP 1 Score: 126.7 bits (317), Expect = 1.3e-29
Identity = 68/162 (41.98%), Postives = 102/162 (62.96%), Query Frame = 1 

Query: 2   RTVNLRSSENEIFKVREEIAKQSVVVRNFLEED-ESNGDEIMIPLPNISGRMLGMVIEWI 61
           + + L+SS+ E F+V E +A +S  + + +E+D   NG    +PLPN++ ++L  VIE+ 
Sbjct: 4   KKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNG----VPLPNVTSKILAKVIEYC 63

Query: 62  VKHVDKKLTEAA-----------LRDWGSKFVDDLDLDSLFELIMAANYMEVTDLFHKAC 121
            +HV+   ++A            L+ W + F+  +D  +LFELI+AANY+ + +L    C
Sbjct: 64  KRHVEAAASKAEAVEGAATSDDDLKAWDADFMK-IDQATLFELILAANYLNIKNLLDLTC 123

Query: 122 QSVADKIARKSPEEIRRIFNITNDFTPEEEAEIRRQNAWVFE 152
           Q+VAD I  K+PEEIR  FNI NDFTPEEE E+RR+N W FE
Sbjct: 124 QTVADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160

[Close]
BLAST of Lsi04G000870 vs. TAIR10
Match: AT3G25650.1 (AT3G25650.1 SKP1-like 15)

HSP 1 Score: 125.6 bits (314), Expect = 2.8e-29
Identity = 67/166 (40.36%), Postives = 105/166 (63.25%), Query Frame = 1 

Query: 6   LRSSENEIFKVREEIAKQSVVVRNFLEEDESNGDEIMIPLPNISGRMLGMVIEWIVKHVD 65
           L SS+ E F+V E +A++  +V++ LE+D    +   IPL N++G +L +V+E+  KHVD
Sbjct: 8   LTSSDGESFQVEEVVARKLQIVKHLLEDDCVINE---IPLQNVTGNILSIVLEYCKKHVD 67

Query: 66  KKLTEAALRD----------------WGSKFVDDLDLDSLFELIMAANYMEVTDLFHKAC 125
             + + A  +                W ++F+ ++D++++F+LI+AANY+ V  L    C
Sbjct: 68  DVVDDDASEEPKKKKPDDEAKQNLDAWDAEFMKNIDMETIFKLILAANYLNVEGLLGLTC 127

Query: 126 QSVADKIARKSPEEIRRIFNITNDFTPEEEAE-IRRQNAWVFETDS 155
           Q+VAD I  K+PEE+R +FNI NDFT EEE E IR++NAW FE D+
Sbjct: 128 QTVADYIKDKTPEEVRELFNIENDFTHEEEEEAIRKENAWAFEADT 170

[Close]
BLAST of Lsi04G000870 vs. TAIR10
Match: AT2G03170.1 (AT2G03170.1 SKP1-like 14)

HSP 1 Score: 125.6 bits (314), Expect = 2.8e-29
Identity = 63/147 (42.86%), Postives = 100/147 (68.03%), Query Frame = 1 

Query: 6   LRSSENEIFKVREEIAKQSVVVRNFLEEDESNGDEIMIPLPNISGRMLGMVIEWIVKHV- 65
           L SS+ E F+V E +A++  +V + +E+D    +   +PL N++G++L +V+E+  KHV 
Sbjct: 8   LSSSDGESFEVEEAVARKLKIVEHMIEDDCVVTE---VPLQNVTGKILSIVVEYCKKHVV 67

Query: 66  DKKLTEAALRDWGSKFVDDLDLDSLFELIMAANYMEVTDLFHKACQSVADKIARKSPEEI 125
           D++  E   + W  +F+   D  ++F+L++AANY+ +  L   + Q+VAD+I  K+PEEI
Sbjct: 68  DEESDE--FKTWDEEFMKKFDQPTVFQLLLAANYLNIKGLLDLSAQTVADRIKDKTPEEI 127

Query: 126 RRIFNITNDFTPEEEAEIRRQNAWVFE 152
           R IFNI NDFTPEEEA +R++NAW FE
Sbjct: 128 REIFNIENDFTPEEEAAVRKENAWAFE 149

[Close]
BLAST of Lsi04G000870 vs. TAIR10
Match: AT1G20140.1 (AT1G20140.1 SKP1-like 4)

HSP 1 Score: 124.4 bits (311), Expect = 6.3e-29
Identity = 68/163 (41.72%), Postives = 105/163 (64.42%), Query Frame = 1 

Query: 2   RTVNLRSSENEIFKVREEIAKQSVVVRNFLEED-ESNGDEIMIPLPNISGRMLGMVIEWI 61
           + + L+SS+ E F++ E +A +S  +++ +E+D   NG    IPLPN++G +L  VIE+ 
Sbjct: 6   KMIILKSSDGESFEIEEAVAVKSQTIKHMIEDDCADNG----IPLPNVTGAILAKVIEYC 65

Query: 62  VKHV--------DKKLTEAA----LRDWGSKFVDDLDLDSLFELIMAANYMEVTDLFHKA 121
            KHV        DK    +A    L++W S+FV  +D  +LF+LI+AANY+ +  L    
Sbjct: 66  KKHVEAAAEAGGDKDFYGSAENDELKNWDSEFVK-VDQPTLFDLILAANYLNIGGLLDLT 125

Query: 122 CQSVADKIARKSPEEIRRIFNITNDFTPEEEAEIRRQNAWVFE 152
           C++VAD++  K+PE++R  FNI ND+TPEEEAE+R +N W FE
Sbjct: 126 CKAVADQMRGKTPEQMRAHFNIKNDYTPEEEAEVRNENKWAFE 163

[Close]
BLAST of Lsi04G000870 vs. NCBI nr
Match: gi|659091990|ref|XP_008446842.1| (PREDICTED: SKP1-like protein 12 [Cucumis melo])

HSP 1 Score: 258.5 bits (659), Expect = 8.0e-66
Identity = 131/162 (80.86%), Postives = 144/162 (88.89%), Query Frame = 1 

Query: 1   MRTVNLRSSENEIFKVREEIAKQSVVVRNFLEEDESNGDEIMIPLPNISGRMLGMVIEWI 60
           MRTVNLRSSENEIFKV EE+AKQSVVVRNFLEED SNGDEI IPLPNISG++LGMVIEWI
Sbjct: 1   MRTVNLRSSENEIFKVSEEVAKQSVVVRNFLEEDNSNGDEITIPLPNISGKLLGMVIEWI 60

Query: 61  VKHVDKKLTEAALRDWGSKFVDDLDLDSLFELIMAANYMEVTDLFHKACQSVADKIARKS 120
             HV++KL E  L  W +KF++DLDLD LFELIMAANY+EVTDLFH  CQ VADKI+ KS
Sbjct: 61  AMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120

Query: 121 PEEIRRIFNITNDFTPEEEAEIRRQNAWVFE-TDSGSSSGSK 162
           PEEIR+IFNITNDFTPEEEAEIRRQNAWVFE + SGS+SGSK
Sbjct: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGSTSGSK 162

[Close]
BLAST of Lsi04G000870 vs. NCBI nr
Match: gi|449449372|ref|XP_004142439.1| (PREDICTED: SKP1-like protein 14 [Cucumis sativus])

HSP 1 Score: 255.4 bits (651), Expect = 6.8e-65
Identity = 131/164 (79.88%), Postives = 144/164 (87.80%), Query Frame = 1 

Query: 1   MRTVNLRSSENEIFKVREEIAKQSVVVRNFLEEDESNGDEIMIPLPNISGRMLGMVIEWI 60
           MR VNLRSSENEIFKV EE+AKQSVVVR FLEED+SN DEI IPLPNISGR+LGMVIEWI
Sbjct: 1   MRIVNLRSSENEIFKVSEEVAKQSVVVRIFLEEDDSNNDEITIPLPNISGRLLGMVIEWI 60

Query: 61  VKHVDKKLTEAALRDWGSKFVDDLDLDSLFELIMAANYMEVTDLFHKACQSVADKIARKS 120
           V HV++KL E AL  W +KF++DLDLD LFELIMAANY+EVTDLFH  CQ VADKI+ KS
Sbjct: 61  VMHVEEKLAEEALHAWKTKFLEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120

Query: 121 PEEIRRIFNITNDFTPEEEAEIRRQNAWVFE---TDSGSSSGSK 162
           PEEIR+IFNITNDFTPEEEAEIRRQNAWVFE   + SGS+SGSK
Sbjct: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGSGSTSGSK 164

[Close]
BLAST of Lsi04G000870 vs. NCBI nr
Match: gi|357502745|ref|XP_003621661.1| (SCF ubiquitin ligase, SKP1 component [Medicago truncatula])

HSP 1 Score: 144.8 bits (364), Expect = 1.3e-31
Identity = 75/156 (48.08%), Postives = 109/156 (69.87%), Query Frame = 1 

Query: 2   RTVNLRSSENEIFKVREEIAKQSVVVRNFLEED-ESNGDEIMIPLPNISGRMLGMVIEWI 61
           + + L+SS+NE F+V E +A +S  +++ +E+D   NG    IP+PN++G++L  VIE+ 
Sbjct: 6   KKMTLKSSDNETFEVPEAVALESQTIKHMIEDDCTDNG----IPVPNVTGQILAKVIEYC 65

Query: 62  VKHVD-----KKLTEAALRDWGSKFVDDLDLDSLFELIMAANYMEVTDLFHKACQSVADK 121
            KHVD     +K +E  L++W ++FV  +D D+LF+LI+AANY+ +  L    CQSVAD 
Sbjct: 66  KKHVDAASSDEKPSEDDLKNWDAEFVK-VDQDTLFDLILAANYLNIKSLLDLTCQSVADM 125

Query: 122 IARKSPEEIRRIFNITNDFTPEEEAEIRRQNAWVFE 152
           I  K+PEEIR+ FNI NDFTPEEE E+RR+N W FE
Sbjct: 126 IKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156

[Close]
BLAST of Lsi04G000870 vs. NCBI nr
Match: gi|922345501|ref|XP_013449666.1| (SCF ubiquitin ligase, SKP1 component [Medicago truncatula])

HSP 1 Score: 144.1 bits (362), Expect = 2.2e-31
Identity = 74/156 (47.44%), Postives = 108/156 (69.23%), Query Frame = 1 

Query: 2   RTVNLRSSENEIFKVREEIAKQSVVVRNFLEED-ESNGDEIMIPLPNISGRMLGMVIEWI 61
           + + L+SS+NE F+V E +A +S  +++ +E+D   NG    IP+PN++G++L  VIE+ 
Sbjct: 6   KKITLKSSDNETFEVPEAVALESQTIKHMIEDDCTDNG----IPVPNVTGQILAKVIEYC 65

Query: 62  VKHVD-----KKLTEAALRDWGSKFVDDLDLDSLFELIMAANYMEVTDLFHKACQSVADK 121
            KHVD     +K +E  L++W ++FV  +D D LF+LI+AANY+ +  L    CQ+VAD 
Sbjct: 66  KKHVDAESSDEKPSEDDLKNWDAEFVK-VDQDKLFDLILAANYLNIKSLLDLTCQTVADM 125

Query: 122 IARKSPEEIRRIFNITNDFTPEEEAEIRRQNAWVFE 152
           I  K+PEEIR+ FNI NDFTPEEE E+RR+N W FE
Sbjct: 126 IKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156

[Close]
BLAST of Lsi04G000870 vs. NCBI nr
Match: gi|695016871|ref|XP_009395355.1| (PREDICTED: SKP1-like protein 1B [Musa acuminata subsp. malaccensis])

HSP 1 Score: 141.7 bits (356), Expect = 1.1e-30
Identity = 74/165 (44.85%), Postives = 107/165 (64.85%), Query Frame = 1 

Query: 1   MRTVNLRSSENEIFKVREEIAKQSVVVRNFLEED-ESNGDEIMIPLPNISGRMLGMVIEW 60
           M+T+ L+SS+ E+F+V E +A +S  +++ +E+D   NG    IPLPN++ ++L  VIE+
Sbjct: 1   MKTITLKSSDGEVFEVDEAVAMESQTIKHMIEDDCAENG----IPLPNVTSKILAKVIEY 60

Query: 61  IVKHVD-------------KKLTEAALRDWGSKFVDDLDLDSLFELIMAANYMEVTDLFH 120
             KHVD              KL +  L+ W ++FV  +D  +LF+LI+AANY+ +  L  
Sbjct: 61  CKKHVDASAAASSKSPDDASKLADDELKSWDAEFVK-VDQATLFDLILAANYLNIKGLLD 120

Query: 121 KACQSVADKIARKSPEEIRRIFNITNDFTPEEEAEIRRQNAWVFE 152
             CQ+VAD I  K+PEEIR+ FNI NDFTPEEE E+RR+N W FE
Sbjct: 121 LTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 160

The following BLAST results are available for this feature:
BLAST of Lsi04G000870 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SKP1_RAT7.8e-2942.33S-phase kinase-associated protein 1 OS=Rattus norvegicus GN=Skp1 PE=1 SV=3[more]
SKP1_MOUSE7.8e-2942.33S-phase kinase-associated protein 1 OS=Mus musculus GN=Skp1 PE=1 SV=3[more]
SKP1B_ARATH1.7e-2840.46SKP1-like protein 1B OS=Arabidopsis thaliana GN=SKP1B PE=1 SV=1[more]
SKP1_XENLA2.3e-2841.72S-phase kinase-associated protein 1 OS=Xenopus laevis GN=skp1 PE=1 SV=3[more]
SKP1_MACFA2.3e-2841.72S-phase kinase-associated protein 1 OS=Macaca fascicularis GN=SKP1 PE=2 SV=1[more]
BLAST of Lsi04G000870 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KRJ8_CUCSA4.7e-6579.88Uncharacterized protein OS=Cucumis sativus GN=Csa_5G622630 PE=3 SV=1[more]
G7KSZ5_MEDTR9.0e-3248.08SCF ubiquitin ligase, SKP1 component OS=Medicago truncatula GN=MTR_7g021400 PE=3... [more]
A0A072U1V4_MEDTR1.5e-3147.44SCF ubiquitin ligase, SKP1 component OS=Medicago truncatula GN=MTR_7g094150 PE=3... [more]
M0SL53_MUSAM7.6e-3144.85Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=3 SV=1[more]
M0RG66_MUSAM2.2e-3045.06Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=3 SV=1[more]
BLAST of Lsi04G000870 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G42190.19.8e-3040.46 E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein[more]
AT1G75950.11.3e-2941.98 S phase kinase-associated protein 1[more]
AT3G25650.12.8e-2940.36 SKP1-like 15[more]
AT2G03170.12.8e-2942.86 SKP1-like 14[more]
AT1G20140.16.3e-2941.72 SKP1-like 4[more]
BLAST of Lsi04G000870 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659091990|ref|XP_008446842.1|8.0e-6680.86PREDICTED: SKP1-like protein 12 [Cucumis melo][more]
gi|449449372|ref|XP_004142439.1|6.8e-6579.88PREDICTED: SKP1-like protein 14 [Cucumis sativus][more]
gi|357502745|ref|XP_003621661.1|1.3e-3148.08SCF ubiquitin ligase, SKP1 component [Medicago truncatula][more]
gi|922345501|ref|XP_013449666.1|2.2e-3147.44SCF ubiquitin ligase, SKP1 component [Medicago truncatula][more]
gi|695016871|ref|XP_009395355.1|1.1e-3044.85PREDICTED: SKP1-like protein 1B [Musa acuminata subsp. malaccensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006511ubiquitin-dependent protein catabolic process
Vocabulary: INTERPRO
TermDefinition
IPR016897SKP1
IPR016073Skp1_comp_POZ
IPR016072Skp1_comp_dimer
IPR011333SKP1/BTB/POZ_sf
IPR001232SKP1-like
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
biological_process GO:0000084 mitotic S phase
biological_process GO:0016032 viral process
biological_process GO:0033209 tumor necrosis factor-mediated signaling pathway
biological_process GO:0002223 stimulatory C-type lectin receptor signaling pathway
biological_process GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
biological_process GO:0051439 regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle
biological_process GO:0007219 Notch signaling pathway
biological_process GO:0038061 NIK/NF-kappaB signaling
biological_process GO:0051437 positive regulation of ubiquitin-protein ligase activity involved in regulation of mitotic cell cycle transition
biological_process GO:0000080 mitotic G1 phase
biological_process GO:0000086 G2/M transition of mitotic cell cycle
biological_process GO:0000082 G1/S transition of mitotic cell cycle
biological_process GO:0038095 Fc-epsilon receptor signaling pathway
biological_process GO:0007623 circadian rhythm
biological_process GO:0031145 anaphase-promoting complex-dependent catabolic process
biological_process GO:0035518 histone H2A monoubiquitination
cellular_component GO:0019005 SCF ubiquitin ligase complex
cellular_component GO:0005575 cellular_component
cellular_component GO:0031467 Cul7-RING ubiquitin ligase complex
cellular_component GO:0005829 cytosol
cellular_component GO:0070062 extracellular exosome
cellular_component GO:0005654 nucleoplasm
cellular_component GO:0031519 PcG protein complex
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
molecular_function GO:0004842 ubiquitin-protein transferase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi04G000870.1Lsi04G000870.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001232S-phase kinase-associated protein 1-likeSMARTSM00512skp1_3coord: 1..101
score: 2.0
IPR011333SKP1/BTB/POZ domainunknownSSF54695POZ domaincoord: 2..67
score: 1.47
IPR016072SKP1 component, dimerisationPFAMPF01466Skp1coord: 103..148
score: 3.5
IPR016072SKP1 component, dimerisationunknownSSF81382Skp1 dimerisation domain-likecoord: 73..149
score: 6.54
IPR016073SKP1 component, POZ domainPFAMPF03931Skp1_POZcoord: 4..64
score: 9.5
IPR016897S-phase kinase-associated protein 1PIRPIRSF028729SCF_Skpcoord: 1..152
score: 2.6
NoneNo IPR availableGENE3DG3DSA:3.30.710.10coord: 1..152
score: 7.9
NoneNo IPR availablePANTHERPTHR11165SKP1coord: 1..154
score: 9.2
NoneNo IPR availablePANTHERPTHR11165:SF24S-PHASE KINASE-ASSOCIATED PROTEIN 1coord: 1..154
score: 9.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi04G000870Csa5G622630Cucumber (Chinese Long) v2culsiB368
Lsi04G000870CSPI05G26930Wild cucumber (PI 183967)cpilsiB372
Lsi04G000870Cucsa.308560Cucumber (Gy14) v1cgylsiB497
Lsi04G000870CmaCh04G013820Cucurbita maxima (Rimu)cmalsiB669
Lsi04G000870CmoCh04G014530Cucurbita moschata (Rifu)cmolsiB660
Lsi04G000870Cla020544Watermelon (97103) v1lsiwmB312
Lsi04G000870MELO3C012407Melon (DHL92) v3.5.1lsimeB281
Lsi04G000870ClCG05G021200Watermelon (Charleston Gray)lsiwcgB283
Lsi04G000870MELO3C012407.2Melon (DHL92) v3.6.1lsimedB297
Lsi04G000870Cla97C05G102870Watermelon (97103) v2lsiwmbB284
Lsi04G000870Bhi07G000716Wax gourdlsiwgoB387
Lsi04G000870Cp4.1LG01g14620Cucurbita pepo (Zucchini)cpelsiB352
Lsi04G000870Carg01943Silver-seed gourdcarlsiB767
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi04G000870Wax gourdlsiwgoB365
Lsi04G000870Bottle gourd (USVL1VR-Ls)lsilsiB152
Lsi04G000870Cucurbita maxima (Rimu)cmalsiB279
Lsi04G000870Cucurbita maxima (Rimu)cmalsiB379
Lsi04G000870Cucurbita maxima (Rimu)cmalsiB684
Lsi04G000870Cucurbita moschata (Rifu)cmolsiB268
Lsi04G000870Cucurbita moschata (Rifu)cmolsiB364
Lsi04G000870Cucurbita moschata (Rifu)cmolsiB676
Lsi04G000870Cucurbita moschata (Rifu)cmolsiB750
Lsi04G000870Cucurbita pepo (Zucchini)cpelsiB032
Lsi04G000870Cucurbita pepo (Zucchini)cpelsiB151
Lsi04G000870Cucurbita pepo (Zucchini)cpelsiB365
Lsi04G000870Melon (DHL92) v3.5.1lsimeB304
Lsi04G000870Watermelon (Charleston Gray)lsiwcgB300
Lsi04G000870Watermelon (97103) v1lsiwmB289
Lsi04G000870Cucumber (Gy14) v2cgyblsiB337
Lsi04G000870Cucumber (Gy14) v2cgyblsiB421
Lsi04G000870Melon (DHL92) v3.6.1lsimedB319
Lsi04G000870Silver-seed gourdcarlsiB240
Lsi04G000870Silver-seed gourdcarlsiB437
Lsi04G000870Silver-seed gourdcarlsiB627
Lsi04G000870Cucumber (Chinese Long) v3cuclsiB393
Lsi04G000870Watermelon (97103) v2lsiwmbB300