MELO3C012407 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C012407
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionSKP1-like protein 4
Locationchr10 : 669757 .. 670916 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTTGGAATTAAATTCCGAAAAGGAATGTGAGTTGGGAATTGATCAAAGAAGTTCCCCTAAAACAAAAACCCTAATCCCTATAAATACGGCCATTCATCGAATCAATTAATTCATCCATTCATCTTCGAGAAATTCCCAAATTCATATCTGTTTCTTCGATTCCATTCTTTGATTGATCATCAAATATGAGGACTGTTAACCTAAGATCATCTGAGAACGAGATTTTCAAGGTGAGTGAGGAGGTCGCGAAGCAATCAGTGGTGGTTCGTAACTTTCTTGAAGAGGACAATTCCAATGGCGATGAAATCACGATTCCGCTGCCGAATATCAGTGGAAAATTGCTGGGAATGGTGATCGAGTGGATTGCGATGCATGTCGAGGAAAAATTAGCAGAGGAAGATCTTCATGCTTGGAAAACCAAGTTCATGGAGGATCTGGATTTGGATTTGTTGTTTGAGCTTATAATGGCTGCCAATTACCTGGAAGTTACCGATTTATTTCATGCAACTTGCCAATGTGTCGCTGATAAAATCTCCGGAAAGAGTCCGGAGGAGATTCGGAAGATCTTTAACATCACGAATGATTTTACACCTGAAGAAGAGGCTGAGATTCGACGCCAGAATGCTTGGGTCTTCGAACCATCCGGTAGCGGTAGCACCAGCGGCAGTAAATAAATTTTTGATTTCGCTAACTTTTAGTTCATGTTTTTGAGGAAAAAACAAGATGGGTGTCAATAGAATATATTAGAAATATTAAAGATTCATGGTTTACTATTTGCTGTTTTCAAATTTTTGAGGCAATCCATGAGTTTTTGTTTTCAAATGTTAATGTTCTTGCTGGAAAAAATACTGATGTGTCGCAATATTATTAATTTCTATGTTGAAACCTTTCTTTATTTGAAGATATTCTACATCCATCTTTTCTAAACTTAATCATAATAATACATCAAAGTATTGATCTTTAAATGAATCTGTTCTTAGCTTTGATGGTTCTTGATGATTGGATAGAATATGATGATAGTAGAGATAGGTTTCTTTATAAATAACCACGTGGAAAAACCATTGATCTTAAAGGGAACTATTTAGAACTTTTTGTTTGTGACATAGCAGACAACCACTTGGGAATGATGAGAATAAATTATTATGAGCTTTGCTTTTAG

mRNA sequence

CTTTGGAATTAAATTCCGAAAAGGAATGTGAGTTGGGAATTGATCAAAGAAGTTCCCCTAAAACAAAAACCCTAATCCCTATAAATACGGCCATTCATCGAATCAATTAATTCATCCATTCATCTTCGAGAAATTCCCAAATTCATATCTGTTTCTTCGATTCCATTCTTTGATTGATCATCAAATATGAGGACTGTTAACCTAAGATCATCTGAGAACGAGATTTTCAAGGTGAGTGAGGAGGTCGCGAAGCAATCAGTGGTGGTTCGTAACTTTCTTGAAGAGGACAATTCCAATGGCGATGAAATCACGATTCCGCTGCCGAATATCAGTGGAAAATTGCTGGGAATGGTGATCGAGTGGATTGCGATGCATGTCGAGGAAAAATTAGCAGAGGAAGATCTTCATGCTTGGAAAACCAAGTTCATGGAGGATCTGGATTTGGATTTGTTGTTTGAGCTTATAATGGCTGCCAATTACCTGGAAGTTACCGATTTATTTCATGCAACTTGCCAATGTGTCGCTGATAAAATCTCCGGAAAGAGTCCGGAGGAGATTCGGAAGATCTTTAACATCACGAATGATTTTACACCTGAAGAAGAGGCTGAGATTCGACGCCAGAATGCTTGGGTCTTCGAACCATCCGGTAGCGGTAGCACCAGCGGCAGTAAATAAATTTTTGATTTCGCTAACTTTTAGTTCATGTTTTTGAGGAAAAAACAAGATGGGTGTCAATAGAATATATTAGAAATATTAAAGATTCATGGTTTACTATTTGCTGTTTTCAAATTTTTGAGGCAATCCATGAGTTTTTGTTTTCAAATGTTAATGTTCTTGCTGGAAAAAATACTGATGTGTCGCAATATTATTAATTTCTATGTTGAAACCTTTCTTTATTTGAAGATATTCTACATCCATCTTTTCTAAACTTAATCATAATAATACATCAAAGTATTGATCTTTAAATGAATCTGTTCTTAGCTTTGATGGTTCTTGATGATTGGATAGAATATGATGATAGTAGAGATAGGTTTCTTTATAAATAACCACGTGGAAAAACCATTGATCTTAAAGGGAACTATTTAGAACTTTTTGTTTGTGACATAGCAGACAACCACTTGGGAATGATGAGAATAAATTATTATGAGCTTTGCTTTTAG

Coding sequence (CDS)

ATGAGGACTGTTAACCTAAGATCATCTGAGAACGAGATTTTCAAGGTGAGTGAGGAGGTCGCGAAGCAATCAGTGGTGGTTCGTAACTTTCTTGAAGAGGACAATTCCAATGGCGATGAAATCACGATTCCGCTGCCGAATATCAGTGGAAAATTGCTGGGAATGGTGATCGAGTGGATTGCGATGCATGTCGAGGAAAAATTAGCAGAGGAAGATCTTCATGCTTGGAAAACCAAGTTCATGGAGGATCTGGATTTGGATTTGTTGTTTGAGCTTATAATGGCTGCCAATTACCTGGAAGTTACCGATTTATTTCATGCAACTTGCCAATGTGTCGCTGATAAAATCTCCGGAAAGAGTCCGGAGGAGATTCGGAAGATCTTTAACATCACGAATGATTTTACACCTGAAGAAGAGGCTGAGATTCGACGCCAGAATGCTTGGGTCTTCGAACCATCCGGTAGCGGTAGCACCAGCGGCAGTAAATAA

Protein sequence

MRTVNLRSSENEIFKVSEEVAKQSVVVRNFLEEDNSNGDEITIPLPNISGKLLGMVIEWIAMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKSPEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGSTSGSK*
Homology
[Close]
BLAST of MELO3C012407 vs. Swiss-Prot
Match: SKP1B_ARATH (SKP1-like protein 1B OS=Arabidopsis thaliana GN=SKP1B PE=1 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 1.5e-32
Identity = 78/173 (45.09%), Postives = 105/173 (60.69%), Query Frame = 1 

Query: 1   MRTVNLRSSENEIFKVSEEVAKQSVVVRNFLEED-NSNGDEITIPLPNISGKLLGMVIEW 60
           +R + L+SS+ E F++ E VA +S  +++ +E+D   NG    IPLPN++ K+L  VIE+
Sbjct: 4   VRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNG----IPLPNVTSKILSKVIEY 63

Query: 61  IAMHVE--EKL-------------------AEEDLHAWKTKFMEDLDLDLLFELIMAANY 120
              HVE  EK                    ++EDL  W ++F++ +D   LF+LI+AANY
Sbjct: 64  CKRHVEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIK-VDQGTLFDLILAANY 123

Query: 121 LEVTDLFHATCQCVADKISGKSPEEIRKIFNITNDFTPEEEAEIRRQNAWVFE 152
           L +  L   TCQ VAD I GK+PEEIRK FNI NDFTPEEE E+RR+N W FE
Sbjct: 124 LNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171

[Close]
BLAST of MELO3C012407 vs. Swiss-Prot
Match: SKP1_MOUSE (S-phase kinase-associated protein 1 OS=Mus musculus GN=Skp1 PE=1 SV=3)

HSP 1 Score: 139.8 bits (351), Expect = 2.6e-32
Identity = 72/163 (44.17%), Postives = 102/163 (62.58%), Query Frame = 1 

Query: 1   MRTVNLRSSENEIFKVSEEVAKQSVVVRNFLEE--DNSNGDEITIPLPNISGKLLGMVIE 60
           M T+ L+SS+ EIF+V  E+AKQSV ++  LE+   +  GD+  +PLPN++  +L  VI+
Sbjct: 1   MPTIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQ 60

Query: 61  WIAMHVEEKLAEED----------LHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHAT 120
           W   H ++    ED          +  W  +F++ +D   LFELI+AANYL++  L   T
Sbjct: 61  WCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLK-VDQGTLFELILAANYLDIKGLLDVT 120

Query: 121 CQCVADKISGKSPEEIRKIFNITNDFTPEEEAEIRRQNAWVFE 152
           C+ VA+ I GK+PEEIRK FNI NDFT EEEA++R++N W  E
Sbjct: 121 CKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162

[Close]
BLAST of MELO3C012407 vs. Swiss-Prot
Match: SKP1_RAT (S-phase kinase-associated protein 1 OS=Rattus norvegicus GN=Skp1 PE=1 SV=3)

HSP 1 Score: 139.8 bits (351), Expect = 2.6e-32
Identity = 72/163 (44.17%), Postives = 102/163 (62.58%), Query Frame = 1 

Query: 1   MRTVNLRSSENEIFKVSEEVAKQSVVVRNFLEE--DNSNGDEITIPLPNISGKLLGMVIE 60
           M T+ L+SS+ EIF+V  E+AKQSV ++  LE+   +  GD+  +PLPN++  +L  VI+
Sbjct: 1   MPTIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQ 60

Query: 61  WIAMHVEEKLAEED----------LHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHAT 120
           W   H ++    ED          +  W  +F++ +D   LFELI+AANYL++  L   T
Sbjct: 61  WCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLK-VDQGTLFELILAANYLDIKGLLDVT 120

Query: 121 CQCVADKISGKSPEEIRKIFNITNDFTPEEEAEIRRQNAWVFE 152
           C+ VA+ I GK+PEEIRK FNI NDFT EEEA++R++N W  E
Sbjct: 121 CKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162

[Close]
BLAST of MELO3C012407 vs. Swiss-Prot
Match: SKP1A_ARATH (SKP1-like protein 1A OS=Arabidopsis thaliana GN=SKP1A PE=1 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 2.6e-32
Identity = 76/162 (46.91%), Postives = 100/162 (61.73%), Query Frame = 1 

Query: 2   RTVNLRSSENEIFKVSEEVAKQSVVVRNFLEEDN-SNGDEITIPLPNISGKLLGMVIEWI 61
           + + L+SS+ E F+V E VA +S  + + +E+D   NG    +PLPN++ K+L  VIE+ 
Sbjct: 4   KKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNG----VPLPNVTSKILAKVIEYC 63

Query: 62  AMHVEEKLA-----------EEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATC 121
             HVE   +           ++DL AW   FM+ +D   LFELI+AANYL + +L   TC
Sbjct: 64  KRHVEAAASKAEAVEGAATSDDDLKAWDADFMK-IDQATLFELILAANYLNIKNLLDLTC 123

Query: 122 QCVADKISGKSPEEIRKIFNITNDFTPEEEAEIRRQNAWVFE 152
           Q VAD I GK+PEEIR  FNI NDFTPEEE E+RR+N W FE
Sbjct: 124 QTVADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160

[Close]
BLAST of MELO3C012407 vs. Swiss-Prot
Match: SKP1_XENLA (S-phase kinase-associated protein 1 OS=Xenopus laevis GN=skp1 PE=1 SV=3)

HSP 1 Score: 138.3 bits (347), Expect = 7.6e-32
Identity = 71/163 (43.56%), Postives = 102/163 (62.58%), Query Frame = 1 

Query: 1   MRTVNLRSSENEIFKVSEEVAKQSVVVRNFLEE--DNSNGDEITIPLPNISGKLLGMVIE 60
           M ++ L+SS+ EIF+V  E+AKQSV ++  LE+   +  GD+  +PLPN++  +L  VI+
Sbjct: 1   MPSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQ 60

Query: 61  WIAMHVEEKLAEED----------LHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHAT 120
           W   H ++    ED          +  W  +F++ +D   LFELI+AANYL++  L   T
Sbjct: 61  WCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLK-VDQGTLFELILAANYLDIKGLLDVT 120

Query: 121 CQCVADKISGKSPEEIRKIFNITNDFTPEEEAEIRRQNAWVFE 152
           C+ VA+ I GK+PEEIRK FNI NDFT EEEA++R++N W  E
Sbjct: 121 CKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162

[Close]
BLAST of MELO3C012407 vs. TrEMBL
Match: A0A0A0KRJ8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G622630 PE=3 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 2.6e-79
Identity = 154/164 (93.90%), Postives = 157/164 (95.73%), Query Frame = 1 

Query: 1   MRTVNLRSSENEIFKVSEEVAKQSVVVRNFLEEDNSNGDEITIPLPNISGKLLGMVIEWI 60
           MR VNLRSSENEIFKVSEEVAKQSVVVR FLEED+SN DEITIPLPNISG+LLGMVIEWI
Sbjct: 1   MRIVNLRSSENEIFKVSEEVAKQSVVVRIFLEEDDSNNDEITIPLPNISGRLLGMVIEWI 60

Query: 61  AMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120
            MHVEEKLAEE LHAWKTKF+EDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS
Sbjct: 61  VMHVEEKLAEEALHAWKTKFLEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120

Query: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEP--SGSGSTSGSK 163
           PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEP  SGSGSTSGSK
Sbjct: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGSGSTSGSK 164

[Close]
BLAST of MELO3C012407 vs. TrEMBL
Match: A0A072U1V4_MEDTR (SCF ubiquitin ligase, SKP1 component OS=Medicago truncatula GN=MTR_7g094150 PE=3 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 5.7e-34
Identity = 78/156 (50.00%), Postives = 108/156 (69.23%), Query Frame = 1 

Query: 2   RTVNLRSSENEIFKVSEEVAKQSVVVRNFLEED-NSNGDEITIPLPNISGKLLGMVIEWI 61
           + + L+SS+NE F+V E VA +S  +++ +E+D   NG    IP+PN++G++L  VIE+ 
Sbjct: 6   KKITLKSSDNETFEVPEAVALESQTIKHMIEDDCTDNG----IPVPNVTGQILAKVIEYC 65

Query: 62  AMHVE-----EKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADK 121
             HV+     EK +E+DL  W  +F++ +D D LF+LI+AANYL +  L   TCQ VAD 
Sbjct: 66  KKHVDAESSDEKPSEDDLKNWDAEFVK-VDQDKLFDLILAANYLNIKSLLDLTCQTVADM 125

Query: 122 ISGKSPEEIRKIFNITNDFTPEEEAEIRRQNAWVFE 152
           I GK+PEEIRK FNI NDFTPEEE E+RR+N W FE
Sbjct: 126 IKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156

[Close]
BLAST of MELO3C012407 vs. TrEMBL
Match: G7KSZ5_MEDTR (SCF ubiquitin ligase, SKP1 component OS=Medicago truncatula GN=MTR_7g021400 PE=3 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 7.4e-34
Identity = 78/156 (50.00%), Postives = 108/156 (69.23%), Query Frame = 1 

Query: 2   RTVNLRSSENEIFKVSEEVAKQSVVVRNFLEED-NSNGDEITIPLPNISGKLLGMVIEWI 61
           + + L+SS+NE F+V E VA +S  +++ +E+D   NG    IP+PN++G++L  VIE+ 
Sbjct: 6   KKMTLKSSDNETFEVPEAVALESQTIKHMIEDDCTDNG----IPVPNVTGQILAKVIEYC 65

Query: 62  AMHVE-----EKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADK 121
             HV+     EK +E+DL  W  +F++ +D D LF+LI+AANYL +  L   TCQ VAD 
Sbjct: 66  KKHVDAASSDEKPSEDDLKNWDAEFVK-VDQDTLFDLILAANYLNIKSLLDLTCQSVADM 125

Query: 122 ISGKSPEEIRKIFNITNDFTPEEEAEIRRQNAWVFE 152
           I GK+PEEIRK FNI NDFTPEEE E+RR+N W FE
Sbjct: 126 IKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156

[Close]
BLAST of MELO3C012407 vs. TrEMBL
Match: B2LUR1_MALDO (SKP1-like protein 1 OS=Malus domestica PE=2 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 9.7e-34
Identity = 76/155 (49.03%), Postives = 107/155 (69.03%), Query Frame = 1 

Query: 2   RTVNLRSSENEIFKVSEEVAKQSVVVRNFLEEDNSNGDEITIPLPNISGKLLGMVIEWIA 61
           + + L+SS+ E F+V E VA +S  +++ +E+D ++     IPLPN++ K+L  VIE+  
Sbjct: 6   KKITLKSSDGESFEVEEAVALESQTIKHMIEDDCADNG---IPLPNVTSKILAKVIEYCK 65

Query: 62  MHVE-----EKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKI 121
            HV+     EK++E+DL AW  +F++ +D   LF+LI+AANYL +  L   TCQ VAD I
Sbjct: 66  RHVDAAKPDEKISEDDLKAWDQEFVK-VDQATLFDLILAANYLNIKSLLDLTCQTVADMI 125

Query: 122 SGKSPEEIRKIFNITNDFTPEEEAEIRRQNAWVFE 152
            GK+PEEIRK FNI NDFTPEEE E+RR+N W FE
Sbjct: 126 KGKTPEEIRKTFNINNDFTPEEEEEVRRENQWAFE 156

[Close]
BLAST of MELO3C012407 vs. TrEMBL
Match: A0A151THT0_CAJCA (SKP1-like protein 1B OS=Cajanus cajan GN=KK1_012913 PE=3 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 1.3e-33
Identity = 77/155 (49.68%), Postives = 106/155 (68.39%), Query Frame = 1 

Query: 2   RTVNLRSSENEIFKVSEEVAKQSVVVRNFLEEDNSNGDEITIPLPNISGKLLGMVIEWIA 61
           + + L+SS+ E F+V E VA +S  +++ +E+D ++     IPLPN++ K+L  VIE+  
Sbjct: 5   KKITLKSSDGEAFEVEEAVALESQTIKHMIEDDCADSG---IPLPNVTSKILAKVIEYCK 64

Query: 62  MHVE-----EKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKI 121
            HV+     +K +EEDL AW T F++ +D   LF+LI+AANYL +  L   TCQ VAD I
Sbjct: 65  KHVDAANPDDKPSEEDLKAWDTDFVK-VDQATLFDLILAANYLNIKSLLDLTCQTVADMI 124

Query: 122 SGKSPEEIRKIFNITNDFTPEEEAEIRRQNAWVFE 152
            GK+PEEIRK FNI NDFTPEEE E+RR+N W FE
Sbjct: 125 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]
BLAST of MELO3C012407 vs. TAIR10
Match: AT5G42190.1 (AT5G42190.1 E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein)

HSP 1 Score: 140.6 bits (353), Expect = 8.7e-34
Identity = 78/173 (45.09%), Postives = 105/173 (60.69%), Query Frame = 1 

Query: 1   MRTVNLRSSENEIFKVSEEVAKQSVVVRNFLEED-NSNGDEITIPLPNISGKLLGMVIEW 60
           +R + L+SS+ E F++ E VA +S  +++ +E+D   NG    IPLPN++ K+L  VIE+
Sbjct: 4   VRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNG----IPLPNVTSKILSKVIEY 63

Query: 61  IAMHVE--EKL-------------------AEEDLHAWKTKFMEDLDLDLLFELIMAANY 120
              HVE  EK                    ++EDL  W ++F++ +D   LF+LI+AANY
Sbjct: 64  CKRHVEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIK-VDQGTLFDLILAANY 123

Query: 121 LEVTDLFHATCQCVADKISGKSPEEIRKIFNITNDFTPEEEAEIRRQNAWVFE 152
           L +  L   TCQ VAD I GK+PEEIRK FNI NDFTPEEE E+RR+N W FE
Sbjct: 124 LNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171

[Close]
BLAST of MELO3C012407 vs. TAIR10
Match: AT1G75950.1 (AT1G75950.1 S phase kinase-associated protein 1)

HSP 1 Score: 139.8 bits (351), Expect = 1.5e-33
Identity = 76/162 (46.91%), Postives = 100/162 (61.73%), Query Frame = 1 

Query: 2   RTVNLRSSENEIFKVSEEVAKQSVVVRNFLEEDN-SNGDEITIPLPNISGKLLGMVIEWI 61
           + + L+SS+ E F+V E VA +S  + + +E+D   NG    +PLPN++ K+L  VIE+ 
Sbjct: 4   KKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNG----VPLPNVTSKILAKVIEYC 63

Query: 62  AMHVEEKLA-----------EEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATC 121
             HVE   +           ++DL AW   FM+ +D   LFELI+AANYL + +L   TC
Sbjct: 64  KRHVEAAASKAEAVEGAATSDDDLKAWDADFMK-IDQATLFELILAANYLNIKNLLDLTC 123

Query: 122 QCVADKISGKSPEEIRKIFNITNDFTPEEEAEIRRQNAWVFE 152
           Q VAD I GK+PEEIR  FNI NDFTPEEE E+RR+N W FE
Sbjct: 124 QTVADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160

[Close]
BLAST of MELO3C012407 vs. TAIR10
Match: AT1G10230.1 (AT1G10230.1 SKP1-like 18)

HSP 1 Score: 137.9 bits (346), Expect = 5.6e-33
Identity = 71/152 (46.71%), Postives = 101/152 (66.45%), Query Frame = 1 

Query: 6   LRSSENEIFKVSEEVAKQSVVVRNFLEEDNSNGDEITIPLPNISGKLLGMVIEWIAMHV- 65
           L SS+ E F++ E VA++ +++ + +E DN  G+   IPL N++G +L  +IE+  MHV 
Sbjct: 33  LTSSDGESFEIDEAVARKFLIIVHMME-DNCAGE--AIPLENVTGDILSKIIEYAKMHVN 92

Query: 66  ------EEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISG 125
                 E++ A+++L +W  KFME LDL+ +F++I+AANYL    L     Q VAD I  
Sbjct: 93  EPSEEDEDEEAKKNLDSWDAKFMEKLDLETIFKIILAANYLNFEGLLGFASQTVADYIKD 152

Query: 126 KSPEEIRKIFNITNDFTPEEEAEIRRQNAWVF 151
           K+PEE+R+IFNI NDFTPEEE EIR++NAW F
Sbjct: 153 KTPEEVREIFNIENDFTPEEEEEIRKENAWTF 181

[Close]
BLAST of MELO3C012407 vs. TAIR10
Match: AT4G34470.1 (AT4G34470.1 SKP1-like 12)

HSP 1 Score: 136.7 bits (343), Expect = 1.3e-32
Identity = 76/154 (49.35%), Postives = 100/154 (64.94%), Query Frame = 1 

Query: 2   RTVNLRSSENEIFKVSEEVAKQSVVVRNFLEEDN-SNGDEITIPLPNISGKLLGMVIEWI 61
           + + L SS+ + F+V E VA QS  + + +E+D  ++G    IPL N+  K+L  VIE+ 
Sbjct: 4   KMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADG----IPLANVESKILVKVIEYC 63

Query: 62  AM-HVEEK--LAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKIS 121
              HV+E   ++EEDL+ W  KFM DL+   +FELI+AANYL +  LF  TCQ VAD I 
Sbjct: 64  KKYHVDEANPISEEDLNKWDEKFM-DLEQSTIFELILAANYLNIKSLFDLTCQTVADMIK 123

Query: 122 GKSPEEIRKIFNITNDFTPEEEAEIRRQNAWVFE 152
           GK+PEEIR  FNI NDFTPEEE  +R++N W FE
Sbjct: 124 GKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152

[Close]
BLAST of MELO3C012407 vs. TAIR10
Match: AT4G34210.1 (AT4G34210.1 SKP1-like 11)

HSP 1 Score: 134.0 bits (336), Expect = 8.1e-32
Identity = 75/154 (48.70%), Postives = 99/154 (64.29%), Query Frame = 1 

Query: 2   RTVNLRSSENEIFKVSEEVAKQSVVVRNFLEEDN-SNGDEITIPLPNISGKLLGMVIEWI 61
           + + L SS+ + F+V E VA QS  + + +E+D  ++G    IPL N+  K+L  VIE+ 
Sbjct: 4   KMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADG----IPLANVESKILVKVIEYC 63

Query: 62  AMH-VEEK--LAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKIS 121
             H V+E   ++EEDL+ W  KFM DL+   +FELI+AANYL +  L   TCQ VAD I 
Sbjct: 64  KKHHVDEANPISEEDLNNWDEKFM-DLEQSTIFELILAANYLNIKSLLDLTCQTVADMIK 123

Query: 122 GKSPEEIRKIFNITNDFTPEEEAEIRRQNAWVFE 152
           GK+PEEIR  FNI NDFTPEEE  +R++N W FE
Sbjct: 124 GKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152

[Close]
BLAST of MELO3C012407 vs. NCBI nr
Match: gi|659091990|ref|XP_008446842.1| (PREDICTED: SKP1-like protein 12 [Cucumis melo])

HSP 1 Score: 324.7 bits (831), Expect = 9.2e-86
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 1 

Query: 1   MRTVNLRSSENEIFKVSEEVAKQSVVVRNFLEEDNSNGDEITIPLPNISGKLLGMVIEWI 60
           MRTVNLRSSENEIFKVSEEVAKQSVVVRNFLEEDNSNGDEITIPLPNISGKLLGMVIEWI
Sbjct: 1   MRTVNLRSSENEIFKVSEEVAKQSVVVRNFLEEDNSNGDEITIPLPNISGKLLGMVIEWI 60

Query: 61  AMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120
           AMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS
Sbjct: 61  AMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120

Query: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGSTSGSK 163
           PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGSTSGSK
Sbjct: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGSTSGSK 162

[Close]
BLAST of MELO3C012407 vs. NCBI nr
Match: gi|449449372|ref|XP_004142439.1| (PREDICTED: SKP1-like protein 14 [Cucumis sativus])

HSP 1 Score: 302.8 bits (774), Expect = 3.7e-79
Identity = 154/164 (93.90%), Postives = 157/164 (95.73%), Query Frame = 1 

Query: 1   MRTVNLRSSENEIFKVSEEVAKQSVVVRNFLEEDNSNGDEITIPLPNISGKLLGMVIEWI 60
           MR VNLRSSENEIFKVSEEVAKQSVVVR FLEED+SN DEITIPLPNISG+LLGMVIEWI
Sbjct: 1   MRIVNLRSSENEIFKVSEEVAKQSVVVRIFLEEDDSNNDEITIPLPNISGRLLGMVIEWI 60

Query: 61  AMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120
            MHVEEKLAEE LHAWKTKF+EDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS
Sbjct: 61  VMHVEEKLAEEALHAWKTKFLEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120

Query: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEP--SGSGSTSGSK 163
           PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEP  SGSGSTSGSK
Sbjct: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGSGSTSGSK 164

[Close]
BLAST of MELO3C012407 vs. NCBI nr
Match: gi|922345501|ref|XP_013449666.1| (SCF ubiquitin ligase, SKP1 component [Medicago truncatula])

HSP 1 Score: 152.1 bits (383), Expect = 8.2e-34
Identity = 78/156 (50.00%), Postives = 108/156 (69.23%), Query Frame = 1 

Query: 2   RTVNLRSSENEIFKVSEEVAKQSVVVRNFLEED-NSNGDEITIPLPNISGKLLGMVIEWI 61
           + + L+SS+NE F+V E VA +S  +++ +E+D   NG    IP+PN++G++L  VIE+ 
Sbjct: 6   KKITLKSSDNETFEVPEAVALESQTIKHMIEDDCTDNG----IPVPNVTGQILAKVIEYC 65

Query: 62  AMHVE-----EKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADK 121
             HV+     EK +E+DL  W  +F++ +D D LF+LI+AANYL +  L   TCQ VAD 
Sbjct: 66  KKHVDAESSDEKPSEDDLKNWDAEFVK-VDQDKLFDLILAANYLNIKSLLDLTCQTVADM 125

Query: 122 ISGKSPEEIRKIFNITNDFTPEEEAEIRRQNAWVFE 152
           I GK+PEEIRK FNI NDFTPEEE E+RR+N W FE
Sbjct: 126 IKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156

[Close]
BLAST of MELO3C012407 vs. NCBI nr
Match: gi|357502745|ref|XP_003621661.1| (SCF ubiquitin ligase, SKP1 component [Medicago truncatula])

HSP 1 Score: 151.8 bits (382), Expect = 1.1e-33
Identity = 78/156 (50.00%), Postives = 108/156 (69.23%), Query Frame = 1 

Query: 2   RTVNLRSSENEIFKVSEEVAKQSVVVRNFLEED-NSNGDEITIPLPNISGKLLGMVIEWI 61
           + + L+SS+NE F+V E VA +S  +++ +E+D   NG    IP+PN++G++L  VIE+ 
Sbjct: 6   KKMTLKSSDNETFEVPEAVALESQTIKHMIEDDCTDNG----IPVPNVTGQILAKVIEYC 65

Query: 62  AMHVE-----EKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADK 121
             HV+     EK +E+DL  W  +F++ +D D LF+LI+AANYL +  L   TCQ VAD 
Sbjct: 66  KKHVDAASSDEKPSEDDLKNWDAEFVK-VDQDTLFDLILAANYLNIKSLLDLTCQSVADM 125

Query: 122 ISGKSPEEIRKIFNITNDFTPEEEAEIRRQNAWVFE 152
           I GK+PEEIRK FNI NDFTPEEE E+RR+N W FE
Sbjct: 126 IKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156

[Close]
BLAST of MELO3C012407 vs. NCBI nr
Match: gi|779176272|ref|NP_001292563.1| (SKP1-like protein 1A [Malus domestica])

HSP 1 Score: 151.4 bits (381), Expect = 1.4e-33
Identity = 76/155 (49.03%), Postives = 107/155 (69.03%), Query Frame = 1 

Query: 2   RTVNLRSSENEIFKVSEEVAKQSVVVRNFLEEDNSNGDEITIPLPNISGKLLGMVIEWIA 61
           + + L+SS+ E F+V E VA +S  +++ +E+D ++     IPLPN++ K+L  VIE+  
Sbjct: 6   KKITLKSSDGESFEVEEAVALESQTIKHMIEDDCADNG---IPLPNVTSKILAKVIEYCK 65

Query: 62  MHVE-----EKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKI 121
            HV+     EK++E+DL AW  +F++ +D   LF+LI+AANYL +  L   TCQ VAD I
Sbjct: 66  RHVDAAKPDEKISEDDLKAWDQEFVK-VDQATLFDLILAANYLNIKSLLDLTCQTVADMI 125

Query: 122 SGKSPEEIRKIFNITNDFTPEEEAEIRRQNAWVFE 152
            GK+PEEIRK FNI NDFTPEEE E+RR+N W FE
Sbjct: 126 KGKTPEEIRKTFNINNDFTPEEEEEVRRENQWAFE 156

The following BLAST results are available for this feature:
BLAST of MELO3C012407 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SKP1B_ARATH1.5e-3245.09SKP1-like protein 1B OS=Arabidopsis thaliana GN=SKP1B PE=1 SV=1[more]
SKP1_MOUSE2.6e-3244.17S-phase kinase-associated protein 1 OS=Mus musculus GN=Skp1 PE=1 SV=3[more]
SKP1_RAT2.6e-3244.17S-phase kinase-associated protein 1 OS=Rattus norvegicus GN=Skp1 PE=1 SV=3[more]
SKP1A_ARATH2.6e-3246.91SKP1-like protein 1A OS=Arabidopsis thaliana GN=SKP1A PE=1 SV=1[more]
SKP1_XENLA7.6e-3243.56S-phase kinase-associated protein 1 OS=Xenopus laevis GN=skp1 PE=1 SV=3[more]
BLAST of MELO3C012407 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KRJ8_CUCSA2.6e-7993.90Uncharacterized protein OS=Cucumis sativus GN=Csa_5G622630 PE=3 SV=1[more]
A0A072U1V4_MEDTR5.7e-3450.00SCF ubiquitin ligase, SKP1 component OS=Medicago truncatula GN=MTR_7g094150 PE=3... [more]
G7KSZ5_MEDTR7.4e-3450.00SCF ubiquitin ligase, SKP1 component OS=Medicago truncatula GN=MTR_7g021400 PE=3... [more]
B2LUR1_MALDO9.7e-3449.03SKP1-like protein 1 OS=Malus domestica PE=2 SV=1[more]
A0A151THT0_CAJCA1.3e-3349.68SKP1-like protein 1B OS=Cajanus cajan GN=KK1_012913 PE=3 SV=1[more]
BLAST of MELO3C012407 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G42190.18.7e-3445.09 E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein[more]
AT1G75950.11.5e-3346.91 S phase kinase-associated protein 1[more]
AT1G10230.15.6e-3346.71 SKP1-like 18[more]
AT4G34470.11.3e-3249.35 SKP1-like 12[more]
AT4G34210.18.1e-3248.70 SKP1-like 11[more]
BLAST of MELO3C012407 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659091990|ref|XP_008446842.1|9.2e-86100.00PREDICTED: SKP1-like protein 12 [Cucumis melo][more]
gi|449449372|ref|XP_004142439.1|3.7e-7993.90PREDICTED: SKP1-like protein 14 [Cucumis sativus][more]
gi|922345501|ref|XP_013449666.1|8.2e-3450.00SCF ubiquitin ligase, SKP1 component [Medicago truncatula][more]
gi|357502745|ref|XP_003621661.1|1.1e-3350.00SCF ubiquitin ligase, SKP1 component [Medicago truncatula][more]
gi|779176272|ref|NP_001292563.1|1.4e-3349.03SKP1-like protein 1A [Malus domestica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001232SKP1-like
IPR011333SKP1/BTB/POZ_sf
IPR016072Skp1_comp_dimer
IPR016073Skp1_comp_POZ
IPR016897SKP1
Vocabulary: Biological Process
TermDefinition
GO:0006511ubiquitin-dependent protein catabolic process
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
biological_process GO:0000084 mitotic S phase
biological_process GO:0016032 viral process
biological_process GO:0033209 tumor necrosis factor-mediated signaling pathway
biological_process GO:0002223 stimulatory C-type lectin receptor signaling pathway
biological_process GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
biological_process GO:0051439 regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle
biological_process GO:0007219 Notch signaling pathway
biological_process GO:0038061 NIK/NF-kappaB signaling
biological_process GO:0051437 positive regulation of ubiquitin-protein ligase activity involved in regulation of mitotic cell cycle transition
biological_process GO:0000080 mitotic G1 phase
biological_process GO:0000086 G2/M transition of mitotic cell cycle
biological_process GO:0000082 G1/S transition of mitotic cell cycle
biological_process GO:0038095 Fc-epsilon receptor signaling pathway
biological_process GO:0007623 circadian rhythm
biological_process GO:0031145 anaphase-promoting complex-dependent catabolic process
biological_process GO:0035518 histone H2A monoubiquitination
cellular_component GO:0019005 SCF ubiquitin ligase complex
cellular_component GO:0005575 cellular_component
cellular_component GO:0031467 Cul7-RING ubiquitin ligase complex
cellular_component GO:0005829 cytosol
cellular_component GO:0070062 extracellular exosome
cellular_component GO:0005654 nucleoplasm
cellular_component GO:0031519 PcG protein complex
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
molecular_function GO:0004842 ubiquitin-protein transferase activity
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU53566melon EST collection version 4.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C012407T1MELO3C012407T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU53566MU53566transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001232S-phase kinase-associated protein 1-likeSMARTSM00512skp1_3coord: 1..101
score: 1.3
IPR011333SKP1/BTB/POZ domainunknownSSF54695POZ domaincoord: 2..67
score: 3.66
IPR016072SKP1 component, dimerisationPFAMPF01466Skp1coord: 103..148
score: 2.7
IPR016072SKP1 component, dimerisationunknownSSF81382Skp1 dimerisation domain-likecoord: 73..149
score: 3.4
IPR016073SKP1 component, POZ domainPFAMPF03931Skp1_POZcoord: 4..64
score: 2.5
IPR016897S-phase kinase-associated protein 1PIRPIRSF028729SCF_Skpcoord: 1..152
score: 8.3
NoneNo IPR availableGENE3DG3DSA:3.30.710.10coord: 1..151
score: 4.1
NoneNo IPR availablePANTHERPTHR11165SKP1coord: 1..154
score: 3.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C012407Csa5G622630Cucumber (Chinese Long) v2cumeB377
MELO3C012407Cla020544Watermelon (97103) v1mewmB061
MELO3C012407ClCG05G021200Watermelon (Charleston Gray)mewcgB062
MELO3C012407Cla97C05G102870Watermelon (97103) v2mewmbB060
MELO3C012407Bhi07G000716Wax gourdmewgoB081
MELO3C012407CSPI05G26930Wild cucumber (PI 183967)cpimeB369
MELO3C012407Cucsa.308560Cucumber (Gy14) v1cgymeB508
MELO3C012407CmaCh04G013820Cucurbita maxima (Rimu)cmameB640
MELO3C012407CmoCh04G014530Cucurbita moschata (Rifu)cmomeB631
MELO3C012407Lsi04G000870Bottle gourd (USVL1VR-Ls)lsimeB281
MELO3C012407Cp4.1LG01g14620Cucurbita pepo (Zucchini)cpemeB363
MELO3C012407CsGy5G026380Cucumber (Gy14) v2cgybmeB319
MELO3C012407Carg01943Silver-seed gourdcarmeB0834
MELO3C012407CsaV3_5G036070Cucumber (Chinese Long) v3cucmeB381
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C012407Melon (DHL92) v3.5.1memeB030
MELO3C012407Cucumber (Gy14) v1cgymeB628
MELO3C012407Cucurbita maxima (Rimu)cmameB263
MELO3C012407Cucurbita maxima (Rimu)cmameB351
MELO3C012407Cucurbita maxima (Rimu)cmameB662
MELO3C012407Cucurbita moschata (Rifu)cmomeB252
MELO3C012407Cucurbita moschata (Rifu)cmomeB344
MELO3C012407Cucurbita moschata (Rifu)cmomeB652
MELO3C012407Watermelon (Charleston Gray)mewcgB072
MELO3C012407Watermelon (97103) v1mewmB047
MELO3C012407Watermelon (97103) v1mewmB070
MELO3C012407Cucurbita pepo (Zucchini)cpemeB024
MELO3C012407Cucurbita pepo (Zucchini)cpemeB161
MELO3C012407Cucurbita pepo (Zucchini)cpemeB385
MELO3C012407Bottle gourd (USVL1VR-Ls)lsimeB463
MELO3C012407Cucumber (Gy14) v2cgybmeB363
MELO3C012407Silver-seed gourdcarmeB0263
MELO3C012407Silver-seed gourdcarmeB0489
MELO3C012407Silver-seed gourdcarmeB0684
MELO3C012407Watermelon (97103) v2mewmbB071
MELO3C012407Wax gourdmewgoB062