CmaCh04G013820 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G013820
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein
Location	Cma_Chr04 : 7075046 .. 7075513 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAACTTTTCAACTAAAATCATCGGACAACAAAATTTTCAAGGTAAGCGAGGAGATCGCGATACAATCCGCAGTGATTAAGAACTTTCTTGAAGATTTCGGATCTGATAGCGACGAAATTGTGATTCCGCTGCCAAATGTTAGAGGAAGAATATTAGAGATGATGATCGAGTGGATGGTGAAGCACGTGGATGAGGAACTGACGAAAGAAGAAGTCGAAGATTGGGAGAACAAGTTTATGAATGATCTAAATATGGAAGTGACGACGGAGCTTGTAATGGCGGCCAATTACCTCGAAGTCATCGGATTGCTCCATCGAACTTGCCAGAGCATCGCCGATCATATTTCCGGGAAGAGTCCGGAGGAGATTCGGAGGATACTTAACATTACCAGTGATTTTACGCCGGAAGAAGAGGCGGAGATCCGACGACAGAATGGTTGGGTTCTTAATCCATCAACAAACTGA

mRNA sequence

ATGAGAACTTTTCAACTAAAATCATCGGACAACAAAATTTTCAAGGTAAGCGAGGAGATCGCGATACAATCCGCAGTGATTAAGAACTTTCTTGAAGATTTCGGATCTGATAGCGACGAAATTGTGATTCCGCTGCCAAATGTTAGAGGAAGAATATTAGAGATGATGATCGAGTGGATGGTGAAGCACGTGGATGAGGAACTGACGAAAGAAGAAGTCGAAGATTGGGAGAACAAGTTTATGAATGATCTAAATATGGAAGTGACGACGGAGCTTGTAATGGCGGCCAATTACCTCGAAGTCATCGGATTGCTCCATCGAACTTGCCAGAGCATCGCCGATCATATTTCCGGGAAGAGTCCGGAGGAGATTCGGAGGATACTTAACATTACCAGTGATTTTACGCCGGAAGAAGAGGCGGAGATCCGACGACAGAATGGTTGGGTTCTTAATCCATCAACAAACTGA

Coding sequence (CDS)

ATGAGAACTTTTCAACTAAAATCATCGGACAACAAAATTTTCAAGGTAAGCGAGGAGATCGCGATACAATCCGCAGTGATTAAGAACTTTCTTGAAGATTTCGGATCTGATAGCGACGAAATTGTGATTCCGCTGCCAAATGTTAGAGGAAGAATATTAGAGATGATGATCGAGTGGATGGTGAAGCACGTGGATGAGGAACTGACGAAAGAAGAAGTCGAAGATTGGGAGAACAAGTTTATGAATGATCTAAATATGGAAGTGACGACGGAGCTTGTAATGGCGGCCAATTACCTCGAAGTCATCGGATTGCTCCATCGAACTTGCCAGAGCATCGCCGATCATATTTCCGGGAAGAGTCCGGAGGAGATTCGGAGGATACTTAACATTACCAGTGATTTTACGCCGGAAGAAGAGGCGGAGATCCGACGACAGAATGGTTGGGTTCTTAATCCATCAACAAACTGA

Protein sequence

MRTFQLKSSDNKIFKVSEEIAIQSAVIKNFLEDFGSDSDEIVIPLPNVRGRILEMMIEWMVKHVDEELTKEEVEDWENKFMNDLNMEVTTELVMAANYLEVIGLLHRTCQSIADHISGKSPEEIRRILNITSDFTPEEEAEIRRQNGWVLNPSTN

Homology

[Close]

BLAST of CmaCh04G013820 vs. Swiss-Prot
Match: SKP1_RAT (S-phase kinase-associated protein 1 OS=Rattus norvegicus GN=Skp1 PE=1 SV=3)

HSP 1 Score: 130.6 bits (327), Expect = 1.5e-29
Identity = 70/160 (43.75%), Postives = 102/160 (63.75%), Query Frame = 1


Query: 1   MRTFQLKSSDNKIFKVSEEIAIQSAVIKNFLEDFGSDS--DEIVIPLPNVRGRILEMMIE 60
           M T +L+SSD +IF+V  EIA QS  IK  LED G D   D+  +PLPNV   IL+ +I+
Sbjct: 1   MPTIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQ 60

Query: 61  WMVKHVDEELTKEEVED----------WENKFMNDLNMEVTTELVMAANYLEVIGLLHRT 120
           W   H D+    E+ E+          W+ +F+  ++     EL++AANYL++ GLL  T
Sbjct: 61  WCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLK-VDQGTLFELILAANYLDIKGLLDVT 120

Query: 121 CQSIADHISGKSPEEIRRILNITSDFTPEEEAEIRRQNGW 149
           C+++A+ I GK+PEEIR+  NI +DFT EEEA++R++N W
Sbjct: 121 CKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQW 159

[Close]

BLAST of CmaCh04G013820 vs. Swiss-Prot
Match: SKP1_MOUSE (S-phase kinase-associated protein 1 OS=Mus musculus GN=Skp1 PE=1 SV=3)

HSP 1 Score: 130.6 bits (327), Expect = 1.5e-29
Identity = 70/160 (43.75%), Postives = 102/160 (63.75%), Query Frame = 1


Query: 1   MRTFQLKSSDNKIFKVSEEIAIQSAVIKNFLEDFGSDS--DEIVIPLPNVRGRILEMMIE 60
           M T +L+SSD +IF+V  EIA QS  IK  LED G D   D+  +PLPNV   IL+ +I+
Sbjct: 1   MPTIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQ 60

Query: 61  WMVKHVDEELTKEEVED----------WENKFMNDLNMEVTTELVMAANYLEVIGLLHRT 120
           W   H D+    E+ E+          W+ +F+  ++     EL++AANYL++ GLL  T
Sbjct: 61  WCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLK-VDQGTLFELILAANYLDIKGLLDVT 120

Query: 121 CQSIADHISGKSPEEIRRILNITSDFTPEEEAEIRRQNGW 149
           C+++A+ I GK+PEEIR+  NI +DFT EEEA++R++N W
Sbjct: 121 CKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQW 159

[Close]

BLAST of CmaCh04G013820 vs. Swiss-Prot
Match: SKP1_CHICK (S-phase kinase-associated protein 1 OS=Gallus gallus GN=SKP1 PE=2 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 4.4e-29
Identity = 69/160 (43.12%), Postives = 102/160 (63.75%), Query Frame = 1


Query: 1   MRTFQLKSSDNKIFKVSEEIAIQSAVIKNFLEDFGSDS--DEIVIPLPNVRGRILEMMIE 60
           M + +L+SSD +IF+V  EIA QS  IK  LED G D   D+  +PLPNV   IL+ +I+
Sbjct: 1   MPSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQ 60

Query: 61  WMVKHVDEELTKEEVED----------WENKFMNDLNMEVTTELVMAANYLEVIGLLHRT 120
           W   H D+    E+ E+          W+ +F+  ++     EL++AANYL++ GLL  T
Sbjct: 61  WCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLK-VDQGTLFELILAANYLDIKGLLDVT 120

Query: 121 CQSIADHISGKSPEEIRRILNITSDFTPEEEAEIRRQNGW 149
           C+++A+ I GK+PEEIR+  NI +DFT EEEA++R++N W
Sbjct: 121 CKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQW 159

[Close]

BLAST of CmaCh04G013820 vs. Swiss-Prot
Match: SKP1_CAVPO (S-phase kinase-associated protein 1 OS=Cavia porcellus GN=SKP1 PE=2 SV=2)

HSP 1 Score: 129.0 bits (323), Expect = 4.4e-29
Identity = 69/160 (43.12%), Postives = 102/160 (63.75%), Query Frame = 1


Query: 1   MRTFQLKSSDNKIFKVSEEIAIQSAVIKNFLEDFGSDS--DEIVIPLPNVRGRILEMMIE 60
           M + +L+SSD +IF+V  EIA QS  IK  LED G D   D+  +PLPNV   IL+ +I+
Sbjct: 1   MPSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQ 60

Query: 61  WMVKHVDEELTKEEVED----------WENKFMNDLNMEVTTELVMAANYLEVIGLLHRT 120
           W   H D+    E+ E+          W+ +F+  ++     EL++AANYL++ GLL  T
Sbjct: 61  WCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLK-VDQGTLFELILAANYLDIKGLLDVT 120

Query: 121 CQSIADHISGKSPEEIRRILNITSDFTPEEEAEIRRQNGW 149
           C+++A+ I GK+PEEIR+  NI +DFT EEEA++R++N W
Sbjct: 121 CKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQW 159

[Close]

BLAST of CmaCh04G013820 vs. Swiss-Prot
Match: SKP1_BOVIN (S-phase kinase-associated protein 1 OS=Bos taurus GN=SKP1 PE=2 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 4.4e-29
Identity = 69/160 (43.12%), Postives = 102/160 (63.75%), Query Frame = 1


Query: 1   MRTFQLKSSDNKIFKVSEEIAIQSAVIKNFLEDFGSDS--DEIVIPLPNVRGRILEMMIE 60
           M + +L+SSD +IF+V  EIA QS  IK  LED G D   D+  +PLPNV   IL+ +I+
Sbjct: 1   MPSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQ 60

Query: 61  WMVKHVDEELTKEEVED----------WENKFMNDLNMEVTTELVMAANYLEVIGLLHRT 120
           W   H D+    E+ E+          W+ +F+  ++     EL++AANYL++ GLL  T
Sbjct: 61  WCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLK-VDQGTLFELILAANYLDIKGLLDVT 120

Query: 121 CQSIADHISGKSPEEIRRILNITSDFTPEEEAEIRRQNGW 149
           C+++A+ I GK+PEEIR+  NI +DFT EEEA++R++N W
Sbjct: 121 CKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQW 159

[Close]

BLAST of CmaCh04G013820 vs. TrEMBL
Match: A0A0A0KRJ8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G622630 PE=3 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 7.8e-49
Identity = 96/153 (62.75%), Postives = 123/153 (80.39%), Query Frame = 1


Query: 1   MRTFQLKSSDNKIFKVSEEIAIQSAVIKNFLEDFGSDSDEIVIPLPNVRGRILEMMIEWM 60
           MR   L+SS+N+IFKVSEE+A QS V++ FLE+  S++DEI IPLPN+ GR+L M+IEW+
Sbjct: 1   MRIVNLRSSENEIFKVSEEVAKQSVVVRIFLEEDDSNNDEITIPLPNISGRLLGMVIEWI 60

Query: 61  VKHVDEELTKEEVEDWENKFMNDLNMEVTTELVMAANYLEVIGLLHRTCQSIADHISGKS 120
           V HV+E+L +E +  W+ KF+ DL++++  EL+MAANYLEV  L H TCQ +AD ISGKS
Sbjct: 61  VMHVEEKLAEEALHAWKTKFLEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120

Query: 121 PEEIRRILNITSDFTPEEEAEIRRQNGWVLNPS 154
           PEEIR+I NIT+DFTPEEEAEIRRQN WV  PS
Sbjct: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPS 153

[Close]

BLAST of CmaCh04G013820 vs. TrEMBL
Match: A0A0C9QLX3_9SPER (TSA: Wollemia nobilis Ref_Wollemi_Transcript_25686_867 transcribed RNA sequence OS=Wollemia nobilis PE=3 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.8e-29
Identity = 70/151 (46.36%), Postives = 103/151 (68.21%), Query Frame = 1


Query: 3   TFQLKSSDNKIFKVSEEIAIQSAVIKNFLEDFGSDSDEIVIPLPNVRGRILEMMIEWMVK 62
           T +LKSSD++IF+V E +A +S  IKN +ED G D+    +PL NV G+IL  ++E+   
Sbjct: 4   TLRLKSSDDQIFEVEEAVAFESQTIKNMIEDIGIDT---TVPLFNVSGKILARVVEYCKY 63

Query: 63  HVDEE-----LTKEEVEDWENKFMNDLNMEVTTELVMAANYLEVIGLLHRTCQSIADHIS 122
           HVD       L++E+++ W ++F+N ++     +L++AANYL +  LL  TCQ++AD I 
Sbjct: 64  HVDSRRDNSSLSEEDIKRWNDEFVN-VDQATLFDLILAANYLNIKSLLDLTCQTVADMIK 123

Query: 123 GKSPEEIRRILNITSDFTPEEEAEIRRQNGW 149
           GK+PEEIR+  NI +DFTPEEE EIR +N W
Sbjct: 124 GKTPEEIRKTFNIKNDFTPEEEEEIRHENAW 150

[Close]

BLAST of CmaCh04G013820 vs. TrEMBL
Match: D8TNK5_VOLCA (Putative uncharacterized protein OS=Volvox carteri f. nagariensis GN=VOLCADRAFT_73445 PE=3 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 4.0e-29
Identity = 72/156 (46.15%), Postives = 102/156 (65.38%), Query Frame = 1


Query: 5   QLKSSDNKIFKVSEEIAIQSAVIKNFLEDFGSDSDEIVIPLPNVRGRILEMMIEWMVKHV 64
           +L SSD ++F+V EE A QS  +KN +ED G+D     IPLPNV GRIL  +IE+   HV
Sbjct: 7   KLMSSDTQMFEVDEEAAFQSQTVKNLVEDAGTDD---AIPLPNVSGRILAKVIEYCKYHV 66

Query: 65  DEEL---------TKEEVEDWENKFMNDLNMEVTTELVMAANYLEVIGLLHRTCQSIADH 124
           + E          T++EV+ W+ +F+  ++     +L++AANYL + GLL  TCQ++A  
Sbjct: 67  EAEKKGADDKPMKTEDEVKRWDEEFVK-VDQATLFDLILAANYLNIKGLLDLTCQTVAQM 126

Query: 125 ISGKSPEEIRRILNITSDFTPEEEAEIRRQNGWVLN 152
           I GK+PEEIR+  NI +DFTPEEE E+RR+N W  +
Sbjct: 127 IKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFD 158

[Close]

BLAST of CmaCh04G013820 vs. TrEMBL
Match: A7S0E4_NEMVE (Predicted protein OS=Nematostella vectensis GN=v1g164893 PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 6.8e-29
Identity = 69/159 (43.40%), Postives = 103/159 (64.78%), Query Frame = 1


Query: 1   MRTFQLKSSDNKIFKVSEEIAIQSAVIKNFLEDFGSDSDEI-VIPLPNVRGRILEMMIEW 60
           M   +L+SSD +IF+V  EIA QS  IK  LED G D D+   +PLPNV   IL+ +I+W
Sbjct: 1   MPNIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDEDDDDAVPLPNVNAAILKKVIQW 60

Query: 61  MVKHVDE----------ELTKEEVEDWENKFMNDLNMEVTTELVMAANYLEVIGLLHRTC 120
             +H D+          E   +++E W+ +F+  ++     EL++AANYL++ GLL  TC
Sbjct: 61  ATRHKDDPPPPDDDENKEKRTDDIEPWDQEFLK-VDQGTLFELILAANYLDIKGLLDVTC 120

Query: 121 QSIADHISGKSPEEIRRILNITSDFTPEEEAEIRRQNGW 149
           +++A+ I GK+PEEIR+  NI +DFTPEEE ++R++N W
Sbjct: 121 KTVANMIKGKTPEEIRKTFNIKNDFTPEEEEQVRKENEW 158

[Close]

BLAST of CmaCh04G013820 vs. TrEMBL
Match: M0SL53_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=3 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 8.9e-29
Identity = 72/161 (44.72%), Postives = 104/161 (64.60%), Query Frame = 1


Query: 1   MRTFQLKSSDNKIFKVSEEIAIQSAVIKNFLEDFGSDSDEIVIPLPNVRGRILEMMIEWM 60
           M+T  LKSSD ++F+V E +A++S  IK+ +ED   D  E  IPLPNV  +IL  +IE+ 
Sbjct: 1   MKTITLKSSDGEVFEVDEAVAMESQTIKHMIED---DCAENGIPLPNVTSKILAKVIEYC 60

Query: 61  VKHVD-------------EELTKEEVEDWENKFMNDLNMEVTTELVMAANYLEVIGLLHR 120
            KHVD              +L  +E++ W+ +F+  ++     +L++AANYL + GLL  
Sbjct: 61  KKHVDASAAASSKSPDDASKLADDELKSWDAEFVK-VDQATLFDLILAANYLNIKGLLDL 120

Query: 121 TCQSIADHISGKSPEEIRRILNITSDFTPEEEAEIRRQNGW 149
           TCQ++AD I GK+PEEIR+  NI +DFTPEEE E+RR+N W
Sbjct: 121 TCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQW 157

[Close]

BLAST of CmaCh04G013820 vs. TAIR10
Match: AT4G34210.1 (AT4G34210.1 SKP1-like 11)

HSP 1 Score: 122.9 bits (307), Expect = 1.8e-28
Identity = 70/146 (47.95%), Postives = 95/146 (65.07%), Query Frame = 1


Query: 6   LKSSDNKIFKVSEEIAIQSAVIKNFLEDFGSDSDEIVIPLPNVRGRILEMMIEWMVKH-V 65
           L SSD + F+V E +AIQS  I + +ED   D     IPL NV  +IL  +IE+  KH V
Sbjct: 8   LMSSDGQSFEVEEAVAIQSQTIAHMVED---DCVADGIPLANVESKILVKVIEYCKKHHV 67

Query: 66  DEE--LTKEEVEDWENKFMNDLNMEVTTELVMAANYLEVIGLLHRTCQSIADHISGKSPE 125
           DE   +++E++ +W+ KFM DL      EL++AANYL +  LL  TCQ++AD I GK+PE
Sbjct: 68  DEANPISEEDLNNWDEKFM-DLEQSTIFELILAANYLNIKSLLDLTCQTVADMIKGKTPE 127

Query: 126 EIRRILNITSDFTPEEEAEIRRQNGW 149
           EIR   NI +DFTPEEE  +R++N W
Sbjct: 128 EIRSTFNIENDFTPEEEEAVRKENQW 149

[Close]

BLAST of CmaCh04G013820 vs. TAIR10
Match: AT5G42190.1 (AT5G42190.1 E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein)

HSP 1 Score: 122.1 bits (305), Expect = 3.0e-28
Identity = 68/169 (40.24%), Postives = 104/169 (61.54%), Query Frame = 1


Query: 1   MRTFQLKSSDNKIFKVSEEIAIQSAVIKNFLEDFGSDSDEIVIPLPNVRGRILEMMIEWM 60
           +R   LKSSD + F++ E +A++S  IK+ +ED  +D+    IPLPNV  +IL  +IE+ 
Sbjct: 4   VRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNG---IPLPNVTSKILSKVIEYC 63

Query: 61  VKHVD----EELTK-----------------EEVEDWENKFMNDLNMEVTTELVMAANYL 120
            +HV+     E T                  E+++ W+++F+  ++     +L++AANYL
Sbjct: 64  KRHVEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIK-VDQGTLFDLILAANYL 123

Query: 121 EVIGLLHRTCQSIADHISGKSPEEIRRILNITSDFTPEEEAEIRRQNGW 149
            + GLL  TCQ++AD I GK+PEEIR+  NI +DFTPEEE E+RR+N W
Sbjct: 124 NIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQW 168

[Close]

BLAST of CmaCh04G013820 vs. TAIR10
Match: AT4G34470.1 (AT4G34470.1 SKP1-like 12)

HSP 1 Score: 120.6 bits (301), Expect = 8.8e-28
Identity = 69/146 (47.26%), Postives = 93/146 (63.70%), Query Frame = 1


Query: 6   LKSSDNKIFKVSEEIAIQSAVIKNFLEDFGSDSDEIVIPLPNVRGRILEMMIEWMVK-HV 65
           L SSD + F+V E +AIQS  I + +ED   D     IPL NV  +IL  +IE+  K HV
Sbjct: 8   LMSSDGQSFEVEEAVAIQSQTIAHMVED---DCVADGIPLANVESKILVKVIEYCKKYHV 67

Query: 66  DEE--LTKEEVEDWENKFMNDLNMEVTTELVMAANYLEVIGLLHRTCQSIADHISGKSPE 125
           DE   +++E++  W+ KFM DL      EL++AANYL +  L   TCQ++AD I GK+PE
Sbjct: 68  DEANPISEEDLNKWDEKFM-DLEQSTIFELILAANYLNIKSLFDLTCQTVADMIKGKTPE 127

Query: 126 EIRRILNITSDFTPEEEAEIRRQNGW 149
           EIR   NI +DFTPEEE  +R++N W
Sbjct: 128 EIRSTFNIENDFTPEEEEAVRKENQW 149

[Close]

BLAST of CmaCh04G013820 vs. TAIR10
Match: AT1G20140.1 (AT1G20140.1 SKP1-like 4)

HSP 1 Score: 119.4 bits (298), Expect = 2.0e-27
Identity = 62/155 (40.00%), Postives = 100/155 (64.52%), Query Frame = 1


Query: 6   LKSSDNKIFKVSEEIAIQSAVIKNFLEDFGSDSDEIVIPLPNVRGRILEMMIEWMVKHVD 65
           LKSSD + F++ E +A++S  IK+ +ED  +D+    IPLPNV G IL  +IE+  KHV+
Sbjct: 10  LKSSDGESFEIEEAVAVKSQTIKHMIEDDCADNG---IPLPNVTGAILAKVIEYCKKHVE 69

Query: 66  E------------ELTKEEVEDWENKFMNDLNMEVTTELVMAANYLEVIGLLHRTCQSIA 125
                            +E+++W+++F+  ++     +L++AANYL + GLL  TC+++A
Sbjct: 70  AAAEAGGDKDFYGSAENDELKNWDSEFVK-VDQPTLFDLILAANYLNIGGLLDLTCKAVA 129

Query: 126 DHISGKSPEEIRRILNITSDFTPEEEAEIRRQNGW 149
           D + GK+PE++R   NI +D+TPEEEAE+R +N W
Sbjct: 130 DQMRGKTPEQMRAHFNIKNDYTPEEEAEVRNENKW 160

[Close]

BLAST of CmaCh04G013820 vs. TAIR10
Match: AT3G25650.1 (AT3G25650.1 SKP1-like 15)

HSP 1 Score: 119.4 bits (298), Expect = 2.0e-27
Identity = 67/166 (40.36%), Postives = 100/166 (60.24%), Query Frame = 1


Query: 6   LKSSDNKIFKVSEEIAIQSAVIKNFLEDFGSDSDEIVIPLPNVRGRILEMMIEWMVKHVD 65
           L SSD + F+V E +A +  ++K+ LED   D     IPL NV G IL +++E+  KHVD
Sbjct: 8   LTSSDGESFQVEEVVARKLQIVKHLLED---DCVINEIPLQNVTGNILSIVLEYCKKHVD 67

Query: 66  EEL----------------TKEEVEDWENKFMNDLNMEVTTELVMAANYLEVIGLLHRTC 125
           + +                 K+ ++ W+ +FM +++ME   +L++AANYL V GLL  TC
Sbjct: 68  DVVDDDASEEPKKKKPDDEAKQNLDAWDAEFMKNIDMETIFKLILAANYLNVEGLLGLTC 127

Query: 126 QSIADHISGKSPEEIRRILNITSDFTPEEEAE-IRRQNGWVLNPST 155
           Q++AD+I  K+PEE+R + NI +DFT EEE E IR++N W     T
Sbjct: 128 QTVADYIKDKTPEEVRELFNIENDFTHEEEEEAIRKENAWAFEADT 170

[Close]

BLAST of CmaCh04G013820 vs. NCBI nr
Match: gi|659091990|ref|XP_008446842.1| (PREDICTED: SKP1-like protein 12 [Cucumis melo])

HSP 1 Score: 206.8 bits (525), Expect = 2.7e-50
Identity = 97/153 (63.40%), Postives = 124/153 (81.05%), Query Frame = 1


Query: 1   MRTFQLKSSDNKIFKVSEEIAIQSAVIKNFLEDFGSDSDEIVIPLPNVRGRILEMMIEWM 60
           MRT  L+SS+N+IFKVSEE+A QS V++NFLE+  S+ DEI IPLPN+ G++L M+IEW+
Sbjct: 1   MRTVNLRSSENEIFKVSEEVAKQSVVVRNFLEEDNSNGDEITIPLPNISGKLLGMVIEWI 60

Query: 61  VKHVDEELTKEEVEDWENKFMNDLNMEVTTELVMAANYLEVIGLLHRTCQSIADHISGKS 120
             HV+E+L +E++  W+ KFM DL++++  EL+MAANYLEV  L H TCQ +AD ISGKS
Sbjct: 61  AMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120

Query: 121 PEEIRRILNITSDFTPEEEAEIRRQNGWVLNPS 154
           PEEIR+I NIT+DFTPEEEAEIRRQN WV  PS
Sbjct: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPS 153

[Close]

BLAST of CmaCh04G013820 vs. NCBI nr
Match: gi|449449372|ref|XP_004142439.1| (PREDICTED: SKP1-like protein 14 [Cucumis sativus])

HSP 1 Score: 201.4 bits (511), Expect = 1.1e-48
Identity = 96/153 (62.75%), Postives = 123/153 (80.39%), Query Frame = 1


Query: 1   MRTFQLKSSDNKIFKVSEEIAIQSAVIKNFLEDFGSDSDEIVIPLPNVRGRILEMMIEWM 60
           MR   L+SS+N+IFKVSEE+A QS V++ FLE+  S++DEI IPLPN+ GR+L M+IEW+
Sbjct: 1   MRIVNLRSSENEIFKVSEEVAKQSVVVRIFLEEDDSNNDEITIPLPNISGRLLGMVIEWI 60

Query: 61  VKHVDEELTKEEVEDWENKFMNDLNMEVTTELVMAANYLEVIGLLHRTCQSIADHISGKS 120
           V HV+E+L +E +  W+ KF+ DL++++  EL+MAANYLEV  L H TCQ +AD ISGKS
Sbjct: 61  VMHVEEKLAEEALHAWKTKFLEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120

Query: 121 PEEIRRILNITSDFTPEEEAEIRRQNGWVLNPS 154
           PEEIR+I NIT+DFTPEEEAEIRRQN WV  PS
Sbjct: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPS 153

[Close]

BLAST of CmaCh04G013820 vs. NCBI nr
Match: gi|302832616|ref|XP_002947872.1| (hypothetical protein VOLCADRAFT_73445 [Volvox carteri f. nagariensis])

HSP 1 Score: 136.0 bits (341), Expect = 5.8e-29
Identity = 72/156 (46.15%), Postives = 102/156 (65.38%), Query Frame = 1


Query: 5   QLKSSDNKIFKVSEEIAIQSAVIKNFLEDFGSDSDEIVIPLPNVRGRILEMMIEWMVKHV 64
           +L SSD ++F+V EE A QS  +KN +ED G+D     IPLPNV GRIL  +IE+   HV
Sbjct: 7   KLMSSDTQMFEVDEEAAFQSQTVKNLVEDAGTDD---AIPLPNVSGRILAKVIEYCKYHV 66

Query: 65  DEEL---------TKEEVEDWENKFMNDLNMEVTTELVMAANYLEVIGLLHRTCQSIADH 124
           + E          T++EV+ W+ +F+  ++     +L++AANYL + GLL  TCQ++A  
Sbjct: 67  EAEKKGADDKPMKTEDEVKRWDEEFVK-VDQATLFDLILAANYLNIKGLLDLTCQTVAQM 126

Query: 125 ISGKSPEEIRRILNITSDFTPEEEAEIRRQNGWVLN 152
           I GK+PEEIR+  NI +DFTPEEE E+RR+N W  +
Sbjct: 127 IKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFD 158

[Close]

BLAST of CmaCh04G013820 vs. NCBI nr
Match: gi|470131582|ref|XP_004301672.1| (PREDICTED: SKP1-like protein 1A [Fragaria vesca subsp. vesca])

HSP 1 Score: 136.0 bits (341), Expect = 5.8e-29
Identity = 69/145 (47.59%), Postives = 103/145 (71.03%), Query Frame = 1


Query: 6   LKSSDNKIFKVSEEIAIQSAVIKNFLEDFGSDSDEIVIPLPNVRGRILEMMIEWMVKHVD 65
           L+S+D + F++ E +A++S  IK+ +ED   D  E  IPLPNV+G IL  +IE+  KHV+
Sbjct: 24  LQSADGEPFEIEEVVALESQTIKHMVED---DCAENAIPLPNVKGAILAKVIEYCKKHVE 83

Query: 66  EELTKEEVEDWENKFMNDLNMEVTTELVMAANYLEVIGLLHRTCQSIADHISGKSPEEIR 125
           +    E+++ W+ +++N ++  V  +L++AANYL + GLL  TCQ +AD I GK+PEEIR
Sbjct: 84  D--AGEDLKAWDAEYVN-VDQNVLFDLILAANYLNIKGLLDLTCQKVADMIKGKTPEEIR 143

Query: 126 RILNITSDFTPEEEAEIRRQNGWVL 151
            + NIT+DFTPEEE E+RR+N W L
Sbjct: 144 TLFNITNDFTPEEEEEVRRENQWAL 162

[Close]

BLAST of CmaCh04G013820 vs. NCBI nr
Match: gi|156389287|ref|XP_001634923.1| (predicted protein [Nematostella vectensis])

HSP 1 Score: 135.2 bits (339), Expect = 9.8e-29
Identity = 69/159 (43.40%), Postives = 103/159 (64.78%), Query Frame = 1


Query: 1   MRTFQLKSSDNKIFKVSEEIAIQSAVIKNFLEDFGSDSDEI-VIPLPNVRGRILEMMIEW 60
           M   +L+SSD +IF+V  EIA QS  IK  LED G D D+   +PLPNV   IL+ +I+W
Sbjct: 1   MPNIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDEDDDDAVPLPNVNAAILKKVIQW 60

Query: 61  MVKHVDE----------ELTKEEVEDWENKFMNDLNMEVTTELVMAANYLEVIGLLHRTC 120
             +H D+          E   +++E W+ +F+  ++     EL++AANYL++ GLL  TC
Sbjct: 61  ATRHKDDPPPPDDDENKEKRTDDIEPWDQEFLK-VDQGTLFELILAANYLDIKGLLDVTC 120

Query: 121 QSIADHISGKSPEEIRRILNITSDFTPEEEAEIRRQNGW 149
           +++A+ I GK+PEEIR+  NI +DFTPEEE ++R++N W
Sbjct: 121 KTVANMIKGKTPEEIRKTFNIKNDFTPEEEEQVRKENEW 158

The following BLAST results are available for this feature:

BLAST of CmaCh04G013820 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SKP1_RAT	1.5e-29	43.75	S-phase kinase-associated protein 1 OS=Rattus norvegicus GN=Skp1 PE=1 SV=3	[more]
SKP1_MOUSE	1.5e-29	43.75	S-phase kinase-associated protein 1 OS=Mus musculus GN=Skp1 PE=1 SV=3	[more]
SKP1_CHICK	4.4e-29	43.13	S-phase kinase-associated protein 1 OS=Gallus gallus GN=SKP1 PE=2 SV=1	[more]
SKP1_CAVPO	4.4e-29	43.13	S-phase kinase-associated protein 1 OS=Cavia porcellus GN=SKP1 PE=2 SV=2	[more]
SKP1_BOVIN	4.4e-29	43.13	S-phase kinase-associated protein 1 OS=Bos taurus GN=SKP1 PE=2 SV=1	[more]

BLAST of CmaCh04G013820 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRJ8_CUCSA	7.8e-49	62.75	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G622630 PE=3 SV=1	[more]
A0A0C9QLX3_9SPER	1.8e-29	46.36	TSA: Wollemia nobilis Ref_Wollemi_Transcript_25686_867 transcribed RNA sequence ...	[more]
D8TNK5_VOLCA	4.0e-29	46.15	Putative uncharacterized protein OS=Volvox carteri f. nagariensis GN=VOLCADRAFT_...	[more]
A7S0E4_NEMVE	6.8e-29	43.40	Predicted protein OS=Nematostella vectensis GN=v1g164893 PE=3 SV=1	[more]
M0SL53_MUSAM	8.9e-29	44.72	Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=3 SV=1	[more]

BLAST of CmaCh04G013820 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G34210.1	1.8e-28	47.95	SKP1-like 11	[more]
AT5G42190.1	3.0e-28	40.24	E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein	[more]
AT4G34470.1	8.8e-28	47.26	SKP1-like 12	[more]
AT1G20140.1	2.0e-27	40.00	SKP1-like 4	[more]
AT3G25650.1	2.0e-27	40.36	SKP1-like 15	[more]

BLAST of CmaCh04G013820 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659091990\|ref\|XP_008446842.1\|	2.7e-50	63.40	PREDICTED: SKP1-like protein 12 [Cucumis melo]	[more]
gi\|449449372\|ref\|XP_004142439.1\|	1.1e-48	62.75	PREDICTED: SKP1-like protein 14 [Cucumis sativus]	[more]
gi\|302832616\|ref\|XP_002947872.1\|	5.8e-29	46.15	hypothetical protein VOLCADRAFT_73445 [Volvox carteri f. nagariensis]	[more]
gi\|470131582\|ref\|XP_004301672.1\|	5.8e-29	47.59	PREDICTED: SKP1-like protein 1A [Fragaria vesca subsp. vesca]	[more]
gi\|156389287\|ref\|XP_001634923.1\|	9.8e-29	43.40	predicted protein [Nematostella vectensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001232	SKP1-like
IPR011333	SKP1/BTB/POZ_sf
IPR016072	Skp1_comp_dimer
IPR016073	Skp1_comp_POZ
IPR016897	SKP1

Vocabulary: **Biological Process**
Term	Definition
GO:0006511	ubiquitin-dependent protein catabolic process

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031145	anaphase-promoting complex-dependent catabolic process
biological_process	GO:0051437	positive regulation of ubiquitin-protein ligase activity involved in regulation of mitotic cell cycle transition
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
biological_process	GO:0016032	viral process
biological_process	GO:0033209	tumor necrosis factor-mediated signaling pathway
biological_process	GO:0007623	circadian rhythm
biological_process	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
biological_process	GO:0051439	regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle
biological_process	GO:0002223	stimulatory C-type lectin receptor signaling pathway
biological_process	GO:0007219	Notch signaling pathway
biological_process	GO:0000084	mitotic S phase
biological_process	GO:0000080	mitotic G1 phase
biological_process	GO:0035518	histone H2A monoubiquitination
biological_process	GO:0000086	G2/M transition of mitotic cell cycle
biological_process	GO:0000082	G1/S transition of mitotic cell cycle
biological_process	GO:0038095	Fc-epsilon receptor signaling pathway
biological_process	GO:0038061	NIK/NF-kappaB signaling
cellular_component	GO:0019005	SCF ubiquitin ligase complex
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0070062	extracellular exosome
cellular_component	GO:0031519	PcG protein complex
cellular_component	GO:0005654	nucleoplasm
cellular_component	GO:0005829	cytosol
cellular_component	GO:0031467	Cul7-RING ubiquitin ligase complex
molecular_function	GO:0005515	protein binding
molecular_function	GO:0004842	ubiquitin-protein transferase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G013820.1	CmaCh04G013820.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001232	S-phase kinase-associated protein 1-like	SMART	SM00512	skp1_3	coord: 1..101 score: 1.0
IPR011333	SKP1/BTB/POZ domain	unknown	SSF54695	POZ domain	coord: 3..67 score: 3.66
IPR016072	SKP1 component, dimerisation	PFAM	PF01466	Skp1	coord: 103..148 score: 1.1
IPR016072	SKP1 component, dimerisation	unknown	SSF81382	Skp1 dimerisation domain-like	coord: 74..149 score: 3.53
IPR016073	SKP1 component, POZ domain	PFAM	PF03931	Skp1_POZ	coord: 4..64 score: 3.1
IPR016897	S-phase kinase-associated protein 1	PIR	PIRSF028729	SCF_Skp	coord: 1..152 score: 3.3
None	No IPR available	GENE3D	G3DSA:3.30.710.10		coord: 1..150 score: 1.5
None	No IPR available	PANTHER	PTHR11165	SKP1	coord: 1..154 score: 2.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G013820	Cucsa.308560	Cucumber (Gy14) v1	cgycmaB0850
CmaCh04G013820	Cla020544	Watermelon (97103) v1	cmawmB699
CmaCh04G013820	Csa5G622630	Cucumber (Chinese Long) v2	cmacuB748
CmaCh04G013820	MELO3C012407	Melon (DHL92) v3.5.1	cmameB640
CmaCh04G013820	ClCG05G021200	Watermelon (Charleston Gray)	cmawcgB655
CmaCh04G013820	CSPI05G26930	Wild cucumber (PI 183967)	cmacpiB755
CmaCh04G013820	CmoCh04G014530	Cucurbita moschata (Rifu)	cmacmoB728
CmaCh04G013820	Lsi04G000870	Bottle gourd (USVL1VR-Ls)	cmalsiB669
CmaCh04G013820	Cp4.1LG01g14620	Cucurbita pepo (Zucchini)	cmacpeB720
CmaCh04G013820	MELO3C012407.2	Melon (DHL92) v3.6.1	cmamedB726
CmaCh04G013820	CsaV3_5G036070	Cucumber (Chinese Long) v3	cmacucB0885
CmaCh04G013820	Cla97C05G102870	Watermelon (97103) v2	cmawmbB758
CmaCh04G013820	Bhi07G000716	Wax gourd	cmawgoB0903
CmaCh04G013820	CsGy5G026380	Cucumber (Gy14) v2	cgybcmaB672
CmaCh04G013820	Carg01943	Silver-seed gourd	carcmaB1170

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G013820	Cucurbita moschata (Rifu)	cmacmoB706
CmaCh04G013820	Cucurbita moschata (Rifu)	cmacmoB740
CmaCh04G013820	Watermelon (Charleston Gray)	cmawcgB679
CmaCh04G013820	Watermelon (97103) v1	cmawmB667
CmaCh04G013820	Cucurbita pepo (Zucchini)	cmacpeB700
CmaCh04G013820	Cucurbita pepo (Zucchini)	cmacpeB712
CmaCh04G013820	Cucurbita pepo (Zucchini)	cmacpeB734
CmaCh04G013820	Bottle gourd (USVL1VR-Ls)	cmalsiB706
CmaCh04G013820	Silver-seed gourd	carcmaB0370
CmaCh04G013820	Silver-seed gourd	carcmaB0673
CmaCh04G013820	Silver-seed gourd	carcmaB0966
CmaCh04G013820	Watermelon (97103) v2	cmawmbB787
CmaCh04G013820	Wax gourd	cmawgoB0873
CmaCh04G013820	Cucurbita maxima (Rimu)	cmacmaB402
CmaCh04G013820	Cucurbita maxima (Rimu)	cmacmaB536