MELO3C012407.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C012407.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionSKP1-like protein 12
Locationchr10 : 670514 .. 671673 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTTGGAATTAAATTCCGAAAAGGAATGTGAGTTGGGAATTGATCAAAGAAGTTCCCCTAAAACAAAAACCCTAATCCCTATAAATACGGCCATTCATCGAATCAATTAATTCATCCATTCATCTTCGAGAAATTCCCAAATTCATATCTGTTTCTTCGATTCCATTCTTTGATTGATCATCAAATATGAGGACTGTTAACCTAAGATCATCTGAGAACGAGATTTTCAAGGTGAGTGAGGAGGTCGCGAAGCAATCAGTGGTGGTTCGTAACTTTCTTGAAGAGGACAATTCCAATGGCGATGAAATCACGATTCCGCTGCCGAATATCAGTGGAAAATTGCTGGGAATGGTGATCGAGTGGATTGCGATGCATGTCGAGGAAAAATTAGCAGAGGAAGATCTTCATGCTTGGAAAACCAAGTTCATGGAGGATCTGGATTTGGATTTGTTGTTTGAGCTTATAATGGCTGCCAATTACCTGGAAGTTACCGATTTATTTCATGCAACTTGCCAATGTGTCGCTGATAAAATCTCCGGAAAGAGTCCGGAGGAGATTCGGAAGATCTTTAACATCACGAATGATTTTACACCTGAAGAAGAGGCTGAGATTCGACGCCAGAATGCTTGGGTCTTCGAACCATCCGGTAGCGGTAGCACCAGCGGCAGTAAATAAATTTTTGATTTCGCTAACTTTTAGTTCATGTTTTTGAGGAAAAAACAAGATGGGTGTCAATAGAATATATTAGAAATATTAAAGATTCATGGTTTACTATTTGCTGTTTTCAAATTTTTGAGGCAATCCATGAGTTTTTGTTTTCAAATGTTAATGTTCTTGCTGGAAAAAATACTGATGTGTCGCAATATTATTAATTTCTATGTTGAAACCTTTCTTTATTTGAAGATATTCTACATCCATCTTTTCTAAACTTAATCATAATAATACATCAAAGTATTGATCTTTAAATGAATCTGTTCTTAGCTTTGATGGTTCTTGATGATTGGATAGAATATGATGATAGTAGAGATAGGTTTCTTTATAAATAACCACGTGGAAAAACCATTGATCTTAAAGGGAACTATTTAGAACTTTTTGTTTGTGACATAGCAGACAACCACTTGGGAATGATGAGAATAAATTATTATGAGCTTTGCTTTTAG

mRNA sequence

CTTTGGAATTAAATTCCGAAAAGGAATGTGAGTTGGGAATTGATCAAAGAAGTTCCCCTAAAACAAAAACCCTAATCCCTATAAATACGGCCATTCATCGAATCAATTAATTCATCCATTCATCTTCGAGAAATTCCCAAATTCATATCTGTTTCTTCGATTCCATTCTTTGATTGATCATCAAATATGAGGACTGTTAACCTAAGATCATCTGAGAACGAGATTTTCAAGGTGAGTGAGGAGGTCGCGAAGCAATCAGTGGTGGTTCGTAACTTTCTTGAAGAGGACAATTCCAATGGCGATGAAATCACGATTCCGCTGCCGAATATCAGTGGAAAATTGCTGGGAATGGTGATCGAGTGGATTGCGATGCATGTCGAGGAAAAATTAGCAGAGGAAGATCTTCATGCTTGGAAAACCAAGTTCATGGAGGATCTGGATTTGGATTTGTTGTTTGAGCTTATAATGGCTGCCAATTACCTGGAAGTTACCGATTTATTTCATGCAACTTGCCAATGTGTCGCTGATAAAATCTCCGGAAAGAGTCCGGAGGAGATTCGGAAGATCTTTAACATCACGAATGATTTTACACCTGAAGAAGAGGCTGAGATTCGACGCCAGAATGCTTGGGTCTTCGAACCATCCGGTAGCGGTAGCACCAGCGGCAGTAAATAAATTTTTGATTTCGCTAACTTTTAGTTCATGTTTTTGAGGAAAAAACAAGATGGGTGTCAATAGAATATATTAGAAATATTAAAGATTCATGGTTTACTATTTGCTGTTTTCAAATTTTTGAGGCAATCCATGAGTTTTTGTTTTCAAATGTTAATGTTCTTGCTGGAAAAAATACTGATGTGTCGCAATATTATTAATTTCTATGTTGAAACCTTTCTTTATTTGAAGATATTCTACATCCATCTTTTCTAAACTTAATCATAATAATACATCAAAGTATTGATCTTTAAATGAATCTGTTCTTAGCTTTGATGGTTCTTGATGATTGGATAGAATATGATGATAGTAGAGATAGGTTTCTTTATAAATAACCACGTGGAAAAACCATTGATCTTAAAGGGAACTATTTAGAACTTTTTGTTTGTGACATAGCAGACAACCACTTGGGAATGATGAGAATAAATTATTATGAGCTTTGCTTTTAG

Coding sequence (CDS)

ATGAGGACTGTTAACCTAAGATCATCTGAGAACGAGATTTTCAAGGTGAGTGAGGAGGTCGCGAAGCAATCAGTGGTGGTTCGTAACTTTCTTGAAGAGGACAATTCCAATGGCGATGAAATCACGATTCCGCTGCCGAATATCAGTGGAAAATTGCTGGGAATGGTGATCGAGTGGATTGCGATGCATGTCGAGGAAAAATTAGCAGAGGAAGATCTTCATGCTTGGAAAACCAAGTTCATGGAGGATCTGGATTTGGATTTGTTGTTTGAGCTTATAATGGCTGCCAATTACCTGGAAGTTACCGATTTATTTCATGCAACTTGCCAATGTGTCGCTGATAAAATCTCCGGAAAGAGTCCGGAGGAGATTCGGAAGATCTTTAACATCACGAATGATTTTACACCTGAAGAAGAGGCTGAGATTCGACGCCAGAATGCTTGGGTCTTCGAACCATCCGGTAGCGGTAGCACCAGCGGCAGTAAATAA

Protein sequence

MRTVNLRSSENEIFKVSEEVAKQSVVVRNFLEEDNSNGDEITIPLPNISGKLLGMVIEWIAMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKSPEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGSTSGSK
Homology
[Close]
BLAST of MELO3C012407.2 vs. NCBI nr
Match: XP_008446842.1 (PREDICTED: SKP1-like protein 12 [Cucumis melo])

HSP 1 Score: 321.2 bits (822), Expect = 2.0e-84
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0 

Query: 1   MRTVNLRSSENEIFKVSEEVAKQSVVVRNFLEEDNSNGDEITIPLPNISGKLLGMVIEWI 60
           MRTVNLRSSENEIFKVSEEVAKQSVVVRNFLEEDNSNGDEITIPLPNISGKLLGMVIEWI
Sbjct: 1   MRTVNLRSSENEIFKVSEEVAKQSVVVRNFLEEDNSNGDEITIPLPNISGKLLGMVIEWI 60

Query: 61  AMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120
           AMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS
Sbjct: 61  AMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120

Query: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGSTSGSK 163
           PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGSTSGSK
Sbjct: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGSTSGSK 162

[Close]
BLAST of MELO3C012407.2 vs. NCBI nr
Match: XP_004142439.1 (PREDICTED: SKP1-like protein 14 [Cucumis sativus] >KGN52248.1 hypothetical protein Csa_5G622630 [Cucumis sativus])

HSP 1 Score: 299.3 bits (765), Expect = 8.0e-78
Identity = 154/164 (93.90%), Postives = 157/164 (95.73%), Query Frame = 0 

Query: 1   MRTVNLRSSENEIFKVSEEVAKQSVVVRNFLEEDNSNGDEITIPLPNISGKLLGMVIEWI 60
           MR VNLRSSENEIFKVSEEVAKQSVVVR FLEED+SN DEITIPLPNISG+LLGMVIEWI
Sbjct: 1   MRIVNLRSSENEIFKVSEEVAKQSVVVRIFLEEDDSNNDEITIPLPNISGRLLGMVIEWI 60

Query: 61  AMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120
            MHVEEKLAEE LHAWKTKF+EDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS
Sbjct: 61  VMHVEEKLAEEALHAWKTKFLEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120

Query: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEP--SGSGSTSGSK 163
           PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEP  SGSGSTSGSK
Sbjct: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGSGSTSGSK 164

[Close]
BLAST of MELO3C012407.2 vs. NCBI nr
Match: XP_022989752.1 (S-phase kinase-associated protein 1-like [Cucurbita maxima])

HSP 1 Score: 207.6 bits (527), Expect = 3.2e-50
Identity = 97/153 (63.40%), Postives = 124/153 (81.05%), Query Frame = 0 

Query: 1   MRTVNLRSSENEIFKVSEEVAKQSVVVRNFLEEDNSNGDEITIPLPNISGKLLGMVIEWI 60
           MRT  L+SS+N+IFKVSEE+A QS V++NFLE+  S+ DEI IPLPN+ G++L M+IEW+
Sbjct: 1   MRTFQLKSSDNKIFKVSEEIAIQSAVIKNFLEDFGSDSDEIVIPLPNVRGRILEMMIEWM 60

Query: 61  AMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120
             HV+E+L +E++  W+ KFM DL++++  EL+MAANYLEV  L H TCQ +AD ISGKS
Sbjct: 61  VKHVDEELTKEEVEDWENKFMNDLNMEVTTELVMAANYLEVIGLLHRTCQSIADHISGKS 120

Query: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPS 154
           PEEIR+I NIT+DFTPEEEAEIRRQN WV  PS
Sbjct: 121 PEEIRRILNITSDFTPEEEAEIRRQNGWVLNPS 153

[Close]
BLAST of MELO3C012407.2 vs. NCBI nr
Match: XP_022956819.1 (S-phase kinase-associated protein 1-like [Cucurbita moschata])

HSP 1 Score: 203.8 bits (517), Expect = 4.6e-49
Identity = 95/153 (62.09%), Postives = 123/153 (80.39%), Query Frame = 0 

Query: 1   MRTVNLRSSENEIFKVSEEVAKQSVVVRNFLEEDNSNGDEITIPLPNISGKLLGMVIEWI 60
           MRT  L+SS+N+IFKVSEE+A QS V+++FLE+  S+ DEI IPLPN+SG++L +VIEWI
Sbjct: 1   MRTFQLKSSDNKIFKVSEEIAIQSAVIKSFLEDFGSDSDEIVIPLPNVSGRILEIVIEWI 60

Query: 61  AMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120
             H +++L +E++  W+ KFM DL++++  EL+MAANYLEV  L H TCQ +AD+ISGKS
Sbjct: 61  VKHADDELTKEEVQDWENKFMNDLNMEVTTELVMAANYLEVIGLLHRTCQSIADQISGKS 120

Query: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPS 154
           PEEIR+I NITNDFTPEEEAEIR QN W   PS
Sbjct: 121 PEEIRRILNITNDFTPEEEAEIREQNGWDLNPS 153

[Close]
BLAST of MELO3C012407.2 vs. NCBI nr
Match: XP_023549855.1 (S-phase kinase-associated protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 203.8 bits (517), Expect = 4.6e-49
Identity = 95/153 (62.09%), Postives = 123/153 (80.39%), Query Frame = 0 

Query: 1   MRTVNLRSSENEIFKVSEEVAKQSVVVRNFLEEDNSNGDEITIPLPNISGKLLGMVIEWI 60
           MRT  L+SS+N+IFKVSEE+A QS V+++FLE+  S+ DEI IPLPN+SG++L +VIEWI
Sbjct: 1   MRTFQLKSSDNKIFKVSEEIAIQSAVIKSFLEDFGSDSDEIVIPLPNVSGRILEIVIEWI 60

Query: 61  AMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120
             H +++L +E++  W+ KFM DL++++  EL+MAANYLEV  L H TCQ +AD+ISGKS
Sbjct: 61  VKHADDELTKEEVQDWENKFMNDLNMEVTTELVMAANYLEVIGLLHRTCQSIADQISGKS 120

Query: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPS 154
           PEEIR+I NITNDFTPEEEAEIR QN W   PS
Sbjct: 121 PEEIRRILNITNDFTPEEEAEIREQNGWDLNPS 153

[Close]
BLAST of MELO3C012407.2 vs. TAIR10
Match: AT1G75950.1 (S phase kinase-associated protein 1)

HSP 1 Score: 137.9 bits (346), Expect = 5.6e-33
Identity = 76/162 (46.91%), Postives = 102/162 (62.96%), Query Frame = 0 

Query: 2   RTVNLRSSENEIFKVSEEVAKQSVVVRNFLEED-NSNGDEITIPLPNISGKLLGMVIEWI 61
           + + L+SS+ E F+V E VA +S  + + +E+D   NG    +PLPN++ K+L  VIE+ 
Sbjct: 4   KKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNG----VPLPNVTSKILAKVIEYC 63

Query: 62  AMHVE-----------EKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATC 121
             HVE              +++DL AW   FM+ +D   LFELI+AANYL + +L   TC
Sbjct: 64  KRHVEAAASKAEAVEGAATSDDDLKAWDADFMK-IDQATLFELILAANYLNIKNLLDLTC 123

Query: 122 QCVADKISGKSPEEIRKIFNITNDFTPEEEAEIRRQNAWVFE 152
           Q VAD I GK+PEEIR  FNI NDFTPEEE E+RR+N W FE
Sbjct: 124 QTVADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160

[Close]
BLAST of MELO3C012407.2 vs. TAIR10
Match: AT4G34470.1 (SKP1-like 12)

HSP 1 Score: 135.2 bits (339), Expect = 3.6e-32
Identity = 76/154 (49.35%), Postives = 102/154 (66.23%), Query Frame = 0 

Query: 2   RTVNLRSSENEIFKVSEEVAKQSVVVRNFLEED-NSNGDEITIPLPNISGKLLGMVIEWI 61
           + + L SS+ + F+V E VA QS  + + +E+D  ++G    IPL N+  K+L  VIE+ 
Sbjct: 4   KMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADG----IPLANVESKILVKVIEYC 63

Query: 62  -AMHVEE--KLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKIS 121
              HV+E   ++EEDL+ W  KFM DL+   +FELI+AANYL +  LF  TCQ VAD I 
Sbjct: 64  KKYHVDEANPISEEDLNKWDEKFM-DLEQSTIFELILAANYLNIKSLFDLTCQTVADMIK 123

Query: 122 GKSPEEIRKIFNITNDFTPEEEAEIRRQNAWVFE 152
           GK+PEEIR  FNI NDFTPEEE  +R++N W FE
Sbjct: 124 GKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152

[Close]
BLAST of MELO3C012407.2 vs. TAIR10
Match: AT5G42190.1 (E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein)

HSP 1 Score: 134.4 bits (337), Expect = 6.2e-32
Identity = 75/173 (43.35%), Postives = 102/173 (58.96%), Query Frame = 0 

Query: 1   MRTVNLRSSENEIFKVSEEVAKQSVVVRNFLEED-NSNGDEITIPLPNISGKLLGMVIEW 60
           +R + L+SS+ E F++ E VA +S  +++ +E+D   NG    IPLPN++ K+L  VIE+
Sbjct: 4   VRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNG----IPLPNVTSKILSKVIEY 63

Query: 61  IAMHVE---------------------EKLAEEDLHAWKTKFMEDLDLDLLFELIMAANY 120
              HVE                           DL  W ++F++ +D   LF+LI+AANY
Sbjct: 64  CKRHVEAAEXXXXXXXXXXXXXXXXXXXXXXXXDLKTWDSEFIK-VDQGTLFDLILAANY 123

Query: 121 LEVTDLFHATCQCVADKISGKSPEEIRKIFNITNDFTPEEEAEIRRQNAWVFE 152
           L +  L   TCQ VAD I GK+PEEIRK FNI NDFTPEEE E+RR+N W FE
Sbjct: 124 LNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171

[Close]
BLAST of MELO3C012407.2 vs. TAIR10
Match: AT4G34210.1 (SKP1-like 11)

HSP 1 Score: 132.5 bits (332), Expect = 2.3e-31
Identity = 75/154 (48.70%), Postives = 101/154 (65.58%), Query Frame = 0 

Query: 2   RTVNLRSSENEIFKVSEEVAKQSVVVRNFLEED-NSNGDEITIPLPNISGKLLGMVIEWI 61
           + + L SS+ + F+V E VA QS  + + +E+D  ++G    IPL N+  K+L  VIE+ 
Sbjct: 4   KMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADG----IPLANVESKILVKVIEYC 63

Query: 62  AM-HVEE--KLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKIS 121
              HV+E   ++EEDL+ W  KFM DL+   +FELI+AANYL +  L   TCQ VAD I 
Sbjct: 64  KKHHVDEANPISEEDLNNWDEKFM-DLEQSTIFELILAANYLNIKSLLDLTCQTVADMIK 123

Query: 122 GKSPEEIRKIFNITNDFTPEEEAEIRRQNAWVFE 152
           GK+PEEIR  FNI NDFTPEEE  +R++N W FE
Sbjct: 124 GKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152

[Close]
BLAST of MELO3C012407.2 vs. TAIR10
Match: AT2G03170.1 (SKP1-like 14)

HSP 1 Score: 130.6 bits (327), Expect = 8.9e-31
Identity = 65/146 (44.52%), Postives = 99/146 (67.81%), Query Frame = 0 

Query: 6   LRSSENEIFKVSEEVAKQSVVVRNFLEEDNSNGDEITIPLPNISGKLLGMVIEWIAMHVE 65
           L SS+ E F+V E VA++  +V + +E+D    +   +PL N++GK+L +V+E+   HV 
Sbjct: 8   LSSSDGESFEVEEAVARKLKIVEHMIEDDCVVTE---VPLQNVTGKILSIVVEYCKKHVV 67

Query: 66  EKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKSPEEIR 125
           ++ ++E    W  +FM+  D   +F+L++AANYL +  L   + Q VAD+I  K+PEEIR
Sbjct: 68  DEESDE-FKTWDEEFMKKFDQPTVFQLLLAANYLNIKGLLDLSAQTVADRIKDKTPEEIR 127

Query: 126 KIFNITNDFTPEEEAEIRRQNAWVFE 152
           +IFNI NDFTPEEEA +R++NAW FE
Sbjct: 128 EIFNIENDFTPEEEAAVRKENAWAFE 149

[Close]
BLAST of MELO3C012407.2 vs. Swiss-Prot
Match: sp|Q39255|SKP1A_ARATH (SKP1-like protein 1A OS=Arabidopsis thaliana OX=3702 GN=SKP1A PE=1 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.0e-31
Identity = 76/162 (46.91%), Postives = 102/162 (62.96%), Query Frame = 0 

Query: 2   RTVNLRSSENEIFKVSEEVAKQSVVVRNFLEED-NSNGDEITIPLPNISGKLLGMVIEWI 61
           + + L+SS+ E F+V E VA +S  + + +E+D   NG    +PLPN++ K+L  VIE+ 
Sbjct: 4   KKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNG----VPLPNVTSKILAKVIEYC 63

Query: 62  AMHVE-----------EKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATC 121
             HVE              +++DL AW   FM+ +D   LFELI+AANYL + +L   TC
Sbjct: 64  KRHVEAAASKAEAVEGAATSDDDLKAWDADFMK-IDQATLFELILAANYLNIKNLLDLTC 123

Query: 122 QCVADKISGKSPEEIRKIFNITNDFTPEEEAEIRRQNAWVFE 152
           Q VAD I GK+PEEIR  FNI NDFTPEEE E+RR+N W FE
Sbjct: 124 QTVADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160

[Close]
BLAST of MELO3C012407.2 vs. Swiss-Prot
Match: sp|Q9SY65|ASK18_ARATH (SKP1-like protein 18 OS=Arabidopsis thaliana OX=3702 GN=ASK18 PE=1 SV=2)

HSP 1 Score: 136.7 bits (343), Expect = 2.2e-31
Identity = 71/152 (46.71%), Postives = 103/152 (67.76%), Query Frame = 0 

Query: 6   LRSSENEIFKVSEEVAKQSVVVRNFLEEDNSNGDEITIPLPNISGKLLGMVIEWIAMHV- 65
           L SS+ E F++ E VA++ +++ + + EDN  G+   IPL N++G +L  +IE+  MHV 
Sbjct: 8   LTSSDGESFEIDEAVARKFLIIVHMM-EDNCAGE--AIPLENVTGDILSKIIEYAKMHVN 67

Query: 66  ------EEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISG 125
                 E++ A+++L +W  KFME LDL+ +F++I+AANYL    L     Q VAD I  
Sbjct: 68  EPSEEDEDEEAKKNLDSWDAKFMEKLDLETIFKIILAANYLNFEGLLGFASQTVADYIKD 127

Query: 126 KSPEEIRKIFNITNDFTPEEEAEIRRQNAWVF 151
           K+PEE+R+IFNI NDFTPEEE EIR++NAW F
Sbjct: 128 KTPEEVREIFNIENDFTPEEEEEIRKENAWTF 156

[Close]
BLAST of MELO3C012407.2 vs. Swiss-Prot
Match: sp|O65674|ASK12_ARATH (SKP1-like protein 12 OS=Arabidopsis thaliana OX=3702 GN=ASK12 PE=1 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 6.5e-31
Identity = 76/154 (49.35%), Postives = 102/154 (66.23%), Query Frame = 0 

Query: 2   RTVNLRSSENEIFKVSEEVAKQSVVVRNFLEED-NSNGDEITIPLPNISGKLLGMVIEWI 61
           + + L SS+ + F+V E VA QS  + + +E+D  ++G    IPL N+  K+L  VIE+ 
Sbjct: 4   KMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADG----IPLANVESKILVKVIEYC 63

Query: 62  -AMHVEE--KLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKIS 121
              HV+E   ++EEDL+ W  KFM DL+   +FELI+AANYL +  LF  TCQ VAD I 
Sbjct: 64  KKYHVDEANPISEEDLNKWDEKFM-DLEQSTIFELILAANYLNIKSLFDLTCQTVADMIK 123

Query: 122 GKSPEEIRKIFNITNDFTPEEEAEIRRQNAWVFE 152
           GK+PEEIR  FNI NDFTPEEE  +R++N W FE
Sbjct: 124 GKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152

[Close]
BLAST of MELO3C012407.2 vs. Swiss-Prot
Match: sp|Q9FHW7|SKP1B_ARATH (SKP1-like protein 1B OS=Arabidopsis thaliana OX=3702 GN=SKP1B PE=1 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.1e-30
Identity = 75/173 (43.35%), Postives = 102/173 (58.96%), Query Frame = 0 

Query: 1   MRTVNLRSSENEIFKVSEEVAKQSVVVRNFLEED-NSNGDEITIPLPNISGKLLGMVIEW 60
           +R + L+SS+ E F++ E VA +S  +++ +E+D   NG    IPLPN++ K+L  VIE+
Sbjct: 4   VRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNG----IPLPNVTSKILSKVIEY 63

Query: 61  IAMHVE---------------------EKLAEEDLHAWKTKFMEDLDLDLLFELIMAANY 120
              HVE                           DL  W ++F++ +D   LF+LI+AANY
Sbjct: 64  CKRHVEAAEXXXXXXXXXXXXXXXXXXXXXXXXDLKTWDSEFIK-VDQGTLFDLILAANY 123

Query: 121 LEVTDLFHATCQCVADKISGKSPEEIRKIFNITNDFTPEEEAEIRRQNAWVFE 152
           L +  L   TCQ VAD I GK+PEEIRK FNI NDFTPEEE E+RR+N W FE
Sbjct: 124 LNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171

[Close]
BLAST of MELO3C012407.2 vs. Swiss-Prot
Match: sp|Q6PL11|SKP1_ORYSJ (SKP1-like protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP1 PE=1 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 3.2e-30
Identity = 75/170 (44.12%), Postives = 99/170 (58.24%), Query Frame = 0 

Query: 2   RTVNLRSSENEIFKVSEEVAKQSVVVRNFLEEDNSNGDEITIPLPNISGKLLGMVIEWIA 61
           + + L+SS+ E F+V E VA +S  +R+ +E+D ++     IPLPN++ K+L  VIE+  
Sbjct: 8   KMITLKSSDGEEFEVEEAVAMESQTIRHMIEDDCADNG---IPLPNVNSKILSKVIEYCN 67

Query: 62  MHVE--------------------EKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEV 121
            HV                          EDL  W   F++ +D   LF+LI+AANYL +
Sbjct: 68  KHVHAXXXXXXXXXXXXXXXXXXXXXXXXEDLKNWDADFVK-VDQATLFDLILAANYLNI 127

Query: 122 TDLFHATCQCVADKISGKSPEEIRKIFNITNDFTPEEEAEIRRQNAWVFE 152
             L   TCQ VAD I GK+PEEIRK FNI NDFTPEEE EIRR+N W FE
Sbjct: 128 KGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEIRRENQWAFE 173

[Close]
BLAST of MELO3C012407.2 vs. TrEMBL
Match: tr|A0A1S3BGP6|A0A1S3BGP6_CUCME (SKP1-like protein 12 OS=Cucumis melo OX=3656 GN=LOC103489446 PE=3 SV=1)

HSP 1 Score: 321.2 bits (822), Expect = 1.3e-84
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0 

Query: 1   MRTVNLRSSENEIFKVSEEVAKQSVVVRNFLEEDNSNGDEITIPLPNISGKLLGMVIEWI 60
           MRTVNLRSSENEIFKVSEEVAKQSVVVRNFLEEDNSNGDEITIPLPNISGKLLGMVIEWI
Sbjct: 1   MRTVNLRSSENEIFKVSEEVAKQSVVVRNFLEEDNSNGDEITIPLPNISGKLLGMVIEWI 60

Query: 61  AMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120
           AMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS
Sbjct: 61  AMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120

Query: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGSTSGSK 163
           PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGSTSGSK
Sbjct: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGSTSGSK 162

[Close]
BLAST of MELO3C012407.2 vs. TrEMBL
Match: tr|A0A0A0KRJ8|A0A0A0KRJ8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G622630 PE=3 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 5.3e-78
Identity = 154/164 (93.90%), Postives = 157/164 (95.73%), Query Frame = 0 

Query: 1   MRTVNLRSSENEIFKVSEEVAKQSVVVRNFLEEDNSNGDEITIPLPNISGKLLGMVIEWI 60
           MR VNLRSSENEIFKVSEEVAKQSVVVR FLEED+SN DEITIPLPNISG+LLGMVIEWI
Sbjct: 1   MRIVNLRSSENEIFKVSEEVAKQSVVVRIFLEEDDSNNDEITIPLPNISGRLLGMVIEWI 60

Query: 61  AMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120
            MHVEEKLAEE LHAWKTKF+EDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS
Sbjct: 61  VMHVEEKLAEEALHAWKTKFLEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120

Query: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEP--SGSGSTSGSK 163
           PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEP  SGSGSTSGSK
Sbjct: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGSGSTSGSK 164

[Close]
BLAST of MELO3C012407.2 vs. TrEMBL
Match: tr|A0A251SVV4|A0A251SVV4_HELAN (Putative S-phase kinase-associated protein 1-like protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr13g0417561 PE=3 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 4.2e-35
Identity = 82/156 (52.56%), Postives = 112/156 (71.79%), Query Frame = 0 

Query: 2   RTVNLRSSENEIFKVSEEVAKQSVVVRNFLEEDNSNGDEITIPLPNISGKLLGMVIEWIA 61
           +T+ L++S+ E F+V E VA +S  +++ +E+D +N    TIPLPN++ K L MVIE+  
Sbjct: 5   KTIVLKTSDGETFEVEELVALESQTIKHMIEDDCANA---TIPLPNVTSKTLSMVIEFCK 64

Query: 62  MHVE------EKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADK 121
            HVE      +K AEEDL A+ ++F++ +D D LF+LI+AANYL +  L   TCQ  AD 
Sbjct: 65  KHVESTKSEDKKTAEEDLKAFDSEFVK-VDRDSLFDLILAANYLNIKSLLDLTCQTTADM 124

Query: 122 ISGKSPEEIRKIFNITNDFTPEEEAEIRRQNAWVFE 152
           I GK+PEEIR+IFNI NDFTPEEEAE+RR+NAW FE
Sbjct: 125 IKGKTPEEIREIFNIKNDFTPEEEAEVRRENAWAFE 156

[Close]
BLAST of MELO3C012407.2 vs. TrEMBL
Match: tr|A0A251RUT2|A0A251RUT2_HELAN (Putative S-phase kinase-associated protein 1-like, S-phase kinase-associated protein 1 OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr17g0570701 PE=3 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 2.7e-34
Identity = 79/156 (50.64%), Postives = 111/156 (71.15%), Query Frame = 0 

Query: 2   RTVNLRSSENEIFKVSEEVAKQSVVVRNFLEEDNSNGDEITIPLPNISGKLLGMVIEWIA 61
           +T+ L+SS+ E F+V E VA +S  +++ +E+D +N    TIPLPN++ K++ MVIE+  
Sbjct: 5   KTIVLKSSDGETFEVEEVVALESQTIKHMIEDDCAN---TTIPLPNVTSKIISMVIEYCK 64

Query: 62  MHV------EEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADK 121
            HV      ++K AEEDL  + ++F++ +D D LF+LI+AANYL +  L   TCQ  AD 
Sbjct: 65  KHVDSAKNEDKKTAEEDLKNFDSEFVK-VDKDTLFDLILAANYLNIKSLLDLTCQTAADM 124

Query: 122 ISGKSPEEIRKIFNITNDFTPEEEAEIRRQNAWVFE 152
           I GK+PEE+RK FNI NDFTPEEEAE+RR+NAW FE
Sbjct: 125 IKGKTPEEVRKTFNIKNDFTPEEEAELRRENAWAFE 156

[Close]
BLAST of MELO3C012407.2 vs. TrEMBL
Match: tr|A0A218XFG3|A0A218XFG3_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr004396 PE=3 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 8.0e-34
Identity = 79/159 (49.69%), Postives = 108/159 (67.92%), Query Frame = 0 

Query: 2   RTVNLRSSENEIFKVSEEVAKQSVVVRNFLEEDNSNGDEITIPLPNISGKLLGMVIEWIA 61
           + + LRSS+ E F+V E VA +S  +++ +E+D ++     IPLPN+S K+L  VIE+  
Sbjct: 7   KMITLRSSDGETFEVEESVAVESQTIKHMIEDDCADS---VIPLPNVSSKILSKVIEYCK 66

Query: 62  MHVE---------EKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCV 121
            HVE         +K AE+ L AW  +F++ +D   LF+LI+AANYL VT L ++TCQ V
Sbjct: 67  KHVESAAAAGTENDKTAEDTLKAWDAEFVK-VDQSTLFDLILAANYLNVTGLLNSTCQTV 126

Query: 122 ADKISGKSPEEIRKIFNITNDFTPEEEAEIRRQNAWVFE 152
           AD I GK+PEEIRK FNI NDFTPEEE ++RR+N W FE
Sbjct: 127 ADMIKGKTPEEIRKTFNIKNDFTPEEEEDVRRENQWAFE 161

The following BLAST results are available for this feature:
BLAST of MELO3C012407.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008446842.12.0e-84100.00PREDICTED: SKP1-like protein 12 [Cucumis melo][more]
XP_004142439.18.0e-7893.90PREDICTED: SKP1-like protein 14 [Cucumis sativus] >KGN52248.1 hypothetical prote... [more]
XP_022989752.13.2e-5063.40S-phase kinase-associated protein 1-like [Cucurbita maxima][more]
XP_022956819.14.6e-4962.09S-phase kinase-associated protein 1-like [Cucurbita moschata][more]
XP_023549855.14.6e-4962.09S-phase kinase-associated protein 1-like [Cucurbita pepo subsp. pepo][more]
BLAST of MELO3C012407.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G75950.15.6e-3346.91S phase kinase-associated protein 1[more]
AT4G34470.13.6e-3249.35SKP1-like 12[more]
AT5G42190.16.2e-3243.35E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein[more]
AT4G34210.12.3e-3148.70SKP1-like 11[more]
AT2G03170.18.9e-3144.52SKP1-like 14[more]
BLAST of MELO3C012407.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q39255|SKP1A_ARATH1.0e-3146.91SKP1-like protein 1A OS=Arabidopsis thaliana OX=3702 GN=SKP1A PE=1 SV=1[more]
sp|Q9SY65|ASK18_ARATH2.2e-3146.71SKP1-like protein 18 OS=Arabidopsis thaliana OX=3702 GN=ASK18 PE=1 SV=2[more]
sp|O65674|ASK12_ARATH6.5e-3149.35SKP1-like protein 12 OS=Arabidopsis thaliana OX=3702 GN=ASK12 PE=1 SV=1[more]
sp|Q9FHW7|SKP1B_ARATH1.1e-3043.35SKP1-like protein 1B OS=Arabidopsis thaliana OX=3702 GN=SKP1B PE=1 SV=1[more]
sp|Q6PL11|SKP1_ORYSJ3.2e-3044.12SKP1-like protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP1 PE=1 SV=1[more]
BLAST of MELO3C012407.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BGP6|A0A1S3BGP6_CUCME1.3e-84100.00SKP1-like protein 12 OS=Cucumis melo OX=3656 GN=LOC103489446 PE=3 SV=1[more]
tr|A0A0A0KRJ8|A0A0A0KRJ8_CUCSA5.3e-7893.90Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G622630 PE=3 SV=1[more]
tr|A0A251SVV4|A0A251SVV4_HELAN4.2e-3552.56Putative S-phase kinase-associated protein 1-like protein OS=Helianthus annuus O... [more]
tr|A0A251RUT2|A0A251RUT2_HELAN2.7e-3450.64Putative S-phase kinase-associated protein 1-like, S-phase kinase-associated pro... [more]
tr|A0A218XFG3|A0A218XFG3_PUNGR8.0e-3449.69Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr004396 PE=3 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006511ubiquitin-dependent protein catabolic process
Vocabulary: INTERPRO
TermDefinition
IPR036296SKP1-like_dim_sf
IPR011333SKP1/BTB/POZ_sf
IPR016073Skp1_comp_POZ
IPR016897SKP1
IPR016072Skp1_comp_dimer
IPR001232SKP1-like
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
biological_process GO:0000084 mitotic S phase
biological_process GO:0016032 viral process
biological_process GO:0033209 tumor necrosis factor-mediated signaling pathway
biological_process GO:0002223 stimulatory C-type lectin receptor signaling pathway
biological_process GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
biological_process GO:0051439 regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle
biological_process GO:0007219 Notch signaling pathway
biological_process GO:0038061 NIK/NF-kappaB signaling
biological_process GO:0051437 positive regulation of ubiquitin-protein ligase activity involved in regulation of mitotic cell cycle transition
biological_process GO:0000080 mitotic G1 phase
biological_process GO:0000086 G2/M transition of mitotic cell cycle
biological_process GO:0000082 G1/S transition of mitotic cell cycle
biological_process GO:0038095 Fc-epsilon receptor signaling pathway
biological_process GO:0007623 circadian rhythm
biological_process GO:0031145 anaphase-promoting complex-dependent catabolic process
biological_process GO:0035518 histone H2A monoubiquitination
cellular_component GO:0019005 SCF ubiquitin ligase complex
cellular_component GO:0005575 cellular_component
cellular_component GO:0031467 Cul7-RING ubiquitin ligase complex
cellular_component GO:0005829 cytosol
cellular_component GO:0070062 extracellular exosome
cellular_component GO:0005654 nucleoplasm
cellular_component GO:0031519 PcG protein complex
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
molecular_function GO:0004842 ubiquitin-protein transferase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C012407.2.1MELO3C012407.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001232S-phase kinase-associated protein 1-likeSMARTSM00512skp1_3coord: 1..101
e-value: 1.3E-27
score: 107.8
NoneNo IPR availableGENE3DG3DSA:3.30.710.10coord: 1..98
e-value: 6.1E-24
score: 86.3
NoneNo IPR availableGENE3DG3DSA:3.30.710.10coord: 99..151
e-value: 1.9E-28
score: 100.3
NoneNo IPR availablePANTHERPTHR11165:SF86SKP1-LIKE PROTEIN 10-RELATEDcoord: 3..149
NoneNo IPR availablePANTHERPTHR11165SKP1coord: 3..149
IPR016072SKP1 component, dimerisationPFAMPF01466Skp1coord: 103..148
e-value: 2.9E-24
score: 84.8
IPR016897S-phase kinase-associated protein 1PIRSFPIRSF028729SCF_Skpcoord: 1..152
e-value: 1.0E-52
score: 176.2
IPR016073SKP1 component, POZ domainPFAMPF03931Skp1_POZcoord: 4..64
e-value: 2.6E-14
score: 53.0
IPR011333SKP1/BTB/POZ domain superfamilySUPERFAMILYSSF54695POZ domaincoord: 2..67
IPR036296SKP1-like, dimerisation domain superfamilySUPERFAMILYSSF81382Skp1 dimerisation domain-likecoord: 73..149

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C012407.2Csa5G622630Cucumber (Chinese Long) v2cumedB359
MELO3C012407.2CSPI05G26930Wild cucumber (PI 183967)cpimedB363
MELO3C012407.2Cucsa.308560Cucumber (Gy14) v1cgymedB508
MELO3C012407.2CmaCh04G013820Cucurbita maxima (Rimu)cmamedB726
MELO3C012407.2CmoCh04G014530Cucurbita moschata (Rifu)cmomedB720
MELO3C012407.2Lsi04G000870Bottle gourd (USVL1VR-Ls)lsimedB297
MELO3C012407.2Cp4.1LG01g14620Cucurbita pepo (Zucchini)cpemedB423
MELO3C012407.2CsGy5G026380Cucumber (Gy14) v2cgybmedB318
MELO3C012407.2Cla020544Watermelon (97103) v1medwmB061
MELO3C012407.2ClCG05G021200Watermelon (Charleston Gray)medwcgB061
MELO3C012407.2Cla97C05G102870Watermelon (97103) v2medwmbB056
MELO3C012407.2Bhi07G000716Wax gourdmedwgoB081
MELO3C012407.2Carg01943Silver-seed gourdcarmedB0846
MELO3C012407.2CsaV3_5G036070Cucumber (Chinese Long) v3cucmedB375
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C012407.2Watermelon (97103) v2medwmbB066
MELO3C012407.2Wax gourdmedwgoB061
MELO3C012407.2Cucumber (Gy14) v2cgybmedB144
MELO3C012407.2Cucumber (Gy14) v2cgybmedB364
MELO3C012407.2Cucumber (Gy14) v1cgymedB502
MELO3C012407.2Cucumber (Gy14) v1cgymedB623
MELO3C012407.2Cucurbita maxima (Rimu)cmamedB297
MELO3C012407.2Cucurbita maxima (Rimu)cmamedB408
MELO3C012407.2Cucurbita maxima (Rimu)cmamedB749
MELO3C012407.2Cucurbita moschata (Rifu)cmomedB286
MELO3C012407.2Cucurbita moschata (Rifu)cmomedB395
MELO3C012407.2Cucurbita moschata (Rifu)cmomedB742
MELO3C012407.2Cucurbita moschata (Rifu)cmomedB837
MELO3C012407.2Cucurbita pepo (Zucchini)cpemedB028
MELO3C012407.2Cucurbita pepo (Zucchini)cpemedB190
MELO3C012407.2Cucurbita pepo (Zucchini)cpemedB446
MELO3C012407.2Cucurbita pepo (Zucchini)cpemedB512
MELO3C012407.2Melon (DHL92) v3.6.1medmedB028
MELO3C012407.2Bottle gourd (USVL1VR-Ls)lsimedB482
MELO3C012407.2Watermelon (Charleston Gray)medwcgB069
MELO3C012407.2Watermelon (97103) v1medwmB048
MELO3C012407.2Watermelon (97103) v1medwmB069
MELO3C012407.2Silver-seed gourdcarmedB0274
MELO3C012407.2Silver-seed gourdcarmedB0495
MELO3C012407.2Silver-seed gourdcarmedB0696