Carg01943 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg01943
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	E3 ubiquitin ligase complex SCF subunit sconC
Location	Cucurbita_argyrosperma_scaffold_003 : 1292891 .. 1293379 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAACTTTTCAACTAAAATCATCGGACAACAAAATTTTCAAGGTAAGCGAGGAGATCGCGATACAATCCGCAGTGATTAAGAGCTTTCTTGAAGATTTCGGATCTGATAGCGACGAAATTGTGATTCCGCTGCCAAATGTTAGCGGAAGAATATTAGAGATAGTGATTGAGTGGATCGTGAAGCACGCGAATGATGAACTGACGAAAGAAGAAGTCCAAGATTGGGAGAATAAGTTTATGAATGATCTAAATATGGAAGTGACGACGGAGCTTGTAATGGCGGCCAATTACCTCGAAGTCATCGGATTGCTCCATCGAACTTGCCAGAGCATCGCCAATCAAATTTCCGGCAAGAGTCCGGAGGAGATTCGGAGGATACTTAACATTACCAATGATTTTACGCCGGAAGAAGAGGCGGAGATCCGAGAACAGAATGGTTGGGATCCCAATCCATCAACAACGGACGACGGGATTTTTCCGATTTAA

mRNA sequence

ATGAGAACTTTTCAACTAAAATCATCGGACAACAAAATTTTCAAGGTAAGCGAGGAGATCGCGATACAATCCGCAGTGATTAAGAGCTTTCTTGAAGATTTCGGATCTGATAGCGACGAAATTGTGATTCCGCTGCCAAATGTTAGCGGAAGAATATTAGAGATAGTGATTGAGTGGATCGTGAAGCACGCGAATGATGAACTGACGAAAGAAGAAGTCCAAGATTGGGAGAATAAGTTTATGAATGATCTAAATATGGAAGTGACGACGGAGCTTGTAATGGCGGCCAATTACCTCGAAGTCATCGGATTGCTCCATCGAACTTGCCAGAGCATCGCCAATCAAATTTCCGGCAAGAGTCCGGAGGAGATTCGGAGGATACTTAACATTACCAATGATTTTACGCCGGAAGAAGAGGCGGAGATCCGAGAACAGAATGGTTGGGATCCCAATCCATCAACAACGGACGACGGGATTTTTCCGATTTAA

Coding sequence (CDS)

ATGAGAACTTTTCAACTAAAATCATCGGACAACAAAATTTTCAAGGTAAGCGAGGAGATCGCGATACAATCCGCAGTGATTAAGAGCTTTCTTGAAGATTTCGGATCTGATAGCGACGAAATTGTGATTCCGCTGCCAAATGTTAGCGGAAGAATATTAGAGATAGTGATTGAGTGGATCGTGAAGCACGCGAATGATGAACTGACGAAAGAAGAAGTCCAAGATTGGGAGAATAAGTTTATGAATGATCTAAATATGGAAGTGACGACGGAGCTTGTAATGGCGGCCAATTACCTCGAAGTCATCGGATTGCTCCATCGAACTTGCCAGAGCATCGCCAATCAAATTTCCGGCAAGAGTCCGGAGGAGATTCGGAGGATACTTAACATTACCAATGATTTTACGCCGGAAGAAGAGGCGGAGATCCGAGAACAGAATGGTTGGGATCCCAATCCATCAACAACGGACGACGGGATTTTTCCGATTTAA

Protein sequence

MRTFQLKSSDNKIFKVSEEIAIQSAVIKSFLEDFGSDSDEIVIPLPNVSGRILEIVIEWIVKHANDELTKEEVQDWENKFMNDLNMEVTTELVMAANYLEVIGLLHRTCQSIANQISGKSPEEIRRILNITNDFTPEEEAEIREQNGWDPNPSTTDDGIFPI

Homology

[Close]

BLAST of Carg01943 vs. NCBI nr
Match: XP_022956819.1 (S-phase kinase-associated protein 1-like [Cucurbita moschata])

HSP 1 Score: 308.5 bits (789), Expect = 1.3e-80
Identity = 157/162 (96.91%), Postives = 160/162 (98.77%), Query Frame = 0


Query: 1   MRTFQLKSSDNKIFKVSEEIAIQSAVIKSFLEDFGSDSDEIVIPLPNVSGRILEIVIEWI 60
           MRTFQLKSSDNKIFKVSEEIAIQSAVIKSFLEDFGSDSDEIVIPLPNVSGRILEIVIEWI
Sbjct: 1   MRTFQLKSSDNKIFKVSEEIAIQSAVIKSFLEDFGSDSDEIVIPLPNVSGRILEIVIEWI 60

Query: 61  VKHANDELTKEEVQDWENKFMNDLNMEVTTELVMAANYLEVIGLLHRTCQSIANQISGKS 120
           VKHA+DELTKEEVQDWENKFMNDLNMEVTTELVMAANYLEVIGLLHRTCQSIA+QISGKS
Sbjct: 61  VKHADDELTKEEVQDWENKFMNDLNMEVTTELVMAANYLEVIGLLHRTCQSIADQISGKS 120

Query: 121 PEEIRRILNITNDFTPEEEAEIREQNGWDPNPSTTDDGIFPI 163
           PEEIRRILNITNDFTPEEEAEIREQNGWD NPSTTDD +FPI
Sbjct: 121 PEEIRRILNITNDFTPEEEAEIREQNGWDLNPSTTDDEMFPI 162

[Close]

BLAST of Carg01943 vs. NCBI nr
Match: XP_023549855.1 (S-phase kinase-associated protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 308.5 bits (789), Expect = 1.3e-80
Identity = 157/162 (96.91%), Postives = 160/162 (98.77%), Query Frame = 0


Query: 1   MRTFQLKSSDNKIFKVSEEIAIQSAVIKSFLEDFGSDSDEIVIPLPNVSGRILEIVIEWI 60
           MRTFQLKSSDNKIFKVSEEIAIQSAVIKSFLEDFGSDSDEIVIPLPNVSGRILEIVIEWI
Sbjct: 1   MRTFQLKSSDNKIFKVSEEIAIQSAVIKSFLEDFGSDSDEIVIPLPNVSGRILEIVIEWI 60

Query: 61  VKHANDELTKEEVQDWENKFMNDLNMEVTTELVMAANYLEVIGLLHRTCQSIANQISGKS 120
           VKHA+DELTKEEVQDWENKFMNDLNMEVTTELVMAANYLEVIGLLHRTCQSIA+QISGKS
Sbjct: 61  VKHADDELTKEEVQDWENKFMNDLNMEVTTELVMAANYLEVIGLLHRTCQSIADQISGKS 120

Query: 121 PEEIRRILNITNDFTPEEEAEIREQNGWDPNPSTTDDGIFPI 163
           PEEIRRILNITNDFTPEEEAEIREQNGWD NPSTTDDG+F I
Sbjct: 121 PEEIRRILNITNDFTPEEEAEIREQNGWDLNPSTTDDGLFRI 162

[Close]

BLAST of Carg01943 vs. NCBI nr
Match: XP_022989752.1 (S-phase kinase-associated protein 1-like [Cucurbita maxima])

HSP 1 Score: 275.4 bits (703), Expect = 1.2e-70
Identity = 139/154 (90.26%), Postives = 148/154 (96.10%), Query Frame = 0


Query: 1   MRTFQLKSSDNKIFKVSEEIAIQSAVIKSFLEDFGSDSDEIVIPLPNVSGRILEIVIEWI 60
           MRTFQLKSSDNKIFKVSEEIAIQSAVIK+FLEDFGSDSDEIVIPLPNV GRILE++IEW+
Sbjct: 1   MRTFQLKSSDNKIFKVSEEIAIQSAVIKNFLEDFGSDSDEIVIPLPNVRGRILEMMIEWM 60

Query: 61  VKHANDELTKEEVQDWENKFMNDLNMEVTTELVMAANYLEVIGLLHRTCQSIANQISGKS 120
           VKH ++ELTKEEV+DWENKFMNDLNMEVTTELVMAANYLEVIGLLHRTCQSIA+ ISGKS
Sbjct: 61  VKHVDEELTKEEVEDWENKFMNDLNMEVTTELVMAANYLEVIGLLHRTCQSIADHISGKS 120

Query: 121 PEEIRRILNITNDFTPEEEAEIREQNGWDPNPST 155
           PEEIRRILNIT+DFTPEEEAEIR QNGW  NPST
Sbjct: 121 PEEIRRILNITSDFTPEEEAEIRRQNGWVLNPST 154

[Close]

BLAST of Carg01943 vs. NCBI nr
Match: XP_008446842.1 (PREDICTED: SKP1-like protein 12 [Cucumis melo])

HSP 1 Score: 196.8 bits (499), Expect = 5.6e-47
Identity = 94/153 (61.44%), Postives = 122/153 (79.74%), Query Frame = 0


Query: 1   MRTFQLKSSDNKIFKVSEEIAIQSAVIKSFLEDFGSDSDEIVIPLPNVSGRILEIVIEWI 60
           MRT  L+SS+N+IFKVSEE+A QS V+++FLE+  S+ DEI IPLPN+SG++L +VIEWI
Sbjct: 1   MRTVNLRSSENEIFKVSEEVAKQSVVVRNFLEEDNSNGDEITIPLPNISGKLLGMVIEWI 60

Query: 61  VKHANDELTKEEVQDWENKFMNDLNMEVTTELVMAANYLEVIGLLHRTCQSIANQISGKS 120
             H  ++L +E++  W+ KFM DL++++  EL+MAANYLEV  L H TCQ +A++ISGKS
Sbjct: 61  AMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120

Query: 121 PEEIRRILNITNDFTPEEEAEIREQNGWDPNPS 154
           PEEIR+I NITNDFTPEEEAEIR QN W   PS
Sbjct: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPS 153

[Close]

BLAST of Carg01943 vs. NCBI nr
Match: XP_004142439.1 (PREDICTED: SKP1-like protein 14 [Cucumis sativus] >KGN52248.1 hypothetical protein Csa_5G622630 [Cucumis sativus])

HSP 1 Score: 194.5 bits (493), Expect = 2.8e-46
Identity = 95/158 (60.13%), Postives = 123/158 (77.85%), Query Frame = 0


Query: 1   MRTFQLKSSDNKIFKVSEEIAIQSAVIKSFLEDFGSDSDEIVIPLPNVSGRILEIVIEWI 60
           MR   L+SS+N+IFKVSEE+A QS V++ FLE+  S++DEI IPLPN+SGR+L +VIEWI
Sbjct: 1   MRIVNLRSSENEIFKVSEEVAKQSVVVRIFLEEDDSNNDEITIPLPNISGRLLGMVIEWI 60

Query: 61  VKHANDELTKEEVQDWENKFMNDLNMEVTTELVMAANYLEVIGLLHRTCQSIANQISGKS 120
           V H  ++L +E +  W+ KF+ DL++++  EL+MAANYLEV  L H TCQ +A++ISGKS
Sbjct: 61  VMHVEEKLAEEALHAWKTKFLEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120

Query: 121 PEEIRRILNITNDFTPEEEAEIREQNGWDPNPSTTDDG 159
           PEEIR+I NITNDFTPEEEAEIR QN W   PS +  G
Sbjct: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGSG 158

[Close]

BLAST of Carg01943 vs. TAIR10
Match: AT4G34210.1 (SKP1-like 11)

HSP 1 Score: 123.2 bits (308), Expect = 1.4e-28
Identity = 70/146 (47.95%), Postives = 93/146 (63.70%), Query Frame = 0


Query: 6   LKSSDNKIFKVSEEIAIQSAVIKSFLEDFGSDSDEIVIPLPNVSGRILEIVIEWIVKHAN 65
           L SSD + F+V E +AIQS  I   +ED   D     IPL NV  +IL  VIE+  KH  
Sbjct: 8   LMSSDGQSFEVEEAVAIQSQTIAHMVED---DCVADGIPLANVESKILVKVIEYCKKHHV 67

Query: 66  DE---LTKEEVQDWENKFMNDLNMEVTTELVMAANYLEVIGLLHRTCQSIANQISGKSPE 125
           DE   +++E++ +W+ KFM DL      EL++AANYL +  LL  TCQ++A+ I GK+PE
Sbjct: 68  DEANPISEEDLNNWDEKFM-DLEQSTIFELILAANYLNIKSLLDLTCQTVADMIKGKTPE 127

Query: 126 EIRRILNITNDFTPEEEAEIREQNGW 149
           EIR   NI NDFTPEEE  +R++N W
Sbjct: 128 EIRSTFNIENDFTPEEEEAVRKENQW 149

[Close]

BLAST of Carg01943 vs. TAIR10
Match: AT2G03170.1 (SKP1-like 14)

HSP 1 Score: 120.9 bits (302), Expect = 7.1e-28
Identity = 62/143 (43.36%), Postives = 93/143 (65.03%), Query Frame = 0


Query: 6   LKSSDNKIFKVSEEIAIQSAVIKSFLEDFGSDSDEIVIPLPNVSGRILEIVIEWIVKHAN 65
           L SSD + F+V E +A +  +++  +ED   D     +PL NV+G+IL IV+E+  KH  
Sbjct: 8   LSSSDGESFEVEEAVARKLKIVEHMIED---DCVVTEVPLQNVTGKILSIVVEYCKKHVV 67

Query: 66  DELTKEEVQDWENKFMNDLNMEVTTELVMAANYLEVIGLLHRTCQSIANQISGKSPEEIR 125
           DE   +E + W+ +FM   +     +L++AANYL + GLL  + Q++A++I  K+PEEIR
Sbjct: 68  DE-ESDEFKTWDEEFMKKFDQPTVFQLLLAANYLNIKGLLDLSAQTVADRIKDKTPEEIR 127

Query: 126 RILNITNDFTPEEEAEIREQNGW 149
            I NI NDFTPEEEA +R++N W
Sbjct: 128 EIFNIENDFTPEEEAAVRKENAW 146

[Close]

BLAST of Carg01943 vs. TAIR10
Match: AT1G20140.1 (SKP1-like 4)

HSP 1 Score: 119.0 bits (297), Expect = 2.7e-27
Identity = 63/155 (40.65%), Postives = 99/155 (63.87%), Query Frame = 0


Query: 6   LKSSDNKIFKVSEEIAIQSAVIKSFLEDFGSDSDEIVIPLPNVSGRILEIVIEWIVKHAN 65
           LKSSD + F++ E +A++S  IK  +ED  +D+    IPLPNV+G IL  VIE+  KH  
Sbjct: 10  LKSSDGESFEIEEAVAVKSQTIKHMIEDDCADNG---IPLPNVTGAILAKVIEYCKKHVE 69

Query: 66  ------------DELTKEEVQDWENKFMNDLNMEVTTELVMAANYLEVIGLLHRTCQSIA 125
                            +E+++W+++F+  ++     +L++AANYL + GLL  TC+++A
Sbjct: 70  AAAEAGGDKDFYGSAENDELKNWDSEFVK-VDQPTLFDLILAANYLNIGGLLDLTCKAVA 129

Query: 126 NQISGKSPEEIRRILNITNDFTPEEEAEIREQNGW 149
           +Q+ GK+PE++R   NI ND+TPEEEAE+R +N W
Sbjct: 130 DQMRGKTPEQMRAHFNIKNDYTPEEEAEVRNENKW 160

[Close]

BLAST of Carg01943 vs. TAIR10
Match: AT4G34470.1 (SKP1-like 12)

HSP 1 Score: 118.6 bits (296), Expect = 3.5e-27
Identity = 68/146 (46.58%), Postives = 91/146 (62.33%), Query Frame = 0


Query: 6   LKSSDNKIFKVSEEIAIQSAVIKSFLEDFGSDSDEIVIPLPNVSGRILEIVIEWIVKHAN 65
           L SSD + F+V E +AIQS  I   +ED   D     IPL NV  +IL  VIE+  K+  
Sbjct: 8   LMSSDGQSFEVEEAVAIQSQTIAHMVED---DCVADGIPLANVESKILVKVIEYCKKYHV 67

Query: 66  DE---LTKEEVQDWENKFMNDLNMEVTTELVMAANYLEVIGLLHRTCQSIANQISGKSPE 125
           DE   +++E++  W+ KFM DL      EL++AANYL +  L   TCQ++A+ I GK+PE
Sbjct: 68  DEANPISEEDLNKWDEKFM-DLEQSTIFELILAANYLNIKSLFDLTCQTVADMIKGKTPE 127

Query: 126 EIRRILNITNDFTPEEEAEIREQNGW 149
           EIR   NI NDFTPEEE  +R++N W
Sbjct: 128 EIRSTFNIENDFTPEEEEAVRKENQW 149

[Close]

BLAST of Carg01943 vs. TAIR10
Match: AT5G42190.1 (E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein)

HSP 1 Score: 115.5 bits (288), Expect = 3.0e-26
Identity = 64/169 (37.87%), Postives = 98/169 (57.99%), Query Frame = 0


Query: 1   MRTFQLKSSDNKIFKVSEEIAIQSAVIKSFLEDFGSDSDEIVIPLPNVSGRILEIVIEWI 60
           +R   LKSSD + F++ E +A++S  IK  +ED  +D+    IPLPNV+ +IL  VIE+ 
Sbjct: 4   VRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNG---IPLPNVTSKILSKVIEYC 63

Query: 61  VKHAN---------------------DELTKEEVQDWENKFMNDLNMEVTTELVMAANYL 120
            +H                             +++ W+++F+  ++     +L++AANYL
Sbjct: 64  KRHVEAAEXXXXXXXXXXXXXXXXXXXXXXXXDLKTWDSEFIK-VDQGTLFDLILAANYL 123

Query: 121 EVIGLLHRTCQSIANQISGKSPEEIRRILNITNDFTPEEEAEIREQNGW 149
            + GLL  TCQ++A+ I GK+PEEIR+  NI NDFTPEEE E+R +N W
Sbjct: 124 NIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQW 168

[Close]

BLAST of Carg01943 vs. Swiss-Prot
Match: sp|Q9Y709|SKP1_SCHPO (Suppressor of kinetochore protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=skp1 PE=1 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 5.2e-28
Identity = 72/160 (45.00%), Postives = 102/160 (63.75%), Query Frame = 0


Query: 1   MRTFQLKSSDNKIFKVSEEIAIQSAVIKSFLEDFGSDSDEIVIPLPNVSGRILEIVIEWI 60
           M   +L SSDN+ F V + IA +S +IK+ LED G  +  + IPLPNVS  +L  V+EW 
Sbjct: 1   MSKIKLISSDNEEFVVDQLIAERSMLIKNMLEDVGEIN--VPIPLPNVSSNVLRKVLEWC 60

Query: 61  VKHAND--ELTKEE----------VQDWENKFMNDLNMEVTTELVMAANYLEVIGLLHRT 120
             H ND    T+EE          + +W+ KFM  ++ E+  E+V+A+NYL++  LL   
Sbjct: 61  EHHKNDLYSGTEEESDIRLKKSTDIDEWDRKFM-AVDQEMLFEIVLASNYLDIKPLLDTG 120

Query: 121 CQSIANQISGKSPEEIRRILNITNDFTPEEEAEIREQNGW 149
           C+++AN I GKSPE+IR+  NI NDFTPEEE +IR++N W
Sbjct: 121 CKTVANMIRGKSPEDIRKTFNIPNDFTPEEEEQIRKENEW 157

[Close]

BLAST of Carg01943 vs. Swiss-Prot
Match: sp|Q9WTX5|SKP1_MOUSE (S-phase kinase-associated protein 1 OS=Mus musculus OX=10090 GN=Skp1 PE=1 SV=3)

HSP 1 Score: 124.8 bits (312), Expect = 8.8e-28
Identity = 69/160 (43.12%), Postives = 99/160 (61.88%), Query Frame = 0


Query: 1   MRTFQLKSSDNKIFKVSEEIAIQSAVIKSFLEDFGSD--SDEIVIPLPNVSGRILEIVIE 60
           M T +L+SSD +IF+V  EIA QS  IK+ LED G D   D+  +PLPNV+  IL+ VI+
Sbjct: 1   MPTIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQ 60

Query: 61  W----------IVKHANDELTKEEVQDWENKFMNDLNMEVTTELVMAANYLEVIGLLHRT 120
           W                      ++  W+ +F+  ++     EL++AANYL++ GLL  T
Sbjct: 61  WCXXXXXXXXXXXXXXXXXXXXXDIPVWDQEFLK-VDQGTLFELILAANYLDIKGLLDVT 120

Query: 121 CQSIANQISGKSPEEIRRILNITNDFTPEEEAEIREQNGW 149
           C+++AN I GK+PEEIR+  NI NDFT EEEA++R++N W
Sbjct: 121 CKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQW 159

[Close]

BLAST of Carg01943 vs. Swiss-Prot
Match: sp|Q6PEC4|SKP1_RAT (S-phase kinase-associated protein 1 OS=Rattus norvegicus OX=10116 GN=Skp1 PE=1 SV=3)

HSP 1 Score: 124.8 bits (312), Expect = 8.8e-28
Identity = 69/160 (43.12%), Postives = 99/160 (61.88%), Query Frame = 0


Query: 1   MRTFQLKSSDNKIFKVSEEIAIQSAVIKSFLEDFGSD--SDEIVIPLPNVSGRILEIVIE 60
           M T +L+SSD +IF+V  EIA QS  IK+ LED G D   D+  +PLPNV+  IL+ VI+
Sbjct: 1   MPTIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQ 60

Query: 61  W----------IVKHANDELTKEEVQDWENKFMNDLNMEVTTELVMAANYLEVIGLLHRT 120
           W                      ++  W+ +F+  ++     EL++AANYL++ GLL  T
Sbjct: 61  WCXXXXXXXXXXXXXXXXXXXXXDIPVWDQEFLK-VDQGTLFELILAANYLDIKGLLDVT 120

Query: 121 CQSIANQISGKSPEEIRRILNITNDFTPEEEAEIREQNGW 149
           C+++AN I GK+PEEIR+  NI NDFT EEEA++R++N W
Sbjct: 121 CKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQW 159

[Close]

BLAST of Carg01943 vs. Swiss-Prot
Match: sp|B8MDP8|SKP1_TALSN (E3 ubiquitin ligase complex SCF subunit sconC OS=Talaromyces stipitatus (strain ATCC 10500 / CBS 375.48 / QM 6759 / NRRL 1006) OX=441959 GN=sconC PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.2e-27
Identity = 66/153 (43.14%), Postives = 94/153 (61.44%), Query Frame = 0


Query: 6   LKSSDNKIFKVSEEIAIQSAVIKSFLEDFGSDSDEIVIPLPNVSGRILEIVIEWIVKHAN 65
           L+SSD     V   +A +S +IK+ LED G   +   +P+PNV+  +L+ VIEW   H N
Sbjct: 7   LQSSDQVNITVERAVAERSMLIKNLLEDLGESEEP--VPIPNVNESVLKKVIEWCTHHKN 66

Query: 66  DELT----------KEEVQDWENKFMNDLNMEVTTELVMAANYLEVIGLLHRTCQSIANQ 125
           D  T            E+ +W+ KFM  ++ E+  E+++AANYL++  LL   C+++AN 
Sbjct: 67  DPQTXXXXXXXXXXXTEIDEWDQKFM-QVDQEMLFEIILAANYLDIKALLDVGCKTVANM 126

Query: 126 ISGKSPEEIRRILNITNDFTPEEEAEIREQNGW 149
           I GKSPEEIR+  NI NDFTPEEE +IR +N W
Sbjct: 127 IKGKSPEEIRKTFNIQNDFTPEEEDQIRRENEW 156

[Close]

BLAST of Carg01943 vs. Swiss-Prot
Match: sp|B6QGB9|SKP1_TALMQ (E3 ubiquitin ligase complex SCF subunit sconC OS=Talaromyces marneffei (strain ATCC 18224 / CBS 334.59 / QM 7333) OX=441960 GN=sconC PE=3 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 2.0e-27
Identity = 67/153 (43.79%), Postives = 97/153 (63.40%), Query Frame = 0


Query: 6   LKSSDNKIFKVSEEIAIQSAVIKSFLEDFGSDSDEIVIPLPNVSGRILEIVIEWIVKHAN 65
           L+SSD+    V   +A +S +IK+ LED G   +   +P+PNV+  +L+ VIEW   H N
Sbjct: 7   LQSSDSVDITVERAVAERSMLIKNLLEDLGESEEP--VPIPNVNESVLKKVIEWCTHHKN 66

Query: 66  D-ELTKE---------EVQDWENKFMNDLNMEVTTELVMAANYLEVIGLLHRTCQSIANQ 125
           D + T E         E+ +W+ KFM  ++ E+  E+++AANYL++  LL   C+++AN 
Sbjct: 67  DPQSTGEXXXXXXXTTEIDEWDQKFM-QVDQEMLFEIILAANYLDIKALLDVGCKTVANM 126

Query: 126 ISGKSPEEIRRILNITNDFTPEEEAEIREQNGW 149
           I GKSPEEIR+  NI NDFTPEEE +IR +N W
Sbjct: 127 IKGKSPEEIRKTFNIQNDFTPEEEDQIRRENEW 156

[Close]

BLAST of Carg01943 vs. TrEMBL
Match: tr|A0A1S3BGP6|A0A1S3BGP6_CUCME (SKP1-like protein 12 OS=Cucumis melo OX=3656 GN=LOC103489446 PE=3 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 3.7e-47
Identity = 94/153 (61.44%), Postives = 122/153 (79.74%), Query Frame = 0


Query: 1   MRTFQLKSSDNKIFKVSEEIAIQSAVIKSFLEDFGSDSDEIVIPLPNVSGRILEIVIEWI 60
           MRT  L+SS+N+IFKVSEE+A QS V+++FLE+  S+ DEI IPLPN+SG++L +VIEWI
Sbjct: 1   MRTVNLRSSENEIFKVSEEVAKQSVVVRNFLEEDNSNGDEITIPLPNISGKLLGMVIEWI 60

Query: 61  VKHANDELTKEEVQDWENKFMNDLNMEVTTELVMAANYLEVIGLLHRTCQSIANQISGKS 120
             H  ++L +E++  W+ KFM DL++++  EL+MAANYLEV  L H TCQ +A++ISGKS
Sbjct: 61  AMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120

Query: 121 PEEIRRILNITNDFTPEEEAEIREQNGWDPNPS 154
           PEEIR+I NITNDFTPEEEAEIR QN W   PS
Sbjct: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPS 153

[Close]

BLAST of Carg01943 vs. TrEMBL
Match: tr|A0A0A0KRJ8|A0A0A0KRJ8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G622630 PE=3 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 1.8e-46
Identity = 95/158 (60.13%), Postives = 123/158 (77.85%), Query Frame = 0


Query: 1   MRTFQLKSSDNKIFKVSEEIAIQSAVIKSFLEDFGSDSDEIVIPLPNVSGRILEIVIEWI 60
           MR   L+SS+N+IFKVSEE+A QS V++ FLE+  S++DEI IPLPN+SGR+L +VIEWI
Sbjct: 1   MRIVNLRSSENEIFKVSEEVAKQSVVVRIFLEEDDSNNDEITIPLPNISGRLLGMVIEWI 60

Query: 61  VKHANDELTKEEVQDWENKFMNDLNMEVTTELVMAANYLEVIGLLHRTCQSIANQISGKS 120
           V H  ++L +E +  W+ KF+ DL++++  EL+MAANYLEV  L H TCQ +A++ISGKS
Sbjct: 61  VMHVEEKLAEEALHAWKTKFLEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120

Query: 121 PEEIRRILNITNDFTPEEEAEIREQNGWDPNPSTTDDG 159
           PEEIR+I NITNDFTPEEEAEIR QN W   PS +  G
Sbjct: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGSG 158

[Close]

BLAST of Carg01943 vs. TrEMBL
Match: tr|A0A068RIN1|A0A068RIN1_9FUNG (S-phase kinase-associated protein 1a-likeprotein OS=Lichtheimia corymbifera JMRC:FSU:9682 OX=1263082 GN=LCOR_01731.1 PE=3 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.2e-29
Identity = 77/156 (49.36%), Postives = 106/156 (67.95%), Query Frame = 0


Query: 1   MRTFQLKSSDNKIFKVSEEIAIQSAVIKSFLEDFGSDSDEIVIPLPNVSGRILEIVIEWI 60
           M T +L SSDN+ F V +E+A +S +IK+ LED G DSD   IPLPNV+ +IL  VIEW 
Sbjct: 1   MATVKLISSDNEDFTVDKEVAEKSVLIKNMLEDVG-DSD-APIPLPNVTAKILRKVIEWC 60

Query: 61  VKHANDELTKEEVQD--------WENKFMNDLNMEVTTELVMAANYLEVIGLLHRTCQSI 120
             H ND +  ++ QD        W+ K+M +++ E   ++++AANYL++  LL   C+++
Sbjct: 61  DHHRNDPIVAQDEQDRRNTDIEEWDQKYM-EVDQETLFDVILAANYLDIKPLLDVGCKTV 120

Query: 121 ANQISGKSPEEIRRILNITNDFTPEEEAEIREQNGW 149
           AN I GKS EEIRR  NITNDFTPEEEA+IR++N W
Sbjct: 121 ANMIKGKSAEEIRRTFNITNDFTPEEEAQIRKENEW 153

[Close]

BLAST of Carg01943 vs. TrEMBL
Match: tr|A0A2P5EWQ5|A0A2P5EWQ5_9ROSA (S-phase kinase-associated protein OS=Trema orientalis OX=63057 GN=TorRG33x02_142540 PE=3 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.2e-29
Identity = 71/150 (47.33%), Postives = 104/150 (69.33%), Query Frame = 0


Query: 6   LKSSDNKIFKVSEEIAIQSAVIKSFLEDFGSDSDEIVIPLPNVSGRILEIVIEWIVKH-- 65
           LKSSD+++F+V E +A++S  IK  +ED  +D+ E V+P+PNV+  IL  VIE+  KH  
Sbjct: 10  LKSSDDELFEVDEVVALESETIKFLIEDKCADNPETVVPIPNVTSDILAKVIEYCKKHVE 69

Query: 66  -----ANDELTKEEVQDWENKFMNDLNMEVTTELVMAANYLEVIGLLHRTCQSIANQISG 125
                A+   T++ ++DW+ +F+  ++     +L++AANYL +  LL  TCQ +A+ I G
Sbjct: 70  ASAGGADKSATEKSLKDWDAEFVK-VDQATLFDLILAANYLNIKNLLDLTCQCVADMIKG 129

Query: 126 KSPEEIRRILNITNDFTPEEEAEIREQNGW 149
           KSPEEIRR  NITNDFTPEEEAE+R++N W
Sbjct: 130 KSPEEIRRTFNITNDFTPEEEAEVRKENQW 158

[Close]

BLAST of Carg01943 vs. TrEMBL
Match: tr|A0A077WBB0|A0A077WBB0_9FUNG (Putative E3 ubiquitin ligase complex SCFFT subunit sconC OS=Lichtheimia ramosa OX=688394 GN=LRAMOSA07255 PE=3 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.6e-29
Identity = 77/156 (49.36%), Postives = 106/156 (67.95%), Query Frame = 0


Query: 1   MRTFQLKSSDNKIFKVSEEIAIQSAVIKSFLEDFGSDSDEIVIPLPNVSGRILEIVIEWI 60
           M T +L SSDN+ F V +E+A +S +IK+ LED G DSD   IPLPNV+ +IL  VIEW 
Sbjct: 1   MSTVKLISSDNEDFTVDKEVAEKSVLIKNMLEDVG-DSD-APIPLPNVTAKILRKVIEWC 60

Query: 61  VKHANDELTKEEVQD--------WENKFMNDLNMEVTTELVMAANYLEVIGLLHRTCQSI 120
             H ND +  ++ QD        W+ K+M +++ E   ++++AANYL++  LL   C+++
Sbjct: 61  DHHRNDPVVAQDEQDRRNTDIEEWDQKYM-EVDQETLFDVILAANYLDIKPLLDVGCKTV 120

Query: 121 ANQISGKSPEEIRRILNITNDFTPEEEAEIREQNGW 149
           AN I GKS EEIRR  NITNDFTPEEEA+IR++N W
Sbjct: 121 ANMIKGKSAEEIRRTFNITNDFTPEEEAQIRKENEW 153

The following BLAST results are available for this feature:

BLAST of Carg01943 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022956819.1	1.3e-80	96.91	S-phase kinase-associated protein 1-like [Cucurbita moschata]	[more]
XP_023549855.1	1.3e-80	96.91	S-phase kinase-associated protein 1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022989752.1	1.2e-70	90.26	S-phase kinase-associated protein 1-like [Cucurbita maxima]	[more]
XP_008446842.1	5.6e-47	61.44	PREDICTED: SKP1-like protein 12 [Cucumis melo]	[more]
XP_004142439.1	2.8e-46	60.13	PREDICTED: SKP1-like protein 14 [Cucumis sativus] >KGN52248.1 hypothetical prote...	[more]

BLAST of Carg01943 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G34210.1	1.4e-28	47.95	SKP1-like 11	[more]
AT2G03170.1	7.1e-28	43.36	SKP1-like 14	[more]
AT1G20140.1	2.7e-27	40.65	SKP1-like 4	[more]
AT4G34470.1	3.5e-27	46.58	SKP1-like 12	[more]
AT5G42190.1	3.0e-26	37.87	E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein	[more]

BLAST of Carg01943 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9Y709\|SKP1_SCHPO	5.2e-28	45.00	Suppressor of kinetochore protein 1 OS=Schizosaccharomyces pombe (strain 972 / A...	[more]
sp\|Q9WTX5\|SKP1_MOUSE	8.8e-28	43.13	S-phase kinase-associated protein 1 OS=Mus musculus OX=10090 GN=Skp1 PE=1 SV=3	[more]
sp\|Q6PEC4\|SKP1_RAT	8.8e-28	43.13	S-phase kinase-associated protein 1 OS=Rattus norvegicus OX=10116 GN=Skp1 PE=1 S...	[more]
sp\|B8MDP8\|SKP1_TALSN	1.2e-27	43.14	E3 ubiquitin ligase complex SCF subunit sconC OS=Talaromyces stipitatus (strain ...	[more]
sp\|B6QGB9\|SKP1_TALMQ	2.0e-27	43.79	E3 ubiquitin ligase complex SCF subunit sconC OS=Talaromyces marneffei (strain A...	[more]

BLAST of Carg01943 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BGP6\|A0A1S3BGP6_CUCME	3.7e-47	61.44	SKP1-like protein 12 OS=Cucumis melo OX=3656 GN=LOC103489446 PE=3 SV=1	[more]
tr\|A0A0A0KRJ8\|A0A0A0KRJ8_CUCSA	1.8e-46	60.13	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G622630 PE=3 SV=1	[more]
tr\|A0A068RIN1\|A0A068RIN1_9FUNG	1.2e-29	49.36	S-phase kinase-associated protein 1a-likeprotein OS=Lichtheimia corymbifera JMRC...	[more]
tr\|A0A2P5EWQ5\|A0A2P5EWQ5_9ROSA	1.2e-29	47.33	S-phase kinase-associated protein OS=Trema orientalis OX=63057 GN=TorRG33x02_142...	[more]
tr\|A0A077WBB0\|A0A077WBB0_9FUNG	1.6e-29	49.36	Putative E3 ubiquitin ligase complex SCFFT subunit sconC OS=Lichtheimia ramosa O...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006511	ubiquitin-dependent protein catabolic process

Vocabulary: **INTERPRO**
Term	Definition
IPR011333	SKP1/BTB/POZ_sf
IPR036296	SKP1-like_dim_sf
IPR016073	Skp1_comp_POZ
IPR016897	SKP1
IPR016072	Skp1_comp_dimer
IPR001232	SKP1-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg01943-RA	Carg01943-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001232	S-phase kinase-associated protein 1-like	SMART	SM00512	skp1_3	coord: 1..101 e-value: 9.3E-31 score: 118.2
IPR016072	SKP1 component, dimerisation	PFAM	PF01466	Skp1	coord: 103..148 e-value: 6.8E-22 score: 77.2
None	No IPR available	GENE3D	G3DSA:3.30.710.10		coord: 1..151 e-value: 6.9E-52 score: 177.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 142..162
None	No IPR available	PANTHER	PTHR11165	SKP1	coord: 4..148
None	No IPR available	PANTHER	PTHR11165:SF86	SKP1-LIKE PROTEIN 10-RELATED	coord: 4..148
IPR016897	S-phase kinase-associated protein 1	PIRSF	PIRSF028729	SCF_Skp	coord: 1..152 e-value: 1.1E-49 score: 166.3
IPR016073	SKP1 component, POZ domain	PFAM	PF03931	Skp1_POZ	coord: 4..64 e-value: 4.7E-19 score: 68.2
IPR036296	SKP1-like, dimerisation domain superfamily	SUPERFAMILY	SSF81382	Skp1 dimerisation domain-like	coord: 74..148
IPR011333	SKP1/BTB/POZ domain superfamily	SUPERFAMILY	SSF54695	POZ domain	coord: 3..67

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg01943	Cla020544	Watermelon (97103) v1	carwmB0842
Carg01943	Csa5G622630	Cucumber (Chinese Long) v2	carcuB0857
Carg01943	MELO3C012407	Melon (DHL92) v3.5.1	carmeB0834
Carg01943	ClCG05G021200	Watermelon (Charleston Gray)	carwcgB0816
Carg01943	CSPI05G26930	Wild cucumber (PI 183967)	carcpiB0877
Carg01943	Cucsa.308560	Cucumber (Gy14) v1	carcgyB0969
Carg01943	CmaCh04G013820	Cucurbita maxima (Rimu)	carcmaB1170
Carg01943	CmoCh04G014530	Cucurbita moschata (Rifu)	carcmoB1138
Carg01943	Lsi04G000870	Bottle gourd (USVL1VR-Ls)	carlsiB767
Carg01943	Cp4.1LG01g14620	Cucurbita pepo (Zucchini)	carcpeB1177
Carg01943	CsGy5G026380	Cucumber (Gy14) v2	carcgybB0831
Carg01943	MELO3C012407.2	Melon (DHL92) v3.6.1	carmedB0846
Carg01943	CsaV3_5G036070	Cucumber (Chinese Long) v3	carcucB0881
Carg01943	Cla97C05G102870	Watermelon (97103) v2	carwmbB0878
Carg01943	Bhi07G000716	Wax gourd	carwgoB0979

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg01943	Silver-seed gourd	carcarB309
Carg01943	Silver-seed gourd	carcarB472
Carg01943	Silver-seed gourd	carcarB578
Carg01943	Cucurbita maxima (Rimu)	carcmaB1168
Carg01943	Cucurbita maxima (Rimu)	carcmaB1163
Carg01943	Cucurbita maxima (Rimu)	carcmaB1167
Carg01943	Cucurbita moschata (Rifu)	carcmoB1131
Carg01943	Cucurbita moschata (Rifu)	carcmoB1135
Carg01943	Cucurbita moschata (Rifu)	carcmoB1136
Carg01943	Cucurbita pepo (Zucchini)	carcpeB1169
Carg01943	Cucurbita pepo (Zucchini)	carcpeB1174
Carg01943	Cucurbita pepo (Zucchini)	carcpeB1176
Carg01943	Bottle gourd (USVL1VR-Ls)	carlsiB769
Carg01943	Melon (DHL92) v3.5.1	carmeB0836
Carg01943	Melon (DHL92) v3.6.1	carmedB0848
Carg01943	Watermelon (Charleston Gray)	carwcgB0819
Carg01943	Watermelon (97103) v1	carwmB0838
Carg01943	Watermelon (97103) v2	carwmbB0881
Carg01943	Wax gourd	carwgoB0977