Cp4.1LG01g14620 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g14620
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	SCF ubiquitin ligase, SKP1 component
Location	Cp4.1LG01 : 7483339 .. 7483827 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAACTTTTCAACTAAAATCATCGGACAACAAAATTTTCAAGGTAAGCGAGGAGATCGCGATACAATCCGCAGTGATTAAGAGCTTTCTTGAAGATTTCGGATCTGATAGCGACGAAATTGTGATTCCGCTGCCAAATGTTAGCGGAAGAATATTAGAGATAGTGATCGAGTGGATCGTGAAGCACGCGGATGATGAACTGACGAAAGAAGAAGTCCAAGATTGGGAGAATAAGTTTATGAATGATCTAAATATGGAAGTGACGACGGAGCTTGTAATGGCGGCCAATTACCTCGAAGTCATCGGATTGCTCCATCGAACTTGCCAGAGCATCGCCGATCAAATTTCCGGCAAGAGTCCGGAGGAGATTCGGAGGATACTTAACATTACCAATGATTTTACGCCGGAAGAAGAGGCGGAGATCCGAGAACAGAATGGTTGGGATCTCAATCCATCAACAACGGACGACGGGCTGTTTCGGATTTAA

mRNA sequence

ATGAGAACTTTTCAACTAAAATCATCGGACAACAAAATTTTCAAGGTAAGCGAGGAGATCGCGATACAATCCGCAGTGATTAAGAGCTTTCTTGAAGATTTCGGATCTGATAGCGACGAAATTGTGATTCCGCTGCCAAATGTTAGCGGAAGAATATTAGAGATAGTGATCGAGTGGATCGTGAAGCACGCGGATGATGAACTGACGAAAGAAGAAGTCCAAGATTGGGAGAATAAGTTTATGAATGATCTAAATATGGAAGTGACGACGGAGCTTGTAATGGCGGCCAATTACCTCGAAGTCATCGGATTGCTCCATCGAACTTGCCAGAGCATCGCCGATCAAATTTCCGGCAAGAGTCCGGAGGAGATTCGGAGGATACTTAACATTACCAATGATTTTACGCCGGAAGAAGAGGCGGAGATCCGAGAACAGAATGGTTGGGATCTCAATCCATCAACAACGGACGACGGGCTGTTTCGGATTTAA

Coding sequence (CDS)

ATGAGAACTTTTCAACTAAAATCATCGGACAACAAAATTTTCAAGGTAAGCGAGGAGATCGCGATACAATCCGCAGTGATTAAGAGCTTTCTTGAAGATTTCGGATCTGATAGCGACGAAATTGTGATTCCGCTGCCAAATGTTAGCGGAAGAATATTAGAGATAGTGATCGAGTGGATCGTGAAGCACGCGGATGATGAACTGACGAAAGAAGAAGTCCAAGATTGGGAGAATAAGTTTATGAATGATCTAAATATGGAAGTGACGACGGAGCTTGTAATGGCGGCCAATTACCTCGAAGTCATCGGATTGCTCCATCGAACTTGCCAGAGCATCGCCGATCAAATTTCCGGCAAGAGTCCGGAGGAGATTCGGAGGATACTTAACATTACCAATGATTTTACGCCGGAAGAAGAGGCGGAGATCCGAGAACAGAATGGTTGGGATCTCAATCCATCAACAACGGACGACGGGCTGTTTCGGATTTAA

Protein sequence

MRTFQLKSSDNKIFKVSEEIAIQSAVIKSFLEDFGSDSDEIVIPLPNVSGRILEIVIEWIVKHADDELTKEEVQDWENKFMNDLNMEVTTELVMAANYLEVIGLLHRTCQSIADQISGKSPEEIRRILNITNDFTPEEEAEIREQNGWDLNPSTTDDGLFRI

Homology

[Close]

BLAST of Cp4.1LG01g14620 vs. Swiss-Prot
Match: SKP1_RAT (S-phase kinase-associated protein 1 OS=Rattus norvegicus GN=Skp1 PE=1 SV=3)

HSP 1 Score: 135.6 bits (340), Expect = 4.9e-31
Identity = 72/160 (45.00%), Postives = 104/160 (65.00%), Query Frame = 1


Query: 1   MRTFQLKSSDNKIFKVSEEIAIQSAVIKSFLEDFGSDS--DEIVIPLPNVSGRILEIVIE 60
           M T +L+SSD +IF+V  EIA QS  IK+ LED G D   D+  +PLPNV+  IL+ VI+
Sbjct: 1   MPTIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQ 60

Query: 61  WIVKHADD----------ELTKEEVQDWENKFMNDLNMEVTTELVMAANYLEVIGLLHRT 120
           W   H DD          E   +++  W+ +F+  ++     EL++AANYL++ GLL  T
Sbjct: 61  WCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLK-VDQGTLFELILAANYLDIKGLLDVT 120

Query: 121 CQSIADQISGKSPEEIRRILNITNDFTPEEEAEIREQNGW 149
           C+++A+ I GK+PEEIR+  NI NDFT EEEA++R++N W
Sbjct: 121 CKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQW 159

[Close]

BLAST of Cp4.1LG01g14620 vs. Swiss-Prot
Match: SKP1_MOUSE (S-phase kinase-associated protein 1 OS=Mus musculus GN=Skp1 PE=1 SV=3)

HSP 1 Score: 135.6 bits (340), Expect = 4.9e-31
Identity = 72/160 (45.00%), Postives = 104/160 (65.00%), Query Frame = 1


Query: 1   MRTFQLKSSDNKIFKVSEEIAIQSAVIKSFLEDFGSDS--DEIVIPLPNVSGRILEIVIE 60
           M T +L+SSD +IF+V  EIA QS  IK+ LED G D   D+  +PLPNV+  IL+ VI+
Sbjct: 1   MPTIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQ 60

Query: 61  WIVKHADD----------ELTKEEVQDWENKFMNDLNMEVTTELVMAANYLEVIGLLHRT 120
           W   H DD          E   +++  W+ +F+  ++     EL++AANYL++ GLL  T
Sbjct: 61  WCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLK-VDQGTLFELILAANYLDIKGLLDVT 120

Query: 121 CQSIADQISGKSPEEIRRILNITNDFTPEEEAEIREQNGW 149
           C+++A+ I GK+PEEIR+  NI NDFT EEEA++R++N W
Sbjct: 121 CKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQW 159

[Close]

BLAST of Cp4.1LG01g14620 vs. Swiss-Prot
Match: SKP1_BOVIN (S-phase kinase-associated protein 1 OS=Bos taurus GN=SKP1 PE=2 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.4e-30
Identity = 71/160 (44.38%), Postives = 104/160 (65.00%), Query Frame = 1


Query: 1   MRTFQLKSSDNKIFKVSEEIAIQSAVIKSFLEDFGSDS--DEIVIPLPNVSGRILEIVIE 60
           M + +L+SSD +IF+V  EIA QS  IK+ LED G D   D+  +PLPNV+  IL+ VI+
Sbjct: 1   MPSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQ 60

Query: 61  WIVKHADD----------ELTKEEVQDWENKFMNDLNMEVTTELVMAANYLEVIGLLHRT 120
           W   H DD          E   +++  W+ +F+  ++     EL++AANYL++ GLL  T
Sbjct: 61  WCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLK-VDQGTLFELILAANYLDIKGLLDVT 120

Query: 121 CQSIADQISGKSPEEIRRILNITNDFTPEEEAEIREQNGW 149
           C+++A+ I GK+PEEIR+  NI NDFT EEEA++R++N W
Sbjct: 121 CKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQW 159

[Close]

BLAST of Cp4.1LG01g14620 vs. Swiss-Prot
Match: SKP1_MACFA (S-phase kinase-associated protein 1 OS=Macaca fascicularis GN=SKP1 PE=2 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.4e-30
Identity = 71/160 (44.38%), Postives = 104/160 (65.00%), Query Frame = 1


Query: 1   MRTFQLKSSDNKIFKVSEEIAIQSAVIKSFLEDFGSDS--DEIVIPLPNVSGRILEIVIE 60
           M + +L+SSD +IF+V  EIA QS  IK+ LED G D   D+  +PLPNV+  IL+ VI+
Sbjct: 1   MPSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQ 60

Query: 61  WIVKHADD----------ELTKEEVQDWENKFMNDLNMEVTTELVMAANYLEVIGLLHRT 120
           W   H DD          E   +++  W+ +F+  ++     EL++AANYL++ GLL  T
Sbjct: 61  WCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLK-VDQGTLFELILAANYLDIKGLLDVT 120

Query: 121 CQSIADQISGKSPEEIRRILNITNDFTPEEEAEIREQNGW 149
           C+++A+ I GK+PEEIR+  NI NDFT EEEA++R++N W
Sbjct: 121 CKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQW 159

[Close]

BLAST of Cp4.1LG01g14620 vs. Swiss-Prot
Match: SKP1_HUMAN (S-phase kinase-associated protein 1 OS=Homo sapiens GN=SKP1 PE=1 SV=2)

HSP 1 Score: 134.0 bits (336), Expect = 1.4e-30
Identity = 71/160 (44.38%), Postives = 104/160 (65.00%), Query Frame = 1


Query: 1   MRTFQLKSSDNKIFKVSEEIAIQSAVIKSFLEDFGSDS--DEIVIPLPNVSGRILEIVIE 60
           M + +L+SSD +IF+V  EIA QS  IK+ LED G D   D+  +PLPNV+  IL+ VI+
Sbjct: 1   MPSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQ 60

Query: 61  WIVKHADD----------ELTKEEVQDWENKFMNDLNMEVTTELVMAANYLEVIGLLHRT 120
           W   H DD          E   +++  W+ +F+  ++     EL++AANYL++ GLL  T
Sbjct: 61  WCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLK-VDQGTLFELILAANYLDIKGLLDVT 120

Query: 121 CQSIADQISGKSPEEIRRILNITNDFTPEEEAEIREQNGW 149
           C+++A+ I GK+PEEIR+  NI NDFT EEEA++R++N W
Sbjct: 121 CKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQW 159

[Close]

BLAST of Cp4.1LG01g14620 vs. TrEMBL
Match: A0A0A0KRJ8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G622630 PE=3 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 1.8e-48
Identity = 96/158 (60.76%), Postives = 124/158 (78.48%), Query Frame = 1


Query: 1   MRTFQLKSSDNKIFKVSEEIAIQSAVIKSFLEDFGSDSDEIVIPLPNVSGRILEIVIEWI 60
           MR   L+SS+N+IFKVSEE+A QS V++ FLE+  S++DEI IPLPN+SGR+L +VIEWI
Sbjct: 1   MRIVNLRSSENEIFKVSEEVAKQSVVVRIFLEEDDSNNDEITIPLPNISGRLLGMVIEWI 60

Query: 61  VKHADDELTKEEVQDWENKFMNDLNMEVTTELVMAANYLEVIGLLHRTCQSIADQISGKS 120
           V H +++L +E +  W+ KF+ DL++++  EL+MAANYLEV  L H TCQ +AD+ISGKS
Sbjct: 61  VMHVEEKLAEEALHAWKTKFLEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120

Query: 121 PEEIRRILNITNDFTPEEEAEIREQNGWDLNPSTTDDG 159
           PEEIR+I NITNDFTPEEEAEIR QN W   PS +  G
Sbjct: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGSG 158

[Close]

BLAST of Cp4.1LG01g14620 vs. TrEMBL
Match: A7S0E4_NEMVE (Predicted protein OS=Nematostella vectensis GN=v1g164893 PE=3 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 5.0e-30
Identity = 71/159 (44.65%), Postives = 105/159 (66.04%), Query Frame = 1


Query: 1   MRTFQLKSSDNKIFKVSEEIAIQSAVIKSFLEDFGSDSDEI-VIPLPNVSGRILEIVIEW 60
           M   +L+SSD +IF+V  EIA QS  IK+ LED G D D+   +PLPNV+  IL+ VI+W
Sbjct: 1   MPNIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDEDDDDAVPLPNVNAAILKKVIQW 60

Query: 61  IVKHADD----------ELTKEEVQDWENKFMNDLNMEVTTELVMAANYLEVIGLLHRTC 120
             +H DD          E   ++++ W+ +F+  ++     EL++AANYL++ GLL  TC
Sbjct: 61  ATRHKDDPPPPDDDENKEKRTDDIEPWDQEFLK-VDQGTLFELILAANYLDIKGLLDVTC 120

Query: 121 QSIADQISGKSPEEIRRILNITNDFTPEEEAEIREQNGW 149
           +++A+ I GK+PEEIR+  NI NDFTPEEE ++R++N W
Sbjct: 121 KTVANMIKGKTPEEIRKTFNIKNDFTPEEEEQVRKENEW 158

[Close]

BLAST of Cp4.1LG01g14620 vs. TrEMBL
Match: A0A0C9QLX3_9SPER (TSA: Wollemia nobilis Ref_Wollemi_Transcript_25686_867 transcribed RNA sequence OS=Wollemia nobilis PE=3 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 6.5e-30
Identity = 71/151 (47.02%), Postives = 103/151 (68.21%), Query Frame = 1


Query: 3   TFQLKSSDNKIFKVSEEIAIQSAVIKSFLEDFGSDSDEIVIPLPNVSGRILEIVIEWIVK 62
           T +LKSSD++IF+V E +A +S  IK+ +ED G D+    +PL NVSG+IL  V+E+   
Sbjct: 4   TLRLKSSDDQIFEVEEAVAFESQTIKNMIEDIGIDT---TVPLFNVSGKILARVVEYCKY 63

Query: 63  HADDE-----LTKEEVQDWENKFMNDLNMEVTTELVMAANYLEVIGLLHRTCQSIADQIS 122
           H D       L++E+++ W ++F+N ++     +L++AANYL +  LL  TCQ++AD I 
Sbjct: 64  HVDSRRDNSSLSEEDIKRWNDEFVN-VDQATLFDLILAANYLNIKSLLDLTCQTVADMIK 123

Query: 123 GKSPEEIRRILNITNDFTPEEEAEIREQNGW 149
           GK+PEEIR+  NI NDFTPEEE EIR +N W
Sbjct: 124 GKTPEEIRKTFNIKNDFTPEEEEEIRHENAW 150

[Close]

BLAST of Cp4.1LG01g14620 vs. TrEMBL
Match: I1BNR0_RHIO9 (E3 ubiquitin ligase complex SCF subunit sconC OS=Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) GN=RO3G_02544 PE=3 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.4e-29
Identity = 71/150 (47.33%), Postives = 103/150 (68.67%), Query Frame = 1


Query: 6   LKSSDNKIFKVSEEIAIQSAVIKSFLEDFGSDSDEIVIPLPNVSGRILEIVIEWIVKHAD 65
           L SSDN+ FKV +E+A +S +IK+ LED G    E  IPLPNV+ +IL  VIEW   H D
Sbjct: 5   LSSSDNEEFKVDKEVAQRSVLIKNMLEDVG--DSEAPIPLPNVTAKILGKVIEWCTHHRD 64

Query: 66  DELTKE-------EVQDWENKFMNDLNMEVTTELVMAANYLEVIGLLHRTCQSIADQISG 125
           D +T +       ++ +W+ KFM +++ E   ++++AANYL++  LL   C+++A+ I G
Sbjct: 65  DPITPDDQERRNTDIDEWDQKFM-EVDQETLFDIILAANYLDIKPLLDVGCKTVANMIKG 124

Query: 126 KSPEEIRRILNITNDFTPEEEAEIREQNGW 149
           K+ EEIRR  NITNDFTPEEEA+I+++N W
Sbjct: 125 KTAEEIRRTFNITNDFTPEEEAQIKKENEW 151

[Close]

BLAST of Cp4.1LG01g14620 vs. TrEMBL
Match: H3BAE1_LATCH (Uncharacterized protein OS=Latimeria chalumnae GN=SKP1 PE=3 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.5e-29
Identity = 73/160 (45.62%), Postives = 105/160 (65.62%), Query Frame = 1


Query: 1   MRTFQLKSSDNKIFKVSEEIAIQSAVIKSFLEDFGSD--SDEIVIPLPNVSGRILEIVIE 60
           M + +L+SSD +IF+V  EIA QS  IK+ LED G D  SDE  +PLPNV+  IL+ VI+
Sbjct: 1   MPSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDESDEDPVPLPNVNAAILKKVIQ 60

Query: 61  WIVKHADD----------ELTKEEVQDWENKFMNDLNMEVTTELVMAANYLEVIGLLHRT 120
           W   H DD          E   +++  W+ +F+  ++     EL++AANYL++ GLL  T
Sbjct: 61  WCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLK-VDQGTLFELILAANYLDIKGLLDVT 120

Query: 121 CQSIADQISGKSPEEIRRILNITNDFTPEEEAEIREQNGW 149
           C+++A+ I GK+PEEIR+  NI NDFT EEEA++R++N W
Sbjct: 121 CKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQW 159

[Close]

BLAST of Cp4.1LG01g14620 vs. TAIR10
Match: AT4G34210.1 (AT4G34210.1 SKP1-like 11)

HSP 1 Score: 125.6 bits (314), Expect = 2.9e-29
Identity = 71/146 (48.63%), Postives = 93/146 (63.70%), Query Frame = 1


Query: 6   LKSSDNKIFKVSEEIAIQSAVIKSFLEDFGSDSDEIVIPLPNVSGRILEIVIEWIVKHAD 65
           L SSD + F+V E +AIQS  I   +ED   D     IPL NV  +IL  VIE+  KH  
Sbjct: 8   LMSSDGQSFEVEEAVAIQSQTIAHMVED---DCVADGIPLANVESKILVKVIEYCKKHHV 67

Query: 66  DE---LTKEEVQDWENKFMNDLNMEVTTELVMAANYLEVIGLLHRTCQSIADQISGKSPE 125
           DE   +++E++ +W+ KFM DL      EL++AANYL +  LL  TCQ++AD I GK+PE
Sbjct: 68  DEANPISEEDLNNWDEKFM-DLEQSTIFELILAANYLNIKSLLDLTCQTVADMIKGKTPE 127

Query: 126 EIRRILNITNDFTPEEEAEIREQNGW 149
           EIR   NI NDFTPEEE  +R++N W
Sbjct: 128 EIRSTFNIENDFTPEEEEAVRKENQW 149

[Close]

BLAST of Cp4.1LG01g14620 vs. TAIR10
Match: AT2G03170.1 (AT2G03170.1 SKP1-like 14)

HSP 1 Score: 123.2 bits (308), Expect = 1.4e-28
Identity = 63/143 (44.06%), Postives = 93/143 (65.03%), Query Frame = 1


Query: 6   LKSSDNKIFKVSEEIAIQSAVIKSFLEDFGSDSDEIVIPLPNVSGRILEIVIEWIVKHAD 65
           L SSD + F+V E +A +  +++  +ED   D     +PL NV+G+IL IV+E+  KH  
Sbjct: 8   LSSSDGESFEVEEAVARKLKIVEHMIED---DCVVTEVPLQNVTGKILSIVVEYCKKHVV 67

Query: 66  DELTKEEVQDWENKFMNDLNMEVTTELVMAANYLEVIGLLHRTCQSIADQISGKSPEEIR 125
           DE   +E + W+ +FM   +     +L++AANYL + GLL  + Q++AD+I  K+PEEIR
Sbjct: 68  DE-ESDEFKTWDEEFMKKFDQPTVFQLLLAANYLNIKGLLDLSAQTVADRIKDKTPEEIR 127

Query: 126 RILNITNDFTPEEEAEIREQNGW 149
            I NI NDFTPEEEA +R++N W
Sbjct: 128 EIFNIENDFTPEEEAAVRKENAW 146

[Close]

BLAST of Cp4.1LG01g14620 vs. TAIR10
Match: AT1G20140.1 (AT1G20140.1 SKP1-like 4)

HSP 1 Score: 122.1 bits (305), Expect = 3.2e-28
Identity = 64/155 (41.29%), Postives = 100/155 (64.52%), Query Frame = 1


Query: 6   LKSSDNKIFKVSEEIAIQSAVIKSFLEDFGSDSDEIVIPLPNVSGRILEIVIEWIVKHAD 65
           LKSSD + F++ E +A++S  IK  +ED  +D+    IPLPNV+G IL  VIE+  KH +
Sbjct: 10  LKSSDGESFEIEEAVAVKSQTIKHMIEDDCADNG---IPLPNVTGAILAKVIEYCKKHVE 69

Query: 66  ------------DELTKEEVQDWENKFMNDLNMEVTTELVMAANYLEVIGLLHRTCQSIA 125
                            +E+++W+++F+  ++     +L++AANYL + GLL  TC+++A
Sbjct: 70  AAAEAGGDKDFYGSAENDELKNWDSEFVK-VDQPTLFDLILAANYLNIGGLLDLTCKAVA 129

Query: 126 DQISGKSPEEIRRILNITNDFTPEEEAEIREQNGW 149
           DQ+ GK+PE++R   NI ND+TPEEEAE+R +N W
Sbjct: 130 DQMRGKTPEQMRAHFNIKNDYTPEEEAEVRNENKW 160

[Close]

BLAST of Cp4.1LG01g14620 vs. TAIR10
Match: AT5G42190.1 (AT5G42190.1 E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein)

HSP 1 Score: 121.7 bits (304), Expect = 4.1e-28
Identity = 68/169 (40.24%), Postives = 102/169 (60.36%), Query Frame = 1


Query: 1   MRTFQLKSSDNKIFKVSEEIAIQSAVIKSFLEDFGSDSDEIVIPLPNVSGRILEIVIEWI 60
           +R   LKSSD + F++ E +A++S  IK  +ED  +D+    IPLPNV+ +IL  VIE+ 
Sbjct: 4   VRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNG---IPLPNVTSKILSKVIEYC 63

Query: 61  VKHAD----DELTK-----------------EEVQDWENKFMNDLNMEVTTELVMAANYL 120
            +H +     E T                  E+++ W+++F+  ++     +L++AANYL
Sbjct: 64  KRHVEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIK-VDQGTLFDLILAANYL 123

Query: 121 EVIGLLHRTCQSIADQISGKSPEEIRRILNITNDFTPEEEAEIREQNGW 149
            + GLL  TCQ++AD I GK+PEEIR+  NI NDFTPEEE E+R +N W
Sbjct: 124 NIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQW 168

[Close]

BLAST of Cp4.1LG01g14620 vs. TAIR10
Match: AT4G34470.1 (AT4G34470.1 SKP1-like 12)

HSP 1 Score: 120.9 bits (302), Expect = 7.1e-28
Identity = 69/146 (47.26%), Postives = 91/146 (62.33%), Query Frame = 1


Query: 6   LKSSDNKIFKVSEEIAIQSAVIKSFLEDFGSDSDEIVIPLPNVSGRILEIVIEWIVKHAD 65
           L SSD + F+V E +AIQS  I   +ED   D     IPL NV  +IL  VIE+  K+  
Sbjct: 8   LMSSDGQSFEVEEAVAIQSQTIAHMVED---DCVADGIPLANVESKILVKVIEYCKKYHV 67

Query: 66  DE---LTKEEVQDWENKFMNDLNMEVTTELVMAANYLEVIGLLHRTCQSIADQISGKSPE 125
           DE   +++E++  W+ KFM DL      EL++AANYL +  L   TCQ++AD I GK+PE
Sbjct: 68  DEANPISEEDLNKWDEKFM-DLEQSTIFELILAANYLNIKSLFDLTCQTVADMIKGKTPE 127

Query: 126 EIRRILNITNDFTPEEEAEIREQNGW 149
           EIR   NI NDFTPEEE  +R++N W
Sbjct: 128 EIRSTFNIENDFTPEEEEAVRKENQW 149

[Close]

BLAST of Cp4.1LG01g14620 vs. NCBI nr
Match: gi|659091990|ref|XP_008446842.1| (PREDICTED: SKP1-like protein 12 [Cucumis melo])

HSP 1 Score: 202.2 bits (513), Expect = 6.8e-49
Identity = 95/153 (62.09%), Postives = 123/153 (80.39%), Query Frame = 1


Query: 1   MRTFQLKSSDNKIFKVSEEIAIQSAVIKSFLEDFGSDSDEIVIPLPNVSGRILEIVIEWI 60
           MRT  L+SS+N+IFKVSEE+A QS V+++FLE+  S+ DEI IPLPN+SG++L +VIEWI
Sbjct: 1   MRTVNLRSSENEIFKVSEEVAKQSVVVRNFLEEDNSNGDEITIPLPNISGKLLGMVIEWI 60

Query: 61  VKHADDELTKEEVQDWENKFMNDLNMEVTTELVMAANYLEVIGLLHRTCQSIADQISGKS 120
             H +++L +E++  W+ KFM DL++++  EL+MAANYLEV  L H TCQ +AD+ISGKS
Sbjct: 61  AMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120

Query: 121 PEEIRRILNITNDFTPEEEAEIREQNGWDLNPS 154
           PEEIR+I NITNDFTPEEEAEIR QN W   PS
Sbjct: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPS 153

[Close]

BLAST of Cp4.1LG01g14620 vs. NCBI nr
Match: gi|449449372|ref|XP_004142439.1| (PREDICTED: SKP1-like protein 14 [Cucumis sativus])

HSP 1 Score: 200.3 bits (508), Expect = 2.6e-48
Identity = 96/158 (60.76%), Postives = 124/158 (78.48%), Query Frame = 1


Query: 1   MRTFQLKSSDNKIFKVSEEIAIQSAVIKSFLEDFGSDSDEIVIPLPNVSGRILEIVIEWI 60
           MR   L+SS+N+IFKVSEE+A QS V++ FLE+  S++DEI IPLPN+SGR+L +VIEWI
Sbjct: 1   MRIVNLRSSENEIFKVSEEVAKQSVVVRIFLEEDDSNNDEITIPLPNISGRLLGMVIEWI 60

Query: 61  VKHADDELTKEEVQDWENKFMNDLNMEVTTELVMAANYLEVIGLLHRTCQSIADQISGKS 120
           V H +++L +E +  W+ KF+ DL++++  EL+MAANYLEV  L H TCQ +AD+ISGKS
Sbjct: 61  VMHVEEKLAEEALHAWKTKFLEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120

Query: 121 PEEIRRILNITNDFTPEEEAEIREQNGWDLNPSTTDDG 159
           PEEIR+I NITNDFTPEEEAEIR QN W   PS +  G
Sbjct: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGSG 158

[Close]

BLAST of Cp4.1LG01g14620 vs. NCBI nr
Match: gi|156389287|ref|XP_001634923.1| (predicted protein [Nematostella vectensis])

HSP 1 Score: 139.0 bits (349), Expect = 7.1e-30
Identity = 71/159 (44.65%), Postives = 105/159 (66.04%), Query Frame = 1


Query: 1   MRTFQLKSSDNKIFKVSEEIAIQSAVIKSFLEDFGSDSDEI-VIPLPNVSGRILEIVIEW 60
           M   +L+SSD +IF+V  EIA QS  IK+ LED G D D+   +PLPNV+  IL+ VI+W
Sbjct: 1   MPNIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDEDDDDAVPLPNVNAAILKKVIQW 60

Query: 61  IVKHADD----------ELTKEEVQDWENKFMNDLNMEVTTELVMAANYLEVIGLLHRTC 120
             +H DD          E   ++++ W+ +F+  ++     EL++AANYL++ GLL  TC
Sbjct: 61  ATRHKDDPPPPDDDENKEKRTDDIEPWDQEFLK-VDQGTLFELILAANYLDIKGLLDVTC 120

Query: 121 QSIADQISGKSPEEIRRILNITNDFTPEEEAEIREQNGW 149
           +++A+ I GK+PEEIR+  NI NDFTPEEE ++R++N W
Sbjct: 121 KTVANMIKGKTPEEIRKTFNIKNDFTPEEEEQVRKENEW 158

[Close]

BLAST of Cp4.1LG01g14620 vs. NCBI nr
Match: gi|384485660|gb|EIE77840.1| (E3 ubiquitin ligase complex SCF subunit sconC [Rhizopus delemar RA 99-880])

HSP 1 Score: 137.5 bits (345), Expect = 2.1e-29
Identity = 71/150 (47.33%), Postives = 103/150 (68.67%), Query Frame = 1


Query: 6   LKSSDNKIFKVSEEIAIQSAVIKSFLEDFGSDSDEIVIPLPNVSGRILEIVIEWIVKHAD 65
           L SSDN+ FKV +E+A +S +IK+ LED G    E  IPLPNV+ +IL  VIEW   H D
Sbjct: 5   LSSSDNEEFKVDKEVAQRSVLIKNMLEDVG--DSEAPIPLPNVTAKILGKVIEWCTHHRD 64

Query: 66  DELTKE-------EVQDWENKFMNDLNMEVTTELVMAANYLEVIGLLHRTCQSIADQISG 125
           D +T +       ++ +W+ KFM +++ E   ++++AANYL++  LL   C+++A+ I G
Sbjct: 65  DPITPDDQERRNTDIDEWDQKFM-EVDQETLFDIILAANYLDIKPLLDVGCKTVANMIKG 124

Query: 126 KSPEEIRRILNITNDFTPEEEAEIREQNGW 149
           K+ EEIRR  NITNDFTPEEEA+I+++N W
Sbjct: 125 KTAEEIRRTFNITNDFTPEEEAQIKKENEW 151

[Close]

BLAST of Cp4.1LG01g14620 vs. NCBI nr
Match: gi|999973223|gb|KXJ12397.1| (S-phase kinase-associated protein 1 [Exaiptasia pallida])

HSP 1 Score: 137.1 bits (344), Expect = 2.7e-29
Identity = 71/159 (44.65%), Postives = 103/159 (64.78%), Query Frame = 1


Query: 1   MRTFQLKSSDNKIFKVSEEIAIQSAVIKSFLEDFGSDSDEI-VIPLPNVSGRILEIVIEW 60
           M   +L+SSD +IF+V  EIA QS  IK+ LED G D D+   +PLPNV+  IL+ VI+W
Sbjct: 1   MPNIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDEDDDDAVPLPNVNAAILKKVIQW 60

Query: 61  IVKHADD----------ELTKEEVQDWENKFMNDLNMEVTTELVMAANYLEVIGLLHRTC 120
              H DD          E   +++  W+ +F+  ++     EL++AANYL++ GLL  TC
Sbjct: 61  ATHHKDDPPPPDDDENKEKRTDDIDPWDQEFLK-VDQGTLFELILAANYLDIKGLLDVTC 120

Query: 121 QSIADQISGKSPEEIRRILNITNDFTPEEEAEIREQNGW 149
           +++A+ I GK+PEEIR+  NI NDFTPEEE ++R++N W
Sbjct: 121 KTVANMIKGKTPEEIRKTFNIKNDFTPEEEEQVRKENEW 158

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g14620 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SKP1_RAT	4.9e-31	45.00	S-phase kinase-associated protein 1 OS=Rattus norvegicus GN=Skp1 PE=1 SV=3	[more]
SKP1_MOUSE	4.9e-31	45.00	S-phase kinase-associated protein 1 OS=Mus musculus GN=Skp1 PE=1 SV=3	[more]
SKP1_BOVIN	1.4e-30	44.38	S-phase kinase-associated protein 1 OS=Bos taurus GN=SKP1 PE=2 SV=1	[more]
SKP1_MACFA	1.4e-30	44.38	S-phase kinase-associated protein 1 OS=Macaca fascicularis GN=SKP1 PE=2 SV=1	[more]
SKP1_HUMAN	1.4e-30	44.38	S-phase kinase-associated protein 1 OS=Homo sapiens GN=SKP1 PE=1 SV=2	[more]

BLAST of Cp4.1LG01g14620 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRJ8_CUCSA	1.8e-48	60.76	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G622630 PE=3 SV=1	[more]
A7S0E4_NEMVE	5.0e-30	44.65	Predicted protein OS=Nematostella vectensis GN=v1g164893 PE=3 SV=1	[more]
A0A0C9QLX3_9SPER	6.5e-30	47.02	TSA: Wollemia nobilis Ref_Wollemi_Transcript_25686_867 transcribed RNA sequence ...	[more]
I1BNR0_RHIO9	1.4e-29	47.33	E3 ubiquitin ligase complex SCF subunit sconC OS=Rhizopus delemar (strain RA 99-...	[more]
H3BAE1_LATCH	2.5e-29	45.63	Uncharacterized protein OS=Latimeria chalumnae GN=SKP1 PE=3 SV=1	[more]

BLAST of Cp4.1LG01g14620 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G34210.1	2.9e-29	48.63	SKP1-like 11	[more]
AT2G03170.1	1.4e-28	44.06	SKP1-like 14	[more]
AT1G20140.1	3.2e-28	41.29	SKP1-like 4	[more]
AT5G42190.1	4.1e-28	40.24	E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein	[more]
AT4G34470.1	7.1e-28	47.26	SKP1-like 12	[more]

BLAST of Cp4.1LG01g14620 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659091990\|ref\|XP_008446842.1\|	6.8e-49	62.09	PREDICTED: SKP1-like protein 12 [Cucumis melo]	[more]
gi\|449449372\|ref\|XP_004142439.1\|	2.6e-48	60.76	PREDICTED: SKP1-like protein 14 [Cucumis sativus]	[more]
gi\|156389287\|ref\|XP_001634923.1\|	7.1e-30	44.65	predicted protein [Nematostella vectensis]	[more]
gi\|384485660\|gb\|EIE77840.1\|	2.1e-29	47.33	E3 ubiquitin ligase complex SCF subunit sconC [Rhizopus delemar RA 99-880]	[more]
gi\|999973223\|gb\|KXJ12397.1\|	2.7e-29	44.65	S-phase kinase-associated protein 1 [Exaiptasia pallida]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006511	ubiquitin-dependent protein catabolic process

Vocabulary: **INTERPRO**
Term	Definition
IPR016897	SKP1
IPR016073	Skp1_comp_POZ
IPR016072	Skp1_comp_dimer
IPR011333	SKP1/BTB/POZ_sf
IPR001232	SKP1-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031145	anaphase-promoting complex-dependent catabolic process
biological_process	GO:0051437	positive regulation of ubiquitin-protein ligase activity involved in regulation of mitotic cell cycle transition
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
biological_process	GO:0016032	viral process
biological_process	GO:0033209	tumor necrosis factor-mediated signaling pathway
biological_process	GO:0007623	circadian rhythm
biological_process	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
biological_process	GO:0051439	regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle
biological_process	GO:0002223	stimulatory C-type lectin receptor signaling pathway
biological_process	GO:0007219	Notch signaling pathway
biological_process	GO:0000084	mitotic S phase
biological_process	GO:0000080	mitotic G1 phase
biological_process	GO:0035518	histone H2A monoubiquitination
biological_process	GO:0000086	G2/M transition of mitotic cell cycle
biological_process	GO:0000082	G1/S transition of mitotic cell cycle
biological_process	GO:0038095	Fc-epsilon receptor signaling pathway
biological_process	GO:0038061	NIK/NF-kappaB signaling
cellular_component	GO:0019005	SCF ubiquitin ligase complex
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0070062	extracellular exosome
cellular_component	GO:0031519	PcG protein complex
cellular_component	GO:0005654	nucleoplasm
cellular_component	GO:0005829	cytosol
cellular_component	GO:0031467	Cul7-RING ubiquitin ligase complex
molecular_function	GO:0005515	protein binding
molecular_function	GO:0004842	ubiquitin-protein transferase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g14620.1	Cp4.1LG01g14620.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001232	S-phase kinase-associated protein 1-like	SMART	SM00512	skp1_3	coord: 1..101 score: 9.4
IPR011333	SKP1/BTB/POZ domain	unknown	SSF54695	POZ domain	coord: 3..67 score: 9.16
IPR016072	SKP1 component, dimerisation	PFAM	PF01466	Skp1	coord: 103..148 score: 5.9
IPR016072	SKP1 component, dimerisation	unknown	SSF81382	Skp1 dimerisation domain-like	coord: 74..148 score: 2.22
IPR016073	SKP1 component, POZ domain	PFAM	PF03931	Skp1_POZ	coord: 4..64 score: 5.9
IPR016897	S-phase kinase-associated protein 1	PIR	PIRSF028729	SCF_Skp	coord: 1..151 score: 1.2
None	No IPR available	GENE3D	G3DSA:3.30.710.10		coord: 1..148 score: 4.2
None	No IPR available	PANTHER	PTHR11165	SKP1	coord: 1..152 score: 1.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG01g14620	Cucsa.308560	Cucumber (Gy14) v1	cgycpeB0806
Cp4.1LG01g14620	CmaCh04G013820	Cucurbita maxima (Rimu)	cmacpeB720
Cp4.1LG01g14620	CmoCh04G014530	Cucurbita moschata (Rifu)	cmocpeB673
Cp4.1LG01g14620	Cla020544	Watermelon (97103) v1	cpewmB427
Cp4.1LG01g14620	Csa5G622630	Cucumber (Chinese Long) v2	cpecuB439
Cp4.1LG01g14620	MELO3C012407	Melon (DHL92) v3.5.1	cpemeB363
Cp4.1LG01g14620	ClCG05G021200	Watermelon (Charleston Gray)	cpewcgB388
Cp4.1LG01g14620	CSPI05G26930	Wild cucumber (PI 183967)	cpecpiB439
Cp4.1LG01g14620	Lsi04G000870	Bottle gourd (USVL1VR-Ls)	cpelsiB352
Cp4.1LG01g14620	MELO3C012407.2	Melon (DHL92) v3.6.1	cpemedB423
Cp4.1LG01g14620	CsaV3_5G036070	Cucumber (Chinese Long) v3	cpecucB0543
Cp4.1LG01g14620	Bhi07G000716	Wax gourd	cpewgoB0569
Cp4.1LG01g14620	CsGy5G026380	Cucumber (Gy14) v2	cgybcpeB648
Cp4.1LG01g14620	Carg01943	Silver-seed gourd	carcpeB1177

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g14620	Melon (DHL92) v3.6.1	cpemedB469
Cp4.1LG01g14620	Silver-seed gourd	carcpeB0369
Cp4.1LG01g14620	Silver-seed gourd	carcpeB0678
Cp4.1LG01g14620	Silver-seed gourd	carcpeB0963
Cp4.1LG01g14620	Wax gourd	cpewgoB0535
Cp4.1LG01g14620	Cucurbita pepo (Zucchini)	cpecpeB040
Cp4.1LG01g14620	Cucurbita pepo (Zucchini)	cpecpeB208
Cp4.1LG01g14620	Cucurbita pepo (Zucchini)	cpecpeB379
Cp4.1LG01g14620	Cucurbita maxima (Rimu)	cmacpeB313
Cp4.1LG01g14620	Cucurbita maxima (Rimu)	cmacpeB429
Cp4.1LG01g14620	Cucurbita maxima (Rimu)	cmacpeB733
Cp4.1LG01g14620	Cucurbita moschata (Rifu)	cmocpeB275
Cp4.1LG01g14620	Cucurbita moschata (Rifu)	cmocpeB392
Cp4.1LG01g14620	Cucurbita moschata (Rifu)	cmocpeB689
Cp4.1LG01g14620	Bottle gourd (USVL1VR-Ls)	cpelsiB384
Cp4.1LG01g14620	Watermelon (Charleston Gray)	cpewcgB416
Cp4.1LG01g14620	Watermelon (97103) v1	cpewmB394
Cp4.1LG01g14620	Melon (DHL92) v3.5.1	cpemeB404