Lsi03G001020 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi03G001020
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Family of Uncharacterized protein function (DUF662)
Location	chr03 : 1424021 .. 1427300 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTGGTTCCAAAATTTCACAACAGAAGCAGAGCAGAGTGCACAGGTGAAATCTCTCTATTGCTAGACAATTAGGTGAGATTCAAAATGGATAACGATGTCTGTTGAGAAGTAATAAGGTAAAGTAAAGAGAGAGAGAGAGGGATTGGGTTTAGGGTTACATACATACCTTTAAAGCCATTGCGGCGCTTTAGGGTTTGGCCACCTAACAGAGAAAGAGAATAATCATTTGCGAGAGAGAGAGAGATTGGGGATGACGACGCAGAAACAGAGCTGGGAAGCGCAACAATCGCAACAGATGCAGAGGGTGAAGAGCTCGGGGATGATAAGCAGCCATGTGAATGCGATTGGGAGTCCGTTGAAGGAGGATCAAGAGGAGGAGCTTTCGCGATCGGCGTTGGCTCTGTTCAGAGCTAAGGAAGAGGAGATCGAGAGGAAGAAGATGGAGATGAGAGAAAAGGTGGAAGCTCGCCTTGGAAGAGCTGAAGAAGCAACGAAGCGATTGGCGGAGATTCGCGAAGTAAGTGTGGAATCCTCCATTGATGATGGTTAATAATGATTGGTTTTGAGGTTTTTCCACTGATTAGGGTTTGTGAAATTGATAGGAACTTGAAGGAATGACGGATCCGATGAGGAAGGAAGTTTCGTTCATACGGAAGAAGATTGATTTGGTCAACAAAGAGTTGAAGCCATTGGGACTCACTTGCCAAAAGAAGGTCACAATTTCAAACTCCACAAATCCCTCTTCAATCTTCTATTATCATTTTGGTTATGATATTTTTAAGTTTATGTTGTTTTTAAATATAGAAAAATGAATCAAACTATTTATAAATATTAAAAAATTTTAATGGGTCGCGATAGAATTATAAAAGTAATTTTCTATCACTCAAGCGTATTACATTTGTAAATAGTTTGATGTTTTTTCTATTTTTAATAATTTTTTCTTTAGTTATCTAAAAAATGTCTATTTTAAATTTTAAACTCCAAAAAATATTAGATTGTTTTCAAATGTAGAAAGATGAGTCAAACTATTTACAAATATAGAAAATTTTTACAGTCTATCAGTGATAGACCCGCTTGAGCGATAGAAAGCGATAGAATTCTATCGCGGTCTATCACTGATAGACAGTTAAATTTTTCTATATTTGTAAATAATATGATATTTTTTTTATATTTATAGTAATTTCCCAAAAATATTAGTGGTAGTGTTTGAAATTTCAACACCATTATATTTTGGTCCTAAATTTTTTAAGAATATCCATCCATGTGTTGGAACTTTCAAAATATACATCTTTATTTAGTGTTTAAACTTTAATTTAACCACATATAAGGATGTGAGAATTCAAATCACCGACCTCTTAAAAAAGATATACATTTAACCCATTTGAACTATATGCACGAACCTGACAAACTCTAGATTTTGGTATATCTCAGTTCTAAGTTTTAAAAAGTAAAATGAGATTCGCAGCAATTAAATAAGTCTCATCTAATAAAATAGTGACATGATTAAATATAAGGGGATTTTTAAAAATAAAAAAATAAGGGAAGCTATTTACACAAAATAGCAAAATTTTTAGATAGTTGTGATAGACGTTGATAGAAGTCTATCATGGTCTATAAGTGATATAAATGATAAAAGGTTATCATTGATAGATGTTGATAGAAGTCTATCAATGTCTATGAGTATTTTTTTGCTATTTTTTATAAATTATTTGACATTTTTTCTATATGTGAAAATTTCCCTTAAATATAAATGAGATATTTGTTCTATTATTATTATATTTATTTATTATTTATTATTTTTAGACTTGAAGCATAGCATAGTGTGCATAATTAATATTTTGATTTATTTGGGCCCTACCAGGAGAGAGAATACAAAGAAGTCCTAGATTTATTTAACGAGAAGAACAAAGAGAAATCTCAATTGGTAGCCAAACTAATGGAGGTGACTTTTTTTTCCCTTCCTCTCCCTAAGGGCTTATATGTTATTAAAGTTTTAGTTCATATGTTTTAATTTTTAATTTCGAGGGCTAACTATATAGACATTCAATCTAATTGCAATGAAGAGCATGTTTAGGACTAATAATTAAGTGTACAACAATACTTTTAAAGAATTGCAAATATAACAAAATCTATCGGTGATAGGCTCTATCGTTGATAGACTTTTACAAGTGATATAGTCAATTACTTATTGACTTGAGAACTGGATCTAAATTTTGCTATATAAATATCTTTTTAAATGAGTCCTAATTTTTATGTATGTCTATAGTTATCATATTTTTCATAAAAAGCGTTTTCATAAGGGTAATTATTTTAAATAGCAAAAGGTTAAAAATATTTTTTAATATATCAAAATGTCATTGTCTATTAATAATAGATAGTGATAAATATATAGACTACTATCATCTATCAGTGAACTGATAGATACTGATAGAATTCTATCGCTTGAGCAATAGTTCCAAAACTTATATAAGTGTTTACAAATATAGAAATTTTTTACTATCTATCAGCGATAGAAAACGATAGAATTCTACTGTGATCTATCGCTGATAGACAGCAAATTTTTTTCTATATTTATAAATAGTTTGACTCATTTTTCTATATTTGAAAACAATGACCCTAATATTTATTTTAATTTTTAATTTTAAAAATTTTGATGAAGTTTACCAAACTTTCATAATTTTATAACATAAAAACAACGGAATAAATTTAGTATTGTTTTAGTAAAGAATAAATATAGTATAAACTATCATTACTATAGCTAAAATGAGTATAGTAGCTATAATTGACATGTAATCTCTCACTTGATCATCAAAAGTTCGATTTCTATTTTCGTGATTGTTGAATATATATGATCGAATTTTAGACTTTTGATTGCTAACATATTTGATTGTATATTTGAATAATTTGGTCAGTTGGTGAATGAGAGCGAAAAATTGAGGATGAAGAAGTTGGAAGAGCTGAGCAAGAACATTGACATCCTTCATTAAGAAAAGTTGTTCTTATTAAGTTCTAACTCAAATTAATCACCAACTTTGTTTGTATTTCAACCATTTTTTTTCTCCTTCTCATTACATTTTTTTTTCTTGAAAGTTTCCCATGAGAAAGAAAAGAGAGAGGAGGGAGAAAAAAAGAAAAAAAGAGGAAAATTTTAACTTTGCCAAGTGAATATTACATTTGCTTGTATTAATAAGTTTCACAACCACAAGTGCTGTGTTGATAGTGTGATCCATGTTTGACAATCATCTTCTCATTTCATGTTGCAATTTCTTTTCTTTGCCC

mRNA sequence

TTTGGTTCCAAAATTTCACAACAGAAGCAGAGCAGAGTGCACAGGTGAAATCTCTCTATTGCTAGACAATTAGGTGAGATTCAAAATGGATAACGATGTCTGTTGAGAAGTAATAAGGTAAAGTAAAGAGAGAGAGAGAGGGATTGGGTTTAGGGTTACATACATACCTTTAAAGCCATTGCGGCGCTTTAGGGTTTGGCCACCTAACAGAGAAAGAGAATAATCATTTGCGAGAGAGAGAGAGATTGGGGATGACGACGCAGAAACAGAGCTGGGAAGCGCAACAATCGCAACAGATGCAGAGGGTGAAGAGCTCGGGGATGATAAGCAGCCATGTGAATGCGATTGGGAGTCCGTTGAAGGAGGATCAAGAGGAGGAGCTTTCGCGATCGGCGTTGGCTCTGTTCAGAGCTAAGGAAGAGGAGATCGAGAGGAAGAAGATGGAGATGAGAGAAAAGGTGGAAGCTCGCCTTGGAAGAGCTGAAGAAGCAACGAAGCGATTGGCGGAGATTCGCGAAGAACTTGAAGGAATGACGGATCCGATGAGGAAGGAAGTTTCGTTCATACGGAAGAAGATTGATTTGGTCAACAAAGAGTTGAAGCCATTGGGACTCACTTGCCAAAAGAAGGAGAGAGAATACAAAGAAGTCCTAGATTTATTTAACGAGAAGAACAAAGAGAAATCTCAATTGGTAGCCAAACTAATGGAGGTGACTTTTTTTTCCCTTCCTCTCCCTAAGGGCTTATATTTGGTGAATGAGAGCGAAAAATTGAGGATGAAGAAGTTGGAAGAGCTGAGCAAGAACATTGACATCCTTCATTAAGAAAAGTTGTTCTTATTAAGTTCTAACTCAAATTAATCACCAACTTTGTTTGTATTTCAACCATTTTTTTTCTCCTTCTCATTACATTTTTTTTTCTTGAAAGTTTCCCATGAGAAAGAAAAGAGAGAGGAGGGAGAAAAAAAGAAAAAAAGAGGAAAATTTTAACTTTGCCAAGTGAATATTACATTTGCTTGTATTAATAAGTTTCACAACCACAAGTGCTGTGTTGATAGTGTGATCCATGTTTGACAATCATCTTCTCATTTCATGTTGCAATTTCTTTTCTTTGCCC

Coding sequence (CDS)

ATGACGACGCAGAAACAGAGCTGGGAAGCGCAACAATCGCAACAGATGCAGAGGGTGAAGAGCTCGGGGATGATAAGCAGCCATGTGAATGCGATTGGGAGTCCGTTGAAGGAGGATCAAGAGGAGGAGCTTTCGCGATCGGCGTTGGCTCTGTTCAGAGCTAAGGAAGAGGAGATCGAGAGGAAGAAGATGGAGATGAGAGAAAAGGTGGAAGCTCGCCTTGGAAGAGCTGAAGAAGCAACGAAGCGATTGGCGGAGATTCGCGAAGAACTTGAAGGAATGACGGATCCGATGAGGAAGGAAGTTTCGTTCATACGGAAGAAGATTGATTTGGTCAACAAAGAGTTGAAGCCATTGGGACTCACTTGCCAAAAGAAGGAGAGAGAATACAAAGAAGTCCTAGATTTATTTAACGAGAAGAACAAAGAGAAATCTCAATTGGTAGCCAAACTAATGGAGGTGACTTTTTTTTCCCTTCCTCTCCCTAAGGGCTTATATTTGGTGAATGAGAGCGAAAAATTGAGGATGAAGAAGTTGGAAGAGCTGAGCAAGAACATTGACATCCTTCATTAA

Protein sequence

MTTQKQSWEAQQSQQMQRVKSSGMISSHVNAIGSPLKEDQEEELSRSALALFRAKEEEIERKKMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKPLGLTCQKKEREYKEVLDLFNEKNKEKSQLVAKLMEVTFFSLPLPKGLYLVNESEKLRMKKLEELSKNIDILH

Homology

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BLAST of Lsi03G001020 vs. TrEMBL
Match: A0A0A0LY59_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G153510 PE=4 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 1.1e-73
Identity = 168/191 (87.96%), Postives = 172/191 (90.05%), Query Frame = 1


Query: 1   MTTQKQSWEAQQSQQMQRVKSSGMISSHVN--AIGSPLKEDQEEELSRSALALFRAKEEE 60
           MTTQKQSWEAQQ   MQRVK+SGMISS+VN   IGSPLKEDQEEE+SRSALALFRAKEEE
Sbjct: 1   MTTQKQSWEAQQ---MQRVKNSGMISSNVNNGIIGSPLKEDQEEEISRSALALFRAKEEE 60

Query: 61  IERKKMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKP 120
           IERKKMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKP
Sbjct: 61  IERKKMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKP 120

Query: 121 LGLTCQKKEREYKEVLDLFNEKNKEKSQLVAKLMEVTFFSLPLPKGLYLVNESEKLRMKK 180
           LGLTCQKKEREYKEVLDLFNEKNKEKSQLV+KLME             LVNESEKLRMKK
Sbjct: 121 LGLTCQKKEREYKEVLDLFNEKNKEKSQLVSKLME-------------LVNESEKLRMKK 175

Query: 181 LEELSKNIDIL 190
           LEELSKNIDIL
Sbjct: 181 LEELSKNIDIL 175

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BLAST of Lsi03G001020 vs. TrEMBL
Match: C6TK18_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_11G188000 PE=2 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 9.5e-57
Identity = 133/192 (69.27%), Postives = 157/192 (81.77%), Query Frame = 1


Query: 1   MTTQKQSWEAQQSQQ--MQRVKSSGMISSHVNAIGSPLKEDQEEELSRSALALFRAKEEE 60
           M T KQS+E QQ QQ  +QRV++SGMI+S+     SP+++D+EEE+SRSALA+FRAKEEE
Sbjct: 1   MATPKQSYEQQQQQQPNVQRVRNSGMINSNQ----SPMRDDKEEEMSRSALAMFRAKEEE 60

Query: 61  IERKKMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKP 120
           IER+KME+R+KV A LGR EE TKRLAEIREELEG+TDP+RKEV+ +RKKID VNKELKP
Sbjct: 61  IERRKMEVRDKVHAYLGRVEEETKRLAEIREELEGLTDPLRKEVAIVRKKIDSVNKELKP 120

Query: 121 LGLTCQKKEREYKEVLDLFNEKNKEKSQLVAKLMEVTFFSLPLPKGLYLVNESEKLRMKK 180
           LG TCQ+KEREYKE L++FNEKNKEK+QLV KLME             LV ESEKLRMKK
Sbjct: 121 LGQTCQRKEREYKEALEVFNEKNKEKAQLVTKLME-------------LVTESEKLRMKK 175

Query: 181 LEELSKNIDILH 191
           LEELSKN+D LH
Sbjct: 181 LEELSKNLDTLH 175

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BLAST of Lsi03G001020 vs. TrEMBL
Match: A0A0B2S1V7_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_008207 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 9.5e-57
Identity = 133/192 (69.27%), Postives = 157/192 (81.77%), Query Frame = 1


Query: 1   MTTQKQSWEAQQSQQ--MQRVKSSGMISSHVNAIGSPLKEDQEEELSRSALALFRAKEEE 60
           M T KQS+E QQ QQ  +QRV++SGMI+S+     SP+++D+EEE+SRSALA+FRAKEEE
Sbjct: 1   MATPKQSYEQQQQQQPNVQRVRNSGMINSNQ----SPMRDDKEEEMSRSALAMFRAKEEE 60

Query: 61  IERKKMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKP 120
           IER+KME+R+KV A LGR EE TKRLAEIREELEG+TDP+RKEV+ +RKKID VNKELKP
Sbjct: 61  IERRKMEVRDKVHAYLGRVEEETKRLAEIREELEGLTDPLRKEVAIVRKKIDSVNKELKP 120

Query: 121 LGLTCQKKEREYKEVLDLFNEKNKEKSQLVAKLMEVTFFSLPLPKGLYLVNESEKLRMKK 180
           LG TCQ+KEREYKE L++FNEKNKEK+QLV KLME             LV ESEKLRMKK
Sbjct: 121 LGQTCQRKEREYKEALEVFNEKNKEKAQLVTKLME-------------LVTESEKLRMKK 175

Query: 181 LEELSKNIDILH 191
           LEELSKN+D LH
Sbjct: 181 LEELSKNLDTLH 175

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BLAST of Lsi03G001020 vs. TrEMBL
Match: A0A0B2QHZ0_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_006600 PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 1.6e-56
Identity = 133/193 (68.91%), Postives = 156/193 (80.83%), Query Frame = 1


Query: 1   MTTQKQSWEAQQSQQ---MQRVKSSGMISSHVNAIGSPLKEDQEEELSRSALALFRAKEE 60
           M T KQS+E QQ QQ   +QRV++SGMI+S+     SP+++D+EEE+SRSALA+FRAKEE
Sbjct: 1   MATPKQSYEQQQQQQQPNVQRVRNSGMINSNQ----SPMRDDKEEEMSRSALAMFRAKEE 60

Query: 61  EIERKKMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELK 120
           EIER+K+E+R+KV A LGR EE TKRLAEIREELEG+TDP+RKEV+ +RKKID VNKELK
Sbjct: 61  EIERRKVEVRDKVHAYLGRVEEETKRLAEIREELEGLTDPLRKEVAIVRKKIDSVNKELK 120

Query: 121 PLGLTCQKKEREYKEVLDLFNEKNKEKSQLVAKLMEVTFFSLPLPKGLYLVNESEKLRMK 180
           PLG TCQ+KEREYKE LD FNEKNKEK+QLV KLME             LV ESEKLRMK
Sbjct: 121 PLGQTCQRKEREYKEALDAFNEKNKEKAQLVTKLME-------------LVTESEKLRMK 176

Query: 181 KLEELSKNIDILH 191
           KLEELSKN+D LH
Sbjct: 181 KLEELSKNVDTLH 176

[Close]

BLAST of Lsi03G001020 vs. TrEMBL
Match: I1LRD5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_12G086500 PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 1.6e-56
Identity = 133/193 (68.91%), Postives = 156/193 (80.83%), Query Frame = 1


Query: 1   MTTQKQSWEAQQSQQ---MQRVKSSGMISSHVNAIGSPLKEDQEEELSRSALALFRAKEE 60
           M T KQS+E QQ QQ   +QRV++SGMI+S+     SP+++D+EEE+SRSALA+FRAKEE
Sbjct: 1   MATPKQSYEQQQQQQQPNVQRVRNSGMINSNQ----SPMRDDKEEEMSRSALAMFRAKEE 60

Query: 61  EIERKKMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELK 120
           EIER+K+E+R+KV A LGR EE TKRLAEIREELEG+TDP+RKEV+ +RKKID VNKELK
Sbjct: 61  EIERRKVEVRDKVHAYLGRVEEETKRLAEIREELEGLTDPLRKEVAIVRKKIDSVNKELK 120

Query: 121 PLGLTCQKKEREYKEVLDLFNEKNKEKSQLVAKLMEVTFFSLPLPKGLYLVNESEKLRMK 180
           PLG TCQ+KEREYKE LD FNEKNKEK+QLV KLME             LV ESEKLRMK
Sbjct: 121 PLGQTCQRKEREYKEALDAFNEKNKEKAQLVTKLME-------------LVTESEKLRMK 176

Query: 181 KLEELSKNIDILH 191
           KLEELSKN+D LH
Sbjct: 181 KLEELSKNVDTLH 176

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BLAST of Lsi03G001020 vs. TAIR10
Match: AT2G27740.1 (AT2G27740.1 Family of unknown function (DUF662) )

HSP 1 Score: 191.8 bits (486), Expect = 3.8e-49
Identity = 112/188 (59.57%), Postives = 147/188 (78.19%), Query Frame = 1


Query: 1   MTTQKQSWEAQQSQQMQRVKSSGMISSHVNAIGSPLKEDQEEELSRSALALFRAKEEEIE 60
           M T +Q  E  QS  +QR+KSSG IS +    GSP+ +++EEELS+SA ALF+AKE+EIE
Sbjct: 1   MATTRQILEQPQSPFIQRIKSSGNISMN----GSPMIDEKEEELSQSAFALFKAKEDEIE 60

Query: 61  RKKMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKPLG 120
           R+KME++++V+ +LG AEEAT+RLAEIREELE +TDPMRKE+S IRK++D +N+ELKPLG
Sbjct: 61  RRKMEVKDRVQKKLGLAEEATRRLAEIREELEALTDPMRKEISAIRKRVDAINRELKPLG 120

Query: 121 LTCQKKEREYKEVLDLFNEKNKEKSQLVAKLMEVTFFSLPLPKGLYLVNESEKLRMKKLE 180
            +CQ+KERE+KE L+ +NEKNKEK+  V+KL+E             LV ESEKLRM KLE
Sbjct: 121 QSCQRKEREFKEALEAYNEKNKEKAIFVSKLVE-------------LVTESEKLRMTKLE 171

Query: 181 ELSKNIDI 189
           ELSK+I+I
Sbjct: 181 ELSKSIEI 171

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BLAST of Lsi03G001020 vs. TAIR10
Match: AT3G09980.1 (AT3G09980.1 Family of unknown function (DUF662) )

HSP 1 Score: 186.0 bits (471), Expect = 2.1e-47
Identity = 104/151 (68.87%), Postives = 123/151 (81.46%), Query Frame = 1


Query: 40  QEEELSRSALALFRAKEEEIERKKMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMR 99
           ++EE+SR+AL+ FRAKEEEIE+KKME+RE+V+A+LGR EE TKRLA IREELEG+ DPMR
Sbjct: 41  EDEEMSRTALSAFRAKEEEIEKKKMEIRERVQAQLGRVEEETKRLALIREELEGLADPMR 100

Query: 100 KEVSFIRKKIDLVNKELKPLGLTCQKKEREYKEVLDLFNEKNKEKSQLVAKLMEVTFFSL 159
           KEV+ +RKKID VNKELKPLG T QKKEREYKE L+ FNEKN+EK QL+ +LME      
Sbjct: 101 KEVAMVRKKIDSVNKELKPLGHTVQKKEREYKEALEAFNEKNREKVQLITRLME------ 160

Query: 160 PLPKGLYLVNESEKLRMKKLEELSKNIDILH 191
                  LV ESEK+RMKKLEELSKNID +H
Sbjct: 161 -------LVGESEKMRMKKLEELSKNIDSIH 178

[Close]

BLAST of Lsi03G001020 vs. TAIR10
Match: AT2G36410.1 (AT2G36410.1 Family of unknown function (DUF662) )

HSP 1 Score: 176.0 bits (445), Expect = 2.2e-44
Identity = 108/185 (58.38%), Postives = 134/185 (72.43%), Query Frame = 1


Query: 3   TQKQSWEAQQSQQMQRVKSSGMISSHVNAIGSPLKEDQEEELSRSALALFRAKEEEIERK 62
           +Q Q    QQS +M     S   SSH++         ++EE++RSAL+ FRAKE+EIE++
Sbjct: 27  SQPQPQPQQQSNEMVLHTGSLSFSSHMSR--------EDEEMTRSALSAFRAKEDEIEKR 86

Query: 63  KMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKPLGLT 122
           +ME+RE+++A+LGR E+ TKRL+ IREELE M DPMRKEVS +RKKID VNKELKPLG T
Sbjct: 87  RMEVRERIQAQLGRVEQETKRLSTIREELESMADPMRKEVSVVRKKIDSVNKELKPLGST 146

Query: 123 CQKKEREYKEVLDLFNEKNKEKSQLVAKLMEVTFFSLPLPKGLYLVNESEKLRMKKLEEL 182
            QKKEREYKE LD FNEKN+EK QL+ KLME+            LV ESEKLRM KLEEL
Sbjct: 147 VQKKEREYKEALDTFNEKNREKVQLITKLMEME----------QLVGESEKLRMIKLEEL 193

Query: 183 SKNID 188
           SK+I+
Sbjct: 207 SKSIE 193

[Close]

BLAST of Lsi03G001020 vs. TAIR10
Match: AT3G52920.1 (AT3G52920.1 Family of unknown function (DUF662) )

HSP 1 Score: 175.3 bits (443), Expect = 3.7e-44
Identity = 111/187 (59.36%), Postives = 136/187 (72.73%), Query Frame = 1


Query: 1   MTTQKQSWEAQQSQQMQRVKSSGMISSHVNAIGSPLKEDQEEELSRSALALFRAKEEEIE 60
           MTT  ++   Q  QQM  +  S  +S          KED  EE++RSAL+ FRAKE+EIE
Sbjct: 1   MTTTNEA-TTQPPQQMMSLSFSSQMS----------KED--EEMARSALSAFRAKEDEIE 60

Query: 61  RKKMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKPLG 120
           ++KME+RE+V+A+LGR EE T+RLA IREELE M DPMRKEV+++RKKID VNKELKPLG
Sbjct: 61  KRKMEVRERVKAQLGRVEEETRRLASIREELETMADPMRKEVNWVRKKIDSVNKELKPLG 120

Query: 121 LTCQKKEREYKEVLDLFNEKNKEKSQLVAKLMEVTFFSLPLPKGLYLVNESEKLRMKKLE 180
            T QKKEREYKE LD FNEKN+EK QL+ KLME+            LV ESEKLR+KKL+
Sbjct: 121 STVQKKEREYKEALDTFNEKNREKVQLITKLMEMG----------QLVGESEKLRLKKLD 164

Query: 181 ELSKNID 188
           ELS++ID
Sbjct: 181 ELSRSID 164

[Close]

BLAST of Lsi03G001020 vs. TAIR10
Match: AT5G03660.1 (AT5G03660.1 Family of unknown function (DUF662) )

HSP 1 Score: 162.9 bits (411), Expect = 1.9e-40
Identity = 101/176 (57.39%), Postives = 125/176 (71.02%), Query Frame = 1


Query: 13  SQQMQRVKSSGMISSHVNAIGSPLKEDQEEELSRSALALFRAKEEEIERKKMEMREKVEA 72
           S Q +R+K    +S  ++      KED  +ELS  AL+ F+AKEEEIE+KKME+RE+V+A
Sbjct: 12  SDQGRRLKDQ--LSESMSFSSQMKKED--DELSMKALSAFKAKEEEIEKKKMEIRERVQA 71

Query: 73  RLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKPLGLTCQKKEREYKE 132
           +LGR E+ +KRLA IREELEG  DPMRKEV+ +RKKID ++KELKPLG T QKKE EYK+
Sbjct: 72  QLGRVEDESKRLAMIREELEGFADPMRKEVTMVRKKIDSLDKELKPLGNTVQKKETEYKD 131

Query: 133 VLDLFNEKNKEKSQLVAKLMEVTFFSLPLPKGLYLVNESEKLRMKKLEELSKNIDI 189
            L+ FNEKNKEK +L+ KL E             L  ESEK R KKLEELSKNID+
Sbjct: 132 ALEAFNEKNKEKVELITKLQE-------------LEGESEKFRFKKLEELSKNIDL 170

[Close]

BLAST of Lsi03G001020 vs. NCBI nr
Match: gi|659071754|ref|XP_008461743.1| (PREDICTED: RAB6-interacting golgin [Cucumis melo])

HSP 1 Score: 285.8 bits (730), Expect = 5.5e-74
Identity = 167/191 (87.43%), Postives = 173/191 (90.58%), Query Frame = 1


Query: 1   MTTQKQSWEAQQSQQMQRVKSSGMISSHVN-AIGSPLKEDQEEELSRSALALFRAKEEEI 60
           MTTQKQSWEAQQ   MQRVK+SGMISS+VN  IGSPLKEDQEEE+SRSALALFRAKEEEI
Sbjct: 1   MTTQKQSWEAQQ---MQRVKNSGMISSNVNNGIGSPLKEDQEEEISRSALALFRAKEEEI 60

Query: 61  ERKKMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKPL 120
           ERKKMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKPL
Sbjct: 61  ERKKMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKPL 120

Query: 121 GLTCQKKEREYKEVLDLFNEKNKEKSQLVAKLMEVTFFSLPLPKGLYLVNESEKLRMKKL 180
           GLTCQKKEREYKEVLDLFNEKN+EKSQLV+KLME             LVNESEKLRM+KL
Sbjct: 121 GLTCQKKEREYKEVLDLFNEKNREKSQLVSKLME-------------LVNESEKLRMRKL 175

Query: 181 EELSKNIDILH 191
           EELSKNIDILH
Sbjct: 181 EELSKNIDILH 175

[Close]

BLAST of Lsi03G001020 vs. NCBI nr
Match: gi|449443426|ref|XP_004139478.1| (PREDICTED: uncharacterized protein LOC101203874 [Cucumis sativus])

HSP 1 Score: 284.3 bits (726), Expect = 1.6e-73
Identity = 168/191 (87.96%), Postives = 172/191 (90.05%), Query Frame = 1


Query: 1   MTTQKQSWEAQQSQQMQRVKSSGMISSHVN--AIGSPLKEDQEEELSRSALALFRAKEEE 60
           MTTQKQSWEAQQ   MQRVK+SGMISS+VN   IGSPLKEDQEEE+SRSALALFRAKEEE
Sbjct: 1   MTTQKQSWEAQQ---MQRVKNSGMISSNVNNGIIGSPLKEDQEEEISRSALALFRAKEEE 60

Query: 61  IERKKMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKP 120
           IERKKMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKP
Sbjct: 61  IERKKMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKP 120

Query: 121 LGLTCQKKEREYKEVLDLFNEKNKEKSQLVAKLMEVTFFSLPLPKGLYLVNESEKLRMKK 180
           LGLTCQKKEREYKEVLDLFNEKNKEKSQLV+KLME             LVNESEKLRMKK
Sbjct: 121 LGLTCQKKEREYKEVLDLFNEKNKEKSQLVSKLME-------------LVNESEKLRMKK 175

Query: 181 LEELSKNIDIL 190
           LEELSKNIDIL
Sbjct: 181 LEELSKNIDIL 175

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BLAST of Lsi03G001020 vs. NCBI nr
Match: gi|359807315|ref|NP_001241375.1| (uncharacterized protein LOC100796368 [Glycine max])

HSP 1 Score: 228.0 bits (580), Expect = 1.4e-56
Identity = 133/192 (69.27%), Postives = 157/192 (81.77%), Query Frame = 1


Query: 1   MTTQKQSWEAQQSQQ--MQRVKSSGMISSHVNAIGSPLKEDQEEELSRSALALFRAKEEE 60
           M T KQS+E QQ QQ  +QRV++SGMI+S+     SP+++D+EEE+SRSALA+FRAKEEE
Sbjct: 1   MATPKQSYEQQQQQQPNVQRVRNSGMINSNQ----SPMRDDKEEEMSRSALAMFRAKEEE 60

Query: 61  IERKKMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKP 120
           IER+KME+R+KV A LGR EE TKRLAEIREELEG+TDP+RKEV+ +RKKID VNKELKP
Sbjct: 61  IERRKMEVRDKVHAYLGRVEEETKRLAEIREELEGLTDPLRKEVAIVRKKIDSVNKELKP 120

Query: 121 LGLTCQKKEREYKEVLDLFNEKNKEKSQLVAKLMEVTFFSLPLPKGLYLVNESEKLRMKK 180
           LG TCQ+KEREYKE L++FNEKNKEK+QLV KLME             LV ESEKLRMKK
Sbjct: 121 LGQTCQRKEREYKEALEVFNEKNKEKAQLVTKLME-------------LVTESEKLRMKK 175

Query: 181 LEELSKNIDILH 191
           LEELSKN+D LH
Sbjct: 181 LEELSKNLDTLH 175

[Close]

BLAST of Lsi03G001020 vs. NCBI nr
Match: gi|734375883|gb|KHN21121.1| (hypothetical protein glysoja_006600 [Glycine soja])

HSP 1 Score: 227.3 bits (578), Expect = 2.3e-56
Identity = 133/193 (68.91%), Postives = 156/193 (80.83%), Query Frame = 1


Query: 1   MTTQKQSWEAQQSQQ---MQRVKSSGMISSHVNAIGSPLKEDQEEELSRSALALFRAKEE 60
           M T KQS+E QQ QQ   +QRV++SGMI+S+     SP+++D+EEE+SRSALA+FRAKEE
Sbjct: 1   MATPKQSYEQQQQQQQPNVQRVRNSGMINSNQ----SPMRDDKEEEMSRSALAMFRAKEE 60

Query: 61  EIERKKMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELK 120
           EIER+K+E+R+KV A LGR EE TKRLAEIREELEG+TDP+RKEV+ +RKKID VNKELK
Sbjct: 61  EIERRKVEVRDKVHAYLGRVEEETKRLAEIREELEGLTDPLRKEVAIVRKKIDSVNKELK 120

Query: 121 PLGLTCQKKEREYKEVLDLFNEKNKEKSQLVAKLMEVTFFSLPLPKGLYLVNESEKLRMK 180
           PLG TCQ+KEREYKE LD FNEKNKEK+QLV KLME             LV ESEKLRMK
Sbjct: 121 PLGQTCQRKEREYKEALDAFNEKNKEKAQLVTKLME-------------LVTESEKLRMK 176

Query: 181 KLEELSKNIDILH 191
           KLEELSKN+D LH
Sbjct: 181 KLEELSKNVDTLH 176

[Close]

BLAST of Lsi03G001020 vs. NCBI nr
Match: gi|351723169|ref|NP_001238549.1| (uncharacterized protein LOC100499699 [Glycine max])

HSP 1 Score: 226.1 bits (575), Expect = 5.2e-56
Identity = 132/193 (68.39%), Postives = 156/193 (80.83%), Query Frame = 1


Query: 1   MTTQKQSWEAQQSQQ---MQRVKSSGMISSHVNAIGSPLKEDQEEELSRSALALFRAKEE 60
           M T KQS+E QQ QQ   +QRV++SGMI+S+     SP+++D+EEE+SRSALA+FRAKEE
Sbjct: 1   MATPKQSYEQQQQQQQPNVQRVRNSGMINSNQ----SPMRDDKEEEMSRSALAMFRAKEE 60

Query: 61  EIERKKMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELK 120
           EIER+K+E+R+KV A LGR EE TKRLAEIREELEG+TDP+RKEV+ +RKKID VNKELK
Sbjct: 61  EIERRKVEVRDKVHAYLGRVEEETKRLAEIREELEGLTDPLRKEVAIVRKKIDSVNKELK 120

Query: 121 PLGLTCQKKEREYKEVLDLFNEKNKEKSQLVAKLMEVTFFSLPLPKGLYLVNESEKLRMK 180
           PLG TCQ++EREYKE LD FNEKNKEK+QLV KLME             LV ESEKLRMK
Sbjct: 121 PLGQTCQRREREYKEALDAFNEKNKEKAQLVTKLME-------------LVTESEKLRMK 176

Query: 181 KLEELSKNIDILH 191
           KLEELSKN+D LH
Sbjct: 181 KLEELSKNVDTLH 176

The following BLAST results are available for this feature:

BLAST of Lsi03G001020 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi03G001020 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LY59_CUCSA	1.1e-73	87.96	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G153510 PE=4 SV=1	[more]
C6TK18_SOYBN	9.5e-57	69.27	Uncharacterized protein OS=Glycine max GN=GLYMA_11G188000 PE=2 SV=1	[more]
A0A0B2S1V7_GLYSO	9.5e-57	69.27	Uncharacterized protein OS=Glycine soja GN=glysoja_008207 PE=4 SV=1	[more]
A0A0B2QHZ0_GLYSO	1.6e-56	68.91	Uncharacterized protein OS=Glycine soja GN=glysoja_006600 PE=4 SV=1	[more]
I1LRD5_SOYBN	1.6e-56	68.91	Uncharacterized protein OS=Glycine max GN=GLYMA_12G086500 PE=4 SV=1	[more]

BLAST of Lsi03G001020 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G27740.1	3.8e-49	59.57	Family of unknown function (DUF662)	[more]
AT3G09980.1	2.1e-47	68.87	Family of unknown function (DUF662)	[more]
AT2G36410.1	2.2e-44	58.38	Family of unknown function (DUF662)	[more]
AT3G52920.1	3.7e-44	59.36	Family of unknown function (DUF662)	[more]
AT5G03660.1	1.9e-40	57.39	Family of unknown function (DUF662)	[more]

BLAST of Lsi03G001020 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659071754\|ref\|XP_008461743.1\|	5.5e-74	87.43	PREDICTED: RAB6-interacting golgin [Cucumis melo]	[more]
gi\|449443426\|ref\|XP_004139478.1\|	1.6e-73	87.96	PREDICTED: uncharacterized protein LOC101203874 [Cucumis sativus]	[more]
gi\|359807315\|ref\|NP_001241375.1\|	1.4e-56	69.27	uncharacterized protein LOC100796368 [Glycine max]	[more]
gi\|734375883\|gb\|KHN21121.1\|	2.3e-56	68.91	hypothetical protein glysoja_006600 [Glycine soja]	[more]
gi\|351723169\|ref\|NP_001238549.1\|	5.2e-56	68.39	uncharacterized protein LOC100499699 [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007033	GORAB

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0010413	glucuronoxylan metabolic process
biological_process	GO:0045492	xylan biosynthetic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G001020.1	Lsi03G001020.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007033	RAB6-interacting golgin	PFAM	PF04949	Transcrip_act	coord: 27..187 score: 5.5
None	No IPR available	unknown	Coil	Coil	coord: 176..190 score: -coord: 49..90 score: -coord: 123..143 scor
None	No IPR available	PANTHER	PTHR21470	NTKL-BINDING PROTEIN 1	coord: 1..190 score: 9.1
None	No IPR available	PANTHER	PTHR21470:SF4	SUBFAMILY NOT NAMED	coord: 1..190 score: 9.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi03G001020	Csa1G153510	Cucumber (Chinese Long) v2	culsiB044
Lsi03G001020	CSPI01G14440	Wild cucumber (PI 183967)	cpilsiB046
Lsi03G001020	Cucsa.199940	Cucumber (Gy14) v1	cgylsiB343
Lsi03G001020	CmaCh13G002850	Cucurbita maxima (Rimu)	cmalsiB212
Lsi03G001020	CmoCh13G003130	Cucurbita moschata (Rifu)	cmolsiB203
Lsi03G001020	Cla017717	Watermelon (97103) v1	lsiwmB246
Lsi03G001020	Cla003550	Watermelon (97103) v1	lsiwmB260
Lsi03G001020	MELO3C004756	Melon (DHL92) v3.5.1	lsimeB244
Lsi03G001020	ClCG01G012520	Watermelon (Charleston Gray)	lsiwcgB231
Lsi03G001020	MELO3C004756.2	Melon (DHL92) v3.6.1	lsimedB255
Lsi03G001020	Cla97C01G011740	Watermelon (97103) v2	lsiwmbB217
Lsi03G001020	Bhi08G000068	Wax gourd	lsiwgoB337
Lsi03G001020	CsaV3_1G014610	Cucumber (Chinese Long) v3	cuclsiB048

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi03G001020	Watermelon (97103) v2	lsiwmbB227
Lsi03G001020	Bottle gourd (USVL1VR-Ls)	lsilsiB042
Lsi03G001020	Cucurbita maxima (Rimu)	cmalsiB168
Lsi03G001020	Cucurbita moschata (Rifu)	cmolsiB158
Lsi03G001020	Cucurbita pepo (Zucchini)	cpelsiB428
Lsi03G001020	Cucurbita pepo (Zucchini)	cpelsiB429
Lsi03G001020	Watermelon (Charleston Gray)	lsiwcgB234
Lsi03G001020	Watermelon (97103) v1	lsiwmB270
Lsi03G001020	Cucumber (Gy14) v2	cgyblsiB041