Cla97C01G011740 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C01G011740
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	RAB6-interacting golgin (DUF662)
Location	Cla97Chr01 : 23464181 .. 23468612 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGACGACGCAGAAACAGAGCTGGGAAGCGCAACAATCGCAGCAGATGCAGAGGGTGAAAAGCTCGGGGATGATAAGCAGCCATGCGAATGCGATTGGGAGTCCGGTGAAGGAGGATCAAGAGGAGGAGCTTTCTCGATCGGCTTTAGCTCTGTTTAGGGCTAAGGAAGAGGAGATCGAGAGGAAGAAGATGGAGATGAGAGAGAAGGTGGAAGCTCGCCTTGGAAGAGCTGAAGAAGCGACGAAGCGATTGGCGGAGATTCGCGAAGTAAGTGTGGAATCCATTGTTGATGATGGTAATAATGGTTGGTTTTAAGGTTCTTCCATTCATTAAGGTTTGTGAAATTGATAGGAACTTGAAGGAATGACGGATCCGATGAGGAAGGAAGTTTCGTTCATACGGAAGAAGATTGATTTGGTGAACAAAGAGTTGAAGCCATTGGGACTCACTTGCCAAAAGAAGGTCACAATTTCAAACTCGAGATACCCTCTTCAATCAATTTCTCATAATAATAACGATAATGATAATAATAATATATATATATTAAAATACTATTATGGTCTCACTATTTCAAGTAGGAGCATTTGTTGGTTAGATTGGGTTGAAATCCTTTCTCAACCCACTATTCTGATGATAAGTTTCTTCGATTCAAATAACTCTTATTAAATTTGAGTAGATACAAATATAACCACAAACCCAAAATATTTGTAGATATAGCAGAATGTAAAAGAATTTACATATATAACAAAGATTCTACATTTGAACTCTATGAATGATAGACTATATAGTTCGTAGAGTATATGTATATATATATAATTATATCATAACTAAAAGTAATAAGAAGTTCGGATTGGATTGGATTGAGTTATTTTAGGTAAACCATGAATCAACCCAACCCATAAAATTTCTATTTATTTGAACTCAACCCAACATAAATGAGTTTATGACCCAACCCAAACCGTTTTTCAGGTCATTGGATTTTTTGAACACCCCTACTTTGAATTTGTTAAATTTTTATTTTTAATCGTCCAATTTTAATCTCTGAAATTTTAATAAATCTTAAATTTAGTATTTATAATTATTTTATTGCTTTTTTTTAAATAGTATTATTTATTAGCATTTTAACCTTTTTTTTCCATTTAGATTGCATTTGAATTCGTAGGTTTTCAAATTCAACCATTTTATTGTTAGATTTACTTCATTAATTATTTACGAAAATGTCGTTTTAAATTCTAAACTTTAAAAATATGTTGGTTGTAATGTTTGAAATTTCAACATCATTATATTTTGGTCCTAAATTCTTGAAAGAATATTTATCCATGTGTTTGAACTTTCAAATATACAACTTTTCTTAAATTTTTAAACTTTAGTTCAACAACATATTAAGAATGTGAAAATTCAAATCCCTAACATCTCGAAAAAGGTATGTATCTTACCTATTTGAATTATATGCTCACATTTGCAACTTTTAAGTTTTAATATAGCTTGTTTCTATGTTTCATATTTTATATTAATGTATTGAAAACATATTTACATGTGAGGTAGATAGATAACAAATATATTGGGTTGTTAATTTTTTAAAAGCTCATAAATTAATATCAACACTTCTAATGTTCAGATTCAAAGTGTATTTTTTACAATTTATAGTCTAAAATATTTCTTAAAAAAAGTTATAGTCTAAAACTAAAATAAGCTTGAAAATTTAAAAAGTAAATGAAATTTAAAGCTTGTTATTAATATTTATTCATGTGGCAAATAAATAAGCCTCCCCTAATAAAATAGTAATTTATAGTAACGTGATTAAATATGAATGGAATATTTGTTCTATTAATGTTTTTTTTTTTTTCCTACTAAGATTTTAATTTATTATTTGGTCCCTACCAGGAGAGAGAATACAAAGAAGTCCTAGATTTATTTAACGAGAAGAACAAAGAGAAATCTCAATTGGTAGCCAAACTAATGGAGGTGAATTTTACTTCTTTCCTTTCCTTAATTATATTGATTATTCTGTTTTTCACAAAAAAAAAAAAAAAAAAAAAAAGAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGCGTTTAGAAATTCTCATAAAACTCCAAGCATAATTATTATTAAATCCTCTAAAATTATCTTACATAATTCTTAATCAGATTAAGATCCGTTTGGTTTATTTAAGAAAAAAATATTTTTTCAAAAAGGATAATTATTTTAAATGACAAAATTGTTGAAAATATTTACAATTAATAGTAAAATACACCGTCTATCTACAATAAATTGCAATAAATCACGATAGACTACTATCTGTGTCTATCATGACACAGATGATAATCTATCGTGATCTATTGCGGTCTATAGCAGATAGACAGTGAAATTTTGCTATATTTGTAAATATTGTGGTTTCTTTTGCTATATTGGAAAATAGCCTTCAAAAATTTCATTTTTATTTAAATTCTTTTGATAAAAACTATTTAAAATATACTTCAAAATCTATTTGAATAGTTGTCAAATACGTCAATTTTTTCTAAATTAAATTATTTTTTAAATTAAACACTTGAAAATGTATTAAAAAACGTAAGAACCCATTTATGGAAAAAGATTTTCCATAAAAAAAATTTCAAATTTTCCATTTATGTTAAAATTCATTATTTTATTTATTCATTTCATTTAATAAGAAAATCATTTGTCAATAGAAACTTTTTTGGTTTTCCAATTAAAAAAAAAATTAAAAAATAAAAAATAAAAAAACTCCATTAACCTTTCTCATTTCCTCACTTTTTTTTTTTCCAACTGGACAAAAGCCATCTGAAGAGAGAGAAAGTGAGAGAAAGTGATGAAAACAACCTTTCGAATAAAATATCTTTATTTTAAATCAATAATGTATTAAAATTAAATTATCTTAAATGATAAAATTGTTAAAAATATTTATAACTAATAACAAAATACATCGTTTATTTGTGATAGAAGGTGATAGATTGCAATAGACTACTATTTGTATCTATCGTAACACAAATAATAGTTTATCGCAATGTATCGCAGATAGATAGTGAAATTTTATCAATATTTTAATTTATTTTTTTTTGCTATATTTGAAAAGGATCCTAATGCTAATGTTAATGAATAAAGAAAATATTTCTTCTCTTTTTTCTTCTATGGGTATATTTACTTATTTAGGAACTCTTTAAAAAGAACGTGTTGCTACATTGGATGCTCGAACAATATAATAATATCACTATTATGTATATGTTGATATATTTTTGTTTTAATTATAGTATAGAAAATATATTCTTTTTTTATATTAAATATGTATAGAATACATATCTGTTTTTAATGAATATATACCTTCTAAATAAATAAAAAAAATATTTTAAATAACAAAACTGCTGAAAATATTTACAAATAATGACAAAATATTATAATATATTTGTGATAGACTGCGACAAATTACTATCTATGTCTATCATAACACAGATAGACATGTATAGTAGTATATTGCGGTCTATCGCAAATAAATAATAAAAATTTGCTAAATTATAAATATTTTAGATCATTTTTTTACATTTTAAAACGATCTAAATAAATTTAGAGAATAAATTTTTAACTTTTAACTTCATTAAACATCTCAATCAATAGTGAACGAATTATAAAAATCTAAGCCACATAAAATAACTGATGTGATAAAGTACACTTTATGTAAAAACATATTTTAACATATGTTCTACAATTCATTTTAATTGTTTATTTTAAAATTTTGTTTAAGTTTTTCGGAACATTCCTAATTTAATATAATTAATTTTTATTTAATAACATAAAAAGAATGGATTAAATTTAATATTTTTCTGTAAAGAATAAATATAATATGATTGTTTTTAAGTCTTATTTATGCAACTGTCTCATAAGACAAAGATAAATTTATATAGCTAAATTATTAGTTTTTCTATTATTCATTTTTTATAATTAGATTAAAAGTAATGGTTTTAAATAGCAATACTGTTGAAAATATTTTTAGATATATAGTAAAAAGAAAAAATAGCAACAAAAACAAAGAGCTTTTTTTAACTAATTATTTATAAACTACTACCACTTATATATAGACATTGATAGACTATTATCATCTATCACTGTCTATCAGACTATCAATGTCTATTATTAATAGAAAATAATAGATTATTTTTAACCATTTTATTATATTTATAAATAAGTTTGTTAATTCTGTTATATGAAAACAACTAAAAGATTAAGTAAATGATTACAATTATTATCCATTTAAAGTTGAAAAAAAATGGTATGAATGGTAGAGTTGATTACTAACATATTTTTATGGTATATTTGAATAATTTGGTCAGTTGGTGAATGAGAGCGAAAAATTGAGGATGAAGAAGCTGGAAGAGCTGAGCAAGAACATTGACATCCTTCATTAA

mRNA sequence

ATGACGACGACGCAGAAACAGAGCTGGGAAGCGCAACAATCGCAGCAGATGCAGAGGGTGAAAAGCTCGGGGATGATAAGCAGCCATGCGAATGCGATTGGGAGTCCGGTGAAGGAGGATCAAGAGGAGGAGCTTTCTCGATCGGCTTTAGCTCTGTTTAGGGCTAAGGAAGAGGAGATCGAGAGGAAGAAGATGGAGATGAGAGAGAAGGTGGAAGCTCGCCTTGGAAGAGCTGAAGAAGCGACGAAGCGATTGGCGGAGATTCGCGAAGAACTTGAAGGAATGACGGATCCGATGAGGAAGGAAGTTTCGTTCATACGGAAGAAGATTGATTTGGTGAACAAAGAGTTGAAGCCATTGGGACTCACTTGCCAAAAGAAGGAGAGAGAATACAAAGAAGTCCTAGATTTATTTAACGAGAAGAACAAAGAGAAATCTCAATTGGTAGCCAAACTAATGGAGTTGGTGAATGAGAGCGAAAAATTGAGGATGAAGAAGCTGGAAGAGCTGAGCAAGAACATTGACATCCTTCATTAA

Coding sequence (CDS)

ATGACGACGACGCAGAAACAGAGCTGGGAAGCGCAACAATCGCAGCAGATGCAGAGGGTGAAAAGCTCGGGGATGATAAGCAGCCATGCGAATGCGATTGGGAGTCCGGTGAAGGAGGATCAAGAGGAGGAGCTTTCTCGATCGGCTTTAGCTCTGTTTAGGGCTAAGGAAGAGGAGATCGAGAGGAAGAAGATGGAGATGAGAGAGAAGGTGGAAGCTCGCCTTGGAAGAGCTGAAGAAGCGACGAAGCGATTGGCGGAGATTCGCGAAGAACTTGAAGGAATGACGGATCCGATGAGGAAGGAAGTTTCGTTCATACGGAAGAAGATTGATTTGGTGAACAAAGAGTTGAAGCCATTGGGACTCACTTGCCAAAAGAAGGAGAGAGAATACAAAGAAGTCCTAGATTTATTTAACGAGAAGAACAAAGAGAAATCTCAATTGGTAGCCAAACTAATGGAGTTGGTGAATGAGAGCGAAAAATTGAGGATGAAGAAGCTGGAAGAGCTGAGCAAGAACATTGACATCCTTCATTAA

Protein sequence

MTTTQKQSWEAQQSQQMQRVKSSGMISSHANAIGSPVKEDQEEELSRSALALFRAKEEEIERKKMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKPLGLTCQKKEREYKEVLDLFNEKNKEKSQLVAKLMELVNESEKLRMKKLEELSKNIDILH

Homology

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BLAST of Cla97C01G011740 vs. NCBI nr
Match: XP_008461743.1 (PREDICTED: probable DNA double-strand break repair Rad50 ATPase [Cucumis melo])

HSP 1 Score: 287.0 bits (733), Expect = 4.5e-74
Identity = 164/177 (92.66%), Postives = 171/177 (96.61%), Query Frame = 0


Query: 3   TTQKQSWEAQQSQQMQRVKSSGMISSHA-NAIGSPVKEDQEEELSRSALALFRAKEEEIE 62
           TTQKQSWEA   QQMQRVK+SGMISS+  N IGSP+KEDQEEE+SRSALALFRAKEEEIE
Sbjct: 2   TTQKQSWEA---QQMQRVKNSGMISSNVNNGIGSPLKEDQEEEISRSALALFRAKEEEIE 61

Query: 63  RKKMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKPLG 122
           RKKMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKPLG
Sbjct: 62  RKKMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKPLG 121

Query: 123 LTCQKKEREYKEVLDLFNEKNKEKSQLVAKLMELVNESEKLRMKKLEELSKNIDILH 179
           LTCQKKEREYKEVLDLFNEKN+EKSQLV+KLMELVNESEKLRM+KLEELSKNIDILH
Sbjct: 122 LTCQKKEREYKEVLDLFNEKNREKSQLVSKLMELVNESEKLRMRKLEELSKNIDILH 175

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BLAST of Cla97C01G011740 vs. NCBI nr
Match: XP_004139478.1 (PREDICTED: uncharacterized protein LOC101203874 [Cucumis sativus] >KGN64906.1 hypothetical protein Csa_1G153510 [Cucumis sativus])

HSP 1 Score: 285.0 bits (728), Expect = 1.7e-73
Identity = 165/177 (93.22%), Postives = 170/177 (96.05%), Query Frame = 0


Query: 3   TTQKQSWEAQQSQQMQRVKSSGMISSHAN--AIGSPVKEDQEEELSRSALALFRAKEEEI 62
           TTQKQSWEA   QQMQRVK+SGMISS+ N   IGSP+KEDQEEE+SRSALALFRAKEEEI
Sbjct: 2   TTQKQSWEA---QQMQRVKNSGMISSNVNNGIIGSPLKEDQEEEISRSALALFRAKEEEI 61

Query: 63  ERKKMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKPL 122
           ERKKMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKPL
Sbjct: 62  ERKKMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKPL 121

Query: 123 GLTCQKKEREYKEVLDLFNEKNKEKSQLVAKLMELVNESEKLRMKKLEELSKNIDIL 178
           GLTCQKKEREYKEVLDLFNEKNKEKSQLV+KLMELVNESEKLRMKKLEELSKNIDIL
Sbjct: 122 GLTCQKKEREYKEVLDLFNEKNKEKSQLVSKLMELVNESEKLRMKKLEELSKNIDIL 175

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BLAST of Cla97C01G011740 vs. NCBI nr
Match: NP_001241375.1 (uncharacterized protein LOC100796368 [Glycine max] >ACU23258.1 unknown [Glycine max] >KHN38658.1 hypothetical protein glysoja_008207 [Glycine soja] >KRH30497.1 hypothetical protein GLYMA_11G188000 [Glycine max])

HSP 1 Score: 231.9 bits (590), Expect = 1.7e-57
Identity = 132/177 (74.58%), Postives = 156/177 (88.14%), Query Frame = 0


Query: 4   TQKQSWEAQQSQQ--MQRVKSSGMISSHANAIGSPVKEDQEEELSRSALALFRAKEEEIE 63
           T KQS+E QQ QQ  +QRV++SGMI+S+     SP+++D+EEE+SRSALA+FRAKEEEIE
Sbjct: 3   TPKQSYEQQQQQQPNVQRVRNSGMINSNQ----SPMRDDKEEEMSRSALAMFRAKEEEIE 62

Query: 64  RKKMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKPLG 123
           R+KME+R+KV A LGR EE TKRLAEIREELEG+TDP+RKEV+ +RKKID VNKELKPLG
Sbjct: 63  RRKMEVRDKVHAYLGRVEEETKRLAEIREELEGLTDPLRKEVAIVRKKIDSVNKELKPLG 122

Query: 124 LTCQKKEREYKEVLDLFNEKNKEKSQLVAKLMELVNESEKLRMKKLEELSKNIDILH 179
            TCQ+KEREYKE L++FNEKNKEK+QLV KLMELV ESEKLRMKKLEELSKN+D LH
Sbjct: 123 QTCQRKEREYKEALEVFNEKNKEKAQLVTKLMELVTESEKLRMKKLEELSKNLDTLH 175

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BLAST of Cla97C01G011740 vs. NCBI nr
Match: XP_022142637.1 (uncharacterized protein LOC111012700 [Momordica charantia])

HSP 1 Score: 228.4 bits (581), Expect = 1.9e-56
Identity = 137/177 (77.40%), Postives = 144/177 (81.36%), Query Frame = 0


Query: 3   TTQKQSWEAQ-QSQQMQRVKSSGMISSHANAIGSPVKEDQEEELSRSALALFRAKEEEIE 62
           TTQKQSWEAQ Q  QMQRV++SGMI SH NAIGSP+KEDQ+EELSRSA ALFRAKEEEIE
Sbjct: 2   TTQKQSWEAQAQQSQMQRVRNSGMI-SHVNAIGSPLKEDQDEELSRSAFALFRAKEEEIE 61

Query: 63  RKKMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKPLG 122
           RKKMEMR+KVEARLGRAEEATK             DPMRKEVSFI       NKELKPLG
Sbjct: 62  RKKMEMRDKVEARLGRAEEATKXXXXXXXXXXXXADPMRKEVSFIXXXXXXXNKELKPLG 121

Query: 123 LTCQKKEREYKEVLDLFNEKNKEKSQLVAKLMELVNESEKLRMKKLEELSKNIDILH 179
           LTCQKKEREYKEVL+LFNEKN+EKSQLVA       ESEKLRMKKLEELSKNIDILH
Sbjct: 122 LTCQKKEREYKEVLELFNEKNREKSQLVAXXXXXXXESEKLRMKKLEELSKNIDILH 177

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BLAST of Cla97C01G011740 vs. NCBI nr
Match: XP_022731733.1 (uncharacterized protein LOC111286170 [Durio zibethinus])

HSP 1 Score: 224.6 bits (571), Expect = 2.7e-55
Identity = 127/174 (72.99%), Postives = 154/174 (88.51%), Query Frame = 0


Query: 4   TQKQSWEAQQSQQMQRVKSSGMISSHANAIGSPVKEDQEEELSRSALALFRAKEEEIERK 63
           TQKQ WE QQS QMQRVK+SG+ISS+    GSP+K+D+EEE+ +SALALFRAKEEEIERK
Sbjct: 6   TQKQIWEQQQS-QMQRVKNSGIISSN----GSPIKDDKEEEMEKSALALFRAKEEEIERK 65

Query: 64  KMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKPLGLT 123
           KME+R+KV+A +GR EEAT+RLA+IREEL+ + DPMRKE++  RKKID VN+ELKPLG +
Sbjct: 66  KMEVRDKVQAYMGRVEEATRRLADIREELDALIDPMRKEIAIQRKKIDTVNRELKPLGQS 125

Query: 124 CQKKEREYKEVLDLFNEKNKEKSQLVAKLMELVNESEKLRMKKLEELSKNIDIL 178
           CQKKEREYKE L+ FN+KNKEK+QLV+KLMELV+ESE+LRM KLEELSKNI+ L
Sbjct: 126 CQKKEREYKEALEAFNDKNKEKAQLVSKLMELVSESERLRMTKLEELSKNIETL 174

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BLAST of Cla97C01G011740 vs. TrEMBL
Match: tr|A0A1S3CFV6|A0A1S3CFV6_CUCME (probable DNA double-strand break repair Rad50 ATPase OS=Cucumis melo OX=3656 GN=LOC103500274 PE=4 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 3.0e-74
Identity = 164/177 (92.66%), Postives = 171/177 (96.61%), Query Frame = 0


Query: 3   TTQKQSWEAQQSQQMQRVKSSGMISSHA-NAIGSPVKEDQEEELSRSALALFRAKEEEIE 62
           TTQKQSWEA   QQMQRVK+SGMISS+  N IGSP+KEDQEEE+SRSALALFRAKEEEIE
Sbjct: 2   TTQKQSWEA---QQMQRVKNSGMISSNVNNGIGSPLKEDQEEEISRSALALFRAKEEEIE 61

Query: 63  RKKMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKPLG 122
           RKKMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKPLG
Sbjct: 62  RKKMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKPLG 121

Query: 123 LTCQKKEREYKEVLDLFNEKNKEKSQLVAKLMELVNESEKLRMKKLEELSKNIDILH 179
           LTCQKKEREYKEVLDLFNEKN+EKSQLV+KLMELVNESEKLRM+KLEELSKNIDILH
Sbjct: 122 LTCQKKEREYKEVLDLFNEKNREKSQLVSKLMELVNESEKLRMRKLEELSKNIDILH 175

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BLAST of Cla97C01G011740 vs. TrEMBL
Match: tr|A0A0A0LY59|A0A0A0LY59_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G153510 PE=4 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 1.1e-73
Identity = 165/177 (93.22%), Postives = 170/177 (96.05%), Query Frame = 0


Query: 3   TTQKQSWEAQQSQQMQRVKSSGMISSHAN--AIGSPVKEDQEEELSRSALALFRAKEEEI 62
           TTQKQSWEA   QQMQRVK+SGMISS+ N   IGSP+KEDQEEE+SRSALALFRAKEEEI
Sbjct: 2   TTQKQSWEA---QQMQRVKNSGMISSNVNNGIIGSPLKEDQEEEISRSALALFRAKEEEI 61

Query: 63  ERKKMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKPL 122
           ERKKMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKPL
Sbjct: 62  ERKKMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKPL 121

Query: 123 GLTCQKKEREYKEVLDLFNEKNKEKSQLVAKLMELVNESEKLRMKKLEELSKNIDIL 178
           GLTCQKKEREYKEVLDLFNEKNKEKSQLV+KLMELVNESEKLRMKKLEELSKNIDIL
Sbjct: 122 GLTCQKKEREYKEVLDLFNEKNKEKSQLVSKLMELVNESEKLRMKKLEELSKNIDIL 175

[Close]

BLAST of Cla97C01G011740 vs. TrEMBL
Match: tr|C6TK18|C6TK18_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100796368 PE=2 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 1.1e-57
Identity = 132/177 (74.58%), Postives = 156/177 (88.14%), Query Frame = 0


Query: 4   TQKQSWEAQQSQQ--MQRVKSSGMISSHANAIGSPVKEDQEEELSRSALALFRAKEEEIE 63
           T KQS+E QQ QQ  +QRV++SGMI+S+     SP+++D+EEE+SRSALA+FRAKEEEIE
Sbjct: 3   TPKQSYEQQQQQQPNVQRVRNSGMINSNQ----SPMRDDKEEEMSRSALAMFRAKEEEIE 62

Query: 64  RKKMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKPLG 123
           R+KME+R+KV A LGR EE TKRLAEIREELEG+TDP+RKEV+ +RKKID VNKELKPLG
Sbjct: 63  RRKMEVRDKVHAYLGRVEEETKRLAEIREELEGLTDPLRKEVAIVRKKIDSVNKELKPLG 122

Query: 124 LTCQKKEREYKEVLDLFNEKNKEKSQLVAKLMELVNESEKLRMKKLEELSKNIDILH 179
            TCQ+KEREYKE L++FNEKNKEK+QLV KLMELV ESEKLRMKKLEELSKN+D LH
Sbjct: 123 QTCQRKEREYKEALEVFNEKNKEKAQLVTKLMELVTESEKLRMKKLEELSKNLDTLH 175

[Close]

BLAST of Cla97C01G011740 vs. TrEMBL
Match: tr|A0A1R3GHX7|A0A1R3GHX7_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_25713 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 9.0e-55
Identity = 125/174 (71.84%), Postives = 154/174 (88.51%), Query Frame = 0


Query: 4   TQKQSWEAQQSQQMQRVKSSGMISSHANAIGSPVKEDQEEELSRSALALFRAKEEEIERK 63
           T KQ WE QQS QMQRVK+SG++S +    GSP K+D+EEE+++SALALFRAKEEEIERK
Sbjct: 3   TPKQIWEQQQS-QMQRVKNSGIVSCN----GSPTKDDKEEEMAKSALALFRAKEEEIERK 62

Query: 64  KMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKPLGLT 123
           KME+R+KV++ +GR EEAT+RLA+IREEL+ + DPMRK+V+ IRKKID VN+ELKPLG +
Sbjct: 63  KMEVRDKVQSYMGRVEEATRRLADIREELDALIDPMRKDVAIIRKKIDTVNRELKPLGQS 122

Query: 124 CQKKEREYKEVLDLFNEKNKEKSQLVAKLMELVNESEKLRMKKLEELSKNIDIL 178
           CQKKEREY+E L+ FN+KNKEK+QLV+KLMELV+ESEKLRMKKLEELSKNI+ L
Sbjct: 123 CQKKEREYREALEAFNDKNKEKAQLVSKLMELVSESEKLRMKKLEELSKNIETL 171

[Close]

BLAST of Cla97C01G011740 vs. TrEMBL
Match: tr|A0A1R3J2S8|A0A1R3J2S8_9ROSI (Golgin, RAB6-interacting OS=Corchorus olitorius OX=93759 GN=COLO4_19956 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 9.0e-55
Identity = 125/174 (71.84%), Postives = 154/174 (88.51%), Query Frame = 0


Query: 4   TQKQSWEAQQSQQMQRVKSSGMISSHANAIGSPVKEDQEEELSRSALALFRAKEEEIERK 63
           T KQ WE QQS QMQRVK+SG++S +    GSP K+D+EEE+++SALALFRAKEEEIERK
Sbjct: 3   TPKQIWEQQQS-QMQRVKNSGIVSCN----GSPTKDDKEEEMAKSALALFRAKEEEIERK 62

Query: 64  KMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKPLGLT 123
           KME+R+KV++ +GR EEAT+RLA+IREEL+ + DPMRK+V+ IRKKID VN+ELKPLG +
Sbjct: 63  KMEVRDKVQSYMGRVEEATRRLADIREELDALIDPMRKDVAIIRKKIDTVNRELKPLGQS 122

Query: 124 CQKKEREYKEVLDLFNEKNKEKSQLVAKLMELVNESEKLRMKKLEELSKNIDIL 178
           CQKKEREY+E L+ FN+KNKEK+QLV+KLMELV+ESEKLRMKKLEELSKNI+ L
Sbjct: 123 CQKKEREYREALEAFNDKNKEKAQLVSKLMELVSESEKLRMKKLEELSKNIETL 171

[Close]

BLAST of Cla97C01G011740 vs. TAIR10
Match: AT2G27740.1 (Family of unknown function (DUF662) )

HSP 1 Score: 177.9 bits (450), Expect = 5.3e-45
Identity = 106/173 (61.27%), Postives = 137/173 (79.19%), Query Frame = 0


Query: 4   TQKQSWEAQQSQQMQRVKSSGMISSHANAIGSPVKEDQEEELSRSALALFRAKEEEIERK 63
           T +Q  E  QS  +QR+KSSG IS +    GSP+ +++EEELS+SA ALF+AKE+EIER+
Sbjct: 3   TTRQILEQPQSPFIQRIKSSGNISMN----GSPMIDEKEEELSQSAFALFKAKEDEIERR 62

Query: 64  KMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKPLGLT 123
           KME++++V+ +LG AEEAT+RLAEIREELE +TDPMRKE+S           ELKPLG +
Sbjct: 63  KMEVKDRVQKKLGLAEEATRRLAEIREELEALTDPMRKEISAXXXXXXXXXXELKPLGQS 122

Query: 124 CQKKEREYKEVLDLFNEKNKEKSQLVAKLMELVNESEKLRMKKLEELSKNIDI 177
           CQ+KERE+KE L+ +NEKNKEK+  V+KL+ELV ESEKLRM KLEELSK+I+I
Sbjct: 123 CQRKEREFKEALEAYNEKNKEKAIFVSKLVELVTESEKLRMTKLEELSKSIEI 171

[Close]

BLAST of Cla97C01G011740 vs. TAIR10
Match: AT5G03660.1 (Family of unknown function (DUF662) )

HSP 1 Score: 168.3 bits (425), Expect = 4.2e-42
Identity = 100/163 (61.35%), Postives = 127/163 (77.91%), Query Frame = 0


Query: 14  SQQMQRVKSSGMISSHANAIGSPVKEDQEEELSRSALALFRAKEEEIERKKMEMREKVEA 73
           S Q +R+K      S + +  S +K+ +++ELS  AL+ F+AKEEEIE+KKME+RE+V+A
Sbjct: 12  SDQGRRLKDQ---LSESMSFSSQMKK-EDDELSMKALSAFKAKEEEIEKKKMEIRERVQA 71

Query: 74  RLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKPLGLTCQKKEREYKE 133
           +LGR E+ +KRLA IREELEG  DPMRKEV+ +RKKID ++KELKPLG T QKKE EYK+
Sbjct: 72  QLGRVEDESKRLAMIREELEGFADPMRKEVTMVRKKIDSLDKELKPLGNTVQKKETEYKD 131

Query: 134 VLDLFNEKNKEKSQLVAKLMELVNESEKLRMKKLEELSKNIDI 177
            L+ FNEKNKEK +L+ KL EL  ESEK R KKLEELSKNID+
Sbjct: 132 ALEAFNEKNKEKVELITKLQELEGESEKFRFKKLEELSKNIDL 170

[Close]

BLAST of Cla97C01G011740 vs. TAIR10
Match: AT3G52900.1 (Family of unknown function (DUF662) )

HSP 1 Score: 153.3 bits (386), Expect = 1.4e-37
Identity = 83/142 (58.45%), Postives = 115/142 (80.99%), Query Frame = 0


Query: 36  PVKEDQEEELSRSALALFRAKEEEIERKKMEMREKVEARLGRAEEATKRLAEIREELEGM 95
           P+++++EEE+ + A+  F+A+EEEIERKKM ++EKV+ RLG AEEAT+ L +  EELE M
Sbjct: 22  PMEDNEEEEIWKVAVTRFQAREEEIERKKMTVKEKVQQRLGFAEEATRCLTQTLEELEIM 81

Query: 96  TDPMRKEVSFIRKKIDLVNKELKPLGLTCQKKEREYKEVLDLFNEKNKEKSQLVAKLMEL 155
            DPMRKEV  +RKKID+ N+++K L  +CQKKE+EYK+ L+ FNEKNKEK+ LV+ LMEL
Sbjct: 82  GDPMRKEVGMVRKKIDMANRDIKSLAQSCQKKEKEYKDTLEAFNEKNKEKAHLVSMLMEL 141

Query: 156 VNESEKLRMKKLEELSKNIDIL 178
           + ESE+LR+KKLEE++K +  L
Sbjct: 142 LAESERLRIKKLEEINKTVGTL 163

[Close]

BLAST of Cla97C01G011740 vs. TAIR10
Match: AT2G36355.1 (Family of unknown function (DUF662) )

HSP 1 Score: 127.1 bits (318), Expect = 1.1e-29
Identity = 80/156 (51.28%), Postives = 112/156 (71.79%), Query Frame = 0


Query: 22  SSGMISSHANAIGSPVKEDQEEELSRSALALFRAKEEEIERKKMEMREKVEARLGRAEEA 81
           +SG  +S  + I  P++E+QEEE+ R+    F+A+EEEIERKKM +++K++ RLG AEEA
Sbjct: 5   NSGATTSTKSKI--PMEENQEEEIWRN----FQAREEEIERKKMAVKDKIQQRLGFAEEA 64

Query: 82  TKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKPLGLTCQKKEREYKEVLDLFNEK 141
           T+ L +  E LE M DPMRKEV  +RKKI++ N+E+K L  +CQKK          F+EK
Sbjct: 65  TRSLTQTLEGLEIMGDPMRKEVGMVRKKIEMANREIKSLSQSCQKKXXXXXXXXXAFDEK 124

Query: 142 NKEKSQLVAKLMELVNESEKLRMKKLEELSKNIDIL 178
           NKEK+ LV+ LMEL+ ESE++R+KKLEE++K I  L
Sbjct: 125 NKEKAHLVSILMELLAESERVRVKKLEEINKTIGSL 154

[Close]

BLAST of Cla97C01G011740 vs. TAIR10
Match: AT3G09980.1 (Family of unknown function (DUF662) )

HSP 1 Score: 111.3 bits (277), Expect = 6.1e-25
Identity = 71/138 (51.45%), Postives = 87/138 (63.04%), Query Frame = 0


Query: 41  QEEELSRSALALFRAKEEEIERKKMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMR 100
           ++EE+SR+AL+ FRAKEEEIE+KKME+RE+V+A+LGR EE TKRLA IREELEG+ DPMR
Sbjct: 41  EDEEMSRTALSAFRAKEEEIEKKKMEIRERVQAQLGRVEEETKRLALIREELEGLADPMR 100

Query: 101 KEVSFIRKKIDLVNKELKPLGLTCQKKEREYKEVLDLFNEKNKEKSQLVAKLMELVNESE 160
                                                     +EK QL+ +LMELV ESE
Sbjct: 101 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREKVQLITRLMELVGESE 160

Query: 161 KLRMKKLEELSKNIDILH 179
           K+RMKKLEELSKNID +H
Sbjct: 161 KMRMKKLEELSKNIDSIH 178

The following BLAST results are available for this feature:

BLAST of Cla97C01G011740 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008461743.1	4.5e-74	92.66	PREDICTED: probable DNA double-strand break repair Rad50 ATPase [Cucumis melo]	[more]
XP_004139478.1	1.7e-73	93.22	PREDICTED: uncharacterized protein LOC101203874 [Cucumis sativus] >KGN64906.1 hy...	[more]
NP_001241375.1	1.7e-57	74.58	uncharacterized protein LOC100796368 [Glycine max] >ACU23258.1 unknown [Glycine ...	[more]
XP_022142637.1	1.9e-56	77.40	uncharacterized protein LOC111012700 [Momordica charantia]	[more]
XP_022731733.1	2.7e-55	72.99	uncharacterized protein LOC111286170 [Durio zibethinus]	[more]

BLAST of Cla97C01G011740 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CFV6\|A0A1S3CFV6_CUCME	3.0e-74	92.66	probable DNA double-strand break repair Rad50 ATPase OS=Cucumis melo OX=3656 GN=...	[more]
tr\|A0A0A0LY59\|A0A0A0LY59_CUCSA	1.1e-73	93.22	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G153510 PE=4 SV=1	[more]
tr\|C6TK18\|C6TK18_SOYBN	1.1e-57	74.58	Uncharacterized protein OS=Glycine max OX=3847 GN=100796368 PE=2 SV=1	[more]
tr\|A0A1R3GHX7\|A0A1R3GHX7_COCAP	9.0e-55	71.84	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_25713 PE=4 ...	[more]
tr\|A0A1R3J2S8\|A0A1R3J2S8_9ROSI	9.0e-55	71.84	Golgin, RAB6-interacting OS=Corchorus olitorius OX=93759 GN=COLO4_19956 PE=4 SV=...	[more]

BLAST of Cla97C01G011740 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C01G011740 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G27740.1	5.3e-45	61.27	Family of unknown function (DUF662)	[more]
AT5G03660.1	4.2e-42	61.35	Family of unknown function (DUF662)	[more]
AT3G52900.1	1.4e-37	58.45	Family of unknown function (DUF662)	[more]
AT2G36355.1	1.1e-29	51.28	Family of unknown function (DUF662)	[more]
AT3G09980.1	6.1e-25	51.45	Family of unknown function (DUF662)	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007033	GORAB

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0010413	glucuronoxylan metabolic process
biological_process	GO:0045492	xylan biosynthetic process
biological_process	GO:0008033	tRNA processing
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0016740	transferase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C01G011740.1	Cla97C01G011740.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 50..91
None	No IPR available	COILS	Coil	Coil	coord: 124..165
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..46
None	No IPR available	PANTHER	PTHR21470:SF4	SUBFAMILY NOT NAMED	coord: 3..178
IPR007033	RAB6-interacting golgin	PFAM	PF04949	Transcrip_act	coord: 31..175 e-value: 9.6E-71 score: 236.5
IPR007033	RAB6-interacting golgin	PANTHER	PTHR21470	NTKL-BINDING PROTEIN 1	coord: 3..178

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C01G011740	Cla003550	Watermelon (97103) v1	wmwmbB250
Cla97C01G011740	Csa1G153510	Cucumber (Chinese Long) v2	cuwmbB009
Cla97C01G011740	MELO3C004756	Melon (DHL92) v3.5.1	mewmbB143
Cla97C01G011740	ClCG01G012520	Watermelon (Charleston Gray)	wcgwmbB089
Cla97C01G011740	CSPI01G14440	Wild cucumber (PI 183967)	cpiwmbB009
Cla97C01G011740	Cucsa.199940	Cucumber (Gy14) v1	cgywmbB373
Cla97C01G011740	CmoCh06G004570	Cucurbita moschata (Rifu)	cmowmbB811
Cla97C01G011740	CmoCh13G003130	Cucurbita moschata (Rifu)	cmowmbB198
Cla97C01G011740	Lsi03G001020	Bottle gourd (USVL1VR-Ls)	lsiwmbB217
Cla97C01G011740	CsGy1G014370	Cucumber (Gy14) v2	cgybwmbB009
Cla97C01G011740	MELO3C004756.2	Melon (DHL92) v3.6.1	medwmbB132
Cla97C01G011740	CsaV3_1G014610	Cucumber (Chinese Long) v3	cucwmbB008
Cla97C01G011740	Bhi08G000068	Wax gourd	wgowmbB451

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C01G011740	Wild cucumber (PI 183967)	cpiwmbB438
Cla97C01G011740	Bottle gourd (USVL1VR-Ls)	lsiwmbB033
Cla97C01G011740	Bottle gourd (USVL1VR-Ls)	lsiwmbB114
Cla97C01G011740	Watermelon (Charleston Gray)	wcgwmbB131
Cla97C01G011740	Watermelon (97103) v1	wmwmbB243
Cla97C01G011740	Watermelon (97103) v1	wmwmbB309
Cla97C01G011740	Watermelon (97103) v2	wmbwmbB012
Cla97C01G011740	Silver-seed gourd	carwmbB0964
Cla97C01G011740	Cucumber (Gy14) v1	cgywmbB083
Cla97C01G011740	Cucurbita maxima (Rimu)	cmawmbB161
Cla97C01G011740	Cucurbita maxima (Rimu)	cmawmbB215
Cla97C01G011740	Cucurbita maxima (Rimu)	cmawmbB602
Cla97C01G011740	Cucurbita moschata (Rifu)	cmowmbB145
Cla97C01G011740	Cucurbita moschata (Rifu)	cmowmbB578