Bhi08G000068 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi08G000068
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	RAB6-interacting golgin (DUF662)
Location	chr8 : 2942564 .. 2947502 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AACATGTAAACCAAATATATATCTATTGGGAATACGATTTTAAAAAATAGAAAACTCTTCTGAAAACAGGAGGAATGCAAAGAAGGGTTTGGTGACAGATTCCTTACAAGGTGCTAACAAACAAAGGTCTTAATAAAAAAGGAAAAGGTGAGAGATCTCTCTTGCAAGTAAGCAAAGAAATAATAATAATAATAATAATAATAATAATGGGACAAAAAGAGAAGCAGGCTTTATGCTTATGCAGTTCTGTTGTAACCCATCTCTCCAACTCAGTCTTGGTTCTTAAGGCTTTTTCCCCTATATTCATTTCATACTCAGTGCAGGTAACACCTTACTCTCCACTCCATTACAAAACTTACATCCCAAGCACCTGCAATTCAATTCCTAGAAAACCCCCAAAAGTCATTCCCAAGATTCCACTTCTTTGACCCAAAGCAAAAGTGAACTCTCCATCACAATTTGGTAACTCAATTTCATTTTCAAATGACAGAGACAAAAGCAAGTACATACATGTATATAAATTTCCAAACACAAGATGTAAATTCAGGTCTAATCAATTAGGCGTTTGAGTAAAGATAAGTGCATTTTTGGTTCCAAAATTTCACAACAAAAGCAGAGCAGCAGAATCCACAGGTGAAATCTCTCTATTGGTAGACAATTACGTCAGATTCACGAAGGGAAAAGGATGTCTGTTGAGAAGTAATAAGGTTACATACATACCTTTAAAGCCATTGCGGCGCCTAGGGTTTGGCCACCTAACGGAGAAAGAGAATAATCATCATTTGTGAGAGAGATTGAGGATGACGACGCCGAAACAGAGCTGGGAAGCGCAACAATCGCAGCAAATGCAGAGAGTGAAGAACTCGGGGGTGATGATAAGCAGCAATGTGAATGCGATTGGGAGTCCGGTGAAGGAAGATCAAGAGGAGGAGATCTCGCGATCGGCGTTGGCTGTGTTTAGGGCTAAGGAAGAGGAAATCGAGAGGAAGAAGATGGAAATGAGGGAGAAGGTGGAAGCTCGGCTTGGAAGAGCTGAAGAAGCTACGAAGCGATTGGCGGAGATTCGTGAAGTAAGTGTTGAATCCGCCATTGATGACTGTAAGAATGGTTGGTATTTTGAGATTCTGTTGATCTAGGGTTTGTGAAATTGATAGGAACTTGAAGGAATGACGGATCCGATGAGGAAGGAAGTTTCGTTCATAAGGAAGAAGATTGATTTGGTGAACAAAGAGTTGAAGCCATTGGGACTCACTTGCCAAAAGAAGGTCACAATTTAAAAAATTAAGCTTATTTCTCCTCATTCTTTGTAAGGATAAATTCTTAACCAAATTCAATAAACGAAAATAAGTATTTTAAAAACAATTTTTTTTTTTTAGTTTTTGGATTTTAACTTGATTTTTTAAACGATCGGTAAAAAATAGATAACAAAGAAAATATTTTAAAAGTAGAAGTAATATTTATAAGCTTAATTTTAAAAAACAAAGATTCAAATGATTACCAAACAGACTTATTTTTTGTTTTTATTTTTGAAAATTAAGTTTGTTATCTACTTCGAACCAATGTTTCTAGAAACAAATCAAATTTTGGGAAAAAAAATAACTTTTGAAAACTTGTTTTTGTTTTTTGAAATTTGTCTAACAAGAATTTAACCCTCACACTTAAAACAATGTAAACCATGATAAATAAATGAGAGGAAATGATTTAATTTTCAAAAACAAAAAACAAAAAACGAAGGCCCATTGATAACCTCTGGTTTTTTTGTTTTTGTTTTCCAAAATTAAGTCTATAAACACTACTTTCACCGTCAAATTTCTTCTTTTGTAAATCTACTTTTTACCATTCAGACAAATTTTGAAAATTAAAAAAAAAAGTAGCTTTTAAAAACTTATTTTTGTTTTTGAAATTTGGCTATGAATTCAACCATTGTACTCAAGAAATATGCAAATCATTGCAAGAAATGACAAAAAAAATACGCTTAATTTTAAAAAACGAAATGGTTATCAAACAAGACCCAAACGGTTACTAAATGAGACCTTATTTTATTTTATTTTAGAAAAGTTATGCATGTTCTAATTTTATCATTTCGTCCTATATTAGTTCCTCCATCAAATTTTTCATTAATTACTAATGGAAATAAGAGTGTTTAGAAACTATCAAACTTTGAAAACATACATCTTTTCTTCCATTATAGAACTTTGCTCTCTATTTGGGTTCAAAAAAGTTTAAGAAACCATTTCCAATCCTATGATTTGAAACTCGATAAATGAATTTAAATTAATTACTTTGTTTGGAATGAAAAAGATTTGAAATAAATGTATTTAAAATTTTGTATTTAGATAGTAACTAAAAAAAGAAAAGAAAGTTTAGAATTTATTAATACAACTTTTAGCTATGATGTGTTAATTGAAGATTAGAATATGAGATCAAGTAATTTACTTTTAAATCCAAATATACTTTTTAAGTAAAATAAGATTTGAAATCACTTCGAAATTTAAAACCATTCTCCTTCGTATCGTAACAAACAACAATATTCATTTGAAATCTATTATGAATTAAAATTCCTCGTAAAGTCCCAAAGTTTCAAATAGACCTATAAAAATATGAAAATCCAAATCAATCACGGCTTAAAAAAGGATATATCTCAACCTTAAACTATATGCTATAATAACAAATTTTGAGTTATTATTATTTTTTAAACGCTAATAGTTTATGATTTTTTTTCCTTTGGTTGAAACTTGAAGGTAATGTTGCATAATTAATATTTTCTATGTATTTGGCCCCTACCAGGAGAGAGAATACAAGGAAGTCCTAGATTTATTTAACGAGAAGAACAAAGAGAAATCCCAATTGGTAGCCAAACTAATGGAGGTGACACCCTTTTTTTTCTCCCATAAGGGCTTATATTTTTCAAAGTTTAATTCATGTCTTTTAATCTTTAATTTCTAGATTATTATCAAAAAATAATTTTAATTATAAACTTCTATAGATAGTCTTTAAATGAGTCCTAATTTTCATTTATGTCCATAGTTATCATAATTTTCATAAACGTACCAGTATAGTTCATTATTTTAAGAAATTTTCACTGATAGAAAAATGTCAAATTATTTATAGAAATAGCAAAGAAAAAAAAAAAGAATACGGATAGACGTTGTATGGACTTCTATCTTATAAAAAAAAAAATTAAATTTTTTATTTCATGTAAATAGTTTATCTTTTTTTATATATTTAAAAATCTTCCTATTATTAAATCATCTAAACTATCTTACAAAAATGATAATTATAATAAGATGAAGAAAACCCATATGAGGAAAATGGAATCGTTTTCAAAATTATTTCCAATTTGTCATTTCTGGAAAAGTTCATTATTGATTTAAATATTACTGTGTTATTGTATTTTTTTTATTTAGTTTATTTTAGTTGTTGTATTTTCAAAATATTCATCTTGATCCCTAAACTTTAATATTAGTTCACTTTGGTCTTTGTACTCTCATAATATTTATTGTGGTCTTTGTACTTTCAACTTTAATTCATTTTAATTCTTAAACTTTTAAGAAGTGACCATTTTGATCTTTTTAAAATGCAATAAAAATGAAAATAAATGGATTAAAAAGTCACTTTTTGAAAGTACAAGACCAAAATTAATATAGTCGAAGTATAGGAACTAAAATGAATATTTTAAAAATATGAAAACCAAAATGAACTAAAATCAAAAGTATGGGGACTAAAATAGTATTTAAATCTTCATTATTTTATCTATTCAATTTAGTTAGAAAAGAAATCATTTATTGAAAGAAACGTTTGGTTTTCCAATTTTTTTCTATGGATATATTTAAGGAACTCTTTATAAGATGTGTTGCTATTAAATGCTCGAACAATATAACAGTATGCATATGTTGAAATATTTTTATTTTAATTGTAGTATGAAAAATATTTTCTTTATCTATATTTATTAAGGATAATCACTTTATAGTGTAACATTTATTTAAAAATTCTAGCATGGATGTGATGTAATTTTATTTTTATATATTTATTTATTTATTTTTAGAATGTACAAACATATTTTAACATATGTTATACAATTTATTTCATTTTTATTTTAAAATTTCGATTAAGTTTGTAAAACATTTTTTTTAAACATAAAAAGAATGGAATGAATTCAGTATTTCTTTTAGTAAAGAATAAATCCCAAACCATCGTGATTATTGACATGCATTCTCTCCGTCAAAGTCCAAGGTTTCTAACTATTTGAAAAATTTATATAACAAAGTTATTAATTTTTTTATTATTTAAATCTTAACAATTTAGTTTAATGGCATTATTTCCACATGTAAAACTGTTAAAAATATTTAAAAAGATATAGCACAATTTTAGAACTATCAAGGATAGATACAGATAGACTTCTATTAGTGTCTAGCGTATATCATTGATAGTTCTAAAATTTTGCTACATTTTATAAATATTTTAGTTTATTTTTCTATATTTAAAAACGGTCCTAAAAGAAAATGGTATGAGATCTTAGACTTGATTGCTAACATATTTGATTGTATATTTGAATAATTTGGTCAGTTGGTGAATGAGAGCGAAAAATTGAGGATGAAGAAACTGGAAGAGCTGAGCAAGAACATTGACATCCTTCATTAAGAAAAATGTTCTAAGTTCTAACTCAAATTAATCACCAACTTTGTTTGTATTTCCACATATTGTTTCTCCTTGATTCTCATTACATTTTTTTTCTTAAATTTCCCATGAGAAAGAAAAGAGAGGAAGGAGGAAAAAAAAAGGAAATTTAACTTTGCTTGTATTAATAAGTTTCACAACCATATGAGTGTAGTGTGATCCATGTTTGACAATGATTTTCTCATTTCATGTTGCAATTTCTTTTCTTTACTCAAAACTTTTCTGAATAATTGAAGAGAGGTAATTTACTTGTTAGCTTAAA

mRNA sequence

AACATGTAAACCAAATATATATCTATTGGGAATACGATTTTAAAAAATAGAAAACTCTTCTGAAAACAGGAGGAATGCAAAGAAGGGTTTGGTGACAGATTCCTTACAAGGTGCTAACAAACAAAGGTCTTAATAAAAAAGGAAAAGGTGAGAGATCTCTCTTGCAAGTAAGCAAAGAAATAATAATAATAATAATAATAATAATAATGGGACAAAAAGAGAAGCAGGCTTTATGCTTATGCAGTTCTGTTGTAACCCATCTCTCCAACTCAGTCTTGGTTCTTAAGGCTTTTTCCCCTATATTCATTTCATACTCAGTGCAGGTAACACCTTACTCTCCACTCCATTACAAAACTTACATCCCAAGCACCTGCAATTCAATTCCTAGAAAACCCCCAAAAGTCATTCCCAAGATTCCACTTCTTTGACCCAAAGCAAAAGTGAACTCTCCATCACAATTTGGTAACTCAATTTCATTTTCAAATGACAGAGACAAAAGCAAGTACATACATGTATATAAATTTCCAAACACAAGATGTAAATTCAGGTCTAATCAATTAGGCGTTTGAGTAAAGATAAGTGCATTTTTGGTTCCAAAATTTCACAACAAAAGCAGAGCAGCAGAATCCACAGGTGAAATCTCTCTATTGGTAGACAATTACGTCAGATTCACGAAGGGAAAAGGATGTCTGTTGAGAAGTAATAAGGTTACATACATACCTTTAAAGCCATTGCGGCGCCTAGGGTTTGGCCACCTAACGGAGAAAGAGAATAATCATCATTTGTGAGAGAGATTGAGGATGACGACGCCGAAACAGAGCTGGGAAGCGCAACAATCGCAGCAAATGCAGAGAGTGAAGAACTCGGGGGTGATGATAAGCAGCAATGTGAATGCGATTGGGAGTCCGGTGAAGGAAGATCAAGAGGAGGAGATCTCGCGATCGGCGTTGGCTGTGTTTAGGGCTAAGGAAGAGGAAATCGAGAGGAAGAAGATGGAAATGAGGGAGAAGGTGGAAGCTCGGCTTGGAAGAGCTGAAGAAGCTACGAAGCGATTGGCGGAGATTCGTGAAGAACTTGAAGGAATGACGGATCCGATGAGGAAGGAAGTTTCGTTCATAAGGAAGAAGATTGATTTGGTGAACAAAGAGTTGAAGCCATTGGGACTCACTTGCCAAAAGAAGGAGAGAGAATACAAGGAAGTCCTAGATTTATTTAACGAGAAGAACAAAGAGAAATCCCAATTGGTAGCCAAACTAATGGAGTTGGTGAATGAGAGCGAAAAATTGAGGATGAAGAAACTGGAAGAGCTGAGCAAGAACATTGACATCCTTCATTAAGAAAAATGTTCTAAGTTCTAACTCAAATTAATCACCAACTTTGTTTGTATTTCCACATATTGTTTCTCCTTGATTCTCATTACATTTTTTTTCTTAAATTTCCCATGAGAAAGAAAAGAGAGGAAGGAGGAAAAAAAAAGGAAATTTAACTTTGCTTGTATTAATAAGTTTCACAACCATATGAGTGTAGTGTGATCCATGTTTGACAATGATTTTCTCATTTCATGTTGCAATTTCTTTTCTTTACTCAAAACTTTTCTGAATAATTGAAGAGAGGTAATTTACTTGTTAGCTTAAA

Coding sequence (CDS)

ATGACGACGCCGAAACAGAGCTGGGAAGCGCAACAATCGCAGCAAATGCAGAGAGTGAAGAACTCGGGGGTGATGATAAGCAGCAATGTGAATGCGATTGGGAGTCCGGTGAAGGAAGATCAAGAGGAGGAGATCTCGCGATCGGCGTTGGCTGTGTTTAGGGCTAAGGAAGAGGAAATCGAGAGGAAGAAGATGGAAATGAGGGAGAAGGTGGAAGCTCGGCTTGGAAGAGCTGAAGAAGCTACGAAGCGATTGGCGGAGATTCGTGAAGAACTTGAAGGAATGACGGATCCGATGAGGAAGGAAGTTTCGTTCATAAGGAAGAAGATTGATTTGGTGAACAAAGAGTTGAAGCCATTGGGACTCACTTGCCAAAAGAAGGAGAGAGAATACAAGGAAGTCCTAGATTTATTTAACGAGAAGAACAAAGAGAAATCCCAATTGGTAGCCAAACTAATGGAGTTGGTGAATGAGAGCGAAAAATTGAGGATGAAGAAACTGGAAGAGCTGAGCAAGAACATTGACATCCTTCATTAA

Protein sequence

MTTPKQSWEAQQSQQMQRVKNSGVMISSNVNAIGSPVKEDQEEEISRSALAVFRAKEEEIERKKMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKPLGLTCQKKEREYKEVLDLFNEKNKEKSQLVAKLMELVNESEKLRMKKLEELSKNIDILH

Homology

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BLAST of Bhi08G000068 vs. TAIR10
Match: AT2G27740.1 (Family of unknown function (DUF662) )

HSP 1 Score: 171.0 bits (432), Expect = 6.5e-43
Identity = 99/176 (56.25%), Postives = 134/176 (76.14%), Query Frame = 0


Query: 1   MTTPKQSWEAQQSQQMQRVKNSGVMISSNVNAIGSPVKEDQEEEISRSALAVFRAKEEEI 60
           M T +Q  E  QS  +QR+K+SG     N++  GSP+ +++EEE+S+SA A+F+AKE+EI
Sbjct: 1   MATTRQILEQPQSPFIQRIKSSG-----NISMNGSPMIDEKEEELSQSAFALFKAKEDEI 60

Query: 61  ERKKMEMREKVEARLGRAEEATKRLXXXXEELEGMTDPMRKEVSFIRKKIDLVNKELKPL 120
           ER+KME++++V+ +LG AEEAT+RL    EELE +TDPMRKE+S           ELKPL
Sbjct: 61  ERRKMEVKDRVQKKLGLAEEATRRLAEIREELEALTDPMRKEISAXXXXXXXXXXELKPL 120

Query: 121 GLTCQKKEREYKEVLDLFNEKNKEKSQLVAKLMELVNESEKLRMKKLEELSKNIDI 177
           G +CQ+KERE+KE L+ +NEKNKEK+  V+KL+ELV ESEKLRM KLEELSK+I+I
Sbjct: 121 GQSCQRKEREFKEALEAYNEKNKEKAIFVSKLVELVTESEKLRMTKLEELSKSIEI 171

[Close]

BLAST of Bhi08G000068 vs. TAIR10
Match: AT5G03660.1 (Family of unknown function (DUF662) )

HSP 1 Score: 165.6 bits (418), Expect = 2.7e-41
Identity = 98/173 (56.65%), Postives = 128/173 (73.99%), Query Frame = 0


Query: 4   PKQSWEAQQSQQMQRVKNSGVMISSNVNAIGSPVKEDQEEEISRSALAVFRAKEEEIERK 63
           P ++ +   S Q +R+K+    +S +++      KED  +E+S  AL+ F+AKEEEIE+K
Sbjct: 3   PTETSQPAPSDQGRRLKD---QLSESMSFSSQMKKED--DELSMKALSAFKAKEEEIEKK 62

Query: 64  KMEMREKVEARLGRAEEATKRLXXXXEELEGMTDPMRKEVSFIRKKIDLVNKELKPLGLT 123
           KME+RE+V+A+LGR E+ +KRL    EELEG  DPMRKEV+ +RKKID ++KELKPLG T
Sbjct: 63  KMEIRERVQAQLGRVEDESKRLAMIREELEGFADPMRKEVTMVRKKIDSLDKELKPLGNT 122

Query: 124 CQKKEREYKEVLDLFNEKNKEKSQLVAKLMELVNESEKLRMKKLEELSKNIDI 177
            QKKE EYK+ L+ FNEKNKEK +L+ KL EL  ESEK R KKLEELSKNID+
Sbjct: 123 VQKKETEYKDALEAFNEKNKEKVELITKLQELEGESEKFRFKKLEELSKNIDL 170

[Close]

BLAST of Bhi08G000068 vs. TAIR10
Match: AT3G52900.1 (Family of unknown function (DUF662) )

HSP 1 Score: 159.8 bits (403), Expect = 1.5e-39
Identity = 92/163 (56.44%), Postives = 122/163 (74.85%), Query Frame = 0


Query: 16  MQRVKNSGVMISSNVNAIGS-PVKEDQEEEISRSALAVFRAKEEEIERKKMEMREKVEAR 75
           M    NSG    S VN  G  P+++++EEEI + A+  F+A+EEEIERKKM ++EKV+ R
Sbjct: 1   MSSKNNSGAAAVSGVNTNGKLPMEDNEEEEIWKVAVTRFQAREEEIERKKMTVKEKVQQR 60

Query: 76  LGRAEEATKRLXXXXEELEGMTDPMRKEVSFIRKKIDLVNKELKPLGLTCQKKEREYKEV 135
           LG AEEAT+ L    EELE M DPMRKEV  +RKKID+ N+++K L  +CQKKE+EYK+ 
Sbjct: 61  LGFAEEATRCLTQTLEELEIMGDPMRKEVGMVRKKIDMANRDIKSLAQSCQKKEKEYKDT 120

Query: 136 LDLFNEKNKEKSQLVAKLMELVNESEKLRMKKLEELSKNIDIL 178
           L+ FNEKNKEK+ LV+ LMEL+ ESE+LR+KKLEE++K +  L
Sbjct: 121 LEAFNEKNKEKAHLVSMLMELLAESERLRIKKLEEINKTVGTL 163

[Close]

BLAST of Bhi08G000068 vs. TAIR10
Match: AT2G36355.1 (Family of unknown function (DUF662) )

HSP 1 Score: 127.9 bits (320), Expect = 6.3e-30
Identity = 81/157 (51.59%), Postives = 109/157 (69.43%), Query Frame = 0


Query: 21  NSGVMISSNVNAIGSPVKEDQEEEISRSALAVFRAKEEEIERKKMEMREKVEARLGRAEE 80
           NSG   S+       P++E+QEEEI R+    F+A+EEEIERKKM +++K++ RLG AEE
Sbjct: 5   NSGATTSTKSKI---PMEENQEEEIWRN----FQAREEEIERKKMAVKDKIQQRLGFAEE 64

Query: 81  ATKRLXXXXEELEGMTDPMRKEVSFIRKKIDLVNKELKPLGLTCQKKEREYKEVLDLFNE 140
           AT+ L    E LE M DPMRKEV  +RKKI++ N+E+K L  +CQKK          F+E
Sbjct: 65  ATRSLTQTLEGLEIMGDPMRKEVGMVRKKIEMANREIKSLSQSCQKKXXXXXXXXXAFDE 124

Query: 141 KNKEKSQLVAKLMELVNESEKLRMKKLEELSKNIDIL 178
           KNKEK+ LV+ LMEL+ ESE++R+KKLEE++K I  L
Sbjct: 125 KNKEKAHLVSILMELLAESERVRVKKLEEINKTIGSL 154

[Close]

BLAST of Bhi08G000068 vs. TAIR10
Match: AT3G09980.1 (Family of unknown function (DUF662) )

HSP 1 Score: 109.0 bits (271), Expect = 3.1e-24
Identity = 73/156 (46.79%), Postives = 91/156 (58.33%), Query Frame = 0


Query: 23  GVMISSNVNAIGSPVKEDQEEEISRSALAVFRAKEEEIERKKMEMREKVEARLGRAEEAT 82
           G  +S +++      KED  EE+SR+AL+ FRAKEEEIE+KKME+RE+V+A+LGR EE T
Sbjct: 25  GAQLSGSMSFSSQMSKED--EEMSRTALSAFRAKEEEIEKKKMEIRERVQAQLGRVEEET 84

Query: 83  KRLXXXXEELEGMTDPMRKEVSFIRKKIDLVNKELKPLGLTCQKKEREYKEVLDLFNEKN 142
           KRL    EELEG+ DPMR                                          
Sbjct: 85  KRLALIREELEGLADPMRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 144

Query: 143 KEKSQLVAKLMELVNESEKLRMKKLEELSKNIDILH 179
           +EK QL+ +LMELV ESEK+RMKKLEELSKNID +H
Sbjct: 145 REKVQLITRLMELVGESEKMRMKKLEELSKNIDSIH 178

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BLAST of Bhi08G000068 vs. TrEMBL
Match: tr|A0A1S3CFV6|A0A1S3CFV6_CUCME (probable DNA double-strand break repair Rad50 ATPase OS=Cucumis melo OX=3656 GN=LOC103500274 PE=4 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 1.6e-72
Identity = 163/179 (91.06%), Postives = 168/179 (93.85%), Query Frame = 0


Query: 1   MTTPKQSWEAQQSQQMQRVKNSGVMISSNV-NAIGSPVKEDQEEEISRSALAVFRAKEEE 60
           MTT KQSWEA   QQMQRVKNSG MISSNV N IGSP+KEDQEEEISRSALA+FRAKEEE
Sbjct: 1   MTTQKQSWEA---QQMQRVKNSG-MISSNVNNGIGSPLKEDQEEEISRSALALFRAKEEE 60

Query: 61  IERKKMEMREKVEARLGRAEEATKRLXXXXEELEGMTDPMRKEVSFIRKKIDLVNKELKP 120
           IERKKMEMREKVEARLGRAEEATKRL    EELEGMTDPMRKEVSFIRKKIDLVNKELKP
Sbjct: 61  IERKKMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKP 120

Query: 121 LGLTCQKKEREYKEVLDLFNEKNKEKSQLVAKLMELVNESEKLRMKKLEELSKNIDILH 179
           LGLTCQKKEREYKEVLDLFNEKN+EKSQLV+KLMELVNESEKLRM+KLEELSKNIDILH
Sbjct: 121 LGLTCQKKEREYKEVLDLFNEKNREKSQLVSKLMELVNESEKLRMRKLEELSKNIDILH 175

[Close]

BLAST of Bhi08G000068 vs. TrEMBL
Match: tr|A0A0A0LY59|A0A0A0LY59_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G153510 PE=4 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 4.8e-72
Identity = 164/179 (91.62%), Postives = 167/179 (93.30%), Query Frame = 0


Query: 1   MTTPKQSWEAQQSQQMQRVKNSGVMISSNVN--AIGSPVKEDQEEEISRSALAVFRAKEE 60
           MTT KQSWEA   QQMQRVKNSG MISSNVN   IGSP+KEDQEEEISRSALA+FRAKEE
Sbjct: 1   MTTQKQSWEA---QQMQRVKNSG-MISSNVNNGIIGSPLKEDQEEEISRSALALFRAKEE 60

Query: 61  EIERKKMEMREKVEARLGRAEEATKRLXXXXEELEGMTDPMRKEVSFIRKKIDLVNKELK 120
           EIERKKMEMREKVEARLGRAEEATKRL    EELEGMTDPMRKEVSFIRKKIDLVNKELK
Sbjct: 61  EIERKKMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELK 120

Query: 121 PLGLTCQKKEREYKEVLDLFNEKNKEKSQLVAKLMELVNESEKLRMKKLEELSKNIDIL 178
           PLGLTCQKKEREYKEVLDLFNEKNKEKSQLV+KLMELVNESEKLRMKKLEELSKNIDIL
Sbjct: 121 PLGLTCQKKEREYKEVLDLFNEKNKEKSQLVSKLMELVNESEKLRMKKLEELSKNIDIL 175

[Close]

BLAST of Bhi08G000068 vs. TrEMBL
Match: tr|C6TK18|C6TK18_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100796368 PE=2 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 5.7e-57
Identity = 132/180 (73.33%), Postives = 154/180 (85.56%), Query Frame = 0


Query: 1   MTTPKQSWEAQQSQQ--MQRVKNSGVMISSNVNAIGSPVKEDQEEEISRSALAVFRAKEE 60
           M TPKQS+E QQ QQ  +QRV+NSG MI+SN     SP+++D+EEE+SRSALA+FRAKEE
Sbjct: 1   MATPKQSYEQQQQQQPNVQRVRNSG-MINSN----QSPMRDDKEEEMSRSALAMFRAKEE 60

Query: 61  EIERKKMEMREKVEARLGRAEEATKRLXXXXEELEGMTDPMRKEVSFIRKKIDLVNKELK 120
           EIER+KME+R+KV A LGR EE TKRL    EELEG+TDP+RKEV+ +RKKID VNKELK
Sbjct: 61  EIERRKMEVRDKVHAYLGRVEEETKRLAEIREELEGLTDPLRKEVAIVRKKIDSVNKELK 120

Query: 121 PLGLTCQKKEREYKEVLDLFNEKNKEKSQLVAKLMELVNESEKLRMKKLEELSKNIDILH 179
           PLG TCQ+KEREYKE L++FNEKNKEK+QLV KLMELV ESEKLRMKKLEELSKN+D LH
Sbjct: 121 PLGQTCQRKEREYKEALEVFNEKNKEKAQLVTKLMELVTESEKLRMKKLEELSKNLDTLH 175

[Close]

BLAST of Bhi08G000068 vs. TrEMBL
Match: tr|A0A1R3GHX7|A0A1R3GHX7_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_25713 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 9.0e-55
Identity = 124/177 (70.06%), Postives = 151/177 (85.31%), Query Frame = 0


Query: 1   MTTPKQSWEAQQSQQMQRVKNSGVMISSNVNAIGSPVKEDQEEEISRSALAVFRAKEEEI 60
           M TPKQ WE QQS QMQRVKNSG+     V+  GSP K+D+EEE+++SALA+FRAKEEEI
Sbjct: 1   MATPKQIWEQQQS-QMQRVKNSGI-----VSCNGSPTKDDKEEEMAKSALALFRAKEEEI 60

Query: 61  ERKKMEMREKVEARLGRAEEATKRLXXXXEELEGMTDPMRKEVSFIRKKIDLVNKELKPL 120
           ERKKME+R+KV++ +GR EEAT+RL    EEL+ + DPMRK+V+ IRKKID VN+ELKPL
Sbjct: 61  ERKKMEVRDKVQSYMGRVEEATRRLADIREELDALIDPMRKDVAIIRKKIDTVNRELKPL 120

Query: 121 GLTCQKKEREYKEVLDLFNEKNKEKSQLVAKLMELVNESEKLRMKKLEELSKNIDIL 178
           G +CQKKEREY+E L+ FN+KNKEK+QLV+KLMELV+ESEKLRMKKLEELSKNI+ L
Sbjct: 121 GQSCQKKEREYREALEAFNDKNKEKAQLVSKLMELVSESEKLRMKKLEELSKNIETL 171

[Close]

BLAST of Bhi08G000068 vs. TrEMBL
Match: tr|A0A1R3J2S8|A0A1R3J2S8_9ROSI (Golgin, RAB6-interacting OS=Corchorus olitorius OX=93759 GN=COLO4_19956 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 9.0e-55
Identity = 124/177 (70.06%), Postives = 151/177 (85.31%), Query Frame = 0


Query: 1   MTTPKQSWEAQQSQQMQRVKNSGVMISSNVNAIGSPVKEDQEEEISRSALAVFRAKEEEI 60
           M TPKQ WE QQS QMQRVKNSG+     V+  GSP K+D+EEE+++SALA+FRAKEEEI
Sbjct: 1   MATPKQIWEQQQS-QMQRVKNSGI-----VSCNGSPTKDDKEEEMAKSALALFRAKEEEI 60

Query: 61  ERKKMEMREKVEARLGRAEEATKRLXXXXEELEGMTDPMRKEVSFIRKKIDLVNKELKPL 120
           ERKKME+R+KV++ +GR EEAT+RL    EEL+ + DPMRK+V+ IRKKID VN+ELKPL
Sbjct: 61  ERKKMEVRDKVQSYMGRVEEATRRLADIREELDALIDPMRKDVAIIRKKIDTVNRELKPL 120

Query: 121 GLTCQKKEREYKEVLDLFNEKNKEKSQLVAKLMELVNESEKLRMKKLEELSKNIDIL 178
           G +CQKKEREY+E L+ FN+KNKEK+QLV+KLMELV+ESEKLRMKKLEELSKNI+ L
Sbjct: 121 GQSCQKKEREYREALEAFNDKNKEKAQLVSKLMELVSESEKLRMKKLEELSKNIETL 171

[Close]

BLAST of Bhi08G000068 vs. NCBI nr
Match: XP_008461743.1 (PREDICTED: probable DNA double-strand break repair Rad50 ATPase [Cucumis melo])

HSP 1 Score: 281.2 bits (718), Expect = 2.5e-72
Identity = 163/179 (91.06%), Postives = 168/179 (93.85%), Query Frame = 0


Query: 1   MTTPKQSWEAQQSQQMQRVKNSGVMISSNV-NAIGSPVKEDQEEEISRSALAVFRAKEEE 60
           MTT KQSWEA   QQMQRVKNSG MISSNV N IGSP+KEDQEEEISRSALA+FRAKEEE
Sbjct: 1   MTTQKQSWEA---QQMQRVKNSG-MISSNVNNGIGSPLKEDQEEEISRSALALFRAKEEE 60

Query: 61  IERKKMEMREKVEARLGRAEEATKRLXXXXEELEGMTDPMRKEVSFIRKKIDLVNKELKP 120
           IERKKMEMREKVEARLGRAEEATKRL    EELEGMTDPMRKEVSFIRKKIDLVNKELKP
Sbjct: 61  IERKKMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKP 120

Query: 121 LGLTCQKKEREYKEVLDLFNEKNKEKSQLVAKLMELVNESEKLRMKKLEELSKNIDILH 179
           LGLTCQKKEREYKEVLDLFNEKN+EKSQLV+KLMELVNESEKLRM+KLEELSKNIDILH
Sbjct: 121 LGLTCQKKEREYKEVLDLFNEKNREKSQLVSKLMELVNESEKLRMRKLEELSKNIDILH 175

[Close]

BLAST of Bhi08G000068 vs. NCBI nr
Match: XP_004139478.1 (PREDICTED: uncharacterized protein LOC101203874 [Cucumis sativus] >KGN64906.1 hypothetical protein Csa_1G153510 [Cucumis sativus])

HSP 1 Score: 279.6 bits (714), Expect = 7.2e-72
Identity = 164/179 (91.62%), Postives = 167/179 (93.30%), Query Frame = 0


Query: 1   MTTPKQSWEAQQSQQMQRVKNSGVMISSNVN--AIGSPVKEDQEEEISRSALAVFRAKEE 60
           MTT KQSWEA   QQMQRVKNSG MISSNVN   IGSP+KEDQEEEISRSALA+FRAKEE
Sbjct: 1   MTTQKQSWEA---QQMQRVKNSG-MISSNVNNGIIGSPLKEDQEEEISRSALALFRAKEE 60

Query: 61  EIERKKMEMREKVEARLGRAEEATKRLXXXXEELEGMTDPMRKEVSFIRKKIDLVNKELK 120
           EIERKKMEMREKVEARLGRAEEATKRL    EELEGMTDPMRKEVSFIRKKIDLVNKELK
Sbjct: 61  EIERKKMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELK 120

Query: 121 PLGLTCQKKEREYKEVLDLFNEKNKEKSQLVAKLMELVNESEKLRMKKLEELSKNIDIL 178
           PLGLTCQKKEREYKEVLDLFNEKNKEKSQLV+KLMELVNESEKLRMKKLEELSKNIDIL
Sbjct: 121 PLGLTCQKKEREYKEVLDLFNEKNKEKSQLVSKLMELVNESEKLRMKKLEELSKNIDIL 175

[Close]

BLAST of Bhi08G000068 vs. NCBI nr
Match: NP_001241375.1 (uncharacterized protein LOC100796368 [Glycine max] >ACU23258.1 unknown [Glycine max] >KHN38658.1 hypothetical protein glysoja_008207 [Glycine soja] >KRH30497.1 hypothetical protein GLYMA_11G188000 [Glycine max])

HSP 1 Score: 229.6 bits (584), Expect = 8.5e-57
Identity = 132/180 (73.33%), Postives = 154/180 (85.56%), Query Frame = 0


Query: 1   MTTPKQSWEAQQSQQ--MQRVKNSGVMISSNVNAIGSPVKEDQEEEISRSALAVFRAKEE 60
           M TPKQS+E QQ QQ  +QRV+NSG MI+SN     SP+++D+EEE+SRSALA+FRAKEE
Sbjct: 1   MATPKQSYEQQQQQQPNVQRVRNSG-MINSN----QSPMRDDKEEEMSRSALAMFRAKEE 60

Query: 61  EIERKKMEMREKVEARLGRAEEATKRLXXXXEELEGMTDPMRKEVSFIRKKIDLVNKELK 120
           EIER+KME+R+KV A LGR EE TKRL    EELEG+TDP+RKEV+ +RKKID VNKELK
Sbjct: 61  EIERRKMEVRDKVHAYLGRVEEETKRLAEIREELEGLTDPLRKEVAIVRKKIDSVNKELK 120

Query: 121 PLGLTCQKKEREYKEVLDLFNEKNKEKSQLVAKLMELVNESEKLRMKKLEELSKNIDILH 179
           PLG TCQ+KEREYKE L++FNEKNKEK+QLV KLMELV ESEKLRMKKLEELSKN+D LH
Sbjct: 121 PLGQTCQRKEREYKEALEVFNEKNKEKAQLVTKLMELVTESEKLRMKKLEELSKNLDTLH 175

[Close]

BLAST of Bhi08G000068 vs. NCBI nr
Match: XP_022142637.1 (uncharacterized protein LOC111012700 [Momordica charantia])

HSP 1 Score: 226.9 bits (577), Expect = 5.5e-56
Identity = 138/179 (77.09%), Postives = 149/179 (83.24%), Query Frame = 0


Query: 1   MTTPKQSWEAQ-QSQQMQRVKNSGVMISSNVNAIGSPVKEDQEEEISRSALAVFRAKEEE 60
           MTT KQSWEAQ Q  QMQRV+NSG++  S+VNAIGSP+KEDQ+EE+SRSA A+FRAKEEE
Sbjct: 1   MTTQKQSWEAQAQQSQMQRVRNSGMI--SHVNAIGSPLKEDQDEELSRSAFALFRAKEEE 60

Query: 61  IERKKMEMREKVEARLGRAEEATKRLXXXXEELEGMTDPMRKEVSFIRKKIDLVNKELKP 120
           IERKKMEMR+KVEARLGRAEEATK  XXXX       DPMRKEVSFI       NKELKP
Sbjct: 61  IERKKMEMRDKVEARLGRAEEATKXXXXXXXXXXXXADPMRKEVSFIXXXXXXXNKELKP 120

Query: 121 LGLTCQKKEREYKEVLDLFNEKNKEKSQLVAKLMELVNESEKLRMKKLEELSKNIDILH 179
           LGLTCQKKEREYKEVL+LFNEKN+EKSQLVA       ESEKLRMKKLEELSKNIDILH
Sbjct: 121 LGLTCQKKEREYKEVLELFNEKNREKSQLVAXXXXXXXESEKLRMKKLEELSKNIDILH 177

[Close]

BLAST of Bhi08G000068 vs. NCBI nr
Match: OMO57666.1 (hypothetical protein CCACVL1_25713 [Corchorus capsularis])

HSP 1 Score: 222.2 bits (565), Expect = 1.4e-54
Identity = 124/177 (70.06%), Postives = 151/177 (85.31%), Query Frame = 0


Query: 1   MTTPKQSWEAQQSQQMQRVKNSGVMISSNVNAIGSPVKEDQEEEISRSALAVFRAKEEEI 60
           M TPKQ WE QQS QMQRVKNSG+     V+  GSP K+D+EEE+++SALA+FRAKEEEI
Sbjct: 1   MATPKQIWEQQQS-QMQRVKNSGI-----VSCNGSPTKDDKEEEMAKSALALFRAKEEEI 60

Query: 61  ERKKMEMREKVEARLGRAEEATKRLXXXXEELEGMTDPMRKEVSFIRKKIDLVNKELKPL 120
           ERKKME+R+KV++ +GR EEAT+RL    EEL+ + DPMRK+V+ IRKKID VN+ELKPL
Sbjct: 61  ERKKMEVRDKVQSYMGRVEEATRRLADIREELDALIDPMRKDVAIIRKKIDTVNRELKPL 120

Query: 121 GLTCQKKEREYKEVLDLFNEKNKEKSQLVAKLMELVNESEKLRMKKLEELSKNIDIL 178
           G +CQKKEREY+E L+ FN+KNKEK+QLV+KLMELV+ESEKLRMKKLEELSKNI+ L
Sbjct: 121 GQSCQKKEREYREALEAFNDKNKEKAQLVSKLMELVSESEKLRMKKLEELSKNIETL 171

The following BLAST results are available for this feature:

BLAST of Bhi08G000068 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi08G000068 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G27740.1	6.5e-43	56.25	Family of unknown function (DUF662)	[more]
AT5G03660.1	2.7e-41	56.65	Family of unknown function (DUF662)	[more]
AT3G52900.1	1.5e-39	56.44	Family of unknown function (DUF662)	[more]
AT2G36355.1	6.3e-30	51.59	Family of unknown function (DUF662)	[more]
AT3G09980.1	3.1e-24	46.79	Family of unknown function (DUF662)	[more]

BLAST of Bhi08G000068 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CFV6\|A0A1S3CFV6_CUCME	1.6e-72	91.06	probable DNA double-strand break repair Rad50 ATPase OS=Cucumis melo OX=3656 GN=...	[more]
tr\|A0A0A0LY59\|A0A0A0LY59_CUCSA	4.8e-72	91.62	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G153510 PE=4 SV=1	[more]
tr\|C6TK18\|C6TK18_SOYBN	5.7e-57	73.33	Uncharacterized protein OS=Glycine max OX=3847 GN=100796368 PE=2 SV=1	[more]
tr\|A0A1R3GHX7\|A0A1R3GHX7_COCAP	9.0e-55	70.06	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_25713 PE=4 ...	[more]
tr\|A0A1R3J2S8\|A0A1R3J2S8_9ROSI	9.0e-55	70.06	Golgin, RAB6-interacting OS=Corchorus olitorius OX=93759 GN=COLO4_19956 PE=4 SV=...	[more]

BLAST of Bhi08G000068 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008461743.1	2.5e-72	91.06	PREDICTED: probable DNA double-strand break repair Rad50 ATPase [Cucumis melo]	[more]
XP_004139478.1	7.2e-72	91.62	PREDICTED: uncharacterized protein LOC101203874 [Cucumis sativus] >KGN64906.1 hy...	[more]
NP_001241375.1	8.5e-57	73.33	uncharacterized protein LOC100796368 [Glycine max] >ACU23258.1 unknown [Glycine ...	[more]
XP_022142637.1	5.5e-56	77.09	uncharacterized protein LOC111012700 [Momordica charantia]	[more]
OMO57666.1	1.4e-54	70.06	hypothetical protein CCACVL1_25713 [Corchorus capsularis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007033	GORAB

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010413	glucuronoxylan metabolic process
biological_process	GO:0045492	xylan biosynthetic process
biological_process	GO:0008150	biological_process
biological_process	GO:0008033	tRNA processing
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0016740	transferase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi08M000068	Bhi08M000068	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 50..91
None	No IPR available	COILS	Coil	Coil	coord: 124..165
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	PANTHER	PTHR21470:SF4	SUBFAMILY NOT NAMED	coord: 1..178
IPR007033	RAB6-interacting golgin	PFAM	PF04949	Transcrip_act	coord: 27..175 e-value: 9.1E-71 score: 236.6
IPR007033	RAB6-interacting golgin	PANTHER	PTHR21470	NTKL-BINDING PROTEIN 1	coord: 1..178

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Bhi08G000068	Csa1G153510	Cucumber (Chinese Long) v2	cuwgoB049
Bhi08G000068	MELO3C009443	Melon (DHL92) v3.5.1	mewgoB426
Bhi08G000068	MELO3C004756	Melon (DHL92) v3.5.1	mewgoB174
Bhi08G000068	ClCG01G012520	Watermelon (Charleston Gray)	wcgwgoB232
Bhi08G000068	CSPI01G14440	Wild cucumber (PI 183967)	cpiwgoB049
Bhi08G000068	Cucsa.199940	Cucumber (Gy14) v1	cgywgoB422
Bhi08G000068	CmoCh13G003130	Cucurbita moschata (Rifu)	cmowgoB0259
Bhi08G000068	Lsi03G001020	Bottle gourd (USVL1VR-Ls)	lsiwgoB337
Bhi08G000068	CsGy1G014370	Cucumber (Gy14) v2	cgybwgoB046
Bhi08G000068	MELO3C004756.2	Melon (DHL92) v3.6.1	medwgoB176
Bhi08G000068	CsaV3_1G014610	Cucumber (Chinese Long) v3	cucwgoB051
Bhi08G000068	Cla003550	Watermelon (97103) v1	wgowmB510
Bhi08G000068	Cla97C01G011740	Watermelon (97103) v2	wgowmbB451

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi08G000068	Cucurbita maxima (Rimu)	cmawgoB0220
Bhi08G000068	Cucurbita maxima (Rimu)	cmawgoB0265
Bhi08G000068	Cucurbita maxima (Rimu)	cmawgoB0267
Bhi08G000068	Cucurbita moschata (Rifu)	cmowgoB0214
Bhi08G000068	Cucurbita pepo (Zucchini)	cpewgoB0636
Bhi08G000068	Cucurbita pepo (Zucchini)	cpewgoB0660
Bhi08G000068	Watermelon (97103) v1	wgowmB506