Cla003550 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla003550
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	cDNA clone J033118E13 full insert sequence (AHRD V1 *--- B7EU28_ORYSJ); contains Interpro domain(s) IPR007033 Protein of unknown function DUF662
Location	Chr1 : 14296472 .. 14297105 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGACGACGCAGAAACAGAGCTGGGAAGCGCAACAATCGCAGCAGATGCAGAGGGTGAAAAGCTCGGGGATGATAAGCAGCCATGCGAATGCGATTGGGAGTCCGGTGAAGGAGGATCAAGAGGAGGAGCTTTCTCGATCGGCTTTAGCTCTGTTTAGGGCTAAGGAAGAGGAGATCGAGAGGAAGAAGATGGAGATGAGAGAGAAGGTGGAAGCTCGCCTTGGAAGAGCTGAAGAAGCGACGAAGCGATTGGCGGAGATTCGCGAAGTAAGTGTGGAATCCATTGTTGATGATGGTAATAATGGTTGGTTTTAAGGTTCTTCCATTCATTAAGGTTTGTGAAATTGATAGGAACTTGAAGGAATGACGGATCCGATGAGGAAGGAAGTTTCGTTCATACGGAAGAAGATTGATTTGGTGAACAAAGAGTTGAAGCCATTGGGACTCACTTGCCAAAAGAAGGTCACAATTTCAAACTCGAGATACCCTCTTCAATCAATTTCTCATAATAATAACGATAATGATAATAATAATATATATATATTAAAATACTATTATGGTCTCACTATTTCAAGTAGGAGCATTTGTTGGTTAGATTGGGTTGAAATCCTTTCTCAACCCACTATTCTGA

mRNA sequence

ATGACGACGACGCAGAAACAGAGCTGGGAAGCGCAACAATCGCAGCAGATGCAGAGGGTGAAAAGCTCGGGGATGATAAGCAGCCATGCGAATGCGATTGGGAGTCCGGTGAAGGAGGATCAAGAGGAGGAGCTTTCTCGATCGGCTTTAGCTCTGTTTAGGGCTAAGGAAGAGGAGATCGAGAGGAAGAAGATGGAGATGAGAGAGAAGGTGGAAGCTCGCCTTGGAAGAGCTGAAGAAGCGACGAAGCGATTGGCGGAGATTCGCGAAGAACTTGAAGGAATGACGGATCCGATGAGGAAGGAAGTTTCGTTCATACGGAAGAAGATTGATTTGGTGAACAAAGAGTTGAAGCCATTGGGACTCACTTGCCAAAAGAAGATTGGGTTGAAATCCTTTCTCAACCCACTATTCTGA

Coding sequence (CDS)

ATGACGACGACGCAGAAACAGAGCTGGGAAGCGCAACAATCGCAGCAGATGCAGAGGGTGAAAAGCTCGGGGATGATAAGCAGCCATGCGAATGCGATTGGGAGTCCGGTGAAGGAGGATCAAGAGGAGGAGCTTTCTCGATCGGCTTTAGCTCTGTTTAGGGCTAAGGAAGAGGAGATCGAGAGGAAGAAGATGGAGATGAGAGAGAAGGTGGAAGCTCGCCTTGGAAGAGCTGAAGAAGCGACGAAGCGATTGGCGGAGATTCGCGAAGAACTTGAAGGAATGACGGATCCGATGAGGAAGGAAGTTTCGTTCATACGGAAGAAGATTGATTTGGTGAACAAAGAGTTGAAGCCATTGGGACTCACTTGCCAAAAGAAGATTGGGTTGAAATCCTTTCTCAACCCACTATTCTGA

Protein sequence

MTTTQKQSWEAQQSQQMQRVKSSGMISSHANAIGSPVKEDQEEELSRSALALFRAKEEEIERKKMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKPLGLTCQKKIGLKSFLNPLF

Homology

[Close]

BLAST of Cla003550 vs. TrEMBL
Match: A0A0A0LY59_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G153510 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 2.1e-53
Identity = 116/127 (91.34%), Postives = 120/127 (94.49%), Query Frame = 1


Query: 3   TTQKQSWEAQQSQQMQRVKSSGMISSHAN--AIGSPVKEDQEEELSRSALALFRAKEEEI 62
           TTQKQSWEAQQ   MQRVK+SGMISS+ N   IGSP+KEDQEEE+SRSALALFRAKEEEI
Sbjct: 2   TTQKQSWEAQQ---MQRVKNSGMISSNVNNGIIGSPLKEDQEEEISRSALALFRAKEEEI 61

Query: 63  ERKKMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKPL 122
           ERKKMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKPL
Sbjct: 62  ERKKMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKPL 121

Query: 123 GLTCQKK 128
           GLTCQKK
Sbjct: 122 GLTCQKK 125

[Close]

BLAST of Cla003550 vs. TrEMBL
Match: A0A0B2S1V7_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_008207 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 5.9e-40
Identity = 89/126 (70.63%), Postives = 109/126 (86.51%), Query Frame = 1


Query: 4   TQKQSWEAQQSQQ--MQRVKSSGMISSHANAIGSPVKEDQEEELSRSALALFRAKEEEIE 63
           T KQS+E QQ QQ  +QRV++SGMI+S+     SP+++D+EEE+SRSALA+FRAKEEEIE
Sbjct: 3   TPKQSYEQQQQQQPNVQRVRNSGMINSNQ----SPMRDDKEEEMSRSALAMFRAKEEEIE 62

Query: 64  RKKMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKPLG 123
           R+KME+R+KV A LGR EE TKRLAEIREELEG+TDP+RKEV+ +RKKID VNKELKPLG
Sbjct: 63  RRKMEVRDKVHAYLGRVEEETKRLAEIREELEGLTDPLRKEVAIVRKKIDSVNKELKPLG 122

Query: 124 LTCQKK 128
            TCQ+K
Sbjct: 123 QTCQRK 124

[Close]

BLAST of Cla003550 vs. TrEMBL
Match: C6TK18_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_11G188000 PE=2 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 5.9e-40
Identity = 89/126 (70.63%), Postives = 109/126 (86.51%), Query Frame = 1


Query: 4   TQKQSWEAQQSQQ--MQRVKSSGMISSHANAIGSPVKEDQEEELSRSALALFRAKEEEIE 63
           T KQS+E QQ QQ  +QRV++SGMI+S+     SP+++D+EEE+SRSALA+FRAKEEEIE
Sbjct: 3   TPKQSYEQQQQQQPNVQRVRNSGMINSNQ----SPMRDDKEEEMSRSALAMFRAKEEEIE 62

Query: 64  RKKMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKPLG 123
           R+KME+R+KV A LGR EE TKRLAEIREELEG+TDP+RKEV+ +RKKID VNKELKPLG
Sbjct: 63  RRKMEVRDKVHAYLGRVEEETKRLAEIREELEGLTDPLRKEVAIVRKKIDSVNKELKPLG 122

Query: 124 LTCQKK 128
            TCQ+K
Sbjct: 123 QTCQRK 124

[Close]

BLAST of Cla003550 vs. TrEMBL
Match: A0A151TNL7_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_022294 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 1.7e-39
Identity = 90/129 (69.77%), Postives = 107/129 (82.95%), Query Frame = 1


Query: 4   TQKQSWEAQQSQQ-----MQRVKSSGMISSHANAIGSPVKEDQEEELSRSALALFRAKEE 63
           T KQS+E QQ QQ     +QRV++SGMI    N   SP+++D+EEE+SRSALA+FRAKEE
Sbjct: 3   TPKQSYEQQQQQQQQQPNVQRVRNSGMI----NCNQSPMRDDKEEEMSRSALAMFRAKEE 62

Query: 64  EIERKKMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELK 123
           EIER+KME+R+KV A LGR EE TKRLAEIREELEG+TDP+RKEVS +RKKID VNKELK
Sbjct: 63  EIERRKMEVRDKVHAYLGRVEEETKRLAEIREELEGLTDPLRKEVSIVRKKIDSVNKELK 122

Query: 124 PLGLTCQKK 128
           PLG TCQ+K
Sbjct: 123 PLGQTCQRK 127

[Close]

BLAST of Cla003550 vs. TrEMBL
Match: I1LRD5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_12G086500 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 2.2e-39
Identity = 88/127 (69.29%), Postives = 109/127 (85.83%), Query Frame = 1


Query: 4   TQKQSWEAQQSQQ---MQRVKSSGMISSHANAIGSPVKEDQEEELSRSALALFRAKEEEI 63
           T KQS+E QQ QQ   +QRV++SGMI+S+     SP+++D+EEE+SRSALA+FRAKEEEI
Sbjct: 3   TPKQSYEQQQQQQQPNVQRVRNSGMINSNQ----SPMRDDKEEEMSRSALAMFRAKEEEI 62

Query: 64  ERKKMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKPL 123
           ER+K+E+R+KV A LGR EE TKRLAEIREELEG+TDP+RKEV+ +RKKID VNKELKPL
Sbjct: 63  ERRKVEVRDKVHAYLGRVEEETKRLAEIREELEGLTDPLRKEVAIVRKKIDSVNKELKPL 122

Query: 124 GLTCQKK 128
           G TCQ+K
Sbjct: 123 GQTCQRK 125

[Close]

BLAST of Cla003550 vs. NCBI nr
Match: gi|659071754|ref|XP_008461743.1| (PREDICTED: RAB6-interacting golgin [Cucumis melo])

HSP 1 Score: 217.2 bits (552), Expect = 1.7e-53
Identity = 116/126 (92.06%), Postives = 120/126 (95.24%), Query Frame = 1


Query: 3   TTQKQSWEAQQSQQMQRVKSSGMISSHAN-AIGSPVKEDQEEELSRSALALFRAKEEEIE 62
           TTQKQSWEAQQ   MQRVK+SGMISS+ N  IGSP+KEDQEEE+SRSALALFRAKEEEIE
Sbjct: 2   TTQKQSWEAQQ---MQRVKNSGMISSNVNNGIGSPLKEDQEEEISRSALALFRAKEEEIE 61

Query: 63  RKKMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKPLG 122
           RKKMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKPLG
Sbjct: 62  RKKMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKPLG 121

Query: 123 LTCQKK 128
           LTCQKK
Sbjct: 122 LTCQKK 124

[Close]

BLAST of Cla003550 vs. NCBI nr
Match: gi|449443426|ref|XP_004139478.1| (PREDICTED: uncharacterized protein LOC101203874 [Cucumis sativus])

HSP 1 Score: 216.5 bits (550), Expect = 3.0e-53
Identity = 116/127 (91.34%), Postives = 120/127 (94.49%), Query Frame = 1


Query: 3   TTQKQSWEAQQSQQMQRVKSSGMISSHAN--AIGSPVKEDQEEELSRSALALFRAKEEEI 62
           TTQKQSWEAQQ   MQRVK+SGMISS+ N   IGSP+KEDQEEE+SRSALALFRAKEEEI
Sbjct: 2   TTQKQSWEAQQ---MQRVKNSGMISSNVNNGIIGSPLKEDQEEEISRSALALFRAKEEEI 61

Query: 63  ERKKMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKPL 122
           ERKKMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKPL
Sbjct: 62  ERKKMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKPL 121

Query: 123 GLTCQKK 128
           GLTCQKK
Sbjct: 122 GLTCQKK 125

[Close]

BLAST of Cla003550 vs. NCBI nr
Match: gi|359807315|ref|NP_001241375.1| (uncharacterized protein LOC100796368 [Glycine max])

HSP 1 Score: 171.8 bits (434), Expect = 8.4e-40
Identity = 89/126 (70.63%), Postives = 109/126 (86.51%), Query Frame = 1


Query: 4   TQKQSWEAQQSQQ--MQRVKSSGMISSHANAIGSPVKEDQEEELSRSALALFRAKEEEIE 63
           T KQS+E QQ QQ  +QRV++SGMI+S+     SP+++D+EEE+SRSALA+FRAKEEEIE
Sbjct: 3   TPKQSYEQQQQQQPNVQRVRNSGMINSNQ----SPMRDDKEEEMSRSALAMFRAKEEEIE 62

Query: 64  RKKMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKPLG 123
           R+KME+R+KV A LGR EE TKRLAEIREELEG+TDP+RKEV+ +RKKID VNKELKPLG
Sbjct: 63  RRKMEVRDKVHAYLGRVEEETKRLAEIREELEGLTDPLRKEVAIVRKKIDSVNKELKPLG 122

Query: 124 LTCQKK 128
            TCQ+K
Sbjct: 123 QTCQRK 124

[Close]

BLAST of Cla003550 vs. NCBI nr
Match: gi|1012357470|gb|KYP68655.1| (hypothetical protein KK1_022294 [Cajanus cajan])

HSP 1 Score: 170.2 bits (430), Expect = 2.5e-39
Identity = 90/129 (69.77%), Postives = 107/129 (82.95%), Query Frame = 1


Query: 4   TQKQSWEAQQSQQ-----MQRVKSSGMISSHANAIGSPVKEDQEEELSRSALALFRAKEE 63
           T KQS+E QQ QQ     +QRV++SGMI    N   SP+++D+EEE+SRSALA+FRAKEE
Sbjct: 3   TPKQSYEQQQQQQQQQPNVQRVRNSGMI----NCNQSPMRDDKEEEMSRSALAMFRAKEE 62

Query: 64  EIERKKMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELK 123
           EIER+KME+R+KV A LGR EE TKRLAEIREELEG+TDP+RKEVS +RKKID VNKELK
Sbjct: 63  EIERRKMEVRDKVHAYLGRVEEETKRLAEIREELEGLTDPLRKEVSIVRKKIDSVNKELK 122

Query: 124 PLGLTCQKK 128
           PLG TCQ+K
Sbjct: 123 PLGQTCQRK 127

[Close]

BLAST of Cla003550 vs. NCBI nr
Match: gi|734375883|gb|KHN21121.1| (hypothetical protein glysoja_006600 [Glycine soja])

HSP 1 Score: 169.9 bits (429), Expect = 3.2e-39
Identity = 88/127 (69.29%), Postives = 109/127 (85.83%), Query Frame = 1


Query: 4   TQKQSWEAQQSQQ---MQRVKSSGMISSHANAIGSPVKEDQEEELSRSALALFRAKEEEI 63
           T KQS+E QQ QQ   +QRV++SGMI+S+     SP+++D+EEE+SRSALA+FRAKEEEI
Sbjct: 3   TPKQSYEQQQQQQQPNVQRVRNSGMINSNQ----SPMRDDKEEEMSRSALAMFRAKEEEI 62

Query: 64  ERKKMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKPL 123
           ER+K+E+R+KV A LGR EE TKRLAEIREELEG+TDP+RKEV+ +RKKID VNKELKPL
Sbjct: 63  ERRKVEVRDKVHAYLGRVEEETKRLAEIREELEGLTDPLRKEVAIVRKKIDSVNKELKPL 122

Query: 124 GLTCQKK 128
           G TCQ+K
Sbjct: 123 GQTCQRK 125

The following BLAST results are available for this feature:

BLAST of Cla003550 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LY59_CUCSA	2.1e-53	91.34	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G153510 PE=4 SV=1	[more]
A0A0B2S1V7_GLYSO	5.9e-40	70.63	Uncharacterized protein OS=Glycine soja GN=glysoja_008207 PE=4 SV=1	[more]
C6TK18_SOYBN	5.9e-40	70.63	Uncharacterized protein OS=Glycine max GN=GLYMA_11G188000 PE=2 SV=1	[more]
A0A151TNL7_CAJCA	1.7e-39	69.77	Uncharacterized protein OS=Cajanus cajan GN=KK1_022294 PE=4 SV=1	[more]
I1LRD5_SOYBN	2.2e-39	69.29	Uncharacterized protein OS=Glycine max GN=GLYMA_12G086500 PE=4 SV=1	[more]

BLAST of Cla003550 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659071754\|ref\|XP_008461743.1\|	1.7e-53	92.06	PREDICTED: RAB6-interacting golgin [Cucumis melo]	[more]
gi\|449443426\|ref\|XP_004139478.1\|	3.0e-53	91.34	PREDICTED: uncharacterized protein LOC101203874 [Cucumis sativus]	[more]
gi\|359807315\|ref\|NP_001241375.1\|	8.4e-40	70.63	uncharacterized protein LOC100796368 [Glycine max]	[more]
gi\|1012357470\|gb\|KYP68655.1\|	2.5e-39	69.77	hypothetical protein KK1_022294 [Cajanus cajan]	[more]
gi\|734375883\|gb\|KHN21121.1\|	3.2e-39	69.29	hypothetical protein glysoja_006600 [Glycine soja]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007033	GORAB

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0010413	glucuronoxylan metabolic process
biological_process	GO:0045492	xylan biosynthetic process
biological_process	GO:0008033	tRNA processing
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0016740	transferase activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU13184	watermelon EST collection version 2.0	transcribed_cluster
WMU14210	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla003550	Cla003550.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU14210	WMU14210	transcribed_cluster
WMU13184	WMU13184	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007033	RAB6-interacting golgin	PFAM	PF04949	Transcrip_act	coord: 26..127 score: 1.7
None	No IPR available	unknown	Coil	Coil	coord: 50..91 scor
None	No IPR available	PANTHER	PTHR21470	NTKL-BINDING PROTEIN 1	coord: 4..127 score: 7.4
None	No IPR available	PANTHER	PTHR21470:SF4	SUBFAMILY NOT NAMED	coord: 4..127 score: 7.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla003550	Cla97C01G011740	Watermelon (97103) v2	wmwmbB250
Cla003550	Csa1G153510	Cucumber (Chinese Long) v2	cuwmB042
Cla003550	MELO3C004756	Melon (DHL92) v3.5.1	mewmB159
Cla003550	ClCG01G012520	Watermelon (Charleston Gray)	wcgwmB158
Cla003550	CSPI01G14440	Wild cucumber (PI 183967)	cpiwmB046
Cla003550	Cucsa.199940	Cucumber (Gy14) v1	cgywmB392
Cla003550	CmoCh13G003130	Cucurbita moschata (Rifu)	cmowmB186
Cla003550	Lsi03G001020	Bottle gourd (USVL1VR-Ls)	lsiwmB260
Cla003550	MELO3C004756.2	Melon (DHL92) v3.6.1	medwmB155
Cla003550	CsaV3_1G014610	Cucumber (Chinese Long) v3	cucwmB049
Cla003550	Bhi08G000068	Wax gourd	wgowmB510

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla003550	Cucumber (Gy14) v2	cgybwmB043
Cla003550	Cucurbita maxima (Rimu)	cmawmB168
Cla003550	Cucurbita maxima (Rimu)	cmawmB199
Cla003550	Cucurbita moschata (Rifu)	cmowmB154
Cla003550	Cucurbita pepo (Zucchini)	cpewmB518