CsaV3_1G014610 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G014610
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionGolgin, RAB6-interacting
Locationchr1 : 10155027 .. 10157950 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTCTCCAACTCAGTCTTCATTCTTAAGGCTTTTTCCCAAACTTGTATTCATTTCATCATTTCATACTCAGTGCAGGTAACACCTTACTCTCCACTCCAATACAAAACTTACATCCCAAGCACCTCATATTCAATTACTATGAGAAAAGAAAAAAAACCCAAAAATGATTGCCACAAACCTAATCCTAGATTCCACTTCTTTGACCCAAAGCAAAAGTAAACTCTCCATCACAATTTGGTAACTCATTTTCAAATGGCAGAGACCAAAAGCAAATCAACATATACAAATATAATTTCCCAAATACAATGTGTGAATTCAAGTCTAATCAATTAGACGTTTGAGTAAAGATAAGTGAATTTTGGTTCCAAAATTTCAGAGCAAAAGGCAGAGCAGAGTACAGAGGGGAAATCAAGGACAACGATGTGTGTCTGTTGAGAAGTAATAGAGAAAAAAAAAAGTAAAGAAAGGGAGGGAGTTGGGTAGGGTTACATACATAGATACCTTTAAAGCCATTGCGGCGGGTTAAGGTTTGGCCACCTAACAGAGAAAGAAAATCATCATCATCATTTGCGAGAGAGAGATTGAGGATGACGACGCAGAAACAGAGCTGGGAGGCACAACAGATGCAGAGAGTGAAGAACTCGGGGATGATAAGCAGCAATGTGAATAATGGGATAATTGGGAGTCCGTTGAAGGAGGATCAAGAGGAGGAGATTTCAAGATCGGCATTGGCTCTGTTTAGGGCTAAGGAAGAGGAAATAGAGAGGAAGAAGATGGAGATGAGGGAGAAGGTGGAAGCTCGCCTTGGACGAGCTGAAGAAGCAACGAAGCGATTGGCGGAGATTCGGGAAGTAAGTTAAAGGTTGAAATAATGCACCATTTTGATGAACATAATAAGATGATTAATGCATGGTTGGTTCCATTCCATTGATTAGGAACTTGAAGGAATGACGGATCCGATGAGGAAGGAAGTTTCGTTCATACGGAAGAAGATTGATTTGGTGAACAAAGAGTTGAAGCCATTGGGACTCACTTGCCAAAAGAAGGTCACAATTTCATTTTTCAAATTACATCAACATTTTTTCATACTCTTTTCTTTTTCACCTTTCATTTCCTTTTGTTACGCAAAATATCATGCAATTTTATTATTTCATTTCAGTTTTGTTTTACTTTAATTTTCACCTTACTGATTAAATTACAACTCAAAACTTAAATAATAATAATTGTTATAAATACCATATAAAAAGAAACGAAATTATTTACAAAAATACAGAAAAAAAAAACTTAAATTTAAATGAGATGCAAACAGTTTAATTGTTTTTATTATATTTTATAAACTGTTTCAATATTTTACTATTTTTTTAAAATGCTCCTTAATTAAATAAAATAACATATAATTAAATTTAATTAATCTATTTTTGTATTACTTAATTATTTAACAAATAAAATAAGTTAGGAACATTTTCTTAAATAGCAAAATATTAAAGTTATTTTTTTCTTTTACTTACATATAATAACTAAAATAATTAAATTCATGTAAATGAATTAGAATATTGATAATTAACTATGAAAGTTTATATTAAATAAATAATTAAGATAGATGGTAAATATATTAGTTGAAAATTGAAATAGTAATGAGTGTTTGATTTTAATTTTAATTAGAAAATTTCATTTTATGCACACATAGTCTATGAAACTATGAAAGTTTTATTTCATGAAGGGACTAAAAGAAATTAGCTCCCCATGTTCTTCCTCCAGCTTCAAATTTCAAATTTACATTTTTTTTAGTCGTTAAAGTTTAACATATAAGAATTCTGAAATTTCAAATCACTAAACCTTTGGAAAACTATATACTTATATTAGCAAACTTATCATTTTGTTACAGATTCGTTCTAAGTTTCAAAGTTTGTATTAATGTGTTAAAAACCCTATTAGGCTACATGTGACATAGATGTAGATAAAAAATATGGACTTATTATTTTTTTAGAGCTCATAATTATTTAATATATACCTTATATTTCTAATGTCAAATTCAAAAAATATATTTTCCCCCAATTTATATAGACTATATTATTGTTTTGTTTATTTTTGTGTGTGTAGTTGAGAGTTGAAGTATATATTAGTGTTCATAACTAATATTTTGATTTATTTGGTCTCTATCAGGAGAGAGAATACAAAGAAGTGTTGGATTTATTTAACGAGAAGAACAAAGAGAAATCTCAATTGGTATCCAAACTCATGGAGGTGACTCTTTATTTCTTTCCTTTCCATAATTGTTTATTTGTTTCCAAGTTTATTGATTTTAAAATTATTTTTAAATATAATAAAATAAATTATAAAATATTTATAAATATCAACAACCTTTTCATTTAAAATGATTATCCTTAAATTCATAAGGATTTGAATATTTTTTGTTGGCCAGTTGGTGAATGAGAGCGAAAAATTGAGGATGAAGAAGCTGGAAGAGCTGAGCAAGAACATTGACATCCTTCGTTAAGAAAAAGTGTTCTTCTAAGTTCTAACCCAAATTAATCACCAACAACCACTTTGTTTGTATTTCCACATTTTGTTTCTCCTTAACTCTCATTACATATCTTTTTTTCTTGAAGTTTCCCATCAGAAAAAAAAAAAAAGAGAGGAGGGAGAAAAAAAAAAGGAAATTTAACTTTGCCAACAAATGGGAATGACATTAATTTGCTTGTATTAATAAGTTTCACAACCACGAGTGCTGTGTTGATAGTGTGATGCATGTTTGACAATAATATTTTTCCATTTCTTTACTCGAAACTTTTCTGAATAATTGAAAAGAGGACATTTCCTTCATAGATTTTTACTTCAGTAGTTCTGATCCAAAATATATGGGCAAAAGTAAGACAAGAAAGTGTTGTTTTTTACACACCAGTCCAATTACCTACTACTTCCA

mRNA sequence

ATGACGACGCAGAAACAGAGCTGGGAGGCACAACAGATGCAGAGAGTGAAGAACTCGGGGATGATAAGCAGCAATGTGAATAATGGGATAATTGGGAGTCCGTTGAAGGAGGATCAAGAGGAGGAGATTTCAAGATCGGCATTGGCTCTGTTTAGGGCTAAGGAAGAGGAAATAGAGAGGAAGAAGATGGAGATGAGGGAGAAGGTGGAAGCTCGCCTTGGACGAGCTGAAGAAGCAACGAAGCGATTGGCGGAGATTCGGGAAGAACTTGAAGGAATGACGGATCCGATGAGGAAGGAAGTTTCGTTCATACGGAAGAAGATTGATTTGGTGAACAAAGAGTTGAAGCCATTGGGACTCACTTGCCAAAAGAAGGAGAGAGAATACAAAGAAGTGTTGGATTTATTTAACGAGAAGAACAAAGAGAAATCTCAATTGGTATCCAAACTCATGGAGTTGGTGAATGAGAGCGAAAAATTGAGGATGAAGAAGCTGGAAGAGCTGAGCAAGAACATTGACATCCTTCGTTAA

Coding sequence (CDS)

ATGACGACGCAGAAACAGAGCTGGGAGGCACAACAGATGCAGAGAGTGAAGAACTCGGGGATGATAAGCAGCAATGTGAATAATGGGATAATTGGGAGTCCGTTGAAGGAGGATCAAGAGGAGGAGATTTCAAGATCGGCATTGGCTCTGTTTAGGGCTAAGGAAGAGGAAATAGAGAGGAAGAAGATGGAGATGAGGGAGAAGGTGGAAGCTCGCCTTGGACGAGCTGAAGAAGCAACGAAGCGATTGGCGGAGATTCGGGAAGAACTTGAAGGAATGACGGATCCGATGAGGAAGGAAGTTTCGTTCATACGGAAGAAGATTGATTTGGTGAACAAAGAGTTGAAGCCATTGGGACTCACTTGCCAAAAGAAGGAGAGAGAATACAAAGAAGTGTTGGATTTATTTAACGAGAAGAACAAAGAGAAATCTCAATTGGTATCCAAACTCATGGAGTTGGTGAATGAGAGCGAAAAATTGAGGATGAAGAAGCTGGAAGAGCTGAGCAAGAACATTGACATCCTTCGTTAA

Protein sequence

MTTQKQSWEAQQMQRVKNSGMISSNVNNGIIGSPLKEDQEEEISRSALALFRAKEEEIERKKMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKPLGLTCQKKEREYKEVLDLFNEKNKEKSQLVSKLMELVNESEKLRMKKLEELSKNIDILR
Homology
[Close]
BLAST of CsaV3_1G014610 vs. NCBI nr
Match: XP_004139478.1 (PREDICTED: uncharacterized protein LOC101203874 [Cucumis sativus] >KGN64906.1 hypothetical protein Csa_1G153510 [Cucumis sativus])

HSP 1 Score: 316.6 bits (810), Expect = 5.3e-83
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0 

Query: 1   MTTQKQSWEAQQMQRVKNSGMISSNVNNGIIGSPLKEDQEEEISRSALALFRAKEEEIER 60
           MTTQKQSWEAQQMQRVKNSGMISSNVNNGIIGSPLKEDQEEEISRSALALFRAKEEEIER
Sbjct: 1   MTTQKQSWEAQQMQRVKNSGMISSNVNNGIIGSPLKEDQEEEISRSALALFRAKEEEIER 60

Query: 61  KKMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKPLGL 120
           KKMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKPLGL
Sbjct: 61  KKMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKPLGL 120

Query: 121 TCQKKEREYKEVLDLFNEKNKEKSQLVSKLMELVNESEKLRMKKLEELSKNIDILR 177
           TCQKKEREYKEVLDLFNEKNKEKSQLVSKLMELVNESEKLRMKKLEELSKNIDILR
Sbjct: 121 TCQKKEREYKEVLDLFNEKNKEKSQLVSKLMELVNESEKLRMKKLEELSKNIDILR 176

[Close]
BLAST of CsaV3_1G014610 vs. NCBI nr
Match: XP_008461743.1 (PREDICTED: probable DNA double-strand break repair Rad50 ATPase [Cucumis melo])

HSP 1 Score: 306.6 bits (784), Expect = 5.5e-80
Identity = 172/175 (98.29%), Postives = 174/175 (99.43%), Query Frame = 0 

Query: 1   MTTQKQSWEAQQMQRVKNSGMISSNVNNGIIGSPLKEDQEEEISRSALALFRAKEEEIER 60
           MTTQKQSWEAQQMQRVKNSGMISSNVNNG IGSPLKEDQEEEISRSALALFRAKEEEIER
Sbjct: 1   MTTQKQSWEAQQMQRVKNSGMISSNVNNG-IGSPLKEDQEEEISRSALALFRAKEEEIER 60

Query: 61  KKMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKPLGL 120
           KKMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKPLGL
Sbjct: 61  KKMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKPLGL 120

Query: 121 TCQKKEREYKEVLDLFNEKNKEKSQLVSKLMELVNESEKLRMKKLEELSKNIDIL 176
           TCQKKEREYKEVLDLFNEKN+EKSQLVSKLMELVNESEKLRM+KLEELSKNIDIL
Sbjct: 121 TCQKKEREYKEVLDLFNEKNREKSQLVSKLMELVNESEKLRMRKLEELSKNIDIL 174

[Close]
BLAST of CsaV3_1G014610 vs. NCBI nr
Match: NP_001241375.1 (uncharacterized protein LOC100796368 [Glycine max] >ACU23258.1 unknown [Glycine max] >KHN38658.1 hypothetical protein glysoja_008207 [Glycine soja] >KRH30497.1 hypothetical protein GLYMA_11G188000 [Glycine max])

HSP 1 Score: 232.3 bits (591), Expect = 1.3e-57
Identity = 132/180 (73.33%), Postives = 155/180 (86.11%), Query Frame = 0 

Query: 1   MTTQKQSWEAQQ-----MQRVKNSGMISSNVNNGIIGSPLKEDQEEEISRSALALFRAKE 60
           M T KQS+E QQ     +QRV+NSGMI+SN       SP+++D+EEE+SRSALA+FRAKE
Sbjct: 1   MATPKQSYEQQQQQQPNVQRVRNSGMINSN------QSPMRDDKEEEMSRSALAMFRAKE 60

Query: 61  EEIERKKMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKEL 120
           EEIER+KME+R+KV A LGR EE TKRLAEIREELEG+TDP+RKEV+ +RKKID VNKEL
Sbjct: 61  EEIERRKMEVRDKVHAYLGRVEEETKRLAEIREELEGLTDPLRKEVAIVRKKIDSVNKEL 120

Query: 121 KPLGLTCQKKEREYKEVLDLFNEKNKEKSQLVSKLMELVNESEKLRMKKLEELSKNIDIL 176
           KPLG TCQ+KEREYKE L++FNEKNKEK+QLV+KLMELV ESEKLRMKKLEELSKN+D L
Sbjct: 121 KPLGQTCQRKEREYKEALEVFNEKNKEKAQLVTKLMELVTESEKLRMKKLEELSKNLDTL 174

[Close]
BLAST of CsaV3_1G014610 vs. NCBI nr
Match: XP_022731733.1 (uncharacterized protein LOC111286170 [Durio zibethinus])

HSP 1 Score: 231.1 bits (588), Expect = 2.9e-57
Identity = 130/178 (73.03%), Postives = 154/178 (86.52%), Query Frame = 0 

Query: 1   MTTQKQSWEAQ--QMQRVKNSGMISSNVNNGIIGSPLKEDQEEEISRSALALFRAKEEEI 60
           M TQKQ WE Q  QMQRVKNSG+ISSN      GSP+K+D+EEE+ +SALALFRAKEEEI
Sbjct: 4   MATQKQIWEQQQSQMQRVKNSGIISSN------GSPIKDDKEEEMEKSALALFRAKEEEI 63

Query: 61  ERKKMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKPL 120
           ERKKME+R+KV+A +GR EEAT+RLA+IREEL+ + DPMRKE++  RKKID VN+ELKPL
Sbjct: 64  ERKKMEVRDKVQAYMGRVEEATRRLADIREELDALIDPMRKEIAIQRKKIDTVNRELKPL 123

Query: 121 GLTCQKKEREYKEVLDLFNEKNKEKSQLVSKLMELVNESEKLRMKKLEELSKNIDILR 177
           G +CQKKEREYKE L+ FN+KNKEK+QLVSKLMELV+ESE+LRM KLEELSKNI+ LR
Sbjct: 124 GQSCQKKEREYKEALEAFNDKNKEKAQLVSKLMELVSESERLRMTKLEELSKNIETLR 175

[Close]
BLAST of CsaV3_1G014610 vs. NCBI nr
Match: OMO89086.1 (Golgin, RAB6-interacting [Corchorus olitorius])

HSP 1 Score: 228.8 bits (582), Expect = 1.4e-56
Identity = 128/178 (71.91%), Postives = 154/178 (86.52%), Query Frame = 0 

Query: 1   MTTQKQSWEAQ--QMQRVKNSGMISSNVNNGIIGSPLKEDQEEEISRSALALFRAKEEEI 60
           M T KQ WE Q  QMQRVKNSG++S N      GSP K+D+EEE+++SALALFRAKEEEI
Sbjct: 1   MATPKQIWEQQQSQMQRVKNSGIVSCN------GSPTKDDKEEEMAKSALALFRAKEEEI 60

Query: 61  ERKKMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKPL 120
           ERKKME+R+KV++ +GR EEAT+RLA+IREEL+ + DPMRK+V+ IRKKID VN+ELKPL
Sbjct: 61  ERKKMEVRDKVQSYMGRVEEATRRLADIREELDALIDPMRKDVAIIRKKIDTVNRELKPL 120

Query: 121 GLTCQKKEREYKEVLDLFNEKNKEKSQLVSKLMELVNESEKLRMKKLEELSKNIDILR 177
           G +CQKKEREY+E L+ FN+KNKEK+QLVSKLMELV+ESEKLRMKKLEELSKNI+ LR
Sbjct: 121 GQSCQKKEREYREALEAFNDKNKEKAQLVSKLMELVSESEKLRMKKLEELSKNIETLR 172

[Close]
BLAST of CsaV3_1G014610 vs. TAIR10
Match: AT2G27740.1 (Family of unknown function (DUF662) )

HSP 1 Score: 178.7 bits (452), Expect = 3.1e-45
Identity = 106/177 (59.89%), Postives = 137/177 (77.40%), Query Frame = 0 

Query: 1   MTTQKQSWEAQQ---MQRVKNSGMISSNVNNGIIGSPLKEDQEEEISRSALALFRAKEEE 60
           M T +Q  E  Q   +QR+K+SG IS N      GSP+ +++EEE+S+SA ALF+AKE+E
Sbjct: 1   MATTRQILEQPQSPFIQRIKSSGNISMN------GSPMIDEKEEELSQSAFALFKAKEDE 60

Query: 61  IERKKMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKP 120
           IER+KME++++V+ +LG AEEAT+RLAEIREELE +TDPMRKE+S           ELKP
Sbjct: 61  IERRKMEVKDRVQKKLGLAEEATRRLAEIREELEALTDPMRKEISAXXXXXXXXXXELKP 120

Query: 121 LGLTCQKKEREYKEVLDLFNEKNKEKSQLVSKLMELVNESEKLRMKKLEELSKNIDI 175
           LG +CQ+KERE+KE L+ +NEKNKEK+  VSKL+ELV ESEKLRM KLEELSK+I+I
Sbjct: 121 LGQSCQRKEREFKEALEAYNEKNKEKAIFVSKLVELVTESEKLRMTKLEELSKSIEI 171

[Close]
BLAST of CsaV3_1G014610 vs. TAIR10
Match: AT5G03660.1 (Family of unknown function (DUF662) )

HSP 1 Score: 168.7 bits (426), Expect = 3.2e-42
Identity = 96/171 (56.14%), Postives = 125/171 (73.10%), Query Frame = 0 

Query: 6   QSWEAQQMQRVKNSGMISSNVNNGIIGSPLKEDQEEEISRSALALFRAKEEEIERKKMEM 65
           Q  E  Q         +   ++  +  S   + +++E+S  AL+ F+AKEEEIE+KKME+
Sbjct: 2   QPTETSQPAPSDQGRRLKDQLSESMSFSSQMKKEDDELSMKALSAFKAKEEEIEKKKMEI 61

Query: 66  REKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKPLGLTCQKK 125
           RE+V+A+LGR E+ +KRLA IREELEG  DPMRKEV+ +RKKID ++KELKPLG T QKK
Sbjct: 62  RERVQAQLGRVEDESKRLAMIREELEGFADPMRKEVTMVRKKIDSLDKELKPLGNTVQKK 121

Query: 126 EREYKEVLDLFNEKNKEKSQLVSKLMELVNESEKLRMKKLEELSKNIDILR 177
           E EYK+ L+ FNEKNKEK +L++KL EL  ESEK R KKLEELSKNID+ +
Sbjct: 122 ETEYKDALEAFNEKNKEKVELITKLQELEGESEKFRFKKLEELSKNIDLTK 172

[Close]
BLAST of CsaV3_1G014610 vs. TAIR10
Match: AT3G52900.1 (Family of unknown function (DUF662) )

HSP 1 Score: 157.1 bits (396), Expect = 9.7e-39
Identity = 94/166 (56.63%), Postives = 127/166 (76.51%), Query Frame = 0 

Query: 13  MQRVKNSGMIS-SNVN-NGIIGSPLKEDQEEEISRSALALFRAKEEEIERKKMEMREKVE 72
           M    NSG  + S VN NG +  P+++++EEEI + A+  F+A+EEEIERKKM ++EKV+
Sbjct: 1   MSSKNNSGAAAVSGVNTNGKL--PMEDNEEEEIWKVAVTRFQAREEEIERKKMTVKEKVQ 60

Query: 73  ARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKPLGLTCQKKEREYK 132
            RLG AEEAT+ L +  EELE M DPMRKEV  +RKKID+ N+++K L  +CQKKE+EYK
Sbjct: 61  QRLGFAEEATRCLTQTLEELEIMGDPMRKEVGMVRKKIDMANRDIKSLAQSCQKKEKEYK 120

Query: 133 EVLDLFNEKNKEKSQLVSKLMELVNESEKLRMKKLEELSKNIDILR 177
           + L+ FNEKNKEK+ LVS LMEL+ ESE+LR+KKLEE++K +  L+
Sbjct: 121 DTLEAFNEKNKEKAHLVSMLMELLAESERLRIKKLEEINKTVGTLQ 164

[Close]
BLAST of CsaV3_1G014610 vs. TAIR10
Match: AT2G36355.1 (Family of unknown function (DUF662) )

HSP 1 Score: 131.3 bits (329), Expect = 5.7e-31
Identity = 83/159 (52.20%), Postives = 112/159 (70.44%), Query Frame = 0 

Query: 18  NSGMISSNVNNGIIGSPLKEDQEEEISRSALALFRAKEEEIERKKMEMREKVEARLGRAE 77
           NSG  +S  +      P++E+QEEEI R+    F+A+EEEIERKKM +++K++ RLG AE
Sbjct: 5   NSGATTSTKSK----IPMEENQEEEIWRN----FQAREEEIERKKMAVKDKIQQRLGFAE 64

Query: 78  EATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKPLGLTCQKKEREYKEVLDLFN 137
           EAT+ L +  E LE M DPMRKEV  +RKKI++ N+E+K L  +CQKK          F+
Sbjct: 65  EATRSLTQTLEGLEIMGDPMRKEVGMVRKKIEMANREIKSLSQSCQKKXXXXXXXXXAFD 124

Query: 138 EKNKEKSQLVSKLMELVNESEKLRMKKLEELSKNIDILR 177
           EKNKEK+ LVS LMEL+ ESE++R+KKLEE++K I  LR
Sbjct: 125 EKNKEKAHLVSILMELLAESERVRVKKLEEINKTIGSLR 155

[Close]
BLAST of CsaV3_1G014610 vs. TAIR10
Match: AT3G09980.1 (Family of unknown function (DUF662) )

HSP 1 Score: 108.6 bits (270), Expect = 4.0e-24
Identity = 72/156 (46.15%), Postives = 94/156 (60.26%), Query Frame = 0 

Query: 18  NSGMISSNVNNGIIGSPLKEDQEEEISRSALALFRAKEEEIERKKMEMREKVEARLGRAE 77
           +S  + + ++  +  S     ++EE+SR+AL+ FRAKEEEIE+KKME+RE+V+A+LGR E
Sbjct: 20  HSRQLGAQLSGSMSFSSQMSKEDEEMSRTALSAFRAKEEEIEKKKMEIRERVQAQLGRVE 79

Query: 78  EATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKPLGLTCQKKEREYKEVLDLFN 137
           E TKRLA IREELEG+ DPMR                                       
Sbjct: 80  EETKRLALIREELEGLADPMRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 139

Query: 138 EKNKEKSQLVSKLMELVNESEKLRMKKLEELSKNID 174
              +EK QL+++LMELV ESEK+RMKKLEELSKNID
Sbjct: 140 XXXREKVQLITRLMELVGESEKMRMKKLEELSKNID 175

[Close]
BLAST of CsaV3_1G014610 vs. TrEMBL
Match: tr|A0A0A0LY59|A0A0A0LY59_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G153510 PE=4 SV=1)

HSP 1 Score: 316.6 bits (810), Expect = 3.5e-83
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0 

Query: 1   MTTQKQSWEAQQMQRVKNSGMISSNVNNGIIGSPLKEDQEEEISRSALALFRAKEEEIER 60
           MTTQKQSWEAQQMQRVKNSGMISSNVNNGIIGSPLKEDQEEEISRSALALFRAKEEEIER
Sbjct: 1   MTTQKQSWEAQQMQRVKNSGMISSNVNNGIIGSPLKEDQEEEISRSALALFRAKEEEIER 60

Query: 61  KKMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKPLGL 120
           KKMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKPLGL
Sbjct: 61  KKMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKPLGL 120

Query: 121 TCQKKEREYKEVLDLFNEKNKEKSQLVSKLMELVNESEKLRMKKLEELSKNIDILR 177
           TCQKKEREYKEVLDLFNEKNKEKSQLVSKLMELVNESEKLRMKKLEELSKNIDILR
Sbjct: 121 TCQKKEREYKEVLDLFNEKNKEKSQLVSKLMELVNESEKLRMKKLEELSKNIDILR 176

[Close]
BLAST of CsaV3_1G014610 vs. TrEMBL
Match: tr|A0A1S3CFV6|A0A1S3CFV6_CUCME (probable DNA double-strand break repair Rad50 ATPase OS=Cucumis melo OX=3656 GN=LOC103500274 PE=4 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 3.6e-80
Identity = 172/175 (98.29%), Postives = 174/175 (99.43%), Query Frame = 0 

Query: 1   MTTQKQSWEAQQMQRVKNSGMISSNVNNGIIGSPLKEDQEEEISRSALALFRAKEEEIER 60
           MTTQKQSWEAQQMQRVKNSGMISSNVNNG IGSPLKEDQEEEISRSALALFRAKEEEIER
Sbjct: 1   MTTQKQSWEAQQMQRVKNSGMISSNVNNG-IGSPLKEDQEEEISRSALALFRAKEEEIER 60

Query: 61  KKMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKPLGL 120
           KKMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKPLGL
Sbjct: 61  KKMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKPLGL 120

Query: 121 TCQKKEREYKEVLDLFNEKNKEKSQLVSKLMELVNESEKLRMKKLEELSKNIDIL 176
           TCQKKEREYKEVLDLFNEKN+EKSQLVSKLMELVNESEKLRM+KLEELSKNIDIL
Sbjct: 121 TCQKKEREYKEVLDLFNEKNREKSQLVSKLMELVNESEKLRMRKLEELSKNIDIL 174

[Close]
BLAST of CsaV3_1G014610 vs. TrEMBL
Match: tr|C6TK18|C6TK18_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100796368 PE=2 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 8.7e-58
Identity = 132/180 (73.33%), Postives = 155/180 (86.11%), Query Frame = 0 

Query: 1   MTTQKQSWEAQQ-----MQRVKNSGMISSNVNNGIIGSPLKEDQEEEISRSALALFRAKE 60
           M T KQS+E QQ     +QRV+NSGMI+SN       SP+++D+EEE+SRSALA+FRAKE
Sbjct: 1   MATPKQSYEQQQQQQPNVQRVRNSGMINSN------QSPMRDDKEEEMSRSALAMFRAKE 60

Query: 61  EEIERKKMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKEL 120
           EEIER+KME+R+KV A LGR EE TKRLAEIREELEG+TDP+RKEV+ +RKKID VNKEL
Sbjct: 61  EEIERRKMEVRDKVHAYLGRVEEETKRLAEIREELEGLTDPLRKEVAIVRKKIDSVNKEL 120

Query: 121 KPLGLTCQKKEREYKEVLDLFNEKNKEKSQLVSKLMELVNESEKLRMKKLEELSKNIDIL 176
           KPLG TCQ+KEREYKE L++FNEKNKEK+QLV+KLMELV ESEKLRMKKLEELSKN+D L
Sbjct: 121 KPLGQTCQRKEREYKEALEVFNEKNKEKAQLVTKLMELVTESEKLRMKKLEELSKNLDTL 174

[Close]
BLAST of CsaV3_1G014610 vs. TrEMBL
Match: tr|A0A1R3J2S8|A0A1R3J2S8_9ROSI (Golgin, RAB6-interacting OS=Corchorus olitorius OX=93759 GN=COLO4_19956 PE=4 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 9.6e-57
Identity = 128/178 (71.91%), Postives = 154/178 (86.52%), Query Frame = 0 

Query: 1   MTTQKQSWEAQ--QMQRVKNSGMISSNVNNGIIGSPLKEDQEEEISRSALALFRAKEEEI 60
           M T KQ WE Q  QMQRVKNSG++S N      GSP K+D+EEE+++SALALFRAKEEEI
Sbjct: 1   MATPKQIWEQQQSQMQRVKNSGIVSCN------GSPTKDDKEEEMAKSALALFRAKEEEI 60

Query: 61  ERKKMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKPL 120
           ERKKME+R+KV++ +GR EEAT+RLA+IREEL+ + DPMRK+V+ IRKKID VN+ELKPL
Sbjct: 61  ERKKMEVRDKVQSYMGRVEEATRRLADIREELDALIDPMRKDVAIIRKKIDTVNRELKPL 120

Query: 121 GLTCQKKEREYKEVLDLFNEKNKEKSQLVSKLMELVNESEKLRMKKLEELSKNIDILR 177
           G +CQKKEREY+E L+ FN+KNKEK+QLVSKLMELV+ESEKLRMKKLEELSKNI+ LR
Sbjct: 121 GQSCQKKEREYREALEAFNDKNKEKAQLVSKLMELVSESEKLRMKKLEELSKNIETLR 172

[Close]
BLAST of CsaV3_1G014610 vs. TrEMBL
Match: tr|I1LRD5|I1LRD5_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_12G086500 PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 2.8e-56
Identity = 130/181 (71.82%), Postives = 152/181 (83.98%), Query Frame = 0 

Query: 1   MTTQKQSWE------AQQMQRVKNSGMISSNVNNGIIGSPLKEDQEEEISRSALALFRAK 60
           M T KQS+E         +QRV+NSGMI+SN       SP+++D+EEE+SRSALA+FRAK
Sbjct: 1   MATPKQSYEXXXXXXXXNVQRVRNSGMINSN------QSPMRDDKEEEMSRSALAMFRAK 60

Query: 61  EEEIERKKMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKE 120
           EEEIER+K+E+R+KV A LGR EE TKRLAEIREELEG+TDP+RKEV+ +RKKID VNKE
Sbjct: 61  EEEIERRKVEVRDKVHAYLGRVEEETKRLAEIREELEGLTDPLRKEVAIVRKKIDSVNKE 120

Query: 121 LKPLGLTCQKKEREYKEVLDLFNEKNKEKSQLVSKLMELVNESEKLRMKKLEELSKNIDI 176
           LKPLG TCQ+KEREYKE LD FNEKNKEK+QLV+KLMELV ESEKLRMKKLEELSKN+D 
Sbjct: 121 LKPLGQTCQRKEREYKEALDAFNEKNKEKAQLVTKLMELVTESEKLRMKKLEELSKNVDT 175

The following BLAST results are available for this feature:
BLAST of CsaV3_1G014610 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004139478.15.3e-83100.00PREDICTED: uncharacterized protein LOC101203874 [Cucumis sativus] >KGN64906.1 hy... [more]
XP_008461743.15.5e-8098.29PREDICTED: probable DNA double-strand break repair Rad50 ATPase [Cucumis melo][more]
NP_001241375.11.3e-5773.33uncharacterized protein LOC100796368 [Glycine max] >ACU23258.1 unknown [Glycine ... [more]
XP_022731733.12.9e-5773.03uncharacterized protein LOC111286170 [Durio zibethinus][more]
OMO89086.11.4e-5671.91Golgin, RAB6-interacting [Corchorus olitorius][more]
BLAST of CsaV3_1G014610 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G27740.13.1e-4559.89Family of unknown function (DUF662) [more]
AT5G03660.13.2e-4256.14Family of unknown function (DUF662) [more]
AT3G52900.19.7e-3956.63Family of unknown function (DUF662) [more]
AT2G36355.15.7e-3152.20Family of unknown function (DUF662) [more]
AT3G09980.14.0e-2446.15Family of unknown function (DUF662) [more]
BLAST of CsaV3_1G014610 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G014610 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LY59|A0A0A0LY59_CUCSA3.5e-83100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G153510 PE=4 SV=1[more]
tr|A0A1S3CFV6|A0A1S3CFV6_CUCME3.6e-8098.29probable DNA double-strand break repair Rad50 ATPase OS=Cucumis melo OX=3656 GN=... [more]
tr|C6TK18|C6TK18_SOYBN8.7e-5873.33Uncharacterized protein OS=Glycine max OX=3847 GN=100796368 PE=2 SV=1[more]
tr|A0A1R3J2S8|A0A1R3J2S8_9ROSI9.6e-5771.91Golgin, RAB6-interacting OS=Corchorus olitorius OX=93759 GN=COLO4_19956 PE=4 SV=... [more]
tr|I1LRD5|I1LRD5_SOYBN2.8e-5671.82Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_12G086500 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007033GORAB
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0010413 glucuronoxylan metabolic process
biological_process GO:0045492 xylan biosynthetic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G014610.1CsaV3_1G014610.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 48..89
NoneNo IPR availableCOILSCoilCoilcoord: 122..156
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..32
NoneNo IPR availablePANTHERPTHR21470:SF4SUBFAMILY NOT NAMEDcoord: 1..175
IPR007033RAB6-interacting golginPFAMPF04949Transcrip_actcoord: 32..173
e-value: 5.3E-71
score: 237.4
IPR007033RAB6-interacting golginPANTHERPTHR21470NTKL-BINDING PROTEIN 1coord: 1..175

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G014610CSPI01G14440Wild cucumber (PI 183967)cpicucB001
CsaV3_1G014610Cucsa.199940Cucumber (Gy14) v1cgycucB322
CsaV3_1G014610CmaCh06G004560Cucurbita maxima (Rimu)cmacucB0962
CsaV3_1G014610CmoCh06G004570Cucurbita moschata (Rifu)cmocucB0951
CsaV3_1G014610CmoCh13G003130Cucurbita moschata (Rifu)cmocucB0221
CsaV3_1G014610Cp4.1LG08g10340Cucurbita pepo (Zucchini)cpecucB1044
CsaV3_1G014610CsGy1G014370Cucumber (Gy14) v2cgybcucB002
CsaV3_1G014610Cla017717Watermelon (97103) v1cucwmB009
CsaV3_1G014610Cla003550Watermelon (97103) v1cucwmB049
CsaV3_1G014610MELO3C004756Melon (DHL92) v3.5.1cucmeB010
CsaV3_1G014610MELO3C009443Melon (DHL92) v3.5.1cucmeB072
CsaV3_1G014610ClCG01G012520Watermelon (Charleston Gray)cucwcgB026
CsaV3_1G014610Lsi03G001020Bottle gourd (USVL1VR-Ls)cuclsiB048
CsaV3_1G014610MELO3C004756.2Melon (DHL92) v3.6.1cucmedB009
CsaV3_1G014610Cla97C01G011740Watermelon (97103) v2cucwmbB008
CsaV3_1G014610Bhi08G000068Wax gourdcucwgoB051
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G014610Cucumber (Chinese Long) v3cuccucB046
CsaV3_1G014610Cucurbita maxima (Rimu)cmacucB0188
CsaV3_1G014610Cucurbita maxima (Rimu)cmacucB0234
CsaV3_1G014610Cucurbita maxima (Rimu)cmacucB0473
CsaV3_1G014610Cucurbita maxima (Rimu)cmacucB0694
CsaV3_1G014610Cucurbita moschata (Rifu)cmocucB0172
CsaV3_1G014610Cucurbita pepo (Zucchini)cpecucB0631
CsaV3_1G014610Cucurbita pepo (Zucchini)cpecucB0635
CsaV3_1G014610Bottle gourd (USVL1VR-Ls)cuclsiB005
CsaV3_1G014610Bottle gourd (USVL1VR-Ls)cuclsiB021
CsaV3_1G014610Watermelon (Charleston Gray)cucwcgB030
CsaV3_1G014610Watermelon (97103) v1cucwmB074
CsaV3_1G014610Watermelon (97103) v2cucwmbB025