Lsi02G005280 (gene) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: five_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.CGTCGCCAGTGGCATTTCTGGAGGGAAATAAAGGCGGATGGAAGCAGTGACAGTGCCGCCAAATGCAGTAAATTGTGAATCCAGAAGCCTCTGCTCTGCAATGGAAACTGGGATGGAAGAAGACGACTCCGCCTCCGAACTCTTGAGGGACAGATTCCGACTCTCCACCATTTCTATCGCTGAAGCTGAAGGTTAATTATCTTCATCTTACTCTCTTCATCTTCGAGCCTGTCTTCTTTTATATGTAATATAAGCTGAATCGACCGGAGAAAGAGAAAGTATTATCCTCCGATTACTGAATGCGAAGGCGAACTTTCCATATTTCTGTTTGGCTTACTCTATTTTCGAACTGTTTGGTTTGTTTTTCAGCGAAGAGAAGCGGCATGGAAATTTCTGAACCCGTGATGACTTGTGTCGCTGATTTAGCCTTCAAATATACAAGTTAGTTTACTTTTCTTTTCTGCCTGTTTTGAGTCTGCAATGTTATTTTGAGCACTTTGTTTCTACGTGACTAATCCCACCATTCGGAGCACTTTCATTTGTTGATTCTTCATTATGTGGATAATCTAATTGCTAATTATTTTAATTTCCCTTCTCTTCTACCGGTGTTTTCATCATTTTTAGGTAGCTTATATGTGATTTCAATTATAAATTTCCTTATTATTTAGCATGCATTCGGTTTGTTGGGACGCCTCTCTGAGCTTTGTTGTTAAATTGTGTGACCTAGTTGGAAGAAACTATATATCTTTGGTCAATTCTGTTTCCAGAAGAACAAATGATGGAGAGACAATTGTGATATCTTAAAGAAAGACTTTGCATGATACTTTTGGATTCTAATCAGATGTTCTTATAGTTCATATGAATGTTTCTTCTTATTCTACCTTGAGACTTACACCTTACAGCGATCATGTTAGGTGTAAACCCTTAACTCTCGTTGTGCTCTTGTGGCGCTAATCTTGAGACCTAGATTTTGTGCTTCGCTTCAAGGAATACAATGGGAAGGATAGTCCTAGTTGTCTTGTGTTTCTTTGTTTATATTTCAATCACGTAAAGAAGACATATATTATTTTAATTTATATTTATATATTAGCTTCAAGCCATTTTCTGTTATTGATGAATGTTTAATTCATTGTCTAAAAGAAGTAAATATATACTTATGAATGATTTTGTAGGTTTATAAAGTTTTGACCAGACTTTAAGTTCATATCTTGGTACAGCGTCTATTTGTAGTCAGAGGGCTAACATATGAACCACCAATGGTATATATAATATATTAGATATTATTGGGTTCTGATCCATCTCAAAATCAATTGGCAAAGAGAGGAATAGTCCATCTATCTTTTAAAGAGTGTGAGATCCCTTGATTTGTCCAATGTAGAATTCTCAACATACCCTCTCAAGATGGTGCCTCTTTTGGGTTCATCATTCTTGATGGATCCCAATTTCTTTTTATTGGACCGAATACCCATTTGAGTTTTATGGGCTCTGACCCCATATTAGATAATATGGGATTCCATCTCAAAACCAATTGATAAGGAGAGTGTAATCCATCTATCTTATAAAGAGTGTGAGGTCCCTTGATTTGTCCAATGTGGGATCCTCAACATAGTACATGCAAGGAAAGCAAATTTTTGTTTACTGTGCTGCAGTAGTTCTAGTTGCATCTAAGTCAGCAAGGAAAGAAGATAATTCTGTCATATTTATATTTGCTTTGTTTTTATGATTCTCAAAGTGTTGCAATGAGATAACGGAATGATAACTTGTGTAGCAGAACAGTTGGCGAAGGACCTTGAGTTATTTGTTCAGCATGCTGGTCGGAAATCTGTGAATACAGAAGATGTAATACTATCAGGTTAGATTGTCCGATTCCCAAGTTGTTGTATTACTGTCTAGTTATATTTAGTCCATATGCAACAGACTTTAAGTATTACTTAATTGCCTAAACCTCTTCGCTTCTGCTTCATTTTGGTCTCAGCCCATAGAAATGAGCATTTGGCTGCCATATTAACATCCATCTGCAATGATCTAAAGACTAAAGAACCTCAAGGTGAGAGAGCGAGAAAAGGCACCAAAAAAGGAAGATAGAGATAGAGGTGTAGTGCATATTACTGACGCCTAATCACACCTCCCATCGGGCTGATCTCTAGTTAACAAGGGTGCATACCAACAAGCGATGGCAATAGCTTATGATTTCTTTCCTTTTCTTGGTTATACTAACTAG CGTCGCCAGTGGCATTTCTGGAGGGAAATAAAGGCGGATGGAAGCAGTGACAGTGCCGCCAAATGCAGTAAATTGTGAATCCAGAAGCCTCTGCTCTGCAATGGAAACTGGGATGGAAGAAGACGACTCCGCCTCCGAACTCTTGAGGGACAGATTCCGACTCTCCACCATTTCTATCGCTGAAGCTGAAGCGAAGAGAAGCGGCATGGAAATTTCTGAACCCGTGATGACTTGTGTCGCTGATTTAGCCTTCAAATATACAACAGAACAGTTGGCGAAGGACCTTGAGTTATTTGTTCAGCATGCTGGTCGGAAATCTGTGAATACAGAAGATGTAATACTATCAGCCCATAGAAATGAGCATTTGGCTGCCATATTAACATCCATCTGCAATGATCTAAAGACTAAAGAACCTCAAGTTAACAAGGGTGCATACCAACAAGCGATGGCAATAGCTTATGATTTCTTTCCTTTTCTTGGTTATACTAACTAG ATGGAAGCAGTGACAGTGCCGCCAAATGCAGTAAATTGTGAATCCAGAAGCCTCTGCTCTGCAATGGAAACTGGGATGGAAGAAGACGACTCCGCCTCCGAACTCTTGAGGGACAGATTCCGACTCTCCACCATTTCTATCGCTGAAGCTGAAGCGAAGAGAAGCGGCATGGAAATTTCTGAACCCGTGATGACTTGTGTCGCTGATTTAGCCTTCAAATATACAACAGAACAGTTGGCGAAGGACCTTGAGTTATTTGTTCAGCATGCTGGTCGGAAATCTGTGAATACAGAAGATGTAATACTATCAGCCCATAGAAATGAGCATTTGGCTGCCATATTAACATCCATCTGCAATGATCTAAAGACTAAAGAACCTCAAGTTAACAAGGGTGCATACCAACAAGCGATGGCAATAGCTTATGATTTCTTTCCTTTTCTTGGTTATACTAACTAG MEAVTVPPNAVNCESRSLCSAMETGMEEDDSASELLRDRFRLSTISIAEAEAKRSGMEISEPVMTCVADLAFKYTTEQLAKDLELFVQHAGRKSVNTEDVILSAHRNEHLAAILTSICNDLKTKEPQVNKGAYQQAMAIAYDFFPFLGYTN
BLAST of Lsi02G005280 vs. TrEMBL
Match: A0A0A0LR97_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G051770 PE=4 SV=1) HSP 1 Score: 190.3 bits (482), Expect = 1.7e-45 Identity = 99/106 (93.40%), Postives = 103/106 (97.17%), Query Frame = 1
BLAST of Lsi02G005280 vs. TrEMBL
Match: M5WE31_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017850mg PE=4 SV=1) HSP 1 Score: 158.3 bits (399), Expect = 7.4e-36 Identity = 82/101 (81.19%), Postives = 90/101 (89.11%), Query Frame = 1
BLAST of Lsi02G005280 vs. TrEMBL
Match: A0A022QDG1_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a016064mg PE=4 SV=1) HSP 1 Score: 156.8 bits (395), Expect = 2.1e-35 Identity = 77/104 (74.04%), Postives = 92/104 (88.46%), Query Frame = 1
BLAST of Lsi02G005280 vs. TrEMBL
Match: M1BKK1_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400018389 PE=4 SV=1) HSP 1 Score: 153.7 bits (387), Expect = 1.8e-34 Identity = 75/110 (68.18%), Postives = 93/110 (84.55%), Query Frame = 1
BLAST of Lsi02G005280 vs. TrEMBL
Match: B9IFK8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s11720g PE=4 SV=2) HSP 1 Score: 152.1 bits (383), Expect = 5.3e-34 Identity = 77/105 (73.33%), Postives = 88/105 (83.81%), Query Frame = 1
BLAST of Lsi02G005280 vs. TAIR10
Match: AT5G50930.1 (AT5G50930.1 Histone superfamily protein) HSP 1 Score: 141.7 bits (356), Expect = 3.6e-34 Identity = 77/131 (58.78%), Postives = 92/131 (70.23%), Query Frame = 1
BLAST of Lsi02G005280 vs. NCBI nr
Match: gi|778658214|ref|XP_011652290.1| (PREDICTED: centromere protein S isoform X1 [Cucumis sativus]) HSP 1 Score: 198.7 bits (504), Expect = 7.0e-48 Identity = 101/106 (95.28%), Postives = 104/106 (98.11%), Query Frame = 1
BLAST of Lsi02G005280 vs. NCBI nr
Match: gi|659067571|ref|XP_008440142.1| (PREDICTED: centromere protein S isoform X1 [Cucumis melo]) HSP 1 Score: 193.7 bits (491), Expect = 2.3e-46 Identity = 99/106 (93.40%), Postives = 102/106 (96.23%), Query Frame = 1
BLAST of Lsi02G005280 vs. NCBI nr
Match: gi|449473866|ref|XP_004154006.1| (PREDICTED: centromere protein S isoform X2 [Cucumis sativus]) HSP 1 Score: 190.3 bits (482), Expect = 2.5e-45 Identity = 99/106 (93.40%), Postives = 103/106 (97.17%), Query Frame = 1
BLAST of Lsi02G005280 vs. NCBI nr
Match: gi|659067575|ref|XP_008440159.1| (PREDICTED: centromere protein S isoform X2 [Cucumis melo]) HSP 1 Score: 185.3 bits (469), Expect = 8.1e-44 Identity = 97/106 (91.51%), Postives = 101/106 (95.28%), Query Frame = 1
BLAST of Lsi02G005280 vs. NCBI nr
Match: gi|595858860|ref|XP_007210833.1| (hypothetical protein PRUPE_ppa017850mg [Prunus persica]) HSP 1 Score: 158.3 bits (399), Expect = 1.1e-35 Identity = 82/101 (81.19%), Postives = 90/101 (89.11%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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