CsaV3_1G009910 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G009910
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Centromere protein S-like
Location	chr1 : 6178355 .. 6181041 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GGACAAAAAAGAGAAAAAGAAAAAAAACAAATGAAAAGAGAATGGTGAAACGATTCGTTTAAGGCCGTCCCGTGCCGTCGTCAGATTCATTCGTGGAGGGAAATAAATGCGAAATGGCAAAAGGTAAATTGTAAGCAATGGAAACTGGAATGGAAGAAGACGACTCCGCTTCCGAACTCTTGAGGGACAGGTTCCGGCTCTCCTCTATTTCTATCGCTGAAGCTGAAGGTTAACGTCATCTCCACTCCCGATTACTGAATGCTAATTCCATCTTTTCTTACTTTTTGTTTCTCTTACTCTTCTGTCCAACTGTTTGGTTTGTTTTGCAGCGAATAAAAGCGGCATGGAAATTTCTGAACCTGTGATGACTTGTGTTGCTGATTTAGCATTCAAATATACAAGTTTGTTTACCTCGCTTTTCTGCCTGTTTTGAGTCTGGAGTGTTATTTTTAGTGATTTATACTTCCATTCTTCATTATGTTCATAATCTAATTGCTTATTATTTTAATTTTACTTCTCTTCTACCTGTGCTTCCATCAATTTTAGGTAGCTTATTTGTGATTTCAACTATATATTTCTTTACTCTTTGCCGTGCATTCGGTTTTGTTAGGACGCCTCTCTGTGCTTTGTTGTTAAGTTGTGTGACCTAGTTGGAAGGAGACTGCATTACTTTGGTCAAGTTTAAGAGAGTAAAAATTAACTTTGAGAGAAGTTTCCAGATGAACTAATGATGGAGAGAGACTATTGTGATAACTTATGGAGTGACTCTGTACGATACTTTTGGATTCTAATCAGACATTCTTATAGTTCATATGAATGTTTCTTCTTACCTTCAGACTTACACCTTAAATTGATCATGTTAGGTGTAAAGCCTTAACTCTCGTTGTGTTCTTGTGGGAACATATGCCTTAGGGTAGAACGGTGCAAGACCCCTAAGAGCCAAAAATGGCGCTAATCTTTAAACTTAGATTTTGTGCTTTTGCCTCAAGCAAGACGTGTGGTTACTACTTTGCGGCTAAAAACTGTGTTATCTATAGCATTTTTTACTATAAATTTTGAAAATATATTCACATGCTATGAAAACTATTGTTATTATTCAATCAATTTCAGCAAAAAATAACTTTGAGGGACGGAGGGGTCTATTTGGAATGACTTGCTGACTGTTTTAAATACTTTTTTGCCCTTATAAACACTTCAAAAGTTAATCCAAACGCCCCCTAAATTTAAGATTTATCAAATGTACGAACTGAAAGTGTGGGAACCATATTTGTTTTCTTATCTTATTATTTTAATTTATATACAATATATTAGCTTCAAGTCTGTTTTCTGGCTTCTCTATTTTCCTGTTTGCATAATCCTTTTGTACTTCGAGTTCTATTTAATAAAGAAGCTTCTTTTTTTAAAAAAGTCGGTTTTCTGTTACCAATGAATATTCTATTCTTTCATTGTCTAAAAGAAGTAAATGTTACTTATATCATATGGATGAAATTAGTATATACCTTCATCAAATGCAAGAATGATTTGGTAGATTTACAAAGGTTCAATTAGACCTTAAGTTCATATCTTGGTGTAGGGTCATGCTTATGTTTGGAATCACAGGGCTAACTTATTAAATGGCAATGGTACAATTCATGCGAGGAAAACGAAATTTTGTCACTCTCTTGCAGTAGTTCTAGTTCCGTCTAAGCCAGCAAGGAAAGGAGATAATTCTATCATATTTGTGCTTGATTTGTTTTTATGATTAATGTTGCAATGAGATAACGGATTGATAAATTGTGTAGCAGAACAGTTGGCGAAGGACCTTGAGTTATTTGCTCAGCATGCTGGTCGGAAGTCGGTAAATACAGAAGATGTAATACTAACAGGTTAGCATGTCCAATTCCCAAGTTGCTGTTTGTTCTATTAGTCTAGTTATATTTAGTCCATATGCAACAGACTTGAAGTAGTGCTTAATTGCCTAAACCTCTCCGCTTTTGCTTCATTTTGGTCTCAGCCCATAGAAACGAGCATTTAGCTGCCATATTAACATCCATCTGCAATGATCTAAAGACAAAAGAGCCACAGAGTGAAAGAAAGCGTAAAAAGGCACCAAAAAAGGATGATAGAGATAGAGGTGCCGTGCATATTGCTGACGCCTAATCACATCTCCAATCAGGCAGATCTCTAGTTAACAAATGTGCGTACCAACAAGCAAACGCAATAGCTTGTGATCTTTTTCCATTTCTTGGTTATACTAATTGGTAAAACCATTTTCGCATCATAGGGCATATGGAGTTCTTCTGATTCAAAGGAAAAGCTTCTGCATCATGCAATTCATTGAAGTGTCCCAAATGCAGAAACATGCATTTTGGTTTGCTTTAGGCATTTGAGATTGTCAAAAAGCGTTTGGTTTAGTGTTTATTAGCAGTTTTAGTTGCAAACAGGAAATTGCTCTTTGTACATCGACAGCACACTTTTATAGTTAAAACTAGTTAGTGCTAAGGAGTTTGATATTGTGAGATCATAAATCATGTCCATCGTGCAAATTTAATCCTAGTTCTGCATTGAGTAGAATGGTTCAGCCCTCTCTTTCTCTCTTGCTTTTCTCTTGAAAAAAAGAACCAATTCATCTTATTAATATATATTTCGAGCAGCTAAGATATGTTAGAGCTGATGTAGGGATGAAGTTGGGTGTGCTCAACCAAAAT

mRNA sequence

ATGGAAACTGGAATGGAAGAAGACGACTCCGCTTCCGAACTCTTGAGGGACAGGTTCCGGCTCTCCTCTATTTCTATCGCTGAAGCTGAAGCGAATAAAAGCGGCATGGAAATTTCTGAACCTGTGATGACTTGTGTTGCTGATTTAGCATTCAAATATACAAAACAGTTGGCGAAGGACCTTGAGTTATTTGCTCAGCATGCTGGTCGGAAGTCGGTAAATACAGAAGATGTAATACTAACAGCCCATAGAAACGAGCATTTAGCTGCCATATTAACATCCATCTGCAATGATCTAAAGACAAAAGAGCCACAGAGTGAAAGAAAGCGTAAAAAGGCACCAAAAAAGGATGATAGAGATAGAGGTGCCGTGCATATTGCTGACGCCTAA

Coding sequence (CDS)

ATGGAAACTGGAATGGAAGAAGACGACTCCGCTTCCGAACTCTTGAGGGACAGGTTCCGGCTCTCCTCTATTTCTATCGCTGAAGCTGAAGCGAATAAAAGCGGCATGGAAATTTCTGAACCTGTGATGACTTGTGTTGCTGATTTAGCATTCAAATATACAAAACAGTTGGCGAAGGACCTTGAGTTATTTGCTCAGCATGCTGGTCGGAAGTCGGTAAATACAGAAGATGTAATACTAACAGCCCATAGAAACGAGCATTTAGCTGCCATATTAACATCCATCTGCAATGATCTAAAGACAAAAGAGCCACAGAGTGAAAGAAAGCGTAAAAAGGCACCAAAAAAGGATGATAGAGATAGAGGTGCCGTGCATATTGCTGACGCCTAA

Protein sequence

METGMEEDDSASELLRDRFRLSSISIAEAEANKSGMEISEPVMTCVADLAFKYTKQLAKDLELFAQHAGRKSVNTEDVILTAHRNEHLAAILTSICNDLKTKEPQSERKRKKAPKKDDRDRGAVHIADA

Homology

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BLAST of CsaV3_1G009910 vs. NCBI nr
Match: XP_004154006.1 (PREDICTED: centromere protein S isoform X2 [Cucumis sativus] >XP_004154007.1 PREDICTED: centromere protein S isoform X2 [Cucumis sativus] >KGN64440.1 hypothetical protein Csa_1G051770 [Cucumis sativus])

HSP 1 Score: 247.7 bits (631), Expect = 2.2e-62
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 1   METGMEEDDSASELLRDRFRLSSISIAEAEANKSGMEISEPVMTCVADLAFKYTKQLAKD 60
           METGMEEDDSASELLRDRFRLSSISIAEAEANKSGMEISEPVMTCVADLAFKYTKQLAKD
Sbjct: 1   METGMEEDDSASELLRDRFRLSSISIAEAEANKSGMEISEPVMTCVADLAFKYTKQLAKD 60

Query: 61  LELFAQHAGRKSVNTEDVILTAHRNEHLAAILTSICNDLKTKEPQSERKRKKAPKKDDRD 120
           LELFAQHAGRKSVNTEDVILTAHRNEHLAAILTSICNDLKTKEPQSERKRKKAPKKDDRD
Sbjct: 61  LELFAQHAGRKSVNTEDVILTAHRNEHLAAILTSICNDLKTKEPQSERKRKKAPKKDDRD 120

Query: 121 RGAVHIADA 130
           RGAVHIADA
Sbjct: 121 RGAVHIADA 129

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BLAST of CsaV3_1G009910 vs. NCBI nr
Match: XP_011652290.1 (PREDICTED: centromere protein S isoform X1 [Cucumis sativus] >XP_011652296.1 PREDICTED: centromere protein S isoform X1 [Cucumis sativus])

HSP 1 Score: 241.5 bits (615), Expect = 1.6e-60
Identity = 128/130 (98.46%), Postives = 129/130 (99.23%), Query Frame = 0


Query: 1   METGMEEDDSASELLRDRFRLSSISIAEAEANKSGMEISEPVMTCVADLAFKY-TKQLAK 60
           METGMEEDDSASELLRDRFRLSSISIAEAEANKSGMEISEPVMTCVADLAFKY T+QLAK
Sbjct: 1   METGMEEDDSASELLRDRFRLSSISIAEAEANKSGMEISEPVMTCVADLAFKYTTEQLAK 60

Query: 61  DLELFAQHAGRKSVNTEDVILTAHRNEHLAAILTSICNDLKTKEPQSERKRKKAPKKDDR 120
           DLELFAQHAGRKSVNTEDVILTAHRNEHLAAILTSICNDLKTKEPQSERKRKKAPKKDDR
Sbjct: 61  DLELFAQHAGRKSVNTEDVILTAHRNEHLAAILTSICNDLKTKEPQSERKRKKAPKKDDR 120

Query: 121 DRGAVHIADA 130
           DRGAVHIADA
Sbjct: 121 DRGAVHIADA 130

[Close]

BLAST of CsaV3_1G009910 vs. NCBI nr
Match: XP_008440159.1 (PREDICTED: centromere protein S isoform X2 [Cucumis melo])

HSP 1 Score: 238.4 bits (607), Expect = 1.3e-59
Identity = 124/129 (96.12%), Postives = 127/129 (98.45%), Query Frame = 0


Query: 1   METGMEEDDSASELLRDRFRLSSISIAEAEANKSGMEISEPVMTCVADLAFKYTKQLAKD 60
           MET MEEDDSASELLRDRFRLS+ISIAEAEANKSGMEISEPVMTCVADLAFK+TKQLAKD
Sbjct: 1   METRMEEDDSASELLRDRFRLSTISIAEAEANKSGMEISEPVMTCVADLAFKFTKQLAKD 60

Query: 61  LELFAQHAGRKSVNTEDVILTAHRNEHLAAILTSICNDLKTKEPQSERKRKKAPKKDDRD 120
           LELFAQHAGRKSVNTEDVILTAHRNEHLAAILTSICNDLK KEPQSERKRKKAPKKDDRD
Sbjct: 61  LELFAQHAGRKSVNTEDVILTAHRNEHLAAILTSICNDLKAKEPQSERKRKKAPKKDDRD 120

Query: 121 RGAVHIADA 130
           RGAVHIA+A
Sbjct: 121 RGAVHIAEA 129

[Close]

BLAST of CsaV3_1G009910 vs. NCBI nr
Match: XP_008440142.1 (PREDICTED: centromere protein S isoform X1 [Cucumis melo])

HSP 1 Score: 232.3 bits (591), Expect = 9.6e-58
Identity = 123/130 (94.62%), Postives = 127/130 (97.69%), Query Frame = 0


Query: 1   METGMEEDDSASELLRDRFRLSSISIAEAEANKSGMEISEPVMTCVADLAFKY-TKQLAK 60
           MET MEEDDSASELLRDRFRLS+ISIAEAEANKSGMEISEPVMTCVADLAFK+ T+QLAK
Sbjct: 1   METRMEEDDSASELLRDRFRLSTISIAEAEANKSGMEISEPVMTCVADLAFKFTTEQLAK 60

Query: 61  DLELFAQHAGRKSVNTEDVILTAHRNEHLAAILTSICNDLKTKEPQSERKRKKAPKKDDR 120
           DLELFAQHAGRKSVNTEDVILTAHRNEHLAAILTSICNDLK KEPQSERKRKKAPKKDDR
Sbjct: 61  DLELFAQHAGRKSVNTEDVILTAHRNEHLAAILTSICNDLKAKEPQSERKRKKAPKKDDR 120

Query: 121 DRGAVHIADA 130
           DRGAVHIA+A
Sbjct: 121 DRGAVHIAEA 130

[Close]

BLAST of CsaV3_1G009910 vs. NCBI nr
Match: XP_022137214.1 (protein MHF1 homolog [Momordica charantia] >XP_022137215.1 protein MHF1 homolog [Momordica charantia])

HSP 1 Score: 212.2 bits (539), Expect = 1.0e-51
Identity = 111/130 (85.38%), Postives = 121/130 (93.08%), Query Frame = 0


Query: 1   METGMEEDDSASELLRDRFRLSSISIAEAEANKSGMEISEPVMTCVADLAFKY-TKQLAK 60
           METG EEDD+A+ELL DRFRLS+ISIAEAEA ++GMEISEPVMTCVA+LAFKY T+QLAK
Sbjct: 1   METGREEDDTATELLSDRFRLSTISIAEAEAKRNGMEISEPVMTCVAELAFKYTTEQLAK 60

Query: 61  DLELFAQHAGRKSVNTEDVILTAHRNEHLAAILTSICNDLKTKEPQSERKRKKAPKKDDR 120
           DLELFAQHAGRKSVNTEDVIL+AHRNEHLAA LTS CNDLKTKEPQ+ERKRKKA KK+DR
Sbjct: 61  DLELFAQHAGRKSVNTEDVILSAHRNEHLAASLTSFCNDLKTKEPQTERKRKKASKKEDR 120

Query: 121 DRGAVHIADA 130
           DRG VHI DA
Sbjct: 121 DRGVVHINDA 130

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BLAST of CsaV3_1G009910 vs. TAIR10
Match: AT5G50930.1 (Histone superfamily protein)

HSP 1 Score: 152.5 bits (384), Expect = 1.8e-37
Identity = 79/114 (69.30%), Postives = 97/114 (85.09%), Query Frame = 0


Query: 7   EDDSASELLRDRFRLSSISIAEAEANKSGMEISEPVMTCVADLAFKYTKQLAKDLELFAQ 66
           E+ S  +L+RDRFRLS+ISIAEAEA K+GMEI  PV+ CVADLAFKY + +AKDLELFA 
Sbjct: 116 EEYSMDDLIRDRFRLSAISIAEAEAKKNGMEIGGPVVACVADLAFKYAENVAKDLELFAH 175

Query: 67  HAGRKSVNTEDVILTAHRNEHLAAILTSICNDLKTKEPQSERKRKK-APKKDDR 120
           HAGRK VN +DV+L+AHRN++LAA L S+CN+LK KEPQSERKRKK + KK+D+
Sbjct: 176 HAGRKVVNMDDVVLSAHRNDNLAASLRSLCNELKAKEPQSERKRKKGSAKKEDK 229

[Close]

BLAST of CsaV3_1G009910 vs. Swiss-Prot
Match: sp|Q9FI55|CENPS_ARATH (Protein MHF1 homolog OS=Arabidopsis thaliana OX=3702 GN=MHF1 PE=3 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 3.2e-36
Identity = 79/114 (69.30%), Postives = 97/114 (85.09%), Query Frame = 0


Query: 7   EDDSASELLRDRFRLSSISIAEAEANKSGMEISEPVMTCVADLAFKYTKQLAKDLELFAQ 66
           E+ S  +L+RDRFRLS+ISIAEAEA K+GMEI  PV+ CVADLAFKY + +AKDLELFA 
Sbjct: 116 EEYSMDDLIRDRFRLSAISIAEAEAKKNGMEIGGPVVACVADLAFKYAENVAKDLELFAH 175

Query: 67  HAGRKSVNTEDVILTAHRNEHLAAILTSICNDLKTKEPQSERKRKK-APKKDDR 120
           HAGRK VN +DV+L+AHRN++LAA L S+CN+LK KEPQSERKRKK + KK+D+
Sbjct: 176 HAGRKVVNMDDVVLSAHRNDNLAASLRSLCNELKAKEPQSERKRKKGSAKKEDK 229

[Close]

BLAST of CsaV3_1G009910 vs. Swiss-Prot
Match: sp|Q2TBR7|CENPS_BOVIN (Centromere protein S OS=Bos taurus OX=9913 GN=CENPS PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.3e-08
Identity = 35/104 (33.65%), Postives = 58/104 (55.77%), Query Frame = 0


Query: 26  IAEAEANKSGMEISEPVMTCVADLAFKYTKQLAKDLELFAQHAGRKSVNTEDVILTAHRN 85
           + E  A+   M+ S+  +  ++++ F   +  AKDLE+FA+HA R ++NTEDV L A R+
Sbjct: 30  LCEEVASDKDMQFSKQTIAAISEVTFGQCENFAKDLEMFARHAKRSTINTEDVKLLARRS 89

Query: 86  EHLAAILTSICNDLKTKEPQSERKRKKAPKKDDRDRGAVHIADA 130
             L   +T    D+   +   E+K KK    +D +R +V  A+A
Sbjct: 90  HSLLKYITEKNEDI--AQLNLEKKAKKXXXLEDENRNSVESAEA 131

[Close]

BLAST of CsaV3_1G009910 vs. Swiss-Prot
Match: sp|Q8N2Z9|CENPS_HUMAN (Centromere protein S OS=Homo sapiens OX=9606 GN=CENPS PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.4e-07
Identity = 38/128 (29.69%), Postives = 66/128 (51.56%), Query Frame = 0


Query: 2   ETGMEEDDSASELLRDRFRLSSISIAEAEANKSGMEISEPVMTCVADLAFKYTKQLAKDL 61
           ET  ++  S  + L+     +   + E  A    M+ S+  +  +++L F+  +  AKDL
Sbjct: 6   ETEEQQRFSYQQRLKAAVHYTVGCLCEEVALDKEMQFSKQTIAAISELTFRQCENFAKDL 65

Query: 62  ELFAQHAGRKSVNTEDVILTAHRNEHLAAILTSICNDLKTKEPQSERKRKKAPKKDDRDR 121
           E+FA+HA R ++NTEDV L A R+  L   +T    ++   +   ERK +K  K +D  +
Sbjct: 66  EMFARHAKRTTINTEDVKLLARRSNSLLKYITDKSEEI--AQINLERKAQKKKKSEDGSK 125

Query: 122 GAVHIADA 130
            +   A+A
Sbjct: 126 NSRQPAEA 131

[Close]

BLAST of CsaV3_1G009910 vs. Swiss-Prot
Match: sp|Q9D084|CENPS_MOUSE (Centromere protein S OS=Mus musculus OX=10090 GN=Cenps PE=2 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.0e-06
Identity = 30/92 (32.61%), Postives = 51/92 (55.43%), Query Frame = 0


Query: 28  EAEANKSGMEISEPVMTCVADLAFKYTKQLAKDLELFAQHAGRKSVNTEDVILTAHRNEH 87
           E   NK  +  S+  +  ++++ F+  +  AKDLE+FA+HA R +V TEDV L A RN  
Sbjct: 32  EVTLNKQ-VNFSKQTIAAISEVTFRQCENFAKDLEMFARHAKRSTVTTEDVKLLARRNNS 91

Query: 88  LAAILTSICNDLKTKEPQSERKRKKAPKKDDR 120
           L   +T    ++     + + K+K+ P+ + R
Sbjct: 92  LLKYITEKNEEIAQLNLKGKAKKKRKPEDESR 122

[Close]

BLAST of CsaV3_1G009910 vs. Swiss-Prot
Match: sp|Q6NRI8|CENPS_XENLA (Centromere protein S OS=Xenopus laevis OX=8355 GN=cenps PE=2 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.0e-06
Identity = 31/98 (31.63%), Postives = 55/98 (56.12%), Query Frame = 0


Query: 1  METGMEEDDSASELLRDRFRLSSISIAEAEANKSGMEISEPVMTCVADLAFKYTKQLAKD 60
          M  G EE  S ++ L+        S+ +  A+   ++ S+  +  ++++ F+  +  AKD
Sbjct: 1  MAEGQEEHFSRTQRLKAAVHYVVGSLCQEVADDKEIDFSKQAIAAISEITFRQCESFAKD 60

Query: 61 LELFAQHAGRKSVNTEDVILTAHRNEHLAAILTSICND 99
          LE+FA+HA R ++N +DV L A R+  L A + S C+D
Sbjct: 61 LEIFARHAKRTTINMDDVKLLARRSRSLYAHI-SKCSD 97

[Close]

BLAST of CsaV3_1G009910 vs. TrEMBL
Match: tr|A0A0A0LR97|A0A0A0LR97_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G051770 PE=4 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 1.5e-62
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 1   METGMEEDDSASELLRDRFRLSSISIAEAEANKSGMEISEPVMTCVADLAFKYTKQLAKD 60
           METGMEEDDSASELLRDRFRLSSISIAEAEANKSGMEISEPVMTCVADLAFKYTKQLAKD
Sbjct: 1   METGMEEDDSASELLRDRFRLSSISIAEAEANKSGMEISEPVMTCVADLAFKYTKQLAKD 60

Query: 61  LELFAQHAGRKSVNTEDVILTAHRNEHLAAILTSICNDLKTKEPQSERKRKKAPKKDDRD 120
           LELFAQHAGRKSVNTEDVILTAHRNEHLAAILTSICNDLKTKEPQSERKRKKAPKKDDRD
Sbjct: 61  LELFAQHAGRKSVNTEDVILTAHRNEHLAAILTSICNDLKTKEPQSERKRKKAPKKDDRD 120

Query: 121 RGAVHIADA 130
           RGAVHIADA
Sbjct: 121 RGAVHIADA 129

[Close]

BLAST of CsaV3_1G009910 vs. TrEMBL
Match: tr|A0A1S3B173|A0A1S3B173_CUCME (centromere protein S isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484694 PE=4 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 8.9e-60
Identity = 124/129 (96.12%), Postives = 127/129 (98.45%), Query Frame = 0


Query: 1   METGMEEDDSASELLRDRFRLSSISIAEAEANKSGMEISEPVMTCVADLAFKYTKQLAKD 60
           MET MEEDDSASELLRDRFRLS+ISIAEAEANKSGMEISEPVMTCVADLAFK+TKQLAKD
Sbjct: 1   METRMEEDDSASELLRDRFRLSTISIAEAEANKSGMEISEPVMTCVADLAFKFTKQLAKD 60

Query: 61  LELFAQHAGRKSVNTEDVILTAHRNEHLAAILTSICNDLKTKEPQSERKRKKAPKKDDRD 120
           LELFAQHAGRKSVNTEDVILTAHRNEHLAAILTSICNDLK KEPQSERKRKKAPKKDDRD
Sbjct: 61  LELFAQHAGRKSVNTEDVILTAHRNEHLAAILTSICNDLKAKEPQSERKRKKAPKKDDRD 120

Query: 121 RGAVHIADA 130
           RGAVHIA+A
Sbjct: 121 RGAVHIAEA 129

[Close]

BLAST of CsaV3_1G009910 vs. TrEMBL
Match: tr|A0A1S3B159|A0A1S3B159_CUCME (centromere protein S isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484694 PE=4 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 6.4e-58
Identity = 123/130 (94.62%), Postives = 127/130 (97.69%), Query Frame = 0


Query: 1   METGMEEDDSASELLRDRFRLSSISIAEAEANKSGMEISEPVMTCVADLAFKY-TKQLAK 60
           MET MEEDDSASELLRDRFRLS+ISIAEAEANKSGMEISEPVMTCVADLAFK+ T+QLAK
Sbjct: 1   METRMEEDDSASELLRDRFRLSTISIAEAEANKSGMEISEPVMTCVADLAFKFTTEQLAK 60

Query: 61  DLELFAQHAGRKSVNTEDVILTAHRNEHLAAILTSICNDLKTKEPQSERKRKKAPKKDDR 120
           DLELFAQHAGRKSVNTEDVILTAHRNEHLAAILTSICNDLK KEPQSERKRKKAPKKDDR
Sbjct: 61  DLELFAQHAGRKSVNTEDVILTAHRNEHLAAILTSICNDLKAKEPQSERKRKKAPKKDDR 120

Query: 121 DRGAVHIADA 130
           DRGAVHIA+A
Sbjct: 121 DRGAVHIAEA 130

[Close]

BLAST of CsaV3_1G009910 vs. TrEMBL
Match: tr|A0A2P6P4K1|A0A2P6P4K1_ROSCH (Putative transcription factor Hap3/NF-YB family OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0188741 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 8.4e-42
Identity = 94/124 (75.81%), Postives = 106/124 (85.48%), Query Frame = 0


Query: 6   EEDDSASELLRDRFRLSSISIAEAEANKSGMEISEPVMTCVADLAFKYTKQLAKDLELFA 65
           EEDDS SE+LRDRFRLS+ISIAEAEA +SGMEISEPV+ C++DLAFK+T+QLAKDLELF 
Sbjct: 4   EEDDSVSEVLRDRFRLSTISIAEAEAKRSGMEISEPVVACISDLAFKFTEQLAKDLELFT 63

Query: 66  QHAGRKSVNTEDVILTAHRNEHLAAILTSICNDLKTKEPQSERKRKKAPKKDDR-DRGAV 125
           QHAGRKS N EDVIL AHRNEHLAA+L S  +DLK KEPQS+RKRKKA KKDDR     V
Sbjct: 64  QHAGRKSANMEDVILCAHRNEHLAALLRSYRDDLKAKEPQSDRKRKKASKKDDRAPEDIV 123

Query: 126 HIAD 129
           H+ D
Sbjct: 124 HVPD 127

[Close]

BLAST of CsaV3_1G009910 vs. TrEMBL
Match: tr|A0A2G9HE54|A0A2G9HE54_9LAMI (Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_11536 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 1.9e-41
Identity = 91/124 (73.39%), Postives = 108/124 (87.10%), Query Frame = 0


Query: 6   EEDDSASELLRDRFRLSSISIAEAEANKSGMEISEPVMTCVADLAFKYTKQLAKDLELFA 65
           EE++SA+ELLRDRFRL +ISIAEAEA ++GME+S+P++ C++DLAFKY +QLAKDLELFA
Sbjct: 10  EEEESATELLRDRFRLCTISIAEAEAKQNGMEVSQPIVACISDLAFKYAQQLAKDLELFA 69

Query: 66  QHAGRKSVNTEDVILTAHRNEHLAAILTSICNDLKTKEPQSERKRKKAPKKDDRDRGAV- 125
           QHAGRKSVN EDVIL+AHRN+HLAA L S CNDLK KEPQSERKRKK PK +D+    V 
Sbjct: 70  QHAGRKSVNMEDVILSAHRNDHLAASLRSFCNDLKAKEPQSERKRKKNPKNEDKAAVEVL 129

Query: 126 HIAD 129
           HIAD
Sbjct: 130 HIAD 133

The following BLAST results are available for this feature:

BLAST of CsaV3_1G009910 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004154006.1	2.2e-62	100.00	PREDICTED: centromere protein S isoform X2 [Cucumis sativus] >XP_004154007.1 PRE...	[more]
XP_011652290.1	1.6e-60	98.46	PREDICTED: centromere protein S isoform X1 [Cucumis sativus] >XP_011652296.1 PRE...	[more]
XP_008440159.1	1.3e-59	96.12	PREDICTED: centromere protein S isoform X2 [Cucumis melo]	[more]
XP_008440142.1	9.6e-58	94.62	PREDICTED: centromere protein S isoform X1 [Cucumis melo]	[more]
XP_022137214.1	1.0e-51	85.38	protein MHF1 homolog [Momordica charantia] >XP_022137215.1 protein MHF1 homolog ...	[more]

BLAST of CsaV3_1G009910 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G50930.1	1.8e-37	69.30	Histone superfamily protein	[more]

BLAST of CsaV3_1G009910 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FI55\|CENPS_ARATH	3.2e-36	69.30	Protein MHF1 homolog OS=Arabidopsis thaliana OX=3702 GN=MHF1 PE=3 SV=1	[more]
sp\|Q2TBR7\|CENPS_BOVIN	1.3e-08	33.65	Centromere protein S OS=Bos taurus OX=9913 GN=CENPS PE=2 SV=1	[more]
sp\|Q8N2Z9\|CENPS_HUMAN	2.4e-07	29.69	Centromere protein S OS=Homo sapiens OX=9606 GN=CENPS PE=1 SV=1	[more]
sp\|Q9D084\|CENPS_MOUSE	2.0e-06	32.61	Centromere protein S OS=Mus musculus OX=10090 GN=Cenps PE=2 SV=1	[more]
sp\|Q6NRI8\|CENPS_XENLA	2.0e-06	31.63	Centromere protein S OS=Xenopus laevis OX=8355 GN=cenps PE=2 SV=1	[more]

BLAST of CsaV3_1G009910 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LR97\|A0A0A0LR97_CUCSA	1.5e-62	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G051770 PE=4 SV=1	[more]
tr\|A0A1S3B173\|A0A1S3B173_CUCME	8.9e-60	96.12	centromere protein S isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484694 PE=4 SV=...	[more]
tr\|A0A1S3B159\|A0A1S3B159_CUCME	6.4e-58	94.62	centromere protein S isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484694 PE=4 SV=...	[more]
tr\|A0A2P6P4K1\|A0A2P6P4K1_ROSCH	8.4e-42	75.81	Putative transcription factor Hap3/NF-YB family OS=Rosa chinensis OX=74649 GN=Rc...	[more]
tr\|A0A2G9HE54\|A0A2G9HE54_9LAMI	1.9e-41	73.39	Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_11536 P...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0071821	FANCM-MHF complex

Vocabulary: **Molecular Function**
Term	Definition
GO:0046982	protein heterodimerization activity

Vocabulary: **INTERPRO**
Term	Definition
IPR029003	CENP-S/Mhf1
IPR009072	Histone-fold

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0007129	synapsis
biological_process	GO:0006457	protein folding
biological_process	GO:0017009	protein-phycocyanobilin linkage
cellular_component	GO:0071821	FANCM-MHF complex
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0030246	carbohydrate binding
molecular_function	GO:0016829	lyase activity
molecular_function	GO:0051082	unfolded protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G009910.1	CsaV3_1G009910.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 1..112 e-value: 4.6E-28 score: 99.7
IPR009072	Histone-fold	SUPERFAMILY	SSF47113	Histone-fold	coord: 34..88
IPR029003	CENP-S/Mhf1	PFAM	PF15630	CENP-S	coord: 22..88 e-value: 1.8E-18 score: 66.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 101..129
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 99..129
None	No IPR available	PANTHER	PTHR22980:SF0	CENTROMERE PROTEIN S	coord: 6..118
None	No IPR available	PANTHER	PTHR22980	CORTISTATIN	coord: 6..118

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_1G009910	CSPI01G09860	Wild cucumber (PI 183967)	cpicucB001
CsaV3_1G009910	Cucsa.134740	Cucumber (Gy14) v1	cgycucB196
CsaV3_1G009910	CmaCh18G002910	Cucurbita maxima (Rimu)	cmacucB0474
CsaV3_1G009910	CmoCh18G002390	Cucurbita moschata (Rifu)	cmocucB0457
CsaV3_1G009910	Cp4.1LG09g09290	Cucurbita pepo (Zucchini)	cpecucB0031
CsaV3_1G009910	CsGy1G009880	Cucumber (Gy14) v2	cgybcucB002
CsaV3_1G009910	Carg06818	Silver-seed gourd	carcucB0529
CsaV3_1G009910	ClCG03G004020	Watermelon (Charleston Gray)	cucwcgB038
CsaV3_1G009910	Lsi02G005280	Bottle gourd (USVL1VR-Ls)	cuclsiB022
CsaV3_1G009910	MELO3C035737.2	Melon (DHL92) v3.6.1	cucmedB022
CsaV3_1G009910	Cla97C03G055200	Watermelon (97103) v2	cucwmbB030
CsaV3_1G009910	Bhi08G001261	Wax gourd	cucwgoB035

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G009910	Cucumber (Chinese Long) v3	cuccucB003
CsaV3_1G009910	Silver-seed gourd	carcucB1046
CsaV3_1G009910	Cucumber (Gy14) v2	cgybcucB011
CsaV3_1G009910	Cucumber (Gy14) v1	cgycucB237
CsaV3_1G009910	Cucurbita maxima (Rimu)	cmacucB0124
CsaV3_1G009910	Cucurbita maxima (Rimu)	cmacucB0235
CsaV3_1G009910	Cucurbita moschata (Rifu)	cmocucB0110
CsaV3_1G009910	Cucurbita moschata (Rifu)	cmocucB0222
CsaV3_1G009910	Cucurbita pepo (Zucchini)	cpecucB0634
CsaV3_1G009910	Cucurbita pepo (Zucchini)	cpecucB0808
CsaV3_1G009910	Wild cucumber (PI 183967)	cpicucB015
CsaV3_1G009910	Bottle gourd (USVL1VR-Ls)	cuclsiB077
CsaV3_1G009910	Melon (DHL92) v3.5.1	cucmeB024
CsaV3_1G009910	Melon (DHL92) v3.5.1	cucmeB051
CsaV3_1G009910	Melon (DHL92) v3.6.1	cucmedB048
CsaV3_1G009910	Watermelon (Charleston Gray)	cucwcgB080
CsaV3_1G009910	Watermelon (97103) v1	cucwmB013
CsaV3_1G009910	Watermelon (97103) v1	cucwmB098
CsaV3_1G009910	Watermelon (97103) v2	cucwmbB071