CSPI01G09860 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G09860
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Centromere protein S
Location	Chr1 : 6170972 .. 6173895 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAAAATAAATGCGAAATGGCAAAAGGTAAATTGTAAGCAATGGAAACTGGAATGGAAGAAGACGACTCCGCTTCCGAACTCTTGAGGGACAGGTTCCGGCTCTCCTCTATTTCTATCGCTGAAGCTGAAGGTTAACGTCATCTCCACTCCCGATTACTGAATGCTAGTTCCATCTTTTCTTACTTTTTGTTTCTCTTACTCTTCTGTCCAACTGTTTGGTTTGTTTTGCAGCGAATAAAAGCGGCATGGAAATTTCTGAACCTGTGATGACTTGTGTTGCTGATTTAGCATTCAAATATACAAGTTTGTTTACCTCGCTTTTCTGCCTGTTTTGAGTCTGGAGTGTTATTTTTAGTGATTTGTACTTCCATTCTTCATTATGTTCATAATCTAATTGCTTATTATTTTAATTTTACTTCTCTTCTACCTGTGCTTCCATCAATTTTAGGTAGCTTATTTGTGATTTCAACTATATATTTCTTTACTCTTTGCCATGCATTCGGTTTTGTTAGGAGAGGACGCCTCTCTGTGCTTTGTTGTTAAGTTGTGTGACCTAGTTGGAAGGAAACTGCATTACTTTGGTCAAGTTTAAGAGAGTAAAAATTAACTTTGAGAGAAGTTTCCAGATGAACTAATGATGGAGAGAGACTATTGTGATAACTTATGGAGTGACTCTGTACGATACTTTTGGATTCTAATCAGACATTCTTATAGTTCATATGAATGTTTCTTCTTACCTTCAGACTTACACCTTAAATTGATCATGTTAGGTGTAAAGCCTTAACTCTCGTTGTGTTCTTGTGGGAACATATGCCTTAGGGTAGAACGGTGCAAGACCCCTAAGAGCCAAAAATGGCGCTAATCTTTAAACTTAGATTTTGTTGCCTCAAGCAAGACGTGTGGTTACTACTTTGCGGCTAAAAACTGTGTTATCTATAGCATTTTTTACTATAAATTTTGAAAATATATTCACATGCTATGAAAACTATTGTTATTATTCAATCAATTTCAGCAAAAAATAACTTTGAGGGACGGAGGGGTCTATTTGGAATGACTTGCCGAGTGTTTTAAATACTTTTTTGCCCTTATAAACACTTAAAAAGTTAATCCAAACGCCCCCTAAATTTAAGATTTATCAAATGTACGAACTGAAAGTGTGGGAACCATATTTGTTTTCTTATCTTATTATTTTAATTTATATACAATATATTAGCTTCAAGTCTGTTTTCTGGCTTCTCTATTTTCCTGTTTGCATAATCCTTTTGTACTTCGAGTTCTATTTAATAAAGAAGCTTCTTTTTTAAAAAAAAGTCGGTTTTCTGTTACCAATGAATATTCTATTCTTTCATTGTCTAAAAGAAGTAAATGTTACTTATATCATATGGATGAAATTAGTATATACCTTCATCAAATGCATGAATGATTTGGTAGATTTACAAAGGTTCAATTAGACCTTAAGTTCATATCTTGGTGTAGGGTCATGCTTATGTTTGGAATCACAGGGCTAACTTATTAAATGGCAATGGTACAATTCATGCGAGGAAAACGAAATTTTGTCACTCTCTTGCAGTAGTTCTAGTTCCGTCTAAGCCAGCAAGGAAAGAAGATAATTCTATCATATTTGTGCTTGATTTGTTTTTATGATTAATGTTGCAATGAGATAACGGATTGATAAATTGTGTAGCAGAACAGTTGGCGAAGGACCTTGAGTTATTTGCTCAGCATGCTGGTCGGAAGTCGGTAAATACAGAAGATGTAATACTAACAGGTTAGCATGTCCAATTCCCAAGTTGCTGTTTGTTCTATTAGTCTAGTTATATTTAGTCCATATGCAACAGACTTGAAGTAGTGCTTAATTGCCTAAACCTCTCCGCTTTTGCTTCATTTTGGTCTCAGCCCATAGAAACGAGCATTTAGCTGCCATATTAACATCCATCTGCAATGATCTAAAGACAAAAGAGCCACAAAGTGAAAGAAAGCGTAAAAAGGCACCAAAAAAGGATGATAGAGATAGAGGTGCCGTGCATATTGCTGACGCCTAATCACATCTCCAATCAGGCAGATCTCTAGTTAACAAATGTGCGTACCAACAAGCAAACGCAATAGCTTGTGATATTTTTCCATTTCTTGGTTATACTAATTGGTAAAACCATTTTCGCATCATAGGGCATATGGAGTTCTTCTGATTCAAAGGAAAAGCTTCTGTATCATGCAATTCATTGAAGTGTCCCAAATGCAGAAACATGCATTTTGGTTTGCTTTAGGCATTTGAGATTGTCAAAAAGCGTTTGGTTTAGTGTTTCTTAGCAGTTTTAGTTGCAAACAGGAAATTGCTCTTTGTACATCGACAGCACACTTTTATAGTTAAAACTAGTTAGTGCTAAGGAGTTTGATATTGTGAGATCATAAATCATGTCCATCGTGCAAATTTAATCCTAGTTCTGCATTGAGTAGAATGGTTCAGCCCTCTCTTTCTCTCTTGCTTTTCTCTTGAAAAAAAGAACCAATTCATCTTATTAATATATATTTCGAGCAGCTAAGATATGTTAGAGCTGATGTAGGGATGAAGTTGGGTGTGCTCAACCAAAATGGATGAAAACATAGAGTGAAATTATCTAATCTTTTGATTAGTGATGATTCAGAAGGATGAGATTATCAAGTTACGACCTCTTGACTAATGCAATCCACTTTTTTTCTGAAACATGGAATAGTTACACAAACCGCAACTTTAAATTGTGACAATCATCTCAACAACAAGTCAATGCACATAATATTCCAGAAGATTTTACTTCTGAGTCAACAATGGAGTCAATTACTTGATGAACAACAGAGAACTCAGCCTAAGAAGAAAAAAAAGCAAGGTAGAATCTGATTGAAATGGTTCAGTTTGTCAAAGGACAAGTATTCTTTACTTGTCTAGCAG

mRNA sequence

ATGGAAACTGGAATGGAAGAAGACGACTCCGCTTCCGAACTCTTGAGGGACAGGTTCCGGCTCTCCTCTATTTCTATCGCTGAAGCTGAAGCGAATAAAAGCGGCATGGAAATTTCTGAACCTGTGATGACTTGTGTTGCTGATTTAGCATTCAAATATACAAAACAGTTGGCGAAGGACCTTGAGTTATTTGCTCAGCATGCTGGTCGGAAGTCGGTAAATACAGAAGATGTAATACTAACAGCCCATAGAAACGAGCATTTAGCTGCCATATTAACATCCATCTGCAATGATCTAAAGACAAAAGAGCCACAAAGTGAAAGAAAGCGTAAAAAGGCACCAAAAAAGGATGATAGAGATAGAGGTGCCGTGCATATTGCTGACGCCTAA

Coding sequence (CDS)

ATGGAAACTGGAATGGAAGAAGACGACTCCGCTTCCGAACTCTTGAGGGACAGGTTCCGGCTCTCCTCTATTTCTATCGCTGAAGCTGAAGCGAATAAAAGCGGCATGGAAATTTCTGAACCTGTGATGACTTGTGTTGCTGATTTAGCATTCAAATATACAAAACAGTTGGCGAAGGACCTTGAGTTATTTGCTCAGCATGCTGGTCGGAAGTCGGTAAATACAGAAGATGTAATACTAACAGCCCATAGAAACGAGCATTTAGCTGCCATATTAACATCCATCTGCAATGATCTAAAGACAAAAGAGCCACAAAGTGAAAGAAAGCGTAAAAAGGCACCAAAAAAGGATGATAGAGATAGAGGTGCCGTGCATATTGCTGACGCCTAA

Homology

[Close]

BLAST of CSPI01G09860 vs. Swiss-Prot
Match: CENPS_BOVIN (Centromere protein S OS=Bos taurus GN=APITD1 PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.5e-09
Identity = 36/104 (34.62%), Postives = 59/104 (56.73%), Query Frame = 1


Query: 26  IAEAEANKSGMEISEPVMTCVADLAFKYTKQLAKDLELFAQHAGRKSVNTEDVILTAHRN 85
           + E  A+   M+ S+  +  ++++ F   +  AKDLE+FA+HA R ++NTEDV L A R+
Sbjct: 30  LCEEVASDKDMQFSKQTIAAISEVTFGQCENFAKDLEMFARHAKRSTINTEDVKLLARRS 89

Query: 86  EHLAAILTSICNDLKTKEPQSERKRKKAPKKDDRDRGAVHIADA 130
             L   +T    D+   +   E+K KK  K +D +R +V  A+A
Sbjct: 90  HSLLKYITEKNEDI--AQLNLEKKAKKKKKLEDENRNSVESAEA 131

[Close]

BLAST of CSPI01G09860 vs. Swiss-Prot
Match: CENPS_XENLA (Centromere protein S OS=Xenopus laevis GN=apitd1 PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.8e-07
Identity = 31/112 (27.68%), Postives = 61/112 (54.46%), Query Frame = 1


Query: 1   METGMEEDDSASELLRDRFRLSSISIAEAEANKSGMEISEPVMTCVADLAFKYTKQLAKD 60
           M  G EE  S ++ L+        S+ +  A+   ++ S+  +  ++++ F+  +  AKD
Sbjct: 1   MAEGQEEHFSRTQRLKAAVHYVVGSLCQEVADDKEIDFSKQAIAAISEITFRQCESFAKD 60

Query: 61  LELFAQHAGRKSVNTEDVILTAHRNEHLAAILTSICNDLKTKEPQSERKRKK 113
           LE+FA+HA R ++N +DV L A R+  L A ++   +++     + + K+KK
Sbjct: 61  LEIFARHAKRTTINMDDVKLLARRSRSLYAHISKCSDEIAANSLEQKEKKKK 112

[Close]

BLAST of CSPI01G09860 vs. Swiss-Prot
Match: CENPS_HUMAN (Centromere protein S OS=Homo sapiens GN=APITD1 PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.3e-07
Identity = 38/128 (29.69%), Postives = 66/128 (51.56%), Query Frame = 1


Query: 2   ETGMEEDDSASELLRDRFRLSSISIAEAEANKSGMEISEPVMTCVADLAFKYTKQLAKDL 61
           ET  ++  S  + L+     +   + E  A    M+ S+  +  +++L F+  +  AKDL
Sbjct: 6   ETEEQQRFSYQQRLKAAVHYTVGCLCEEVALDKEMQFSKQTIAAISELTFRQCENFAKDL 65

Query: 62  ELFAQHAGRKSVNTEDVILTAHRNEHLAAILTSICNDLKTKEPQSERKRKKAPKKDDRDR 121
           E+FA+HA R ++NTEDV L A R+  L   +T    ++   +   ERK +K  K +D  +
Sbjct: 66  EMFARHAKRTTINTEDVKLLARRSNSLLKYITDKSEEI--AQINLERKAQKKKKSEDGSK 125

Query: 122 GAVHIADA 130
            +   A+A
Sbjct: 126 NSRQPAEA 131

[Close]

BLAST of CSPI01G09860 vs. Swiss-Prot
Match: CENPS_CHICK (Centromere protein S OS=Gallus gallus GN=APITD1 PE=1 SV=2)

HSP 1 Score: 53.9 bits (128), Expect = 1.5e-06
Identity = 29/109 (26.61%), Postives = 59/109 (54.13%), Query Frame = 1


Query: 4   GMEEDDSASELLRDRFRLSSISIAEAEANKSGMEISEPVMTCVADLAFKYTKQLAKDLEL 63
           G E+ +   + LR     ++  + +  A   G+  S+  +  ++++ F+  +  A+DLE+
Sbjct: 5   GGEQRELLIQRLRAAVHYTTGCLCQDVAEDKGVLFSKQTVAAISEITFRQCENFARDLEM 64

Query: 64  FAQHAGRKSVNTEDVILTAHRNEHLAAILTSICNDLKTKEPQSERKRKK 113
           FA+HA R ++ +EDV L A R+  L   +T   ++L +   + + K+KK
Sbjct: 65  FARHAKRSTITSEDVKLLARRSNSLLKYITQKSDELASSNMEQKEKKKK 113

[Close]

BLAST of CSPI01G09860 vs. Swiss-Prot
Match: CENPS_MOUSE (Centromere protein S OS=Mus musculus GN=Apitd1 PE=2 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.0e-06
Identity = 30/92 (32.61%), Postives = 51/92 (55.43%), Query Frame = 1


Query: 28  EAEANKSGMEISEPVMTCVADLAFKYTKQLAKDLELFAQHAGRKSVNTEDVILTAHRNEH 87
           E   NK  +  S+  +  ++++ F+  +  AKDLE+FA+HA R +V TEDV L A RN  
Sbjct: 32  EVTLNKQ-VNFSKQTIAAISEVTFRQCENFAKDLEMFARHAKRSTVTTEDVKLLARRNNS 91

Query: 88  LAAILTSICNDLKTKEPQSERKRKKAPKKDDR 120
           L   +T    ++     + + K+K+ P+ + R
Sbjct: 92  LLKYITEKNEEIAQLNLKGKAKKKRKPEDESR 122

[Close]

BLAST of CSPI01G09860 vs. TrEMBL
Match: A0A0A0LR97_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G051770 PE=4 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 7.9e-63
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 1


Query: 1   METGMEEDDSASELLRDRFRLSSISIAEAEANKSGMEISEPVMTCVADLAFKYTKQLAKD 60
           METGMEEDDSASELLRDRFRLSSISIAEAEANKSGMEISEPVMTCVADLAFKYTKQLAKD
Sbjct: 1   METGMEEDDSASELLRDRFRLSSISIAEAEANKSGMEISEPVMTCVADLAFKYTKQLAKD 60

Query: 61  LELFAQHAGRKSVNTEDVILTAHRNEHLAAILTSICNDLKTKEPQSERKRKKAPKKDDRD 120
           LELFAQHAGRKSVNTEDVILTAHRNEHLAAILTSICNDLKTKEPQSERKRKKAPKKDDRD
Sbjct: 61  LELFAQHAGRKSVNTEDVILTAHRNEHLAAILTSICNDLKTKEPQSERKRKKAPKKDDRD 120

Query: 121 RGAVHIADA 130
           RGAVHIADA
Sbjct: 121 RGAVHIADA 129

[Close]

BLAST of CSPI01G09860 vs. TrEMBL
Match: M5WE31_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017850mg PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 2.2e-41
Identity = 92/125 (73.60%), Postives = 108/125 (86.40%), Query Frame = 1


Query: 6   EEDDSASELLRDRFRLSSISIAEAEANKSGMEISEPVMTCVADLAFKYTKQLAKDLELFA 65
           EE+DS SELLRDRFR+S+ISIAEAEA ++ MEIS PVMTC+ADLAFK+T+QLAKDLELFA
Sbjct: 4   EEEDSVSELLRDRFRVSTISIAEAEAKRNDMEISGPVMTCIADLAFKFTEQLAKDLELFA 63

Query: 66  QHAGRKSVNTEDVILTAHRNEHLAAILTSICNDLKTKEPQSERKRKKAPKKDDR-DRGAV 125
           QHAGRK+ N EDVIL+AHRNEHLAA+L S  NDLK +EPQSERKRKK+ KK+D+     V
Sbjct: 64  QHAGRKTANMEDVILSAHRNEHLAALLRSFSNDLKAREPQSERKRKKSSKKEDQATTSVV 123

Query: 126 HIADA 130
           HI D+
Sbjct: 124 HIPDS 128

[Close]

BLAST of CSPI01G09860 vs. TrEMBL
Match: A0A022QDG1_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a016064mg PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 6.5e-41
Identity = 89/124 (71.77%), Postives = 107/124 (86.29%), Query Frame = 1


Query: 6   EEDDSASELLRDRFRLSSISIAEAEANKSGMEISEPVMTCVADLAFKYTKQLAKDLELFA 65
           EE++SASELLRDRFRL +I+IAEAEA ++GME+S+P+M C++DLAFKY +QLAKDLELFA
Sbjct: 11  EEEESASELLRDRFRLCTIAIAEAEAKQNGMEVSQPIMACISDLAFKYAQQLAKDLELFA 70

Query: 66  QHAGRKSVNTEDVILTAHRNEHLAAILTSICNDLKTKEPQSERKRKKAPKKDDRDRGAV- 125
           QH GRKSVN EDVIL+AHRN+HL+A L S CNDLK KEPQS+RKRKK  KK+D+    V 
Sbjct: 71  QHGGRKSVNMEDVILSAHRNDHLSASLRSFCNDLKAKEPQSDRKRKKNTKKEDKAAADVL 130

Query: 126 HIAD 129
           HIAD
Sbjct: 131 HIAD 134

[Close]

BLAST of CSPI01G09860 vs. TrEMBL
Match: A5BG90_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g00250 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 9.4e-40
Identity = 89/128 (69.53%), Postives = 106/128 (82.81%), Query Frame = 1


Query: 2   ETGMEEDDSASELLRDRFRLSSISIAEAEANKSGMEISEPVMTCVADLAFKYTKQLAKDL 61
           E   EED+ A+ELLRDRFRLS+ISI EA+A KS MEISEP++ C++DLAFKYT+QLAKDL
Sbjct: 7   ELEREEDEEATELLRDRFRLSTISIVEAQAKKSDMEISEPIVACISDLAFKYTEQLAKDL 66

Query: 62  ELFAQHAGRKSVNTEDVILTAHRNEHLAAILTSICNDLKTKEPQSERKRKKAPKKDDR-D 121
           ELF+QHAGRK+VN EDVIL+AHRN+HLA+ L S CNDLK KE  SERKRKKA +K+D+  
Sbjct: 67  ELFSQHAGRKTVNMEDVILSAHRNKHLASSLRSFCNDLKAKEIPSERKRKKASRKEDKAS 126

Query: 122 RGAVHIAD 129
              VHI D
Sbjct: 127 TSVVHIPD 134

[Close]

BLAST of CSPI01G09860 vs. TrEMBL
Match: A0A061FZG4_THECC (Histone superfamily protein OS=Theobroma cacao GN=TCM_014752 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 1.6e-39
Identity = 89/125 (71.20%), Postives = 104/125 (83.20%), Query Frame = 1


Query: 6   EEDDSASELLRDRFRLSSISIAEAEANKSGMEISEPVMTCVADLAFKYTKQLAKDLELFA 65
           EE+DS  +LLRDRFRLS+ISIAEAEA ++GMEI EP++ C+ADLAFKYT QLAKDLELFA
Sbjct: 17  EEEDSVFDLLRDRFRLSAISIAEAEAKRNGMEILEPIVACIADLAFKYTGQLAKDLELFA 76

Query: 66  QHAGRKSVNTEDVILTAHRNEHLAAILTSICNDLKTKEPQSERKRKKAPKKDDR-DRGAV 125
           QHAGRKSV  EDVI++AHRNEHLAA+L S  N LK KEPQSERKRKK  +K+D+     V
Sbjct: 77  QHAGRKSVKMEDVIVSAHRNEHLAAVLMSFRNKLKAKEPQSERKRKKGSRKEDKATDSVV 136

Query: 126 HIADA 130
           H+ DA
Sbjct: 137 HVPDA 141

[Close]

BLAST of CSPI01G09860 vs. TAIR10
Match: AT5G50930.1 (AT5G50930.1 Histone superfamily protein)

HSP 1 Score: 152.5 bits (384), Expect = 1.8e-37
Identity = 79/114 (69.30%), Postives = 97/114 (85.09%), Query Frame = 1


Query: 7   EDDSASELLRDRFRLSSISIAEAEANKSGMEISEPVMTCVADLAFKYTKQLAKDLELFAQ 66
           E+ S  +L+RDRFRLS+ISIAEAEA K+GMEI  PV+ CVADLAFKY + +AKDLELFA 
Sbjct: 116 EEYSMDDLIRDRFRLSAISIAEAEAKKNGMEIGGPVVACVADLAFKYAENVAKDLELFAH 175

Query: 67  HAGRKSVNTEDVILTAHRNEHLAAILTSICNDLKTKEPQSERKRKK-APKKDDR 120
           HAGRK VN +DV+L+AHRN++LAA L S+CN+LK KEPQSERKRKK + KK+D+
Sbjct: 176 HAGRKVVNMDDVVLSAHRNDNLAASLRSLCNELKAKEPQSERKRKKGSAKKEDK 229

[Close]

BLAST of CSPI01G09860 vs. NCBI nr
Match: gi|449473866|ref|XP_004154006.1| (PREDICTED: centromere protein S isoform X2 [Cucumis sativus])

HSP 1 Score: 247.7 bits (631), Expect = 1.1e-62
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 1


Query: 1   METGMEEDDSASELLRDRFRLSSISIAEAEANKSGMEISEPVMTCVADLAFKYTKQLAKD 60
           METGMEEDDSASELLRDRFRLSSISIAEAEANKSGMEISEPVMTCVADLAFKYTKQLAKD
Sbjct: 1   METGMEEDDSASELLRDRFRLSSISIAEAEANKSGMEISEPVMTCVADLAFKYTKQLAKD 60

Query: 61  LELFAQHAGRKSVNTEDVILTAHRNEHLAAILTSICNDLKTKEPQSERKRKKAPKKDDRD 120
           LELFAQHAGRKSVNTEDVILTAHRNEHLAAILTSICNDLKTKEPQSERKRKKAPKKDDRD
Sbjct: 61  LELFAQHAGRKSVNTEDVILTAHRNEHLAAILTSICNDLKTKEPQSERKRKKAPKKDDRD 120

Query: 121 RGAVHIADA 130
           RGAVHIADA
Sbjct: 121 RGAVHIADA 129

[Close]

BLAST of CSPI01G09860 vs. NCBI nr
Match: gi|778658214|ref|XP_011652290.1| (PREDICTED: centromere protein S isoform X1 [Cucumis sativus])

HSP 1 Score: 241.5 bits (615), Expect = 8.2e-61
Identity = 128/130 (98.46%), Postives = 129/130 (99.23%), Query Frame = 1


Query: 1   METGMEEDDSASELLRDRFRLSSISIAEAEANKSGMEISEPVMTCVADLAFKY-TKQLAK 60
           METGMEEDDSASELLRDRFRLSSISIAEAEANKSGMEISEPVMTCVADLAFKY T+QLAK
Sbjct: 1   METGMEEDDSASELLRDRFRLSSISIAEAEANKSGMEISEPVMTCVADLAFKYTTEQLAK 60

Query: 61  DLELFAQHAGRKSVNTEDVILTAHRNEHLAAILTSICNDLKTKEPQSERKRKKAPKKDDR 120
           DLELFAQHAGRKSVNTEDVILTAHRNEHLAAILTSICNDLKTKEPQSERKRKKAPKKDDR
Sbjct: 61  DLELFAQHAGRKSVNTEDVILTAHRNEHLAAILTSICNDLKTKEPQSERKRKKAPKKDDR 120

Query: 121 DRGAVHIADA 130
           DRGAVHIADA
Sbjct: 121 DRGAVHIADA 130

[Close]

BLAST of CSPI01G09860 vs. NCBI nr
Match: gi|659067575|ref|XP_008440159.1| (PREDICTED: centromere protein S isoform X2 [Cucumis melo])

HSP 1 Score: 238.4 bits (607), Expect = 6.9e-60
Identity = 124/129 (96.12%), Postives = 127/129 (98.45%), Query Frame = 1


Query: 1   METGMEEDDSASELLRDRFRLSSISIAEAEANKSGMEISEPVMTCVADLAFKYTKQLAKD 60
           MET MEEDDSASELLRDRFRLS+ISIAEAEANKSGMEISEPVMTCVADLAFK+TKQLAKD
Sbjct: 1   METRMEEDDSASELLRDRFRLSTISIAEAEANKSGMEISEPVMTCVADLAFKFTKQLAKD 60

Query: 61  LELFAQHAGRKSVNTEDVILTAHRNEHLAAILTSICNDLKTKEPQSERKRKKAPKKDDRD 120
           LELFAQHAGRKSVNTEDVILTAHRNEHLAAILTSICNDLK KEPQSERKRKKAPKKDDRD
Sbjct: 61  LELFAQHAGRKSVNTEDVILTAHRNEHLAAILTSICNDLKAKEPQSERKRKKAPKKDDRD 120

Query: 121 RGAVHIADA 130
           RGAVHIA+A
Sbjct: 121 RGAVHIAEA 129

[Close]

BLAST of CSPI01G09860 vs. NCBI nr
Match: gi|659067571|ref|XP_008440142.1| (PREDICTED: centromere protein S isoform X1 [Cucumis melo])

HSP 1 Score: 232.3 bits (591), Expect = 4.9e-58
Identity = 123/130 (94.62%), Postives = 127/130 (97.69%), Query Frame = 1


Query: 1   METGMEEDDSASELLRDRFRLSSISIAEAEANKSGMEISEPVMTCVADLAFKY-TKQLAK 60
           MET MEEDDSASELLRDRFRLS+ISIAEAEANKSGMEISEPVMTCVADLAFK+ T+QLAK
Sbjct: 1   METRMEEDDSASELLRDRFRLSTISIAEAEANKSGMEISEPVMTCVADLAFKFTTEQLAK 60

Query: 61  DLELFAQHAGRKSVNTEDVILTAHRNEHLAAILTSICNDLKTKEPQSERKRKKAPKKDDR 120
           DLELFAQHAGRKSVNTEDVILTAHRNEHLAAILTSICNDLK KEPQSERKRKKAPKKDDR
Sbjct: 61  DLELFAQHAGRKSVNTEDVILTAHRNEHLAAILTSICNDLKAKEPQSERKRKKAPKKDDR 120

Query: 121 DRGAVHIADA 130
           DRGAVHIA+A
Sbjct: 121 DRGAVHIAEA 130

[Close]

BLAST of CSPI01G09860 vs. NCBI nr
Match: gi|694422429|ref|XP_009339043.1| (PREDICTED: centromere protein S-like [Pyrus x bretschneideri])

HSP 1 Score: 176.4 bits (446), Expect = 3.2e-41
Identity = 92/125 (73.60%), Postives = 105/125 (84.00%), Query Frame = 1


Query: 6   EEDDSASELLRDRFRLSSISIAEAEANKSGMEISEPVMTCVADLAFKYTKQLAKDLELFA 65
           EEDDS SELLRDRFRLS+I IAE EA ++ MEIS PVMTC+ADLAFKYT+QLAKDLELF+
Sbjct: 4   EEDDSVSELLRDRFRLSTIHIAETEAKRNEMEISGPVMTCIADLAFKYTEQLAKDLELFS 63

Query: 66  QHAGRKSVNTEDVILTAHRNEHLAAILTSICNDLKTKEPQSERKRKKAPKKDDR-DRGAV 125
           QH GRK+ + EDVIL+ HRNEHLAA+L S CNDLK KEPQSERKRKKA KK+D+     V
Sbjct: 64  QHGGRKTASMEDVILSVHRNEHLAAMLRSFCNDLKAKEPQSERKRKKASKKEDQATTSVV 123

Query: 126 HIADA 130
           HI D+
Sbjct: 124 HIPDS 128

The following BLAST results are available for this feature:

BLAST of CSPI01G09860 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CENPS_BOVIN	2.5e-09	34.62	Centromere protein S OS=Bos taurus GN=APITD1 PE=2 SV=1	[more]
CENPS_XENLA	1.8e-07	27.68	Centromere protein S OS=Xenopus laevis GN=apitd1 PE=2 SV=1	[more]
CENPS_HUMAN	2.3e-07	29.69	Centromere protein S OS=Homo sapiens GN=APITD1 PE=1 SV=1	[more]
CENPS_CHICK	1.5e-06	26.61	Centromere protein S OS=Gallus gallus GN=APITD1 PE=1 SV=2	[more]
CENPS_MOUSE	2.0e-06	32.61	Centromere protein S OS=Mus musculus GN=Apitd1 PE=2 SV=1	[more]

BLAST of CSPI01G09860 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LR97_CUCSA	7.9e-63	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G051770 PE=4 SV=1	[more]
M5WE31_PRUPE	2.2e-41	73.60	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017850mg PE=4 SV=1	[more]
A0A022QDG1_ERYGU	6.5e-41	71.77	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a016064mg PE=4 SV=1	[more]
A5BG90_VITVI	9.4e-40	69.53	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g00250 PE=4 SV=...	[more]
A0A061FZG4_THECC	1.6e-39	71.20	Histone superfamily protein OS=Theobroma cacao GN=TCM_014752 PE=4 SV=1	[more]

BLAST of CSPI01G09860 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G50930.1	1.8e-37	69.30	Histone superfamily protein	[more]

BLAST of CSPI01G09860 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449473866\|ref\|XP_004154006.1\|	1.1e-62	100.00	PREDICTED: centromere protein S isoform X2 [Cucumis sativus]	[more]
gi\|778658214\|ref\|XP_011652290.1\|	8.2e-61	98.46	PREDICTED: centromere protein S isoform X1 [Cucumis sativus]	[more]
gi\|659067575\|ref\|XP_008440159.1\|	6.9e-60	96.12	PREDICTED: centromere protein S isoform X2 [Cucumis melo]	[more]
gi\|659067571\|ref\|XP_008440142.1\|	4.9e-58	94.62	PREDICTED: centromere protein S isoform X1 [Cucumis melo]	[more]
gi\|694422429\|ref\|XP_009339043.1\|	3.2e-41	73.60	PREDICTED: centromere protein S-like [Pyrus x bretschneideri]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR009072	Histone-fold
IPR009072	Histone-fold

Vocabulary: **Cellular Component**
Term	Definition
GO:0071821	FANCM-MHF complex
GO:0071821	FANCM-MHF complex

Vocabulary: **Molecular Function**
Term	Definition
GO:0046982	protein heterodimerization activity
GO:0046982	protein heterodimerization activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007129	synapsis
biological_process	GO:0006457	protein folding
biological_process	GO:0017009	protein-phycocyanobilin linkage
biological_process	GO:0008150	biological_process
cellular_component	GO:0071821	FANCM-MHF complex
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0030246	carbohydrate binding
molecular_function	GO:0016829	lyase activity
molecular_function	GO:0051082	unfolded protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G09860.2	CSPI01G09860.2	mRNA
CSPI01G09860.1	CSPI01G09860.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 37..80 score: 1.
IPR009072	Histone-fold	unknown	SSF47113	Histone-fold	coord: 34..88 score: 3.07
None	No IPR available	PANTHER	PTHR22980	CORTISTATIN	coord: 5..121 score: 3.8
None	No IPR available	PANTHER	PTHR22980:SF0	CENTROMERE PROTEIN S	coord: 5..121 score: 3.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI01G09860	Csa1G051770	Cucumber (Chinese Long) v2	cpicuB000
CSPI01G09860	ClCG03G004020	Watermelon (Charleston Gray)	cpiwcgB038
CSPI01G09860	Lsi02G005280	Bottle gourd (USVL1VR-Ls)	cpilsiB021
CSPI01G09860	MELO3C035737.2	Melon (DHL92) v3.6.1	cpimedB023
CSPI01G09860	CsaV3_1G009910	Cucumber (Chinese Long) v3	cpicucB001
CSPI01G09860	Cla97C03G055200	Watermelon (97103) v2	cpiwmbB032
CSPI01G09860	Bhi08G001261	Wax gourd	cpiwgoB032
CSPI01G09860	Cucsa.134740	Cucumber (Gy14) v1	cgycpiB192
CSPI01G09860	CmaCh18G002910	Cucurbita maxima (Rimu)	cmacpiB401
CSPI01G09860	CmoCh18G002390	Cucurbita moschata (Rifu)	cmocpiB383
CSPI01G09860	Cp4.1LG09g09290	Cucurbita pepo (Zucchini)	cpecpiB025
CSPI01G09860	CsGy1G009880	Cucumber (Gy14) v2	cgybcpiB001
CSPI01G09860	Carg06818	Silver-seed gourd	carcpiB0531

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI01G09860	Cucumber (Gy14) v1	cgycpiB230
CSPI01G09860	Cucurbita maxima (Rimu)	cmacpiB103
CSPI01G09860	Cucurbita maxima (Rimu)	cmacpiB206
CSPI01G09860	Cucurbita moschata (Rifu)	cmocpiB098
CSPI01G09860	Cucurbita moschata (Rifu)	cmocpiB193
CSPI01G09860	Cucumber (Chinese Long) v2	cpicuB010
CSPI01G09860	Melon (DHL92) v3.5.1	cpimeB052
CSPI01G09860	Melon (DHL92) v3.5.1	cpimeB024
CSPI01G09860	Watermelon (Charleston Gray)	cpiwcgB075
CSPI01G09860	Watermelon (97103) v1	cpiwmB010
CSPI01G09860	Watermelon (97103) v1	cpiwmB094
CSPI01G09860	Cucurbita pepo (Zucchini)	cpecpiB517
CSPI01G09860	Cucurbita pepo (Zucchini)	cpecpiB652
CSPI01G09860	Bottle gourd (USVL1VR-Ls)	cpilsiB068
CSPI01G09860	Melon (DHL92) v3.6.1	cpimedB046
CSPI01G09860	Cucumber (Gy14) v2	cgybcpiB012
CSPI01G09860	Silver-seed gourd	carcpiB1041
CSPI01G09860	Cucumber (Chinese Long) v3	cpicucB014
CSPI01G09860	Watermelon (97103) v2	cpiwmbB072
CSPI01G09860	Wild cucumber (PI 183967)	cpicpiB003