CmoCh18G002390 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh18G002390
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Centromere S
Location	Cmo_Chr18 : 1583974 .. 1585869 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GAACAGGTGCAGCGAAATGGAGTGAACTCTGTGTCCAGAAGGCTCTGCAATGGAGACTGGGATGGAAGAAGACGACTCCACGGCCGAACTCTTGAGGGGCCGATTCCGACTGTCCGCCATTTCTATCGCTGAAGCTGAAGGTTAATTATCTTCATCTTACTCTCTTCATTTGCAAACTTGTCTGGTTGTATGTGTAATACAATCAGAATCAACAGGAAAAATGAAGAAGTATTATCCTCTGATTACTGTATGCCAAGACGAAGTTTTCGTATTTCTGTTTCGCTTACTCTAATTGTGAACTGTTTGGTTTGTTTTGCAGCGAAGAGAAGCGGGATGGAAATCTCTGTACCGGTGATGACTTGTGTCGCTGAGTTAGCGTTCAAATATACAAGTTAGTTTACTGTTCTTTCCTTTCCTGTTTTGAGTCTGCAATGTTATTATGAGCACTTGATTTCTACATGACTACAACCGATTTCAGGATAATGTATAGATCACCGAAATTGCCAATTCCACCTTTCGTTAGACTTACAGTCTGCATTATGTTGATGACCTAATTGCTAATTGTTTTAGTATCCGTTCTCTTCTCGCTGTGTTTCCATCATTTTTAGGTAGTTTATATGCAGTTTCGGTTAGAAATTTCCTTTCTATTTAGCATGCATTTGGTTTGTTGGGATGCCTTTCTGTGCTATGTAGTTAAATCGTGTGATCTAGTTGGAAGGAAACTACATAAGTTGTGTCAAGTTTAAGACAGGAAAGTGTTGCAGGAAGTACAAATGATGGAGGGGCCATTGTGATAACTTAGTGAATGACTTTTCACGATACTTTTGGATTCTAATCAGATGTTCTTATTGTTCATATCAATTGCTTCTTTCAGTATGACGGACAAAGTCCCTCATTCTACCTTGAGATTTACACCTTACAGCATTTGTGTTAGGTGTAAAGCCTTAACCTTGTCATACTCTTGTGGGAGCCTATGCCTCTGGAAGAAGAGGTGTAAGATTCTTATGAAGCAAAAATGTTGAGTTATACCATGGGAAGGAGAGTTCTCGTTATCTTATGTTTCTCTGTTTATATTTCAATCTCGTAAAGAAAACATAGTTATTATTTTAATTTATATTTATACATTAGCTTCAAGTCAGTTTTCTGTTACCGATGAATACTTCATTCATTGCGTTAAAGAAGAAAACATATACTTATATCATATCCATGAAGTTAAGGTTTTCTTCCATCATACACTTGAATGATCTGGTAGGTTTACTAGGTTTTGACCATAATTTGAGCTCATACCATGGTGTAGGGTCATGCTTATGTTTGTAGTTGCAAGGCTACCATATGAACTACCAATTTGTATAATATATGCAAGGAAAACAAAGTTTCGTTTACTGTGCCACTATGGTTGTATCTCAGGCAGCAAGGAAAGGAGATAATTCAGTCATAATTGTGTTTGATTTGTTTTTATGATTCTCAAAGTTTCGCAATGAGATAGATAACGGAATGGTAACTTGTGTAACAGAACAGTTGGCAAAGGACCTTGAGTTATTTGCTCATCATGGTGGTCGGAAATCTGTGAATACGGAAGACGTCATACTCTCAGGTTAGCCTGTCCTGATATCTGTTAATCTCAGCTTGCACTCCAATTTTTCATTTGTTTTGTTGTAGTACTGTCTAGTTATATTTAGTCAATATGCAGCAGACTTTAATCGGAAGTAGTATTAATCGCTTGAACCTCTTTGTTTCTGCATCATTTTGGTCTCAGCTCATAGAAACGAGCATCTGGCTGCCTCATTGTCGTCCTTCTGCCATGAACTAAAGACAAAAGAACCTCAAAGTGAGAGAAAGCGGAAAAAGGCACCGAAAAAGGAAGATAAAAGTGCAATACATATTACTGACGCATAA

mRNA sequence

GAACAGGTGCAGCGAAATGGAGTGAACTCTGTGTCCAGAAGGCTCTGCAATGGAGACTGGGATGGAAGAAGACGACTCCACGGCCGAACTCTTGAGGGGCCGATTCCGACTGTCCGCCATTTCTATCGCTGAAGCTGAAGCGAAGAGAAGCGGGATGGAAATCTCTGTACCGGTGATGACTTGTGTCGCTGAGTTAGCGTTCAAATATACAAAACAGTTGGCAAAGGACCTTGAGTTATTTGCTCATCATGGTGGTCGGAAATCTGTGAATACGGAAGACGTCATACTCTCAGCTCATAGAAACGAGCATCTGGCTGCCTCATTGTCGTCCTTCTGCCATGAACTAAAGACAAAAGAACCTCAAAGTGAGAGAAAGCGGAAAAAGGCACCGAAAAAGGAAGATAAAAGTGCAATACATATTACTGACGCATAA

Coding sequence (CDS)

ATGGAGACTGGGATGGAAGAAGACGACTCCACGGCCGAACTCTTGAGGGGCCGATTCCGACTGTCCGCCATTTCTATCGCTGAAGCTGAAGCGAAGAGAAGCGGGATGGAAATCTCTGTACCGGTGATGACTTGTGTCGCTGAGTTAGCGTTCAAATATACAAAACAGTTGGCAAAGGACCTTGAGTTATTTGCTCATCATGGTGGTCGGAAATCTGTGAATACGGAAGACGTCATACTCTCAGCTCATAGAAACGAGCATCTGGCTGCCTCATTGTCGTCCTTCTGCCATGAACTAAAGACAAAAGAACCTCAAAGTGAGAGAAAGCGGAAAAAGGCACCGAAAAAGGAAGATAAAAGTGCAATACATATTACTGACGCATAA

Homology

[Close]

BLAST of CmoCh18G002390 vs. Swiss-Prot
Match: CENPS_XENLA (Centromere protein S OS=Xenopus laevis GN=apitd1 PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 3.9e-07
Identity = 33/112 (29.46%), Postives = 55/112 (49.11%), Query Frame = 1


Query: 1   METGMEEDDSTAELLRGRFRLSAISIAEAEAKRSGMEISVPVMTCVAELAFKYTKQLAKD 60
           M  G EE  S  + L+        S+ +  A    ++ S   +  ++E+ F+  +  AKD
Sbjct: 1   MAEGQEEHFSRTQRLKAAVHYVVGSLCQEVADDKEIDFSKQAIAAISEITFRQCESFAKD 60

Query: 61  LELFAHHGGRKSVNTEDVILSAHRNEHLAASLSSFCHELKTKEPQSERKRKK 113
           LE+FA H  R ++N +DV L A R+  L A +S    E+     + + K+KK
Sbjct: 61  LEIFARHAKRTTINMDDVKLLARRSRSLYAHISKCSDEIAANSLEQKEKKKK 112

[Close]

BLAST of CmoCh18G002390 vs. Swiss-Prot
Match: CENPS_HUMAN (Centromere protein S OS=Homo sapiens GN=APITD1 PE=1 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 3.3e-06
Identity = 38/119 (31.93%), Postives = 59/119 (49.58%), Query Frame = 1


Query: 2   ETGMEEDDSTAELLRGRFRLSAISIAEAEAKRSGMEISVPVMTCVAELAFKYTKQLAKDL 61
           ET  ++  S  + L+     +   + E  A    M+ S   +  ++EL F+  +  AKDL
Sbjct: 6   ETEEQQRFSYQQRLKAAVHYTVGCLCEEVALDKEMQFSKQTIAAISELTFRQCENFAKDL 65

Query: 62  ELFAHHGGRKSVNTEDVILSAHRNEHLAASLSSFCHELKTKEPQSERKRKKAPKKEDKS 121
           E+FA H  R ++NTEDV L A R+  L   ++    E+   +   ERK +K  K ED S
Sbjct: 66  EMFARHAKRTTINTEDVKLLARRSNSLLKYITDKSEEI--AQINLERKAQKKKKSEDGS 122

[Close]

BLAST of CmoCh18G002390 vs. Swiss-Prot
Match: CENPS_BOVIN (Centromere protein S OS=Bos taurus GN=APITD1 PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 7.3e-06
Identity = 37/131 (28.24%), Postives = 66/131 (50.38%), Query Frame = 1


Query: 5   MEEDDSTAELLRGRF--RLSAI------SIAEAEAKRSGMEISVPVMTCVAELAFKYTKQ 64
           MEE++ + E  R  +  RL A        + E  A    M+ S   +  ++E+ F   + 
Sbjct: 1   MEEEEWSEEQQRFSYLQRLKAAVHYTVGCLCEEVASDKDMQFSKQTIAAISEVTFGQCEN 60

Query: 65  LAKDLELFAHHGGRKSVNTEDVILSAHRNEHLAASLSSFCHELKTKEPQSERKRKKAPKK 124
            AKDLE+FA H  R ++NTEDV L A R+  L   ++    ++     + + K+KK  + 
Sbjct: 61  FAKDLEMFARHAKRSTINTEDVKLLARRSHSLLKYITEKNEDIAQLNLEKKAKKKKKLED 120

Query: 125 EDKSAIHITDA 128
           E+++++   +A
Sbjct: 121 ENRNSVESAEA 131

[Close]

BLAST of CmoCh18G002390 vs. TrEMBL
Match: A0A0A0LR97_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G051770 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 3.7e-49
Identity = 106/129 (82.17%), Postives = 117/129 (90.70%), Query Frame = 1


Query: 1   METGMEEDDSTAELLRGRFRLSAISIAEAEAKRSGMEISVPVMTCVAELAFKYTKQLAKD 60
           METGMEEDDS +ELLR RFRLS+ISIAEAEA +SGMEIS PVMTCVA+LAFKYTKQLAKD
Sbjct: 1   METGMEEDDSASELLRDRFRLSSISIAEAEANKSGMEISEPVMTCVADLAFKYTKQLAKD 60

Query: 61  LELFAHHGGRKSVNTEDVILSAHRNEHLAASLSSFCHELKTKEPQSERKRKKAPKKE--D 120
           LELFA H GRKSVNTEDVIL+AHRNEHLAA L+S C++LKTKEPQSERKRKKAPKK+  D
Sbjct: 61  LELFAQHAGRKSVNTEDVILTAHRNEHLAAILTSICNDLKTKEPQSERKRKKAPKKDDRD 120

Query: 121 KSAIHITDA 128
           + A+HI DA
Sbjct: 121 RGAVHIADA 129

[Close]

BLAST of CmoCh18G002390 vs. TrEMBL
Match: A0A022QDG1_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a016064mg PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 3.2e-40
Identity = 88/124 (70.97%), Postives = 107/124 (86.29%), Query Frame = 1


Query: 6   EEDDSTAELLRGRFRLSAISIAEAEAKRSGMEISVPVMTCVAELAFKYTKQLAKDLELFA 65
           EE++S +ELLR RFRL  I+IAEAEAK++GME+S P+M C+++LAFKY +QLAKDLELFA
Sbjct: 11  EEEESASELLRDRFRLCTIAIAEAEAKQNGMEVSQPIMACISDLAFKYAQQLAKDLELFA 70

Query: 66  HHGGRKSVNTEDVILSAHRNEHLAASLSSFCHELKTKEPQSERKRKKAPKKEDKSA---I 125
            HGGRKSVN EDVILSAHRN+HL+ASL SFC++LK KEPQS+RKRKK  KKEDK+A   +
Sbjct: 71  QHGGRKSVNMEDVILSAHRNDHLSASLRSFCNDLKAKEPQSDRKRKKNTKKEDKAAADVL 130

Query: 126 HITD 127
           HI D
Sbjct: 131 HIAD 134

[Close]

BLAST of CmoCh18G002390 vs. TrEMBL
Match: A0A0D2PT00_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G054300 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 9.2e-40
Identity = 89/114 (78.07%), Postives = 99/114 (86.84%), Query Frame = 1


Query: 6   EEDDSTAELLRGRFRLSAISIAEAEAKRSGMEISVPVMTCVAELAFKYTKQLAKDLELFA 65
           EEDDS ++LLR RFRLSAISIAE+EAKRSGMEIS P++ C+A+LAFKY  QLAKDLELFA
Sbjct: 17  EEDDSVSDLLRDRFRLSAISIAESEAKRSGMEISPPIVACIADLAFKYIGQLAKDLELFA 76

Query: 66  HHGGRKSVNTEDVILSAHRNEHLAASLSSFCHELKTKEPQSERKRKKAPKKEDK 120
           HH GRKSV   DVI+SAHRNEHLAASL S+  ELK KEPQSERKRKK P+KEDK
Sbjct: 77  HHAGRKSVTMTDVIVSAHRNEHLAASLRSYSDELKAKEPQSERKRKKVPRKEDK 130

[Close]

BLAST of CmoCh18G002390 vs. TrEMBL
Match: M5WE31_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017850mg PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 2.1e-39
Identity = 90/125 (72.00%), Postives = 106/125 (84.80%), Query Frame = 1


Query: 6   EEDDSTAELLRGRFRLSAISIAEAEAKRSGMEISVPVMTCVAELAFKYTKQLAKDLELFA 65
           EE+DS +ELLR RFR+S ISIAEAEAKR+ MEIS PVMTC+A+LAFK+T+QLAKDLELFA
Sbjct: 4   EEEDSVSELLRDRFRVSTISIAEAEAKRNDMEISGPVMTCIADLAFKFTEQLAKDLELFA 63

Query: 66  HHGGRKSVNTEDVILSAHRNEHLAASLSSFCHELKTKEPQSERKRKKAPKKEDK---SAI 125
            H GRK+ N EDVILSAHRNEHLAA L SF ++LK +EPQSERKRKK+ KKED+   S +
Sbjct: 64  QHAGRKTANMEDVILSAHRNEHLAALLRSFSNDLKAREPQSERKRKKSSKKEDQATTSVV 123

Query: 126 HITDA 128
           HI D+
Sbjct: 124 HIPDS 128

[Close]

BLAST of CmoCh18G002390 vs. TrEMBL
Match: A0A0B0PHH8_GOSAR (Centromere S OS=Gossypium arboreum GN=F383_09529 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 2.1e-39
Identity = 88/114 (77.19%), Postives = 99/114 (86.84%), Query Frame = 1


Query: 6   EEDDSTAELLRGRFRLSAISIAEAEAKRSGMEISVPVMTCVAELAFKYTKQLAKDLELFA 65
           EEDDS ++LLR RFRLSAISIAE+EAKRSGMEIS P++ C+A+LAFKY  QLAKDLELFA
Sbjct: 17  EEDDSVSDLLRDRFRLSAISIAESEAKRSGMEISPPIVACIADLAFKYIGQLAKDLELFA 76

Query: 66  HHGGRKSVNTEDVILSAHRNEHLAASLSSFCHELKTKEPQSERKRKKAPKKEDK 120
           HH GRKSV   DVI+SAHRNEHLAASL S+  ELK KEPQS+RKRKK P+KEDK
Sbjct: 77  HHAGRKSVTMTDVIVSAHRNEHLAASLRSYSDELKAKEPQSDRKRKKVPRKEDK 130

[Close]

BLAST of CmoCh18G002390 vs. TAIR10
Match: AT5G50930.1 (AT5G50930.1 Histone superfamily protein)

HSP 1 Score: 154.1 bits (388), Expect = 5.9e-38
Identity = 82/116 (70.69%), Postives = 99/116 (85.34%), Query Frame = 1


Query: 7   EDDSTAELLRGRFRLSAISIAEAEAKRSGMEISVPVMTCVAELAFKYTKQLAKDLELFAH 66
           E+ S  +L+R RFRLSAISIAEAEAK++GMEI  PV+ CVA+LAFKY + +AKDLELFAH
Sbjct: 116 EEYSMDDLIRDRFRLSAISIAEAEAKKNGMEIGGPVVACVADLAFKYAENVAKDLELFAH 175

Query: 67  HGGRKSVNTEDVILSAHRNEHLAASLSSFCHELKTKEPQSERKRKK-APKKEDKSA 122
           H GRK VN +DV+LSAHRN++LAASL S C+ELK KEPQSERKRKK + KKEDK++
Sbjct: 176 HAGRKVVNMDDVVLSAHRNDNLAASLRSLCNELKAKEPQSERKRKKGSAKKEDKAS 231

[Close]

BLAST of CmoCh18G002390 vs. NCBI nr
Match: gi|449473866|ref|XP_004154006.1| (PREDICTED: centromere protein S isoform X2 [Cucumis sativus])

HSP 1 Score: 202.2 bits (513), Expect = 5.4e-49
Identity = 106/129 (82.17%), Postives = 117/129 (90.70%), Query Frame = 1


Query: 1   METGMEEDDSTAELLRGRFRLSAISIAEAEAKRSGMEISVPVMTCVAELAFKYTKQLAKD 60
           METGMEEDDS +ELLR RFRLS+ISIAEAEA +SGMEIS PVMTCVA+LAFKYTKQLAKD
Sbjct: 1   METGMEEDDSASELLRDRFRLSSISIAEAEANKSGMEISEPVMTCVADLAFKYTKQLAKD 60

Query: 61  LELFAHHGGRKSVNTEDVILSAHRNEHLAASLSSFCHELKTKEPQSERKRKKAPKKE--D 120
           LELFA H GRKSVNTEDVIL+AHRNEHLAA L+S C++LKTKEPQSERKRKKAPKK+  D
Sbjct: 61  LELFAQHAGRKSVNTEDVILTAHRNEHLAAILTSICNDLKTKEPQSERKRKKAPKKDDRD 120

Query: 121 KSAIHITDA 128
           + A+HI DA
Sbjct: 121 RGAVHIADA 129

[Close]

BLAST of CmoCh18G002390 vs. NCBI nr
Match: gi|778658214|ref|XP_011652290.1| (PREDICTED: centromere protein S isoform X1 [Cucumis sativus])

HSP 1 Score: 196.1 bits (497), Expect = 3.8e-47
Identity = 105/130 (80.77%), Postives = 117/130 (90.00%), Query Frame = 1


Query: 1   METGMEEDDSTAELLRGRFRLSAISIAEAEAKRSGMEISVPVMTCVAELAFKY-TKQLAK 60
           METGMEEDDS +ELLR RFRLS+ISIAEAEA +SGMEIS PVMTCVA+LAFKY T+QLAK
Sbjct: 1   METGMEEDDSASELLRDRFRLSSISIAEAEANKSGMEISEPVMTCVADLAFKYTTEQLAK 60

Query: 61  DLELFAHHGGRKSVNTEDVILSAHRNEHLAASLSSFCHELKTKEPQSERKRKKAPKKE-- 120
           DLELFA H GRKSVNTEDVIL+AHRNEHLAA L+S C++LKTKEPQSERKRKKAPKK+  
Sbjct: 61  DLELFAQHAGRKSVNTEDVILTAHRNEHLAAILTSICNDLKTKEPQSERKRKKAPKKDDR 120

Query: 121 DKSAIHITDA 128
           D+ A+HI DA
Sbjct: 121 DRGAVHIADA 130

[Close]

BLAST of CmoCh18G002390 vs. NCBI nr
Match: gi|659067575|ref|XP_008440159.1| (PREDICTED: centromere protein S isoform X2 [Cucumis melo])

HSP 1 Score: 193.7 bits (491), Expect = 1.9e-46
Identity = 102/129 (79.07%), Postives = 114/129 (88.37%), Query Frame = 1


Query: 1   METGMEEDDSTAELLRGRFRLSAISIAEAEAKRSGMEISVPVMTCVAELAFKYTKQLAKD 60
           MET MEEDDS +ELLR RFRLS ISIAEAEA +SGMEIS PVMTCVA+LAFK+TKQLAKD
Sbjct: 1   METRMEEDDSASELLRDRFRLSTISIAEAEANKSGMEISEPVMTCVADLAFKFTKQLAKD 60

Query: 61  LELFAHHGGRKSVNTEDVILSAHRNEHLAASLSSFCHELKTKEPQSERKRKKAPKKE--D 120
           LELFA H GRKSVNTEDVIL+AHRNEHLAA L+S C++LK KEPQSERKRKKAPKK+  D
Sbjct: 61  LELFAQHAGRKSVNTEDVILTAHRNEHLAAILTSICNDLKAKEPQSERKRKKAPKKDDRD 120

Query: 121 KSAIHITDA 128
           + A+HI +A
Sbjct: 121 RGAVHIAEA 129

[Close]

BLAST of CmoCh18G002390 vs. NCBI nr
Match: gi|659067571|ref|XP_008440142.1| (PREDICTED: centromere protein S isoform X1 [Cucumis melo])

HSP 1 Score: 187.6 bits (475), Expect = 1.4e-44
Identity = 101/130 (77.69%), Postives = 114/130 (87.69%), Query Frame = 1


Query: 1   METGMEEDDSTAELLRGRFRLSAISIAEAEAKRSGMEISVPVMTCVAELAFKY-TKQLAK 60
           MET MEEDDS +ELLR RFRLS ISIAEAEA +SGMEIS PVMTCVA+LAFK+ T+QLAK
Sbjct: 1   METRMEEDDSASELLRDRFRLSTISIAEAEANKSGMEISEPVMTCVADLAFKFTTEQLAK 60

Query: 61  DLELFAHHGGRKSVNTEDVILSAHRNEHLAASLSSFCHELKTKEPQSERKRKKAPKKE-- 120
           DLELFA H GRKSVNTEDVIL+AHRNEHLAA L+S C++LK KEPQSERKRKKAPKK+  
Sbjct: 61  DLELFAQHAGRKSVNTEDVILTAHRNEHLAAILTSICNDLKAKEPQSERKRKKAPKKDDR 120

Query: 121 DKSAIHITDA 128
           D+ A+HI +A
Sbjct: 121 DRGAVHIAEA 130

[Close]

BLAST of CmoCh18G002390 vs. NCBI nr
Match: gi|694422429|ref|XP_009339043.1| (PREDICTED: centromere protein S-like [Pyrus x bretschneideri])

HSP 1 Score: 174.5 bits (441), Expect = 1.2e-40
Identity = 92/125 (73.60%), Postives = 105/125 (84.00%), Query Frame = 1


Query: 6   EEDDSTAELLRGRFRLSAISIAEAEAKRSGMEISVPVMTCVAELAFKYTKQLAKDLELFA 65
           EEDDS +ELLR RFRLS I IAE EAKR+ MEIS PVMTC+A+LAFKYT+QLAKDLELF+
Sbjct: 4   EEDDSVSELLRDRFRLSTIHIAETEAKRNEMEISGPVMTCIADLAFKYTEQLAKDLELFS 63

Query: 66  HHGGRKSVNTEDVILSAHRNEHLAASLSSFCHELKTKEPQSERKRKKAPKKEDK---SAI 125
            HGGRK+ + EDVILS HRNEHLAA L SFC++LK KEPQSERKRKKA KKED+   S +
Sbjct: 64  QHGGRKTASMEDVILSVHRNEHLAAMLRSFCNDLKAKEPQSERKRKKASKKEDQATTSVV 123

Query: 126 HITDA 128
           HI D+
Sbjct: 124 HIPDS 128

The following BLAST results are available for this feature:

BLAST of CmoCh18G002390 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CENPS_XENLA	3.9e-07	29.46	Centromere protein S OS=Xenopus laevis GN=apitd1 PE=2 SV=1	[more]
CENPS_HUMAN	3.3e-06	31.93	Centromere protein S OS=Homo sapiens GN=APITD1 PE=1 SV=1	[more]
CENPS_BOVIN	7.3e-06	28.24	Centromere protein S OS=Bos taurus GN=APITD1 PE=2 SV=1	[more]

BLAST of CmoCh18G002390 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LR97_CUCSA	3.7e-49	82.17	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G051770 PE=4 SV=1	[more]
A0A022QDG1_ERYGU	3.2e-40	70.97	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a016064mg PE=4 SV=1	[more]
A0A0D2PT00_GOSRA	9.2e-40	78.07	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G054300 PE=4 SV=1	[more]
M5WE31_PRUPE	2.1e-39	72.00	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017850mg PE=4 SV=1	[more]
A0A0B0PHH8_GOSAR	2.1e-39	77.19	Centromere S OS=Gossypium arboreum GN=F383_09529 PE=4 SV=1	[more]

BLAST of CmoCh18G002390 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G50930.1	5.9e-38	70.69	Histone superfamily protein	[more]

BLAST of CmoCh18G002390 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449473866\|ref\|XP_004154006.1\|	5.4e-49	82.17	PREDICTED: centromere protein S isoform X2 [Cucumis sativus]	[more]
gi\|778658214\|ref\|XP_011652290.1\|	3.8e-47	80.77	PREDICTED: centromere protein S isoform X1 [Cucumis sativus]	[more]
gi\|659067575\|ref\|XP_008440159.1\|	1.9e-46	79.07	PREDICTED: centromere protein S isoform X2 [Cucumis melo]	[more]
gi\|659067571\|ref\|XP_008440142.1\|	1.4e-44	77.69	PREDICTED: centromere protein S isoform X1 [Cucumis melo]	[more]
gi\|694422429\|ref\|XP_009339043.1\|	1.2e-40	73.60	PREDICTED: centromere protein S-like [Pyrus x bretschneideri]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR009072	Histone-fold

Vocabulary: **Cellular Component**
Term	Definition
GO:0071821	FANCM-MHF complex

Vocabulary: **Molecular Function**
Term	Definition
GO:0046982	protein heterodimerization activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007129	synapsis
biological_process	GO:0006457	protein folding
biological_process	GO:0017009	protein-phycocyanobilin linkage
biological_process	GO:0008150	biological_process
cellular_component	GO:0071821	FANCM-MHF complex
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0030246	carbohydrate binding
molecular_function	GO:0016829	lyase activity
molecular_function	GO:0051082	unfolded protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh18G002390.1	CmoCh18G002390.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 34..83 score: 8.
IPR009072	Histone-fold	unknown	SSF47113	Histone-fold	coord: 34..87 score: 1.2
None	No IPR available	PANTHER	PTHR22980	CORTISTATIN	coord: 5..121 score: 1.1
None	No IPR available	PANTHER	PTHR22980:SF0	CENTROMERE PROTEIN S	coord: 5..121 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh18G002390	Cucsa.134740	Cucumber (Gy14) v1	cgycmoB0364
CmoCh18G002390	CmaCh18G002910	Cucurbita maxima (Rimu)	cmacmoB409
CmoCh18G002390	Csa1G051770	Cucumber (Chinese Long) v2	cmocuB380
CmoCh18G002390	ClCG03G004020	Watermelon (Charleston Gray)	cmowcgB350
CmoCh18G002390	CSPI01G09860	Wild cucumber (PI 183967)	cmocpiB383
CmoCh18G002390	Lsi02G005280	Bottle gourd (USVL1VR-Ls)	cmolsiB356
CmoCh18G002390	Cp4.1LG09g09290	Cucurbita pepo (Zucchini)	cmocpeB377
CmoCh18G002390	MELO3C035737.2	Melon (DHL92) v3.6.1	cmomedB408
CmoCh18G002390	CsaV3_1G009910	Cucumber (Chinese Long) v3	cmocucB0457
CmoCh18G002390	Cla97C03G055200	Watermelon (97103) v2	cmowmbB394
CmoCh18G002390	Bhi08G001261	Wax gourd	cmowgoB0518
CmoCh18G002390	CsGy1G009880	Cucumber (Gy14) v2	cgybcmoB082
CmoCh18G002390	Carg06818	Silver-seed gourd	carcmoB0673

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh18G002390	Silver-seed gourd	carcmoB1350
CmoCh18G002390	Cucurbita moschata (Rifu)	cmocmoB166
CmoCh18G002390	Cucurbita maxima (Rimu)	cmacmoB219
CmoCh18G002390	Melon (DHL92) v3.5.1	cmomeB356
CmoCh18G002390	Watermelon (97103) v1	cmowmB360
CmoCh18G002390	Cucurbita pepo (Zucchini)	cmocpeB405