Lsi01G007440 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi01G007440
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionBeta-1,3-N-acetylglucosaminyltransferase family protein
Locationchr01 : 5844475 .. 5844999 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTAGGTGTGATTGTAAATGACTTTTTTATTCTTCGTTTTTGAATAGTCGTCTTATCCGACCATTTCTTTTTATCTATATACTTTTAGCGCGTATATATTTTTATAAATATTCATTTTAATCCATATATTTCATACGAAGGGACCATAAAAAAATAATTGTTTTTTTTTTTTTTTGTGCTGATGTTGATGTTTGAGAACTTGTTGTTCCAGGAAATTGCCAGTGTTTATTGAACAACATAACAATCAGCCAAAAGATGACTGGATTTCAAATCCATGGAATGACAGAATGGAAAGTGACAATAAGCACCAACTGTGTGTGTTCTCAGTCAGAGGTGAAAGTAGATTGCAAAGGATTTCAAACTACTGAAAGCATTGATCCTTCCATCTTAGCCATTTCTGATACTGAGTGTTTGGTCAACAATGGCCTCCCAATTTTCAGTTCCAAACCAATCACCTTCACTTATGCACAAGACCCTCAATTCAATTTCAAGCCAATCTCCTCCCAGATTTCTTGTTCTTAA

mRNA sequence

ATGGGAAATTGCCAGTGTTTATTGAACAACATAACAATCAGCCAAAAGATGACTGGATTTCAAATCCATGGAATGACAGAATGGAAAGTGACAATAAGCACCAACTGTGTGTGTTCTCAGTCAGAGGTGAAAGTAGATTGCAAAGGATTTCAAACTACTGAAAGCATTGATCCTTCCATCTTAGCCATTTCTGATACTGAGTGTTTGGTCAACAATGGCCTCCCAATTTTCAGTTCCAAACCAATCACCTTCACTTATGCACAAGACCCTCAATTCAATTTCAAGCCAATCTCCTCCCAGATTTCTTGTTCTTAA

Coding sequence (CDS)

ATGGGAAATTGCCAGTGTTTATTGAACAACATAACAATCAGCCAAAAGATGACTGGATTTCAAATCCATGGAATGACAGAATGGAAAGTGACAATAAGCACCAACTGTGTGTGTTCTCAGTCAGAGGTGAAAGTAGATTGCAAAGGATTTCAAACTACTGAAAGCATTGATCCTTCCATCTTAGCCATTTCTGATACTGAGTGTTTGGTCAACAATGGCCTCCCAATTTTCAGTTCCAAACCAATCACCTTCACTTATGCACAAGACCCTCAATTCAATTTCAAGCCAATCTCCTCCCAGATTTCTTGTTCTTAA

Protein sequence

MGNCQCLLNNITISQKMTGFQIHGMTEWKVTISTNCVCSQSEVKVDCKGFQTTESIDPSILAISDTECLVNNGLPIFSSKPITFTYAQDPQFNFKPISSQISCS
Homology
[Close]
BLAST of Lsi01G007440 vs. TrEMBL
Match: A0A0A0KLZ6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G500630 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 3.9e-44
Identity = 84/103 (81.55%), Postives = 94/103 (91.26%), Query Frame = 1 

Query: 2   GNCQCLLNNITISQKMTGFQIHGMTEWKVTISTNCVCSQSEVKVDCKGFQTTESIDPSIL 61
           GNCQC LNNI ISQ MTGFQIHGMTEWKVTI+ NC+CSQS++K+DCKGF TT SIDPSIL
Sbjct: 20  GNCQCFLNNIKISQSMTGFQIHGMTEWKVTITNNCICSQSDLKLDCKGFATTLSIDPSIL 79

Query: 62  AISDTECLVNNGLPIFSSKPITFTYAQDPQFNFKPISSQISCS 105
           AISD+ECLVNNG PIF+S+PITF YAQ P+FNFKP+SSQISCS
Sbjct: 80  AISDSECLVNNGQPIFNSRPITFKYAQSPKFNFKPLSSQISCS 122

[Close]
BLAST of Lsi01G007440 vs. TrEMBL
Match: A0A0A0LEA1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G875970 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 1.1e-30
Identity = 62/103 (60.19%), Postives = 77/103 (74.76%), Query Frame = 1 

Query: 2   GNCQCLLNNITISQKMTGFQIHGMTEWKVTISTNCVCSQSEVKVDCKGFQTTESIDPSIL 61
           GNC+C+LN+I ISQ  TG  + G   WK TI+ NC+C QS +K+DC GF T +++DPSIL
Sbjct: 20  GNCECVLNDIAISQTTTGSIVQGKQVWKATITNNCICGQSSLKLDCNGFNTVQAVDPSIL 79

Query: 62  AISDTECLVNNGLPIFSSKPITFTYAQDPQFNFKPISSQISCS 105
           A+S + CLVN G PIF S PI+FTYA D  F FKP+SSQISCS
Sbjct: 80  AVSGSVCLVNGGQPIFQSTPISFTYASDNAFPFKPLSSQISCS 122

[Close]
BLAST of Lsi01G007440 vs. TrEMBL
Match: A0A0A0LDN0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G875990 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.5e-27
Identity = 57/103 (55.34%), Postives = 73/103 (70.87%), Query Frame = 1 

Query: 2   GNCQCLLNNITISQKMTGFQIHGMTEWKVTISTNCVCSQSEVKVDCKGFQTTESIDPSIL 61
           GNC+C +N+I ISQ  TG +++G  EW+ TI   CVCSQ  VK DC GF T E +D SIL
Sbjct: 20  GNCECSMNDIEISQSTTGREVNGKQEWRATIRNKCVCSQYSVKFDCNGFNTVEKVDESIL 79

Query: 62  AISDTECLVNNGLPIFSSKPITFTYAQDPQFNFKPISSQISCS 105
            ++ + CLVNNG PIF+S PI+FTYA D  F F P+ SQ++CS
Sbjct: 80  MVAGSVCLVNNGQPIFNSSPISFTYAWDNAFPFSPLFSQVACS 122

[Close]
BLAST of Lsi01G007440 vs. TrEMBL
Match: A0A067F358_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g040068mg PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 4.7e-26
Identity = 57/104 (54.81%), Postives = 74/104 (71.15%), Query Frame = 1 

Query: 2   GNCQCLLNNITISQKMTGFQIHGMTEWKVTISTNCVCSQSEVKVDCKGFQTTESIDPSIL 61
           GNCQC L++I +SQ  TG  +    EW++T++  C+C+Q E+K+ CKGFQT E IDPSI+
Sbjct: 20  GNCQCTLDDIKVSQSQTGKTVPNKQEWRLTLNNTCICTQLELKLSCKGFQTVEPIDPSII 79

Query: 62  AISDTEC-LVNNGLPIFSSKPITFTYAQDPQFNFKPISSQISCS 105
           AIS  EC +VNNG P +    ++F YA D  F FKPISSQISCS
Sbjct: 80  AISGDECTVVNNGNPFYGFTTLSFNYAWDTSFPFKPISSQISCS 123

[Close]
BLAST of Lsi01G007440 vs. TrEMBL
Match: V4UMI7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009917mg PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 3.1e-25
Identity = 56/104 (53.85%), Postives = 73/104 (70.19%), Query Frame = 1 

Query: 2   GNCQCLLNNITISQKMTGFQIHGMTEWKVTISTNCVCSQSEVKVDCKGFQTTESIDPSIL 61
           GNCQC L++I +SQ  TG  +    EW++T++  C+C+Q  +K+ CKGFQT E IDPSI+
Sbjct: 20  GNCQCTLDDIKVSQSQTGKTVPNKQEWRLTLNNTCICTQLGLKLSCKGFQTVEPIDPSII 79

Query: 62  AISDTEC-LVNNGLPIFSSKPITFTYAQDPQFNFKPISSQISCS 105
           AIS  EC +VNNG P +    ++F YA D  F FKPISSQISCS
Sbjct: 80  AISGDECTVVNNGNPFYGFTTLSFNYAWDTSFPFKPISSQISCS 123

[Close]
BLAST of Lsi01G007440 vs. TAIR10
Match: AT4G32100.1 (AT4G32100.1 Beta-1,3-N-Acetylglucosaminyltransferase family protein)

HSP 1 Score: 55.5 bits (132), Expect = 2.3e-08
Identity = 28/97 (28.87%), Postives = 47/97 (48.45%), Query Frame = 1 

Query: 8   LNNITISQKMTGFQIHGMTEWKVTISTNCVCSQSEVKVDCKGFQTTESIDPSILAISDTE 67
           L ++++ Q  TG  +    EW+V +  +  C  +   + C  F++   ID  +L+ S   
Sbjct: 29  LESLSVIQSKTGNMVENKPEWEVKVLNSSPCYFTHTTLSCVRFKSVTPIDSKVLSKSGDT 88

Query: 68  CLVNNGLPIFSSKPITFTYAQDPQFNFKPISSQISCS 105
           CL+ NG  I     I+F Y  D  F+ K +   I+CS
Sbjct: 89  CLLGNGDSIHD---ISFKYVWDTSFDLKVVDGYIACS 122

[Close]
BLAST of Lsi01G007440 vs. TAIR10
Match: AT1G32583.1 (AT1G32583.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 47.0 bits (110), Expect = 8.3e-06
Identity = 28/101 (27.72%), Postives = 51/101 (50.50%), Query Frame = 1 

Query: 6   CLLNNITISQKMTGFQIHGMTEWKVTISTNCV--CSQSEVKVDCKGFQTTESIDPSILAI 65
           C  ++I + Q  T     G+  + V I  +CV  C+ +E+ V C  F +   ++P +   
Sbjct: 80  CSKDDIVLFQGSTNPLPSGVPSYTVEIFNSCVSDCNIAEIHVSCGWFSSVRLVNPRVFRR 139

Query: 66  SD-TECLVNNGLPIFSSKPITFTYAQDPQFNFKPISSQISC 104
            D  +CLVN+G P+   + ++F YA    F++    + +SC
Sbjct: 140 LDYDDCLVNDGQPLGPGQSLSFQYAN--SFSYPLSVASVSC 178

[Close]
BLAST of Lsi01G007440 vs. NCBI nr
Match: gi|659080150|ref|XP_008440637.1| (PREDICTED: uncharacterized protein LOC103484995 [Cucumis melo])

HSP 1 Score: 187.6 bits (475), Expect = 1.1e-44
Identity = 86/103 (83.50%), Postives = 95/103 (92.23%), Query Frame = 1 

Query: 2   GNCQCLLNNITISQKMTGFQIHGMTEWKVTISTNCVCSQSEVKVDCKGFQTTESIDPSIL 61
           GNCQC+LNNITISQKMTGFQIHGMTEW VTI+ NC+CSQS++K+DCKGF TT SIDPSIL
Sbjct: 20  GNCQCVLNNITISQKMTGFQIHGMTEWDVTITNNCICSQSDLKLDCKGFATTLSIDPSIL 79

Query: 62  AISDTECLVNNGLPIFSSKPITFTYAQDPQFNFKPISSQISCS 105
           +ISD ECLVNNG PIF+SKPITF YAQ P+FNFKPISSQISCS
Sbjct: 80  SISDNECLVNNGKPIFNSKPITFKYAQTPKFNFKPISSQISCS 122

[Close]
BLAST of Lsi01G007440 vs. NCBI nr
Match: gi|700193567|gb|KGN48771.1| (hypothetical protein Csa_6G500630 [Cucumis sativus])

HSP 1 Score: 185.3 bits (469), Expect = 5.6e-44
Identity = 84/103 (81.55%), Postives = 94/103 (91.26%), Query Frame = 1 

Query: 2   GNCQCLLNNITISQKMTGFQIHGMTEWKVTISTNCVCSQSEVKVDCKGFQTTESIDPSIL 61
           GNCQC LNNI ISQ MTGFQIHGMTEWKVTI+ NC+CSQS++K+DCKGF TT SIDPSIL
Sbjct: 20  GNCQCFLNNIKISQSMTGFQIHGMTEWKVTITNNCICSQSDLKLDCKGFATTLSIDPSIL 79

Query: 62  AISDTECLVNNGLPIFSSKPITFTYAQDPQFNFKPISSQISCS 105
           AISD+ECLVNNG PIF+S+PITF YAQ P+FNFKP+SSQISCS
Sbjct: 80  AISDSECLVNNGQPIFNSRPITFKYAQSPKFNFKPLSSQISCS 122

[Close]
BLAST of Lsi01G007440 vs. NCBI nr
Match: gi|700204940|gb|KGN60073.1| (hypothetical protein Csa_3G875970 [Cucumis sativus])

HSP 1 Score: 140.6 bits (353), Expect = 1.6e-30
Identity = 62/103 (60.19%), Postives = 77/103 (74.76%), Query Frame = 1 

Query: 2   GNCQCLLNNITISQKMTGFQIHGMTEWKVTISTNCVCSQSEVKVDCKGFQTTESIDPSIL 61
           GNC+C+LN+I ISQ  TG  + G   WK TI+ NC+C QS +K+DC GF T +++DPSIL
Sbjct: 20  GNCECVLNDIAISQTTTGSIVQGKQVWKATITNNCICGQSSLKLDCNGFNTVQAVDPSIL 79

Query: 62  AISDTECLVNNGLPIFSSKPITFTYAQDPQFNFKPISSQISCS 105
           A+S + CLVN G PIF S PI+FTYA D  F FKP+SSQISCS
Sbjct: 80  AVSGSVCLVNGGQPIFQSTPISFTYASDNAFPFKPLSSQISCS 122

[Close]
BLAST of Lsi01G007440 vs. NCBI nr
Match: gi|659133309|ref|XP_008466664.1| (PREDICTED: uncharacterized protein LOC103504019 [Cucumis melo])

HSP 1 Score: 132.5 bits (332), Expect = 4.3e-28
Identity = 58/102 (56.86%), Postives = 74/102 (72.55%), Query Frame = 1 

Query: 3   NCQCLLNNITISQKMTGFQIHGMTEWKVTISTNCVCSQSEVKVDCKGFQTTESIDPSILA 62
           NCQC +N+I ISQ  TG +++G  EW+ TI   CVCSQ  VK DC GF T E +D SIL 
Sbjct: 8   NCQCSINDIVISQSTTGKEVNGKQEWRATIRNKCVCSQYSVKFDCNGFNTVEKVDESILM 67

Query: 63  ISDTECLVNNGLPIFSSKPITFTYAQDPQFNFKPISSQISCS 105
           ++ + CLVNNG PIF+S PI+FTYA D  F+FKP+ SQ++CS
Sbjct: 68  VAGSVCLVNNGQPIFNSSPISFTYAWDNAFSFKPLFSQVACS 109

[Close]
BLAST of Lsi01G007440 vs. NCBI nr
Match: gi|700204942|gb|KGN60075.1| (hypothetical protein Csa_3G875990 [Cucumis sativus])

HSP 1 Score: 130.2 bits (326), Expect = 2.1e-27
Identity = 57/103 (55.34%), Postives = 73/103 (70.87%), Query Frame = 1 

Query: 2   GNCQCLLNNITISQKMTGFQIHGMTEWKVTISTNCVCSQSEVKVDCKGFQTTESIDPSIL 61
           GNC+C +N+I ISQ  TG +++G  EW+ TI   CVCSQ  VK DC GF T E +D SIL
Sbjct: 20  GNCECSMNDIEISQSTTGREVNGKQEWRATIRNKCVCSQYSVKFDCNGFNTVEKVDESIL 79

Query: 62  AISDTECLVNNGLPIFSSKPITFTYAQDPQFNFKPISSQISCS 105
            ++ + CLVNNG PIF+S PI+FTYA D  F F P+ SQ++CS
Sbjct: 80  MVAGSVCLVNNGQPIFNSSPISFTYAWDNAFPFSPLFSQVACS 122

The following BLAST results are available for this feature:
BLAST of Lsi01G007440 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi01G007440 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KLZ6_CUCSA3.9e-4481.55Uncharacterized protein OS=Cucumis sativus GN=Csa_6G500630 PE=4 SV=1[more]
A0A0A0LEA1_CUCSA1.1e-3060.19Uncharacterized protein OS=Cucumis sativus GN=Csa_3G875970 PE=4 SV=1[more]
A0A0A0LDN0_CUCSA1.5e-2755.34Uncharacterized protein OS=Cucumis sativus GN=Csa_3G875990 PE=4 SV=1[more]
A0A067F358_CITSI4.7e-2654.81Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g040068mg PE=4 SV=1[more]
V4UMI7_9ROSI3.1e-2553.85Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009917mg PE=4 SV=1[more]
BLAST of Lsi01G007440 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G32100.12.3e-0828.87 Beta-1,3-N-Acetylglucosaminyltransferase family protein[more]
AT1G32583.18.3e-0627.72 FUNCTIONS IN: molecular_function unknown[more]
BLAST of Lsi01G007440 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659080150|ref|XP_008440637.1|1.1e-4483.50PREDICTED: uncharacterized protein LOC103484995 [Cucumis melo][more]
gi|700193567|gb|KGN48771.1|5.6e-4481.55hypothetical protein Csa_6G500630 [Cucumis sativus][more]
gi|700204940|gb|KGN60073.1|1.6e-3060.19hypothetical protein Csa_3G875970 [Cucumis sativus][more]
gi|659133309|ref|XP_008466664.1|4.3e-2856.86PREDICTED: uncharacterized protein LOC103504019 [Cucumis melo][more]
gi|700204942|gb|KGN60075.1|2.1e-2755.34hypothetical protein Csa_3G875990 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0016740 transferase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi01G007440.1Lsi01G007440.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33184FAMILY NOT NAMEDcoord: 2..104
score: 7.3
NoneNo IPR availablePANTHERPTHR33184:SF11BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEINcoord: 2..104
score: 7.3