Cla97C01G018450 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C01G018450
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Beta-1,3-N-acetylglucosaminyltransferase family protein
Location	Cla97Chr01 : 31672265 .. 31672531 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTGGATTTCAGATCCATGGAATGACACAATGGAAAGTGACAATAAGCAACAACTGTTTGTGTTCTCAGTCAGAGGTGAAAGTAGATTGCAAAGGATTTCAAACAACTGAAAGCATTGATCCTTCCATCTTGGCCATTTCTGATACTGAATGTTTGGTCAACAATGGCCTCCCAATTTTCAGTTCCAAACCCATCACCTTCACTTATGCACGAGACCCTAAATTCGATTTCAACCCAATTTCCTCCCAGATTTCTTGTTCTTAA

mRNA sequence

ATGAGTGGATTTCAGATCCATGGAATGACACAATGGAAAGTGACAATAAGCAACAACTGTTTGTGTTCTCAGTCAGAGGTGAAAGTAGATTGCAAAGGATTTCAAACAACTGAAAGCATTGATCCTTCCATCTTGGCCATTTCTGATACTGAATGTTTGGTCAACAATGGCCTCCCAATTTTCAGTTCCAAACCCATCACCTTCACTTATGCACGAGACCCTAAATTCGATTTCAACCCAATTTCCTCCCAGATTTCTTGTTCTTAA

Coding sequence (CDS)

ATGAGTGGATTTCAGATCCATGGAATGACACAATGGAAAGTGACAATAAGCAACAACTGTTTGTGTTCTCAGTCAGAGGTGAAAGTAGATTGCAAAGGATTTCAAACAACTGAAAGCATTGATCCTTCCATCTTGGCCATTTCTGATACTGAATGTTTGGTCAACAATGGCCTCCCAATTTTCAGTTCCAAACCCATCACCTTCACTTATGCACGAGACCCTAAATTCGATTTCAACCCAATTTCCTCCCAGATTTCTTGTTCTTAA

Protein sequence

MSGFQIHGMTQWKVTISNNCLCSQSEVKVDCKGFQTTESIDPSILAISDTECLVNNGLPIFSSKPITFTYARDPKFDFNPISSQISCS

Homology

[Close]

BLAST of Cla97C01G018450 vs. NCBI nr
Match: XP_023518832.1 (uncharacterized protein LOC111782230 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 161.4 bits (407), Expect = 1.4e-36
Identity = 71/88 (80.68%), Postives = 82/88 (93.18%), Query Frame = 0


Query: 1   MSGFQIHGMTQWKVTISNNCLCSQSEVKVDCKGFQTTESIDPSILAISDTECLVNNGLPI 60
           M+GFQIHGMT+W VTISNNCLCSQSEVK+DC+GFQTT+S+DPSILA++DTECLVNNGLPI
Sbjct: 35  MTGFQIHGMTEWNVTISNNCLCSQSEVKLDCRGFQTTKSVDPSILAVTDTECLVNNGLPI 94

Query: 61  FSSKPITFTYARDPKFDFNPISSQISCS 89
           F S P+ FTYA+DPKFDF  ISSQI+CS
Sbjct: 95  FKSNPVIFTYAQDPKFDFKLISSQIACS 122

[Close]

BLAST of Cla97C01G018450 vs. NCBI nr
Match: XP_022962948.1 (uncharacterized protein At1g05835-like [Cucurbita moschata])

HSP 1 Score: 159.1 bits (401), Expect = 7.0e-36
Identity = 70/88 (79.55%), Postives = 83/88 (94.32%), Query Frame = 0


Query: 1   MSGFQIHGMTQWKVTISNNCLCSQSEVKVDCKGFQTTESIDPSILAISDTECLVNNGLPI 60
           M+GFQIHGMT+W  T+SNNCLCSQSEVK+DC+GFQTT+SIDP ILAI+DTECLVNNGLPI
Sbjct: 35  MTGFQIHGMTEWNTTVSNNCLCSQSEVKLDCRGFQTTKSIDPLILAITDTECLVNNGLPI 94

Query: 61  FSSKPITFTYARDPKFDFNPISSQISCS 89
           F+S PITFTYA++P+F+F PISSQI+CS
Sbjct: 95  FNSTPITFTYAQNPQFNFKPISSQIACS 122

[Close]

BLAST of Cla97C01G018450 vs. NCBI nr
Match: XP_023004032.1 (protein TAPETUM DETERMINANT 1-like [Cucurbita maxima])

HSP 1 Score: 156.8 bits (395), Expect = 3.5e-35
Identity = 71/88 (80.68%), Postives = 80/88 (90.91%), Query Frame = 0


Query: 1   MSGFQIHGMTQWKVTISNNCLCSQSEVKVDCKGFQTTESIDPSILAISDTECLVNNGLPI 60
           MSGFQIHGMT+W VTISN CLCSQSEVK+DC+GFQTT+SIDPS+LA++D+ECLVNNGLPI
Sbjct: 35  MSGFQIHGMTEWNVTISNICLCSQSEVKLDCRGFQTTKSIDPSVLAVTDSECLVNNGLPI 94

Query: 61  FSSKPITFTYARDPKFDFNPISSQISCS 89
           F S  ITFTYA DPKFDF  ISSQI+CS
Sbjct: 95  FKSNSITFTYAHDPKFDFKLISSQINCS 122

[Close]

BLAST of Cla97C01G018450 vs. NCBI nr
Match: KGN48771.1 (hypothetical protein Csa_6G500630 [Cucumis sativus])

HSP 1 Score: 156.0 bits (393), Expect = 5.9e-35
Identity = 69/88 (78.41%), Postives = 82/88 (93.18%), Query Frame = 0


Query: 1   MSGFQIHGMTQWKVTISNNCLCSQSEVKVDCKGFQTTESIDPSILAISDTECLVNNGLPI 60
           M+GFQIHGMT+WKVTI+NNC+CSQS++K+DCKGF TT SIDPSILAISD+ECLVNNG PI
Sbjct: 35  MTGFQIHGMTEWKVTITNNCICSQSDLKLDCKGFATTLSIDPSILAISDSECLVNNGQPI 94

Query: 61  FSSKPITFTYARDPKFDFNPISSQISCS 89
           F+S+PITF YA+ PKF+F P+SSQISCS
Sbjct: 95  FNSRPITFKYAQSPKFNFKPLSSQISCS 122

[Close]

BLAST of Cla97C01G018450 vs. NCBI nr
Match: XP_008440637.1 (PREDICTED: protein TAPETUM DETERMINANT 1-like [Cucumis melo])

HSP 1 Score: 153.7 bits (387), Expect = 2.9e-34
Identity = 69/88 (78.41%), Postives = 80/88 (90.91%), Query Frame = 0


Query: 1   MSGFQIHGMTQWKVTISNNCLCSQSEVKVDCKGFQTTESIDPSILAISDTECLVNNGLPI 60
           M+GFQIHGMT+W VTI+NNC+CSQS++K+DCKGF TT SIDPSIL+ISD ECLVNNG PI
Sbjct: 35  MTGFQIHGMTEWDVTITNNCICSQSDLKLDCKGFATTLSIDPSILSISDNECLVNNGKPI 94

Query: 61  FSSKPITFTYARDPKFDFNPISSQISCS 89
           F+SKPITF YA+ PKF+F PISSQISCS
Sbjct: 95  FNSKPITFKYAQTPKFNFKPISSQISCS 122

[Close]

BLAST of Cla97C01G018450 vs. TrEMBL
Match: tr|A0A0A0KLZ6|A0A0A0KLZ6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G500630 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 3.9e-35
Identity = 69/88 (78.41%), Postives = 82/88 (93.18%), Query Frame = 0


Query: 1   MSGFQIHGMTQWKVTISNNCLCSQSEVKVDCKGFQTTESIDPSILAISDTECLVNNGLPI 60
           M+GFQIHGMT+WKVTI+NNC+CSQS++K+DCKGF TT SIDPSILAISD+ECLVNNG PI
Sbjct: 35  MTGFQIHGMTEWKVTITNNCICSQSDLKLDCKGFATTLSIDPSILAISDSECLVNNGQPI 94

Query: 61  FSSKPITFTYARDPKFDFNPISSQISCS 89
           F+S+PITF YA+ PKF+F P+SSQISCS
Sbjct: 95  FNSRPITFKYAQSPKFNFKPLSSQISCS 122

[Close]

BLAST of Cla97C01G018450 vs. TrEMBL
Match: tr|A0A1S3B1L8|A0A1S3B1L8_CUCME (protein TAPETUM DETERMINANT 1-like OS=Cucumis melo OX=3656 GN=LOC103484995 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 1.9e-34
Identity = 69/88 (78.41%), Postives = 80/88 (90.91%), Query Frame = 0


Query: 1   MSGFQIHGMTQWKVTISNNCLCSQSEVKVDCKGFQTTESIDPSILAISDTECLVNNGLPI 60
           M+GFQIHGMT+W VTI+NNC+CSQS++K+DCKGF TT SIDPSIL+ISD ECLVNNG PI
Sbjct: 35  MTGFQIHGMTEWDVTITNNCICSQSDLKLDCKGFATTLSIDPSILSISDNECLVNNGKPI 94

Query: 61  FSSKPITFTYARDPKFDFNPISSQISCS 89
           F+SKPITF YA+ PKF+F PISSQISCS
Sbjct: 95  FNSKPITFKYAQTPKFNFKPISSQISCS 122

[Close]

BLAST of Cla97C01G018450 vs. TrEMBL
Match: tr|A0A0A0LEA1|A0A0A0LEA1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G875970 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.5e-23
Identity = 51/87 (58.62%), Postives = 64/87 (73.56%), Query Frame = 0


Query: 2   SGFQIHGMTQWKVTISNNCLCSQSEVKVDCKGFQTTESIDPSILAISDTECLVNNGLPIF 61
           +G  + G   WK TI+NNC+C QS +K+DC GF T +++DPSILA+S + CLVN G PIF
Sbjct: 36  TGSIVQGKQVWKATITNNCICGQSSLKLDCNGFNTVQAVDPSILAVSGSVCLVNGGQPIF 95

Query: 62  SSKPITFTYARDPKFDFNPISSQISCS 89
            S PI+FTYA D  F F P+SSQISCS
Sbjct: 96  QSTPISFTYASDNAFPFKPLSSQISCS 122

[Close]

BLAST of Cla97C01G018450 vs. TrEMBL
Match: tr|A0A0A0LDN0|A0A0A0LDN0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G875990 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 4.2e-21
Identity = 46/87 (52.87%), Postives = 63/87 (72.41%), Query Frame = 0


Query: 2   SGFQIHGMTQWKVTISNNCLCSQSEVKVDCKGFQTTESIDPSILAISDTECLVNNGLPIF 61
           +G +++G  +W+ TI N C+CSQ  VK DC GF T E +D SIL ++ + CLVNNG PIF
Sbjct: 36  TGREVNGKQEWRATIRNKCVCSQYSVKFDCNGFNTVEKVDESILMVAGSVCLVNNGQPIF 95

Query: 62  SSKPITFTYARDPKFDFNPISSQISCS 89
           +S PI+FTYA D  F F+P+ SQ++CS
Sbjct: 96  NSSPISFTYAWDNAFPFSPLFSQVACS 122

[Close]

BLAST of Cla97C01G018450 vs. TrEMBL
Match: tr|A0A1S2XNU0|A0A1S2XNU0_CICAR (protein TAPETUM DETERMINANT 1-like OS=Cicer arietinum OX=3827 GN=LOC101497585 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 5.5e-21
Identity = 49/83 (59.04%), Postives = 63/83 (75.90%), Query Frame = 0


Query: 7   HGMTQWKVTISNNCLCSQSEVKVDCKGFQTTESIDPSILA-ISDTECLVNNGLPIFSSKP 66
           HGM  W V I+NNC+C+QS++K++CKGFQT  S+DP IL   S+ ECLVN G PI+ +KP
Sbjct: 41  HGMPVWSVNITNNCICTQSQLKLNCKGFQTYLSVDPEILGDPSNDECLVNQGEPIYYAKP 100

Query: 67  ITFTYARDPKFDFNPISSQISCS 89
           + F YA DPKF F PI S+I+CS
Sbjct: 101 LNFAYAWDPKFPFQPIYSKIACS 123

[Close]

BLAST of Cla97C01G018450 vs. Swiss-Prot
Match: sp|A8MS78|Y1583_ARATH (Uncharacterized protein At1g05835 OS=Arabidopsis thaliana OX=3702 GN=At1g05835 PE=2 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 7.4e-05
Identity = 23/81 (28.40%), Postives = 46/81 (56.79%), Query Frame = 0


Query: 11  QWKVTISNNC-LCSQSEVKVDCKGFQTTESIDPS---ILAISDTECLVNNGLPIFSSKPI 70
           +++V + N C +C    +++ C+GF  +  +DP+   +L+ S   C+VN+GLP+   + +
Sbjct: 47  KFRVEVMNKCPMCPIINLRLKCQGFPQS-LVDPTFLRVLSSSAGNCVVNDGLPLSPMQTL 106

Query: 71  TFTYARDPKFDFNPISSQISC 88
           +F Y+   +F   P+S    C
Sbjct: 107 SFNYSNTHQFALRPLSWSFQC 126

[Close]

BLAST of Cla97C01G018450 vs. TAIR10
Match: AT4G32090.1 (Beta-1,3-N-Acetylglucosaminyltransferase family protein)

HSP 1 Score: 60.8 bits (146), Expect = 4.7e-10
Identity = 29/87 (33.33%), Postives = 44/87 (50.57%), Query Frame = 0


Query: 2   SGFQIHGMTQWKVTISNNCLCSQSEVKVDCKGFQTTESIDPSILAISDTECLVNNGLPIF 61
           +G +I G  +WKVT+ N C C Q  V + C GF   + + P +L      CL+  G  + 
Sbjct: 36  TGREIGGQPEWKVTVINTCNCFQKHVTLSCGGFAPAKPVKPLLLQPQGNTCLMIKGAALP 95

Query: 62  SSKPITFTYARDPKFDFNPISSQISCS 89
           +     FTYA  P + F P+ S++  S
Sbjct: 96  AGATAQFTYAGQP-YIFRPVGSKVDPS 121

[Close]

BLAST of Cla97C01G018450 vs. TAIR10
Match: AT1G05835.1 (PHD finger protein)

HSP 1 Score: 47.8 bits (112), Expect = 4.1e-06
Identity = 23/81 (28.40%), Postives = 46/81 (56.79%), Query Frame = 0


Query: 11  QWKVTISNNC-LCSQSEVKVDCKGFQTTESIDPS---ILAISDTECLVNNGLPIFSSKPI 70
           +++V + N C +C    +++ C+GF  +  +DP+   +L+ S   C+VN+GLP+   + +
Sbjct: 47  KFRVEVMNKCPMCPIINLRLKCQGFPQS-LVDPTFLRVLSSSAGNCVVNDGLPLSPMQTL 106

Query: 71  TFTYARDPKFDFNPISSQISC 88
           +F Y+   +F   P+S    C
Sbjct: 107 SFNYSNTHQFALRPLSWSFQC 126

The following BLAST results are available for this feature:

BLAST of Cla97C01G018450 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023518832.1	1.4e-36	80.68	uncharacterized protein LOC111782230 [Cucurbita pepo subsp. pepo]	[more]
XP_022962948.1	7.0e-36	79.55	uncharacterized protein At1g05835-like [Cucurbita moschata]	[more]
XP_023004032.1	3.5e-35	80.68	protein TAPETUM DETERMINANT 1-like [Cucurbita maxima]	[more]
KGN48771.1	5.9e-35	78.41	hypothetical protein Csa_6G500630 [Cucumis sativus]	[more]
XP_008440637.1	2.9e-34	78.41	PREDICTED: protein TAPETUM DETERMINANT 1-like [Cucumis melo]	[more]

BLAST of Cla97C01G018450 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KLZ6\|A0A0A0KLZ6_CUCSA	3.9e-35	78.41	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G500630 PE=4 SV=1	[more]
tr\|A0A1S3B1L8\|A0A1S3B1L8_CUCME	1.9e-34	78.41	protein TAPETUM DETERMINANT 1-like OS=Cucumis melo OX=3656 GN=LOC103484995 PE=4 ...	[more]
tr\|A0A0A0LEA1\|A0A0A0LEA1_CUCSA	1.5e-23	58.62	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G875970 PE=4 SV=1	[more]
tr\|A0A0A0LDN0\|A0A0A0LDN0_CUCSA	4.2e-21	52.87	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G875990 PE=4 SV=1	[more]
tr\|A0A1S2XNU0\|A0A1S2XNU0_CICAR	5.5e-21	59.04	protein TAPETUM DETERMINANT 1-like OS=Cicer arietinum OX=3827 GN=LOC101497585 PE...	[more]

BLAST of Cla97C01G018450 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|A8MS78\|Y1583_ARATH	7.4e-05	28.40	Uncharacterized protein At1g05835 OS=Arabidopsis thaliana OX=3702 GN=At1g05835 P...	[more]

BLAST of Cla97C01G018450 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G32090.1	4.7e-10	33.33	Beta-1,3-N-Acetylglucosaminyltransferase family protein	[more]
AT1G05835.1	4.1e-06	28.40	PHD finger protein	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0016757	transferase activity, transferring glycosyl groups
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C01G018450.1	Cla97C01G018450.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33184:SF11	BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN	coord: 5..88
None	No IPR available	PANTHER	PTHR33184	FAMILY NOT NAMED	coord: 5..88

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C01G018450	Csa6G500630	Cucumber (Chinese Long) v2	cuwmbB412
Cla97C01G018450	CSPI06G30440	Wild cucumber (PI 183967)	cpiwmbB433
Cla97C01G018450	Cucsa.104590	Cucumber (Gy14) v1	cgywmbB127
Cla97C01G018450	CmaCh07G005270	Cucurbita maxima (Rimu)	cmawmbB875
Cla97C01G018450	CmoCh07G005250	Cucurbita moschata (Rifu)	cmowmbB849
Cla97C01G018450	Lsi01G007440	Bottle gourd (USVL1VR-Ls)	lsiwmbB115
Cla97C01G018450	CsGy6G029930	Cucumber (Gy14) v2	cgybwmbB394
Cla97C01G018450	MELO3C033004.2	Melon (DHL92) v3.6.1	medwmbB505
Cla97C01G018450	Carg16010	Silver-seed gourd	carwmbB0791
Cla97C01G018450	CsaV3_6G045660	Cucumber (Chinese Long) v3	cucwmbB430

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C01G018450	Watermelon (97103) v2	wmbwmbB037
Cla97C01G018450	Silver-seed gourd	carwmbB0426
Cla97C01G018450	Silver-seed gourd	carwmbB0987
Cla97C01G018450	Silver-seed gourd	carwmbB1073
Cla97C01G018450	Cucumber (Gy14) v2	cgybwmbB254
Cla97C01G018450	Cucurbita maxima (Rimu)	cmawmbB331
Cla97C01G018450	Cucurbita maxima (Rimu)	cmawmbB670
Cla97C01G018450	Cucurbita maxima (Rimu)	cmawmbB712
Cla97C01G018450	Cucurbita moschata (Rifu)	cmowmbB314
Cla97C01G018450	Cucurbita moschata (Rifu)	cmowmbB642
Cla97C01G018450	Cucurbita moschata (Rifu)	cmowmbB682
Cla97C01G018450	Wild cucumber (PI 183967)	cpiwmbB273
Cla97C01G018450	Cucumber (Chinese Long) v3	cucwmbB268
Cla97C01G018450	Cucumber (Chinese Long) v2	cuwmbB266
Cla97C01G018450	Bottle gourd (USVL1VR-Ls)	lsiwmbB389
Cla97C01G018450	Melon (DHL92) v3.6.1	medwmbB451
Cla97C01G018450	Melon (DHL92) v3.5.1	mewmbB457
Cla97C01G018450	Melon (DHL92) v3.5.1	mewmbB513
Cla97C01G018450	Watermelon (Charleston Gray)	wcgwmbB089
Cla97C01G018450	Watermelon (Charleston Gray)	wcgwmbB288
Cla97C01G018450	Watermelon (97103) v1	wmwmbB146
Cla97C01G018450	Watermelon (97103) v1	wmwmbB234
Cla97C01G018450	Wax gourd	wgowmbB171
Cla97C01G018450	Wax gourd	wgowmbB398