Lsi01G004910 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi01G004910
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Peroxiredoxin Q, chloroplastic
Location	chr01 : 4053087 .. 4053617 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCACCTCTTTCACAACTCCATTCTTCCCCACTTTCAAGCCCCCACTTATTTCTTCTCCTTTATTTCAAATCAAGGCCATTTCCCCTCTCAGAACCCCTTTCCGGCCACTCGCTTCCTCTGCGCCGCCGCAATCTCCCGCCAAACCCTTAAAAATCCCTCACCCGTCGGATTTCAAGATAATCGAAGCAACCCCAAGTGGGAACTCAAGGTTTTTGATCATCGGAGCCGTCTCGGTGGGCGTTGCCCTGTTTCTGTTAGGTTGCGACGGCGAAAGGGCTTTGGCTTTGGGCCCTGAAGGCCCGTTGGTGGAGGAATTTTGGGACAATGTTAGAAGATATGCAATTTACGCCCTTACTGTGAGTACTGGTGCTATTTACACTATTCTTCTCCCTATTTTGGAACTGTTGAAGAACCCCATTACTGCTGTTCTTGTTGTGGCTATTTTTGGGGGTGCCATTTTCATTATCTCTCAAGTTCTTTCTGCTATGGTTGGTGTCACTGAGTTTTCTTATGATTATTCCTATTGA

mRNA sequence

ATGGCCACCTCTTTCACAACTCCATTCTTCCCCACTTTCAAGCCCCCACTTATTTCTTCTCCTTTATTTCAAATCAAGGCCATTTCCCCTCTCAGAACCCCTTTCCGGCCACTCGCTTCCTCTGCGCCGCCGCAATCTCCCGCCAAACCCTTAAAAATCCCTCACCCGTCGGATTTCAAGATAATCGAAGCAACCCCAAGTGGGAACTCAAGGTTTTTGATCATCGGAGCCGTCTCGGTGGGCGTTGCCCTGTTTCTGTTAGGTTGCGACGGCGAAAGGGCTTTGGCTTTGGGCCCTGAAGGCCCGTTGGTGGAGGAATTTTGGGACAATGTTAGAAGATATGCAATTTACGCCCTTACTGTGAGTACTGGTGCTATTTACACTATTCTTCTCCCTATTTTGGAACTGTTGAAGAACCCCATTACTGCTGTTCTTGTTGTGGCTATTTTTGGGGGTGCCATTTTCATTATCTCTCAAGTTCTTTCTGCTATGGTTGGTGTCACTGAGTTTTCTTATGATTATTCCTATTGA

Coding sequence (CDS)

ATGGCCACCTCTTTCACAACTCCATTCTTCCCCACTTTCAAGCCCCCACTTATTTCTTCTCCTTTATTTCAAATCAAGGCCATTTCCCCTCTCAGAACCCCTTTCCGGCCACTCGCTTCCTCTGCGCCGCCGCAATCTCCCGCCAAACCCTTAAAAATCCCTCACCCGTCGGATTTCAAGATAATCGAAGCAACCCCAAGTGGGAACTCAAGGTTTTTGATCATCGGAGCCGTCTCGGTGGGCGTTGCCCTGTTTCTGTTAGGTTGCGACGGCGAAAGGGCTTTGGCTTTGGGCCCTGAAGGCCCGTTGGTGGAGGAATTTTGGGACAATGTTAGAAGATATGCAATTTACGCCCTTACTGTGAGTACTGGTGCTATTTACACTATTCTTCTCCCTATTTTGGAACTGTTGAAGAACCCCATTACTGCTGTTCTTGTTGTGGCTATTTTTGGGGGTGCCATTTTCATTATCTCTCAAGTTCTTTCTGCTATGGTTGGTGTCACTGAGTTTTCTTATGATTATTCCTATTGA

Protein sequence

MATSFTTPFFPTFKPPLISSPLFQIKAISPLRTPFRPLASSAPPQSPAKPLKIPHPSDFKIIEATPSGNSRFLIIGAVSVGVALFLLGCDGERALALGPEGPLVEEFWDNVRRYAIYALTVSTGAIYTILLPILELLKNPITAVLVVAIFGGAIFIISQVLSAMVGVTEFSYDYSY

Homology

[Close]

BLAST of Lsi01G004910 vs. TrEMBL
Match: A0A0A0KHP7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511100 PE=4 SV=1)

HSP 1 Score: 310.8 bits (795), Expect = 1.0e-81
Identity = 161/176 (91.48%), Postives = 167/176 (94.89%), Query Frame = 1


Query: 1   MATSFTTPFFPTFKPPLISSPLFQIKAISPLRTPFRPLASSAPPQSPAKPLKIPHPSDFK 60
           MATSF TPFFPTFK PLIS P F IK ISP+RTPFRPLASSAPPQSPAKPLKIPHP+DFK
Sbjct: 1   MATSFVTPFFPTFKTPLISLPSFPIKPISPIRTPFRPLASSAPPQSPAKPLKIPHPTDFK 60

Query: 61  IIEATPSGNSRFLIIGAVSVGVALFLLGCDGERALALGPEGPLVEEFWDNVRRYAIYALT 120
            IEATPSG SRFLIIGAVSVGVALFL+GCDGERALALGPEGPLVEEFWDNVRRYA+YALT
Sbjct: 61  TIEATPSGKSRFLIIGAVSVGVALFLIGCDGERALALGPEGPLVEEFWDNVRRYALYALT 120

Query: 121 VSTGAIYTILLPILELLKNPITAVLVVAIFGGAIFIISQVLSAMVGVTEFSYDYSY 177
           VSTGAIYTILLPILELLKNPITAVLV+ IFGGAIFIISQVLSAMVGVTEFSYDY+Y
Sbjct: 121 VSTGAIYTILLPILELLKNPITAVLVLVIFGGAIFIISQVLSAMVGVTEFSYDYTY 176

[Close]

BLAST of Lsi01G004910 vs. TrEMBL
Match: D7T5G1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0194g00160 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 2.1e-42
Identity = 103/176 (58.52%), Postives = 129/176 (73.30%), Query Frame = 1


Query: 11  PTFKPPLISSPLFQI--KAISPLRTPFRPLASSAPPQSPA-KPL-------KIPHPSDFK 70
           PT  P   ++PLF I  K  S L  P +P + S P +    KPL       +   PS  +
Sbjct: 104 PTNLPTPTANPLFLIPFKPRSSLNHPAKPSSVSLPSRGHINKPLVSSGLTPRSQKPSKEE 163

Query: 71  IIEATPSGNSRFLIIGAVSVGVALFLLGCDGERALALGPEGPLVEEFWDNVRRYAIYALT 130
             + + +G SRF++IGAVSVGV L L+G D  +ALALGPEGPL+EEFWDNVRRYA+Y LT
Sbjct: 164 FCQVSANGCSRFVMIGAVSVGVVLLLMGVDEHKALALGPEGPLMEEFWDNVRRYALYFLT 223

Query: 131 VSTGAIYTILLPILELLKNPITAVLVVAIFGGAIFIISQVLSAMVGVTEFSYDYSY 177
           VSTGA+YT+ +PILELLKNPI+A+LV+ IFGG++FI+SQV+SAMVGVTEFSYDYSY
Sbjct: 224 VSTGAVYTVFVPILELLKNPISAILVLVIFGGSLFIVSQVISAMVGVTEFSYDYSY 279

[Close]

BLAST of Lsi01G004910 vs. TrEMBL
Match: D7TZ28_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s1543g00010 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 1.8e-41
Identity = 101/176 (57.39%), Postives = 128/176 (72.73%), Query Frame = 1


Query: 11  PTFKPPLISSPLFQI--KAISPLRTPFRPLASSAPPQSPA-KPL-------KIPHPSDFK 70
           PT  P   ++PLF I  K    L  P +P + S P +    KPL       +   PS  +
Sbjct: 104 PTNLPTPTANPLFLIPFKPRPSLNHPAKPSSVSLPSRGHINKPLVSSGLTPRSQKPSKEE 163

Query: 71  IIEATPSGNSRFLIIGAVSVGVALFLLGCDGERALALGPEGPLVEEFWDNVRRYAIYALT 130
             + + +G SRF++IGAVSVGV L L+G D  +ALALGPEGPL+EEFWDNVRRYA+Y LT
Sbjct: 164 FCQVSANGCSRFVMIGAVSVGVVLLLMGVDEHKALALGPEGPLMEEFWDNVRRYALYFLT 223

Query: 131 VSTGAIYTILLPILELLKNPITAVLVVAIFGGAIFIISQVLSAMVGVTEFSYDYSY 177
           VSTGA+YT+ +PILELLKNPI+A+LV+ IFGG+++I+SQV+SAMVGVTEFSYDYSY
Sbjct: 224 VSTGAVYTVFVPILELLKNPISAILVLVIFGGSLYIVSQVISAMVGVTEFSYDYSY 279

[Close]

BLAST of Lsi01G004910 vs. TrEMBL
Match: A5ADD6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_023242 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 2.3e-41
Identity = 100/172 (58.14%), Postives = 127/172 (73.84%), Query Frame = 1


Query: 15  PPLISSPLFQI--KAISPLRTPFRPLASSAPPQSPA-KPL-------KIPHPSDFKIIEA 74
           P   ++PLF I  K  S L  P +P + S P +    KPL       +   PS  +  + 
Sbjct: 95  PTPTANPLFLIPFKPRSSLNHPAKPSSVSLPSRGHINKPLVSSGLTPRSQKPSKEEFCQV 154

Query: 75  TPSGNSRFLIIGAVSVGVALFLLGCDGERALALGPEGPLVEEFWDNVRRYAIYALTVSTG 134
           + +G SRF++IGAVSVGV L L+G D  +ALALGPEGPL+EEFWDNVRRYA+Y LTVSTG
Sbjct: 155 SANGCSRFVMIGAVSVGVVLLLMGVDEHKALALGPEGPLMEEFWDNVRRYALYFLTVSTG 214

Query: 135 AIYTILLPILELLKNPITAVLVVAIFGGAIFIISQVLSAMVGVTEFSYDYSY 177
           A+YT+ +PILELLKNPI+A+LV+ IFGG+++I+SQV+SAMVGVTEFSYDYSY
Sbjct: 215 AVYTVFVPILELLKNPISAILVLVIFGGSLYIVSQVISAMVGVTEFSYDYSY 266

[Close]

BLAST of Lsi01G004910 vs. TrEMBL
Match: A0A061GIF1_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_030411 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 6.3e-39
Identity = 80/117 (68.38%), Postives = 103/117 (88.03%), Query Frame = 1


Query: 60  KIIEATPSGNSRFLIIGAVSVGVALFLLGCDGERALALGPEGPLVEEFWDNVRRYAIYAL 119
           ++ + +  G SRF+I+GAVS+G+AL L+G D ++ALA GPEGPL+EEFWDNVRRYA+YAL
Sbjct: 78  ELTQVSSIGYSRFVIVGAVSIGLALLLMGADDQKALAFGPEGPLMEEFWDNVRRYALYAL 137

Query: 120 TVSTGAIYTILLPILELLKNPITAVLVVAIFGGAIFIISQVLSAMVGVTEFSYDYSY 177
           TVSTGAIYTI  PILELLKNPI+A+L++ I GG+I+I+SQ+LSAMVGVT+FSY Y+Y
Sbjct: 138 TVSTGAIYTIFQPILELLKNPISAILILVIIGGSIYIVSQILSAMVGVTDFSYSYAY 194

[Close]

BLAST of Lsi01G004910 vs. TAIR10
Match: AT4G16410.1 (AT4G16410.1 unknown protein)

HSP 1 Score: 141.7 bits (356), Expect = 4.2e-34
Identity = 68/107 (63.55%), Postives = 89/107 (83.18%), Query Frame = 1


Query: 71  RFLIIGAVSVGVALFL-LGCDGERALALGPEGPLVEEFWDNVRRYAIYALTVSTGAIYTI 130
           R+ ++G VSVG+ + L LG D E+A+ALGPEGPL+EEFWDNVRRY +YALTVSTGA+  +
Sbjct: 79  RYAVVGGVSVGLMMVLVLGMDAEKAMALGPEGPLMEEFWDNVRRYGLYALTVSTGALSAV 138

Query: 131 LLPILELLKNPITAVLVVAIFGGAIFIISQVLSAMVGVTEFSYDYSY 177
             PI ELLKNPI+A+L++ I GG+ +I+SQV+SAM+GV EF+Y YSY
Sbjct: 139 FEPIFELLKNPISAILILLILGGSFYIVSQVVSAMIGVNEFAYQYSY 185

[Close]

BLAST of Lsi01G004910 vs. NCBI nr
Match: gi|449434036|ref|XP_004134802.1| (PREDICTED: uncharacterized protein LOC101208124 [Cucumis sativus])

HSP 1 Score: 310.8 bits (795), Expect = 1.5e-81
Identity = 161/176 (91.48%), Postives = 167/176 (94.89%), Query Frame = 1


Query: 1   MATSFTTPFFPTFKPPLISSPLFQIKAISPLRTPFRPLASSAPPQSPAKPLKIPHPSDFK 60
           MATSF TPFFPTFK PLIS P F IK ISP+RTPFRPLASSAPPQSPAKPLKIPHP+DFK
Sbjct: 1   MATSFVTPFFPTFKTPLISLPSFPIKPISPIRTPFRPLASSAPPQSPAKPLKIPHPTDFK 60

Query: 61  IIEATPSGNSRFLIIGAVSVGVALFLLGCDGERALALGPEGPLVEEFWDNVRRYAIYALT 120
            IEATPSG SRFLIIGAVSVGVALFL+GCDGERALALGPEGPLVEEFWDNVRRYA+YALT
Sbjct: 61  TIEATPSGKSRFLIIGAVSVGVALFLIGCDGERALALGPEGPLVEEFWDNVRRYALYALT 120

Query: 121 VSTGAIYTILLPILELLKNPITAVLVVAIFGGAIFIISQVLSAMVGVTEFSYDYSY 177
           VSTGAIYTILLPILELLKNPITAVLV+ IFGGAIFIISQVLSAMVGVTEFSYDY+Y
Sbjct: 121 VSTGAIYTILLPILELLKNPITAVLVLVIFGGAIFIISQVLSAMVGVTEFSYDYTY 176

[Close]

BLAST of Lsi01G004910 vs. NCBI nr
Match: gi|659079116|ref|XP_008440084.1| (PREDICTED: uncharacterized protein LOC103484667 [Cucumis melo])

HSP 1 Score: 299.7 bits (766), Expect = 3.4e-78
Identity = 157/176 (89.20%), Postives = 162/176 (92.05%), Query Frame = 1


Query: 1   MATSFTTPFFPTFKPPLISSPLFQIKAISPLRTPFRPLASSAPPQSPAKPLKIPHPSDFK 60
           MATSF TPFFPTF+  LI  P F +K I P+RTPFRPLASSA PQSPAKPLKIPHPSDFK
Sbjct: 1   MATSFITPFFPTFRTSLIPLPSFPVKPIPPIRTPFRPLASSASPQSPAKPLKIPHPSDFK 60

Query: 61  IIEATPSGNSRFLIIGAVSVGVALFLLGCDGERALALGPEGPLVEEFWDNVRRYAIYALT 120
            IEATPSG SRFLIIGAVSVGVALFL+GCD ERALALGPEGPLVEEFWDNVRRYAIYALT
Sbjct: 61  TIEATPSGKSRFLIIGAVSVGVALFLIGCDSERALALGPEGPLVEEFWDNVRRYAIYALT 120

Query: 121 VSTGAIYTILLPILELLKNPITAVLVVAIFGGAIFIISQVLSAMVGVTEFSYDYSY 177
           VSTGAIYTILLPILELLKNPITAVLV+ IFGGAIFIISQVLSAMVGVTEFSYDYSY
Sbjct: 121 VSTGAIYTILLPILELLKNPITAVLVLVIFGGAIFIISQVLSAMVGVTEFSYDYSY 176

[Close]

BLAST of Lsi01G004910 vs. NCBI nr
Match: gi|297736708|emb|CBI25744.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 180.3 bits (456), Expect = 3.0e-42
Identity = 103/176 (58.52%), Postives = 129/176 (73.30%), Query Frame = 1


Query: 11  PTFKPPLISSPLFQI--KAISPLRTPFRPLASSAPPQSPA-KPL-------KIPHPSDFK 70
           PT  P   ++PLF I  K  S L  P +P + S P +    KPL       +   PS  +
Sbjct: 104 PTNLPTPTANPLFLIPFKPRSSLNHPAKPSSVSLPSRGHINKPLVSSGLTPRSQKPSKEE 163

Query: 71  IIEATPSGNSRFLIIGAVSVGVALFLLGCDGERALALGPEGPLVEEFWDNVRRYAIYALT 130
             + + +G SRF++IGAVSVGV L L+G D  +ALALGPEGPL+EEFWDNVRRYA+Y LT
Sbjct: 164 FCQVSANGCSRFVMIGAVSVGVVLLLMGVDEHKALALGPEGPLMEEFWDNVRRYALYFLT 223

Query: 131 VSTGAIYTILLPILELLKNPITAVLVVAIFGGAIFIISQVLSAMVGVTEFSYDYSY 177
           VSTGA+YT+ +PILELLKNPI+A+LV+ IFGG++FI+SQV+SAMVGVTEFSYDYSY
Sbjct: 224 VSTGAVYTVFVPILELLKNPISAILVLVIFGGSLFIVSQVISAMVGVTEFSYDYSY 279

[Close]

BLAST of Lsi01G004910 vs. NCBI nr
Match: gi|359495622|ref|XP_002268164.2| (PREDICTED: uncharacterized protein LOC100254484 [Vitis vinifera])

HSP 1 Score: 180.3 bits (456), Expect = 3.0e-42
Identity = 103/176 (58.52%), Postives = 129/176 (73.30%), Query Frame = 1


Query: 11  PTFKPPLISSPLFQI--KAISPLRTPFRPLASSAPPQSPA-KPL-------KIPHPSDFK 70
           PT  P   ++PLF I  K  S L  P +P + S P +    KPL       +   PS  +
Sbjct: 15  PTNLPTPTANPLFLIPFKPRSSLNHPAKPSSVSLPSRGHINKPLVSSGLTPRSQKPSKEE 74

Query: 71  IIEATPSGNSRFLIIGAVSVGVALFLLGCDGERALALGPEGPLVEEFWDNVRRYAIYALT 130
             + + +G SRF++IGAVSVGV L L+G D  +ALALGPEGPL+EEFWDNVRRYA+Y LT
Sbjct: 75  FCQVSANGCSRFVMIGAVSVGVVLLLMGVDEHKALALGPEGPLMEEFWDNVRRYALYFLT 134

Query: 131 VSTGAIYTILLPILELLKNPITAVLVVAIFGGAIFIISQVLSAMVGVTEFSYDYSY 177
           VSTGA+YT+ +PILELLKNPI+A+LV+ IFGG++FI+SQV+SAMVGVTEFSYDYSY
Sbjct: 135 VSTGAVYTVFVPILELLKNPISAILVLVIFGGSLFIVSQVISAMVGVTEFSYDYSY 190

[Close]

BLAST of Lsi01G004910 vs. NCBI nr
Match: gi|731439970|ref|XP_003635589.2| (PREDICTED: uncharacterized protein LOC100854249 [Vitis vinifera])

HSP 1 Score: 177.2 bits (448), Expect = 2.6e-41
Identity = 101/176 (57.39%), Postives = 128/176 (72.73%), Query Frame = 1


Query: 11  PTFKPPLISSPLFQI--KAISPLRTPFRPLASSAPPQSPA-KPL-------KIPHPSDFK 70
           PT  P   ++PLF I  K    L  P +P + S P +    KPL       +   PS  +
Sbjct: 92  PTNLPTPTANPLFLIPFKPRPSLNHPAKPSSVSLPSRGHINKPLVSSGLTPRSQKPSKEE 151

Query: 71  IIEATPSGNSRFLIIGAVSVGVALFLLGCDGERALALGPEGPLVEEFWDNVRRYAIYALT 130
             + + +G SRF++IGAVSVGV L L+G D  +ALALGPEGPL+EEFWDNVRRYA+Y LT
Sbjct: 152 FCQVSANGCSRFVMIGAVSVGVVLLLMGVDEHKALALGPEGPLMEEFWDNVRRYALYFLT 211

Query: 131 VSTGAIYTILLPILELLKNPITAVLVVAIFGGAIFIISQVLSAMVGVTEFSYDYSY 177
           VSTGA+YT+ +PILELLKNPI+A+LV+ IFGG+++I+SQV+SAMVGVTEFSYDYSY
Sbjct: 212 VSTGAVYTVFVPILELLKNPISAILVLVIFGGSLYIVSQVISAMVGVTEFSYDYSY 267

The following BLAST results are available for this feature:

BLAST of Lsi01G004910 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi01G004910 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KHP7_CUCSA	1.0e-81	91.48	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511100 PE=4 SV=1	[more]
D7T5G1_VITVI	2.1e-42	58.52	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0194g00160 PE=4 SV=...	[more]
D7TZ28_VITVI	1.8e-41	57.39	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s1543g00010 PE=4 SV=...	[more]
A5ADD6_VITVI	2.3e-41	58.14	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_023242 PE=4 SV=1	[more]
A0A061GIF1_THECC	6.3e-39	68.38	Uncharacterized protein OS=Theobroma cacao GN=TCM_030411 PE=4 SV=1	[more]

BLAST of Lsi01G004910 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G16410.1	4.2e-34	63.55	unknown protein	[more]

BLAST of Lsi01G004910 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449434036\|ref\|XP_004134802.1\|	1.5e-81	91.48	PREDICTED: uncharacterized protein LOC101208124 [Cucumis sativus]	[more]
gi\|659079116\|ref\|XP_008440084.1\|	3.4e-78	89.20	PREDICTED: uncharacterized protein LOC103484667 [Cucumis melo]	[more]
gi\|297736708\|emb\|CBI25744.3\|	3.0e-42	58.52	unnamed protein product [Vitis vinifera]	[more]
gi\|359495622\|ref\|XP_002268164.2\|	3.0e-42	58.52	PREDICTED: uncharacterized protein LOC100254484 [Vitis vinifera]	[more]
gi\|731439970\|ref\|XP_003635589.2\|	2.6e-41	57.39	PREDICTED: uncharacterized protein LOC100854249 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008470	Uncharacterised_Ycf33

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G004910.1	Lsi01G004910.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008470	Uncharacterised protein family Ycf33	PFAM	PF05421	DUF751	coord: 107..166 score: 6.9
None	No IPR available	PANTHER	PTHR36049	FAMILY NOT NAMED	coord: 68..176 score: 5.6
None	No IPR available	PANTHER	PTHR36049:SF3	SUBFAMILY NOT NAMED	coord: 68..176 score: 5.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi01G004910	Csa6G511100	Cucumber (Chinese Long) v2	culsiB434
Lsi01G004910	Cucsa.044670	Cucumber (Gy14) v1	cgylsiB022
Lsi01G004910	CmaCh03G005830	Cucurbita maxima (Rimu)	cmalsiB597
Lsi01G004910	CmaCh07G003560	Cucurbita maxima (Rimu)	cmalsiB786
Lsi01G004910	CmoCh03G006090	Cucurbita moschata (Rifu)	cmolsiB582
Lsi01G004910	CmoCh07G003470	Cucurbita moschata (Rifu)	cmolsiB774
Lsi01G004910	Cla014394	Watermelon (97103) v1	lsiwmB144
Lsi01G004910	MELO3C007446	Melon (DHL92) v3.5.1	lsimeB149
Lsi01G004910	ClCG01G021340	Watermelon (Charleston Gray)	lsiwcgB127
Lsi01G004910	MELO3C007446.2	Melon (DHL92) v3.6.1	lsimedB156
Lsi01G004910	Cla97C01G020920	Watermelon (97103) v2	lsiwmbB115
Lsi01G004910	Bhi03G000512	Wax gourd	lsiwgoB168
Lsi01G004910	Cp4.1LG19g08020	Cucurbita pepo (Zucchini)	cpelsiB396
Lsi01G004910	Cp4.1LG10g09910	Cucurbita pepo (Zucchini)	cpelsiB054
Lsi01G004910	Carg07882	Silver-seed gourd	carlsiB585
Lsi01G004910	Carg00504	Silver-seed gourd	carlsiB364
Lsi01G004910	CsaV3_6G048350	Cucumber (Chinese Long) v3	cuclsiB462

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi01G004910	Bottle gourd (USVL1VR-Ls)	lsilsiB064
Lsi01G004910	Cucurbita maxima (Rimu)	cmalsiB367
Lsi01G004910	Cucurbita maxima (Rimu)	cmalsiB517
Lsi01G004910	Cucurbita moschata (Rifu)	cmolsiB502
Lsi01G004910	Cucurbita pepo (Zucchini)	cpelsiB413
Lsi01G004910	Wild cucumber (PI 183967)	cpilsiB019
Lsi01G004910	Wild cucumber (PI 183967)	cpilsiB439
Lsi01G004910	Cucumber (Chinese Long) v2	culsiB020
Lsi01G004910	Melon (DHL92) v3.5.1	lsimeB129
Lsi01G004910	Cucumber (Gy14) v2	cgyblsiB014
Lsi01G004910	Cucumber (Gy14) v2	cgyblsiB016
Lsi01G004910	Cucumber (Gy14) v2	cgyblsiB398
Lsi01G004910	Cucumber (Chinese Long) v3	cuclsiB017
Lsi01G004910	Watermelon (97103) v2	lsiwmbB112