Cucsa.044670 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.044670
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Peroxiredoxin Q, chloroplastic
Location	scaffold00542 : 901394 .. 901734 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CAACCCCAAGTGGGAAATCGAGGTTCCTGATCATTGGAGCCGTCTCGGTGGGCGTTGCCCTGTTTCTGATCGGTTGCGACGGCGAAAGGGCTTTGGCTTTGGGTCCTGAAGGCCCTTTGGTGGAGGAATTTTGGGACAATGTTAGAAGATATGCACTTTACGCCCTTACTGTGAGTACTGGTGCTATTTATACTATTCTTCTCCCTATTTTGGAACTGCTGAAGAACCCCATTACTGCTGTTCTTGTTTTGGTTATTTTTGGGGGTGCCATTTTCATTATCTCTCAAGTTCTTTCTGCTATGGTTGGTGTCACTGAGTTTTCTTACGATTATACTTATTGA

mRNA sequence

CAACCCCAAGTGGGAAATCGAGGTTCCTGATCATTGGAGCCGTCTCGGTGGGCGTTGCCCTGTTTCTGATCGGTTGCGACGGCGAAAGGGCTTTGGCTTTGGGTCCTGAAGGCCCTTTGGTGGAGGAATTTTGGGACAATGTTAGAAGATATGCACTTTACGCCCTTACTGTGAGTACTGGTGCTATTTATACTATTCTTCTCCCTATTTTGGAACTGCTGAAGAACCCCATTACTGCTGTTCTTGTTTTGGTTATTTTTGGGGGTGCCATTTTCATTATCTCTCAAGTTCTTTCTGCTATGGTTGGTGTCACTGAGTTTTCTTACGATTATACTTATTGA

Coding sequence (CDS)

CAACCCCAAGTGGGAAATCGAGGTTCCTGATCATTGGAGCCGTCTCGGTGGGCGTTGCCCTGTTTCTGATCGGTTGCGACGGCGAAAGGGCTTTGGCTTTGGGTCCTGAAGGCCCTTTGGTGGAGGAATTTTGGGACAATGTTAGAAGATATGCACTTTACGCCCTTACTGTGAGTACTGGTGCTATTTATACTATTCTTCTCCCTATTTTGGAACTGCTGAAGAACCCCATTACTGCTGTTCTTGTTTTGGTTATTTTTGGGGGTGCCATTTTCATTATCTCTCAAGTTCTTTCTGCTATGGTTGGTGTCACTGAGTTTTCTTACGATTATACTTATTGA

Protein sequence

TPSGKSRFLIIGAVSVGVALFLIGCDGERALALGPEGPLVEEFWDNVRRYALYALTVSTGAIYTILLPILELLKNPITAVLVLVIFGGAIFIISQVLSAMVGVTEFSYDYTY*

Homology

[Close]

BLAST of Cucsa.044670 vs. TrEMBL
Match: A0A0A0KHP7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511100 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 2.0e-54
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 1


Query: 1   TPSGKSRFLIIGAVSVGVALFLIGCDGERALALGPEGPLVEEFWDNVRRYALYALTVSTG 60
           TPSGKSRFLIIGAVSVGVALFLIGCDGERALALGPEGPLVEEFWDNVRRYALYALTVSTG
Sbjct: 65  TPSGKSRFLIIGAVSVGVALFLIGCDGERALALGPEGPLVEEFWDNVRRYALYALTVSTG 124

Query: 61  AIYTILLPILELLKNPITAVLVLVIFGGAIFIISQVLSAMVGVTEFSYDYTY 113
           AIYTILLPILELLKNPITAVLVLVIFGGAIFIISQVLSAMVGVTEFSYDYTY
Sbjct: 125 AIYTILLPILELLKNPITAVLVLVIFGGAIFIISQVLSAMVGVTEFSYDYTY 176

[Close]

BLAST of Cucsa.044670 vs. TrEMBL
Match: D7T5G1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0194g00160 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 1.8e-42
Identity = 86/110 (78.18%), Postives = 102/110 (92.73%), Query Frame = 1


Query: 3   SGKSRFLIIGAVSVGVALFLIGCDGERALALGPEGPLVEEFWDNVRRYALYALTVSTGAI 62
           +G SRF++IGAVSVGV L L+G D  +ALALGPEGPL+EEFWDNVRRYALY LTVSTGA+
Sbjct: 170 NGCSRFVMIGAVSVGVVLLLMGVDEHKALALGPEGPLMEEFWDNVRRYALYFLTVSTGAV 229

Query: 63  YTILLPILELLKNPITAVLVLVIFGGAIFIISQVLSAMVGVTEFSYDYTY 113
           YT+ +PILELLKNPI+A+LVLVIFGG++FI+SQV+SAMVGVTEFSYDY+Y
Sbjct: 230 YTVFVPILELLKNPISAILVLVIFGGSLFIVSQVISAMVGVTEFSYDYSY 279

[Close]

BLAST of Cucsa.044670 vs. TrEMBL
Match: D7TZ28_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s1543g00010 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 3.9e-42
Identity = 85/110 (77.27%), Postives = 102/110 (92.73%), Query Frame = 1


Query: 3   SGKSRFLIIGAVSVGVALFLIGCDGERALALGPEGPLVEEFWDNVRRYALYALTVSTGAI 62
           +G SRF++IGAVSVGV L L+G D  +ALALGPEGPL+EEFWDNVRRYALY LTVSTGA+
Sbjct: 170 NGCSRFVMIGAVSVGVVLLLMGVDEHKALALGPEGPLMEEFWDNVRRYALYFLTVSTGAV 229

Query: 63  YTILLPILELLKNPITAVLVLVIFGGAIFIISQVLSAMVGVTEFSYDYTY 113
           YT+ +PILELLKNPI+A+LVLVIFGG+++I+SQV+SAMVGVTEFSYDY+Y
Sbjct: 230 YTVFVPILELLKNPISAILVLVIFGGSLYIVSQVISAMVGVTEFSYDYSY 279

[Close]

BLAST of Cucsa.044670 vs. TrEMBL
Match: A5ADD6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_023242 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 3.9e-42
Identity = 85/110 (77.27%), Postives = 102/110 (92.73%), Query Frame = 1


Query: 3   SGKSRFLIIGAVSVGVALFLIGCDGERALALGPEGPLVEEFWDNVRRYALYALTVSTGAI 62
           +G SRF++IGAVSVGV L L+G D  +ALALGPEGPL+EEFWDNVRRYALY LTVSTGA+
Sbjct: 157 NGCSRFVMIGAVSVGVVLLLMGVDEHKALALGPEGPLMEEFWDNVRRYALYFLTVSTGAV 216

Query: 63  YTILLPILELLKNPITAVLVLVIFGGAIFIISQVLSAMVGVTEFSYDYTY 113
           YT+ +PILELLKNPI+A+LVLVIFGG+++I+SQV+SAMVGVTEFSYDY+Y
Sbjct: 217 YTVFVPILELLKNPISAILVLVIFGGSLYIVSQVISAMVGVTEFSYDYSY 266

[Close]

BLAST of Cucsa.044670 vs. TrEMBL
Match: A0A061GIF1_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_030411 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 2.5e-41
Identity = 83/109 (76.15%), Postives = 99/109 (90.83%), Query Frame = 1


Query: 4   GKSRFLIIGAVSVGVALFLIGCDGERALALGPEGPLVEEFWDNVRRYALYALTVSTGAIY 63
           G SRF+I+GAVS+G+AL L+G D ++ALA GPEGPL+EEFWDNVRRYALYALTVSTGAIY
Sbjct: 86  GYSRFVIVGAVSIGLALLLMGADDQKALAFGPEGPLMEEFWDNVRRYALYALTVSTGAIY 145

Query: 64  TILLPILELLKNPITAVLVLVIFGGAIFIISQVLSAMVGVTEFSYDYTY 113
           TI  PILELLKNPI+A+L+LVI GG+I+I+SQ+LSAMVGVT+FSY Y Y
Sbjct: 146 TIFQPILELLKNPISAILILVIIGGSIYIVSQILSAMVGVTDFSYSYAY 194

[Close]

BLAST of Cucsa.044670 vs. TAIR10
Match: AT4G16410.1 (AT4G16410.1 unknown protein)

HSP 1 Score: 149.1 bits (375), Expect = 1.7e-36
Identity = 68/107 (63.55%), Postives = 90/107 (84.11%), Query Frame = 1


Query: 7   RFLIIGAVSVGVALFLI-GCDGERALALGPEGPLVEEFWDNVRRYALYALTVSTGAIYTI 66
           R+ ++G VSVG+ + L+ G D E+A+ALGPEGPL+EEFWDNVRRY LYALTVSTGA+  +
Sbjct: 79  RYAVVGGVSVGLMMVLVLGMDAEKAMALGPEGPLMEEFWDNVRRYGLYALTVSTGALSAV 138

Query: 67  LLPILELLKNPITAVLVLVIFGGAIFIISQVLSAMVGVTEFSYDYTY 113
             PI ELLKNPI+A+L+L+I GG+ +I+SQV+SAM+GV EF+Y Y+Y
Sbjct: 139 FEPIFELLKNPISAILILLILGGSFYIVSQVVSAMIGVNEFAYQYSY 185

[Close]

BLAST of Cucsa.044670 vs. NCBI nr
Match: gi|449434036|ref|XP_004134802.1| (PREDICTED: uncharacterized protein LOC101208124 [Cucumis sativus])

HSP 1 Score: 219.5 bits (558), Expect = 2.9e-54
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 1


Query: 1   TPSGKSRFLIIGAVSVGVALFLIGCDGERALALGPEGPLVEEFWDNVRRYALYALTVSTG 60
           TPSGKSRFLIIGAVSVGVALFLIGCDGERALALGPEGPLVEEFWDNVRRYALYALTVSTG
Sbjct: 65  TPSGKSRFLIIGAVSVGVALFLIGCDGERALALGPEGPLVEEFWDNVRRYALYALTVSTG 124

Query: 61  AIYTILLPILELLKNPITAVLVLVIFGGAIFIISQVLSAMVGVTEFSYDYTY 113
           AIYTILLPILELLKNPITAVLVLVIFGGAIFIISQVLSAMVGVTEFSYDYTY
Sbjct: 125 AIYTILLPILELLKNPITAVLVLVIFGGAIFIISQVLSAMVGVTEFSYDYTY 176

[Close]

BLAST of Cucsa.044670 vs. NCBI nr
Match: gi|659079116|ref|XP_008440084.1| (PREDICTED: uncharacterized protein LOC103484667 [Cucumis melo])

HSP 1 Score: 214.9 bits (546), Expect = 7.1e-53
Identity = 109/112 (97.32%), Postives = 111/112 (99.11%), Query Frame = 1


Query: 1   TPSGKSRFLIIGAVSVGVALFLIGCDGERALALGPEGPLVEEFWDNVRRYALYALTVSTG 60
           TPSGKSRFLIIGAVSVGVALFLIGCD ERALALGPEGPLVEEFWDNVRRYA+YALTVSTG
Sbjct: 65  TPSGKSRFLIIGAVSVGVALFLIGCDSERALALGPEGPLVEEFWDNVRRYAIYALTVSTG 124

Query: 61  AIYTILLPILELLKNPITAVLVLVIFGGAIFIISQVLSAMVGVTEFSYDYTY 113
           AIYTILLPILELLKNPITAVLVLVIFGGAIFIISQVLSAMVGVTEFSYDY+Y
Sbjct: 125 AIYTILLPILELLKNPITAVLVLVIFGGAIFIISQVLSAMVGVTEFSYDYSY 176

[Close]

BLAST of Cucsa.044670 vs. NCBI nr
Match: gi|297736708|emb|CBI25744.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 179.9 bits (455), Expect = 2.5e-42
Identity = 86/110 (78.18%), Postives = 102/110 (92.73%), Query Frame = 1


Query: 3   SGKSRFLIIGAVSVGVALFLIGCDGERALALGPEGPLVEEFWDNVRRYALYALTVSTGAI 62
           +G SRF++IGAVSVGV L L+G D  +ALALGPEGPL+EEFWDNVRRYALY LTVSTGA+
Sbjct: 170 NGCSRFVMIGAVSVGVVLLLMGVDEHKALALGPEGPLMEEFWDNVRRYALYFLTVSTGAV 229

Query: 63  YTILLPILELLKNPITAVLVLVIFGGAIFIISQVLSAMVGVTEFSYDYTY 113
           YT+ +PILELLKNPI+A+LVLVIFGG++FI+SQV+SAMVGVTEFSYDY+Y
Sbjct: 230 YTVFVPILELLKNPISAILVLVIFGGSLFIVSQVISAMVGVTEFSYDYSY 279

[Close]

BLAST of Cucsa.044670 vs. NCBI nr
Match: gi|359495622|ref|XP_002268164.2| (PREDICTED: uncharacterized protein LOC100254484 [Vitis vinifera])

HSP 1 Score: 179.9 bits (455), Expect = 2.5e-42
Identity = 86/110 (78.18%), Postives = 102/110 (92.73%), Query Frame = 1


Query: 3   SGKSRFLIIGAVSVGVALFLIGCDGERALALGPEGPLVEEFWDNVRRYALYALTVSTGAI 62
           +G SRF++IGAVSVGV L L+G D  +ALALGPEGPL+EEFWDNVRRYALY LTVSTGA+
Sbjct: 81  NGCSRFVMIGAVSVGVVLLLMGVDEHKALALGPEGPLMEEFWDNVRRYALYFLTVSTGAV 140

Query: 63  YTILLPILELLKNPITAVLVLVIFGGAIFIISQVLSAMVGVTEFSYDYTY 113
           YT+ +PILELLKNPI+A+LVLVIFGG++FI+SQV+SAMVGVTEFSYDY+Y
Sbjct: 141 YTVFVPILELLKNPISAILVLVIFGGSLFIVSQVISAMVGVTEFSYDYSY 190

[Close]

BLAST of Cucsa.044670 vs. NCBI nr
Match: gi|147787390|emb|CAN73304.1| (hypothetical protein VITISV_023242 [Vitis vinifera])

HSP 1 Score: 178.7 bits (452), Expect = 5.6e-42
Identity = 85/110 (77.27%), Postives = 102/110 (92.73%), Query Frame = 1


Query: 3   SGKSRFLIIGAVSVGVALFLIGCDGERALALGPEGPLVEEFWDNVRRYALYALTVSTGAI 62
           +G SRF++IGAVSVGV L L+G D  +ALALGPEGPL+EEFWDNVRRYALY LTVSTGA+
Sbjct: 157 NGCSRFVMIGAVSVGVVLLLMGVDEHKALALGPEGPLMEEFWDNVRRYALYFLTVSTGAV 216

Query: 63  YTILLPILELLKNPITAVLVLVIFGGAIFIISQVLSAMVGVTEFSYDYTY 113
           YT+ +PILELLKNPI+A+LVLVIFGG+++I+SQV+SAMVGVTEFSYDY+Y
Sbjct: 217 YTVFVPILELLKNPISAILVLVIFGGSLYIVSQVISAMVGVTEFSYDYSY 266

The following BLAST results are available for this feature:

BLAST of Cucsa.044670 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KHP7_CUCSA	2.0e-54	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511100 PE=4 SV=1	[more]
D7T5G1_VITVI	1.8e-42	78.18	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0194g00160 PE=4 SV=...	[more]
D7TZ28_VITVI	3.9e-42	77.27	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s1543g00010 PE=4 SV=...	[more]
A5ADD6_VITVI	3.9e-42	77.27	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_023242 PE=4 SV=1	[more]
A0A061GIF1_THECC	2.5e-41	76.15	Uncharacterized protein OS=Theobroma cacao GN=TCM_030411 PE=4 SV=1	[more]

BLAST of Cucsa.044670 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G16410.1	1.7e-36	63.55	unknown protein	[more]

BLAST of Cucsa.044670 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449434036\|ref\|XP_004134802.1\|	2.9e-54	100.00	PREDICTED: uncharacterized protein LOC101208124 [Cucumis sativus]	[more]
gi\|659079116\|ref\|XP_008440084.1\|	7.1e-53	97.32	PREDICTED: uncharacterized protein LOC103484667 [Cucumis melo]	[more]
gi\|297736708\|emb\|CBI25744.3\|	2.5e-42	78.18	unnamed protein product [Vitis vinifera]	[more]
gi\|359495622\|ref\|XP_002268164.2\|	2.5e-42	78.18	PREDICTED: uncharacterized protein LOC100254484 [Vitis vinifera]	[more]
gi\|147787390\|emb\|CAN73304.1\|	5.6e-42	77.27	hypothetical protein VITISV_023242 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008470	Uncharacterised_Ycf33

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.044670.1	Cucsa.044670.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008470	Uncharacterised protein family Ycf33	PFAM	PF05421	DUF751	coord: 43..102 score: 1.5
None	No IPR available	PANTHER	PTHR36049	FAMILY NOT NAMED	coord: 4..112 score: 1.1
None	No IPR available	PANTHER	PTHR36049:SF3	SUBFAMILY NOT NAMED	coord: 4..112 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.044670	Cla014394	Watermelon (97103) v1	cgywmB026
Cucsa.044670	Csa6G511100	Cucumber (Chinese Long) v2	cgycuB027
Cucsa.044670	MELO3C007446	Melon (DHL92) v3.5.1	cgymeB027
Cucsa.044670	ClCG01G021340	Watermelon (Charleston Gray)	cgywcgB022
Cucsa.044670	CmaCh03G005830	Cucurbita maxima (Rimu)	cgycmaB0047
Cucsa.044670	CmoCh07G003470	Cucurbita moschata (Rifu)	cgycmoB0043
Cucsa.044670	CmoCh03G006090	Cucurbita moschata (Rifu)	cgycmoB0042
Cucsa.044670	Lsi01G004910	Bottle gourd (USVL1VR-Ls)	cgylsiB022
Cucsa.044670	Cp4.1LG10g09910	Cucurbita pepo (Zucchini)	cgycpeB0033
Cucsa.044670	Cp4.1LG19g08020	Cucurbita pepo (Zucchini)	cgycpeB0039
Cucsa.044670	MELO3C007446.2	Melon (DHL92) v3.6.1	cgymedB025
Cucsa.044670	CsaV3_6G048350	Cucumber (Chinese Long) v3	cgycucB028
Cucsa.044670	Cla97C01G020920	Watermelon (97103) v2	cgywmbB017
Cucsa.044670	Bhi03G000512	Wax gourd	cgywgoB026
Cucsa.044670	Carg00504	Silver-seed gourd	carcgyB0466
Cucsa.044670	Carg07882	Silver-seed gourd	carcgyB0714

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.044670	Cucurbita pepo (Zucchini)	cgycpeB0041
Cucsa.044670	Bottle gourd (USVL1VR-Ls)	cgylsiB024
Cucsa.044670	Watermelon (97103) v2	cgywmbB018
Cucsa.044670	Cucurbita maxima (Rimu)	cgycmaB0048
Cucsa.044670	Cucurbita maxima (Rimu)	cgycmaB0040
Cucsa.044670	Wild cucumber (PI 183967)	cgycpiB017
Cucsa.044670	Wild cucumber (PI 183967)	cgycpiB028
Cucsa.044670	Cucumber (Chinese Long) v2	cgycuB016
Cucsa.044670	Melon (DHL92) v3.5.1	cgymeB018