CmoCh07G003470 (gene) Cucurbita moschata (Rifu)

NameCmoCh07G003470
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionPeroxiredoxin Q, chloroplastic
LocationCmo_Chr07 : 1618406 .. 1618948 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCACCTCTCTCAGAACTCGAATCCACTTCTCAATCTTCCCCACTTCAAAAAACCCACCAATTTCTCCCCCTTTAATTCCGATCAACGTCCCGACCCCTCTTAGAAGCCCTTTCCGGCCACTTGCATCCTCTTCGCCGCCGAAATCTCCGGCCAAATCCCCGAAGAATACTTGGCCATCAGATCTCAAGGCAATCGAAGCACACCCAATCGAGAGCTCGAGGTTTCTGATCATCGGAGCCGTTTCAGTGGGCGTTGCCCTGTTTCTGATGGGTTCCGACGGGGAAAGGGCTTTGGCTTTGGGCCCTGAAGGGCCTTTGGTGGAGGAATTTTGGGACAATGTTAGAAGATACGCGATTTACGCGGTTACTGTGAGTAGTGGTGCTCTTTACACTATCCTTCTCCCCATTTTGGAGCTGCTGAAGAACCCCATTACTGCTGTTCTTGTTTTAGCTATTTTTGGGGGTACCATTTTCATTATCTCTCAAGTGCTTTCTGCTATGGTTGGTGTCAATGAGTTTTCTTATGAATATGCCTATTGA

mRNA sequence

ATGGCCACCTCTCTCAGAACTCGAATCCACTTCTCAATCTTCCCCACTTCAAAAAACCCACCAATTTCTCCCCCTTTAATTCCGATCAACGTCCCGACCCCTCTTAGAAGCCCTTTCCGGCCACTTGCATCCTCTTCGCCGCCGAAATCTCCGGCCAAATCCCCGAAGAATACTTGGCCATCAGATCTCAAGGCAATCGAAGCACACCCAATCGAGAGCTCGAGGTTTCTGATCATCGGAGCCGTTTCAGTGGGCGTTGCCCTGTTTCTGATGGGTTCCGACGGGGAAAGGGCTTTGGCTTTGGGCCCTGAAGGGCCTTTGGTGGAGGAATTTTGGGACAATGTTAGAAGATACGCGATTTACGCGGTTACTGTGAGTAGTGGTGCTCTTTACACTATCCTTCTCCCCATTTTGGAGCTGCTGAAGAACCCCATTACTGCTGTTCTTGTTTTAGCTATTTTTGGGGGTACCATTTTCATTATCTCTCAAGTGCTTTCTGCTATGGTTGGTGTCAATGAGTTTTCTTATGAATATGCCTATTGA

Coding sequence (CDS)

ATGGCCACCTCTCTCAGAACTCGAATCCACTTCTCAATCTTCCCCACTTCAAAAAACCCACCAATTTCTCCCCCTTTAATTCCGATCAACGTCCCGACCCCTCTTAGAAGCCCTTTCCGGCCACTTGCATCCTCTTCGCCGCCGAAATCTCCGGCCAAATCCCCGAAGAATACTTGGCCATCAGATCTCAAGGCAATCGAAGCACACCCAATCGAGAGCTCGAGGTTTCTGATCATCGGAGCCGTTTCAGTGGGCGTTGCCCTGTTTCTGATGGGTTCCGACGGGGAAAGGGCTTTGGCTTTGGGCCCTGAAGGGCCTTTGGTGGAGGAATTTTGGGACAATGTTAGAAGATACGCGATTTACGCGGTTACTGTGAGTAGTGGTGCTCTTTACACTATCCTTCTCCCCATTTTGGAGCTGCTGAAGAACCCCATTACTGCTGTTCTTGTTTTAGCTATTTTTGGGGGTACCATTTTCATTATCTCTCAAGTGCTTTCTGCTATGGTTGGTGTCAATGAGTTTTCTTATGAATATGCCTATTGA
BLAST of CmoCh07G003470 vs. TrEMBL
Match: A0A0A0KHP7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511100 PE=4 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 1.0e-60
Identity = 135/180 (75.00%), Postives = 147/180 (81.67%), Query Frame = 1

Query: 1   MATSLRTRIHFSIFPTSKNPPISPPLIPINVPTPLRSPFRPLASSSPPKSPAKSPKNTWP 60
           MATS  T      FPT K P IS P  PI   +P+R+PFRPLASS+PP+SPAK  K   P
Sbjct: 1   MATSFVT----PFFPTFKTPLISLPSFPIKPISPIRTPFRPLASSAPPQSPAKPLKIPHP 60

Query: 61  SDLKAIEAHPIESSRFLIIGAVSVGVALFLMGSDGERALALGPEGPLVEEFWDNVRRYAI 120
           +D K IEA P   SRFLIIGAVSVGVALFL+G DGERALALGPEGPLVEEFWDNVRRYA+
Sbjct: 61  TDFKTIEATPSGKSRFLIIGAVSVGVALFLIGCDGERALALGPEGPLVEEFWDNVRRYAL 120

Query: 121 YAVTVSSGALYTILLPILELLKNPITAVLVLAIFGGTIFIISQVLSAMVGVNEFSYEYAY 180
           YA+TVS+GA+YTILLPILELLKNPITAVLVL IFGG IFIISQVLSAMVGV EFSY+Y Y
Sbjct: 121 YALTVSTGAIYTILLPILELLKNPITAVLVLVIFGGAIFIISQVLSAMVGVTEFSYDYTY 176

BLAST of CmoCh07G003470 vs. TrEMBL
Match: D7T5G1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0194g00160 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 8.5e-39
Identity = 99/189 (52.38%), Postives = 132/189 (69.84%), Query Frame = 1

Query: 2   ATSLRTRIHFSIFPTSKNPPISPPL--IPINVPTPLRSPFRPLASSSPPK--------SP 61
           A++L+ + H    PT+   P + PL  IP    + L  P +P + S P +        S 
Sbjct: 92  ASALKFQSHIPS-PTNLPTPTANPLFLIPFKPRSSLNHPAKPSSVSLPSRGHINKPLVSS 151

Query: 62  AKSPKNTWPSDLKAIEAHPIESSRFLIIGAVSVGVALFLMGSDGERALALGPEGPLVEEF 121
             +P++  PS  +  +      SRF++IGAVSVGV L LMG D  +ALALGPEGPL+EEF
Sbjct: 152 GLTPRSQKPSKEEFCQVSANGCSRFVMIGAVSVGVVLLLMGVDEHKALALGPEGPLMEEF 211

Query: 122 WDNVRRYAIYAVTVSSGALYTILLPILELLKNPITAVLVLAIFGGTIFIISQVLSAMVGV 181
           WDNVRRYA+Y +TVS+GA+YT+ +PILELLKNPI+A+LVL IFGG++FI+SQV+SAMVGV
Sbjct: 212 WDNVRRYALYFLTVSTGAVYTVFVPILELLKNPISAILVLVIFGGSLFIVSQVISAMVGV 271

BLAST of CmoCh07G003470 vs. TrEMBL
Match: D7TZ28_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s1543g00010 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 3.2e-38
Identity = 98/189 (51.85%), Postives = 131/189 (69.31%), Query Frame = 1

Query: 2   ATSLRTRIHFSIFPTSKNPPISPPL--IPINVPTPLRSPFRPLASSSPPK--------SP 61
           A++L+ + H    PT+   P + PL  IP      L  P +P + S P +        S 
Sbjct: 92  ASALKFQSHIPS-PTNLPTPTANPLFLIPFKPRPSLNHPAKPSSVSLPSRGHINKPLVSS 151

Query: 62  AKSPKNTWPSDLKAIEAHPIESSRFLIIGAVSVGVALFLMGSDGERALALGPEGPLVEEF 121
             +P++  PS  +  +      SRF++IGAVSVGV L LMG D  +ALALGPEGPL+EEF
Sbjct: 152 GLTPRSQKPSKEEFCQVSANGCSRFVMIGAVSVGVVLLLMGVDEHKALALGPEGPLMEEF 211

Query: 122 WDNVRRYAIYAVTVSSGALYTILLPILELLKNPITAVLVLAIFGGTIFIISQVLSAMVGV 181
           WDNVRRYA+Y +TVS+GA+YT+ +PILELLKNPI+A+LVL IFGG+++I+SQV+SAMVGV
Sbjct: 212 WDNVRRYALYFLTVSTGAVYTVFVPILELLKNPISAILVLVIFGGSLYIVSQVISAMVGV 271

BLAST of CmoCh07G003470 vs. TrEMBL
Match: A5ADD6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_023242 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 4.2e-38
Identity = 96/188 (51.06%), Postives = 129/188 (68.62%), Query Frame = 1

Query: 2   ATSLRTRIHFSIFPTSKNPPISPP-LIPINVPTPLRSPFRPLASSSPPK--------SPA 61
           A++L+ + H         P  +P  LIP    + L  P +P + S P +        S  
Sbjct: 79  ASALKFQSHIPSSTNLPTPTANPLFLIPFKPRSSLNHPAKPSSVSLPSRGHINKPLVSSG 138

Query: 62  KSPKNTWPSDLKAIEAHPIESSRFLIIGAVSVGVALFLMGSDGERALALGPEGPLVEEFW 121
            +P++  PS  +  +      SRF++IGAVSVGV L LMG D  +ALALGPEGPL+EEFW
Sbjct: 139 LTPRSQKPSKEEFCQVSANGCSRFVMIGAVSVGVVLLLMGVDEHKALALGPEGPLMEEFW 198

Query: 122 DNVRRYAIYAVTVSSGALYTILLPILELLKNPITAVLVLAIFGGTIFIISQVLSAMVGVN 181
           DNVRRYA+Y +TVS+GA+YT+ +PILELLKNPI+A+LVL IFGG+++I+SQV+SAMVGV 
Sbjct: 199 DNVRRYALYFLTVSTGAVYTVFVPILELLKNPISAILVLVIFGGSLYIVSQVISAMVGVT 258

BLAST of CmoCh07G003470 vs. TrEMBL
Match: A0A061GIF1_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_030411 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 1.2e-37
Identity = 78/107 (72.90%), Postives = 98/107 (91.59%), Query Frame = 1

Query: 74  SRFLIIGAVSVGVALFLMGSDGERALALGPEGPLVEEFWDNVRRYAIYAVTVSSGALYTI 133
           SRF+I+GAVS+G+AL LMG+D ++ALA GPEGPL+EEFWDNVRRYA+YA+TVS+GA+YTI
Sbjct: 88  SRFVIVGAVSIGLALLLMGADDQKALAFGPEGPLMEEFWDNVRRYALYALTVSTGAIYTI 147

Query: 134 LLPILELLKNPITAVLVLAIFGGTIFIISQVLSAMVGVNEFSYEYAY 181
             PILELLKNPI+A+L+L I GG+I+I+SQ+LSAMVGV +FSY YAY
Sbjct: 148 FQPILELLKNPISAILILVIIGGSIYIVSQILSAMVGVTDFSYSYAY 194

BLAST of CmoCh07G003470 vs. TAIR10
Match: AT4G16410.1 (AT4G16410.1 unknown protein)

HSP 1 Score: 142.5 bits (358), Expect = 2.5e-34
Identity = 67/107 (62.62%), Postives = 91/107 (85.05%), Query Frame = 1

Query: 75  RFLIIGAVSVGVALFL-MGSDGERALALGPEGPLVEEFWDNVRRYAIYAVTVSSGALYTI 134
           R+ ++G VSVG+ + L +G D E+A+ALGPEGPL+EEFWDNVRRY +YA+TVS+GAL  +
Sbjct: 79  RYAVVGGVSVGLMMVLVLGMDAEKAMALGPEGPLMEEFWDNVRRYGLYALTVSTGALSAV 138

Query: 135 LLPILELLKNPITAVLVLAIFGGTIFIISQVLSAMVGVNEFSYEYAY 181
             PI ELLKNPI+A+L+L I GG+ +I+SQV+SAM+GVNEF+Y+Y+Y
Sbjct: 139 FEPIFELLKNPISAILILLILGGSFYIVSQVVSAMIGVNEFAYQYSY 185

BLAST of CmoCh07G003470 vs. NCBI nr
Match: gi|449434036|ref|XP_004134802.1| (PREDICTED: uncharacterized protein LOC101208124 [Cucumis sativus])

HSP 1 Score: 241.1 bits (614), Expect = 1.5e-60
Identity = 135/180 (75.00%), Postives = 147/180 (81.67%), Query Frame = 1

Query: 1   MATSLRTRIHFSIFPTSKNPPISPPLIPINVPTPLRSPFRPLASSSPPKSPAKSPKNTWP 60
           MATS  T      FPT K P IS P  PI   +P+R+PFRPLASS+PP+SPAK  K   P
Sbjct: 1   MATSFVT----PFFPTFKTPLISLPSFPIKPISPIRTPFRPLASSAPPQSPAKPLKIPHP 60

Query: 61  SDLKAIEAHPIESSRFLIIGAVSVGVALFLMGSDGERALALGPEGPLVEEFWDNVRRYAI 120
           +D K IEA P   SRFLIIGAVSVGVALFL+G DGERALALGPEGPLVEEFWDNVRRYA+
Sbjct: 61  TDFKTIEATPSGKSRFLIIGAVSVGVALFLIGCDGERALALGPEGPLVEEFWDNVRRYAL 120

Query: 121 YAVTVSSGALYTILLPILELLKNPITAVLVLAIFGGTIFIISQVLSAMVGVNEFSYEYAY 180
           YA+TVS+GA+YTILLPILELLKNPITAVLVL IFGG IFIISQVLSAMVGV EFSY+Y Y
Sbjct: 121 YALTVSTGAIYTILLPILELLKNPITAVLVLVIFGGAIFIISQVLSAMVGVTEFSYDYTY 176

BLAST of CmoCh07G003470 vs. NCBI nr
Match: gi|659079116|ref|XP_008440084.1| (PREDICTED: uncharacterized protein LOC103484667 [Cucumis melo])

HSP 1 Score: 230.7 bits (587), Expect = 2.0e-57
Identity = 131/180 (72.78%), Postives = 143/180 (79.44%), Query Frame = 1

Query: 1   MATSLRTRIHFSIFPTSKNPPISPPLIPINVPTPLRSPFRPLASSSPPKSPAKSPKNTWP 60
           MATS  T      FPT +   I  P  P+    P+R+PFRPLASS+ P+SPAK  K   P
Sbjct: 1   MATSFIT----PFFPTFRTSLIPLPSFPVKPIPPIRTPFRPLASSASPQSPAKPLKIPHP 60

Query: 61  SDLKAIEAHPIESSRFLIIGAVSVGVALFLMGSDGERALALGPEGPLVEEFWDNVRRYAI 120
           SD K IEA P   SRFLIIGAVSVGVALFL+G D ERALALGPEGPLVEEFWDNVRRYAI
Sbjct: 61  SDFKTIEATPSGKSRFLIIGAVSVGVALFLIGCDSERALALGPEGPLVEEFWDNVRRYAI 120

Query: 121 YAVTVSSGALYTILLPILELLKNPITAVLVLAIFGGTIFIISQVLSAMVGVNEFSYEYAY 180
           YA+TVS+GA+YTILLPILELLKNPITAVLVL IFGG IFIISQVLSAMVGV EFSY+Y+Y
Sbjct: 121 YALTVSTGAIYTILLPILELLKNPITAVLVLVIFGGAIFIISQVLSAMVGVTEFSYDYSY 176

BLAST of CmoCh07G003470 vs. NCBI nr
Match: gi|802681929|ref|XP_012082180.1| (PREDICTED: uncharacterized protein LOC105642100 [Jatropha curcas])

HSP 1 Score: 170.6 bits (431), Expect = 2.4e-39
Identity = 101/182 (55.49%), Postives = 130/182 (71.43%), Query Frame = 1

Query: 4   SLRTRIHFSIFPTSKNP-PISPPLIPINVPTPLRSPFRPLASSSPPKS---PAKSPKNTW 63
           +L+++ H   +    NP P SP LIPI   + L+ P  P  S+ P K    P K  K+  
Sbjct: 5   TLKSQFHLIGYTNLTNPAPKSPVLIPIKTKSNLKYPTIPSKSTVPRKLGQYPQKLTKSII 64

Query: 64  PSDLK-AIEAHPIESSRFLIIGAVSVGVALFLMGSDGERALALGPEGPLVEEFWDNVRRY 123
             D   + +  P  + RF+++GAVSVG+ LFLMG D  +ALA GPEGPLVEEFW+NVRRY
Sbjct: 65  SEDKGLSHQISPNGNFRFVVVGAVSVGLFLFLMGFDEHKALAFGPEGPLVEEFWENVRRY 124

Query: 124 AIYAVTVSSGALYTILLPILELLKNPITAVLVLAIFGGTIFIISQVLSAMVGVNEFSYEY 181
           A+YA+TVS+GALYTIL PI+ELLKNPI+AVLV+ IFGG+ +I+SQVLSAMVGV EF+Y+Y
Sbjct: 125 ALYALTVSTGALYTILQPIVELLKNPISAVLVILIFGGSFYIVSQVLSAMVGVTEFTYDY 184

BLAST of CmoCh07G003470 vs. NCBI nr
Match: gi|297736708|emb|CBI25744.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 168.3 bits (425), Expect = 1.2e-38
Identity = 99/189 (52.38%), Postives = 132/189 (69.84%), Query Frame = 1

Query: 2   ATSLRTRIHFSIFPTSKNPPISPPL--IPINVPTPLRSPFRPLASSSPPK--------SP 61
           A++L+ + H    PT+   P + PL  IP    + L  P +P + S P +        S 
Sbjct: 92  ASALKFQSHIPS-PTNLPTPTANPLFLIPFKPRSSLNHPAKPSSVSLPSRGHINKPLVSS 151

Query: 62  AKSPKNTWPSDLKAIEAHPIESSRFLIIGAVSVGVALFLMGSDGERALALGPEGPLVEEF 121
             +P++  PS  +  +      SRF++IGAVSVGV L LMG D  +ALALGPEGPL+EEF
Sbjct: 152 GLTPRSQKPSKEEFCQVSANGCSRFVMIGAVSVGVVLLLMGVDEHKALALGPEGPLMEEF 211

Query: 122 WDNVRRYAIYAVTVSSGALYTILLPILELLKNPITAVLVLAIFGGTIFIISQVLSAMVGV 181
           WDNVRRYA+Y +TVS+GA+YT+ +PILELLKNPI+A+LVL IFGG++FI+SQV+SAMVGV
Sbjct: 212 WDNVRRYALYFLTVSTGAVYTVFVPILELLKNPISAILVLVIFGGSLFIVSQVISAMVGV 271

BLAST of CmoCh07G003470 vs. NCBI nr
Match: gi|359495622|ref|XP_002268164.2| (PREDICTED: uncharacterized protein LOC100254484 [Vitis vinifera])

HSP 1 Score: 168.3 bits (425), Expect = 1.2e-38
Identity = 99/189 (52.38%), Postives = 132/189 (69.84%), Query Frame = 1

Query: 2   ATSLRTRIHFSIFPTSKNPPISPPL--IPINVPTPLRSPFRPLASSSPPK--------SP 61
           A++L+ + H    PT+   P + PL  IP    + L  P +P + S P +        S 
Sbjct: 3   ASALKFQSHIPS-PTNLPTPTANPLFLIPFKPRSSLNHPAKPSSVSLPSRGHINKPLVSS 62

Query: 62  AKSPKNTWPSDLKAIEAHPIESSRFLIIGAVSVGVALFLMGSDGERALALGPEGPLVEEF 121
             +P++  PS  +  +      SRF++IGAVSVGV L LMG D  +ALALGPEGPL+EEF
Sbjct: 63  GLTPRSQKPSKEEFCQVSANGCSRFVMIGAVSVGVVLLLMGVDEHKALALGPEGPLMEEF 122

Query: 122 WDNVRRYAIYAVTVSSGALYTILLPILELLKNPITAVLVLAIFGGTIFIISQVLSAMVGV 181
           WDNVRRYA+Y +TVS+GA+YT+ +PILELLKNPI+A+LVL IFGG++FI+SQV+SAMVGV
Sbjct: 123 WDNVRRYALYFLTVSTGAVYTVFVPILELLKNPISAILVLVIFGGSLFIVSQVISAMVGV 182

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KHP7_CUCSA1.0e-6075.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511100 PE=4 SV=1[more]
D7T5G1_VITVI8.5e-3952.38Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0194g00160 PE=4 SV=... [more]
D7TZ28_VITVI3.2e-3851.85Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s1543g00010 PE=4 SV=... [more]
A5ADD6_VITVI4.2e-3851.06Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_023242 PE=4 SV=1[more]
A0A061GIF1_THECC1.2e-3772.90Uncharacterized protein OS=Theobroma cacao GN=TCM_030411 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G16410.12.5e-3462.62 unknown protein[more]
Match NameE-valueIdentityDescription
gi|449434036|ref|XP_004134802.1|1.5e-6075.00PREDICTED: uncharacterized protein LOC101208124 [Cucumis sativus][more]
gi|659079116|ref|XP_008440084.1|2.0e-5772.78PREDICTED: uncharacterized protein LOC103484667 [Cucumis melo][more]
gi|802681929|ref|XP_012082180.1|2.4e-3955.49PREDICTED: uncharacterized protein LOC105642100 [Jatropha curcas][more]
gi|297736708|emb|CBI25744.3|1.2e-3852.38unnamed protein product [Vitis vinifera][more]
gi|359495622|ref|XP_002268164.2|1.2e-3852.38PREDICTED: uncharacterized protein LOC100254484 [Vitis vinifera][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008470Uncharacterised_Ycf33
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh07G003470.1CmoCh07G003470.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008470Uncharacterised protein family Ycf33PFAMPF05421DUF751coord: 111..170
score: 3.5
NoneNo IPR availablePANTHERPTHR36049FAMILY NOT NAMEDcoord: 72..180
score: 1.6
NoneNo IPR availablePANTHERPTHR36049:SF3SUBFAMILY NOT NAMEDcoord: 72..180
score: 1.6