Csa6G511100 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G511100
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Ycf33 protein; contains IPR008470 (Uncharacterised protein family Ycf33)
Location	Chr6 : 26346742 .. 26347593 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTACTATATTAACATACTAATCCTCCATGAATCACATTTTTGTTAATTTAATCCTCTCTTCAAAACTCTGGATAACACAGCCCTCACCTCCGACTTCATAACTACCATGGCCTGAGCTCCACCTCCATCCACAAACTCAACAACAATGGCCACTTCTTTCGTAACTCCATTCTTCCCCACTTTCAAAACGCCACTCATTTCTCTTCCTTCATTTCCAATCAAGCCCATTTCCCCTATCCGAACCCCTTTCCGGCCTCTCGCTTCCTCTGCGCCGCCGCAATCTCCCGCCAAACCCCTAAAAATCCCTCACCCGACGGATTTCAAGACAATCGAAGCAACCCCAAGTGGGAAATCGAGGTTCCTGATCATTGGAGCCGTCTCGGTGGGCGTTGCCCTGTTTCTGATCGGTTGCGACGGCGAAAGGGCTTTGGCTTTGGGTCCTGAAGGCCCTTTGGTGGAGGAATTTTGGGACAATGTTAGAAGATATGCACTTTACGCCCTTACTGTGAGTACTGGTGCTATTTATACTATTCTTCTCCCTATTTTGGAACTGCTGAAGAACCCCATTACTGCTGTTCTTGTTTTGGTTATTTTTGGGGGTGCCATTTTCATTATCTCTCAAGTTCTTTCTGCTATGGTTGGTGTCACTGAGTTTTCTTACGATTATACTTATTGACCCATCAAATGAAGTTCAATCTTGTTTTCTTGCCATTGCCTCCATACAAATTACAAGTTTAAGATTTTATCCCATTGTGTCTGCAATGCTACGTTTCTTTCTTTGATCTTAAATCTAATAATTCATGGTTGATTGAATGTAGCCGCCATACACTGAACCATATGTTAGAACGTTG

mRNA sequence

ATGGCCACTTCTTTCGTAACTCCATTCTTCCCCACTTTCAAAACGCCACTCATTTCTCTTCCTTCATTTCCAATCAAGCCCATTTCCCCTATCCGAACCCCTTTCCGGCCTCTCGCTTCCTCTGCGCCGCCGCAATCTCCCGCCAAACCCCTAAAAATCCCTCACCCGACGGATTTCAAGACAATCGAAGCAACCCCAAGTGGGAAATCGAGGTTCCTGATCATTGGAGCCGTCTCGGTGGGCGTTGCCCTGTTTCTGATCGGTTGCGACGGCGAAAGGGCTTTGGCTTTGGGTCCTGAAGGCCCTTTGGTGGAGGAATTTTGGGACAATGTTAGAAGATATGCACTTTACGCCCTTACTGTGAGTACTGGTGCTATTTATACTATTCTTCTCCCTATTTTGGAACTGCTGAAGAACCCCATTACTGCTGTTCTTGTTTTGGTTATTTTTGGGGGTGCCATTTTCATTATCTCTCAAGTTCTTTCTGCTATGGTTGGTGTCACTGAGTTTTCTTACGATTATACTTATTGA

Coding sequence (CDS)

ATGGCCACTTCTTTCGTAACTCCATTCTTCCCCACTTTCAAAACGCCACTCATTTCTCTTCCTTCATTTCCAATCAAGCCCATTTCCCCTATCCGAACCCCTTTCCGGCCTCTCGCTTCCTCTGCGCCGCCGCAATCTCCCGCCAAACCCCTAAAAATCCCTCACCCGACGGATTTCAAGACAATCGAAGCAACCCCAAGTGGGAAATCGAGGTTCCTGATCATTGGAGCCGTCTCGGTGGGCGTTGCCCTGTTTCTGATCGGTTGCGACGGCGAAAGGGCTTTGGCTTTGGGTCCTGAAGGCCCTTTGGTGGAGGAATTTTGGGACAATGTTAGAAGATATGCACTTTACGCCCTTACTGTGAGTACTGGTGCTATTTATACTATTCTTCTCCCTATTTTGGAACTGCTGAAGAACCCCATTACTGCTGTTCTTGTTTTGGTTATTTTTGGGGGTGCCATTTTCATTATCTCTCAAGTTCTTTCTGCTATGGTTGGTGTCACTGAGTTTTCTTACGATTATACTTATTGA

Protein sequence

MATSFVTPFFPTFKTPLISLPSFPIKPISPIRTPFRPLASSAPPQSPAKPLKIPHPTDFKTIEATPSGKSRFLIIGAVSVGVALFLIGCDGERALALGPEGPLVEEFWDNVRRYALYALTVSTGAIYTILLPILELLKNPITAVLVLVIFGGAIFIISQVLSAMVGVTEFSYDYTY*

Homology

[Close]

BLAST of Csa6G511100 vs. TrEMBL
Match: A0A0A0KHP7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511100 PE=4 SV=1)

HSP 1 Score: 349.7 bits (896), Expect = 2.0e-93
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 1


Query: 1   MATSFVTPFFPTFKTPLISLPSFPIKPISPIRTPFRPLASSAPPQSPAKPLKIPHPTDFK 60
           MATSFVTPFFPTFKTPLISLPSFPIKPISPIRTPFRPLASSAPPQSPAKPLKIPHPTDFK
Sbjct: 1   MATSFVTPFFPTFKTPLISLPSFPIKPISPIRTPFRPLASSAPPQSPAKPLKIPHPTDFK 60

Query: 61  TIEATPSGKSRFLIIGAVSVGVALFLIGCDGERALALGPEGPLVEEFWDNVRRYALYALT 120
           TIEATPSGKSRFLIIGAVSVGVALFLIGCDGERALALGPEGPLVEEFWDNVRRYALYALT
Sbjct: 61  TIEATPSGKSRFLIIGAVSVGVALFLIGCDGERALALGPEGPLVEEFWDNVRRYALYALT 120

Query: 121 VSTGAIYTILLPILELLKNPITAVLVLVIFGGAIFIISQVLSAMVGVTEFSYDYTY 177
           VSTGAIYTILLPILELLKNPITAVLVLVIFGGAIFIISQVLSAMVGVTEFSYDYTY
Sbjct: 121 VSTGAIYTILLPILELLKNPITAVLVLVIFGGAIFIISQVLSAMVGVTEFSYDYTY 176

[Close]

BLAST of Csa6G511100 vs. TrEMBL
Match: D7T5G1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0194g00160 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 3.5e-45
Identity = 98/161 (60.87%), Postives = 123/161 (76.40%), Query Frame = 1


Query: 24  PIKPISPIRTPFRPLASSAPPQSPA-KPL-------KIPHPTDFKTIEATPSGKSRFLII 83
           P KP S +  P +P + S P +    KPL       +   P+  +  + + +G SRF++I
Sbjct: 119 PFKPRSSLNHPAKPSSVSLPSRGHINKPLVSSGLTPRSQKPSKEEFCQVSANGCSRFVMI 178

Query: 84  GAVSVGVALFLIGCDGERALALGPEGPLVEEFWDNVRRYALYALTVSTGAIYTILLPILE 143
           GAVSVGV L L+G D  +ALALGPEGPL+EEFWDNVRRYALY LTVSTGA+YT+ +PILE
Sbjct: 179 GAVSVGVVLLLMGVDEHKALALGPEGPLMEEFWDNVRRYALYFLTVSTGAVYTVFVPILE 238

Query: 144 LLKNPITAVLVLVIFGGAIFIISQVLSAMVGVTEFSYDYTY 177
           LLKNPI+A+LVLVIFGG++FI+SQV+SAMVGVTEFSYDY+Y
Sbjct: 239 LLKNPISAILVLVIFGGSLFIVSQVISAMVGVTEFSYDYSY 279

[Close]

BLAST of Csa6G511100 vs. TrEMBL
Match: A5ADD6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_023242 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 7.8e-45
Identity = 97/161 (60.25%), Postives = 123/161 (76.40%), Query Frame = 1


Query: 24  PIKPISPIRTPFRPLASSAPPQSPA-KPL-------KIPHPTDFKTIEATPSGKSRFLII 83
           P KP S +  P +P + S P +    KPL       +   P+  +  + + +G SRF++I
Sbjct: 106 PFKPRSSLNHPAKPSSVSLPSRGHINKPLVSSGLTPRSQKPSKEEFCQVSANGCSRFVMI 165

Query: 84  GAVSVGVALFLIGCDGERALALGPEGPLVEEFWDNVRRYALYALTVSTGAIYTILLPILE 143
           GAVSVGV L L+G D  +ALALGPEGPL+EEFWDNVRRYALY LTVSTGA+YT+ +PILE
Sbjct: 166 GAVSVGVVLLLMGVDEHKALALGPEGPLMEEFWDNVRRYALYFLTVSTGAVYTVFVPILE 225

Query: 144 LLKNPITAVLVLVIFGGAIFIISQVLSAMVGVTEFSYDYTY 177
           LLKNPI+A+LVLVIFGG+++I+SQV+SAMVGVTEFSYDY+Y
Sbjct: 226 LLKNPISAILVLVIFGGSLYIVSQVISAMVGVTEFSYDYSY 266

[Close]

BLAST of Csa6G511100 vs. TrEMBL
Match: D7TZ28_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s1543g00010 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 2.3e-44
Identity = 103/173 (59.54%), Postives = 127/173 (73.41%), Query Frame = 1


Query: 5   FVTPFFPTFKTPLISLPSFPIKPISPIRTPF-RPLASSAPPQSPAKPLKIPHPTDFKTIE 64
           F+ PF P    P ++ P+ P     P R    +PL SS       KP K     +F  + 
Sbjct: 116 FLIPFKPR---PSLNHPAKPSSVSLPSRGHINKPLVSSGLTPRSQKPSK----EEFCQVS 175

Query: 65  ATPSGKSRFLIIGAVSVGVALFLIGCDGERALALGPEGPLVEEFWDNVRRYALYALTVST 124
           A  +G SRF++IGAVSVGV L L+G D  +ALALGPEGPL+EEFWDNVRRYALY LTVST
Sbjct: 176 A--NGCSRFVMIGAVSVGVVLLLMGVDEHKALALGPEGPLMEEFWDNVRRYALYFLTVST 235

Query: 125 GAIYTILLPILELLKNPITAVLVLVIFGGAIFIISQVLSAMVGVTEFSYDYTY 177
           GA+YT+ +PILELLKNPI+A+LVLVIFGG+++I+SQV+SAMVGVTEFSYDY+Y
Sbjct: 236 GAVYTVFVPILELLKNPISAILVLVIFGGSLYIVSQVISAMVGVTEFSYDYSY 279

[Close]

BLAST of Csa6G511100 vs. TrEMBL
Match: A0A061GIF1_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_030411 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 4.0e-41
Identity = 83/109 (76.15%), Postives = 99/109 (90.83%), Query Frame = 1


Query: 68  GKSRFLIIGAVSVGVALFLIGCDGERALALGPEGPLVEEFWDNVRRYALYALTVSTGAIY 127
           G SRF+I+GAVS+G+AL L+G D ++ALA GPEGPL+EEFWDNVRRYALYALTVSTGAIY
Sbjct: 86  GYSRFVIVGAVSIGLALLLMGADDQKALAFGPEGPLMEEFWDNVRRYALYALTVSTGAIY 145

Query: 128 TILLPILELLKNPITAVLVLVIFGGAIFIISQVLSAMVGVTEFSYDYTY 177
           TI  PILELLKNPI+A+L+LVI GG+I+I+SQ+LSAMVGVT+FSY Y Y
Sbjct: 146 TIFQPILELLKNPISAILILVIIGGSIYIVSQILSAMVGVTDFSYSYAY 194

[Close]

BLAST of Csa6G511100 vs. TAIR10
Match: AT4G16410.1 (AT4G16410.1 unknown protein)

HSP 1 Score: 149.1 bits (375), Expect = 2.6e-36
Identity = 68/107 (63.55%), Postives = 88/107 (82.24%), Query Frame = 1


Query: 71  RFLIIGAVSVGVALFLI-GCDGERALALGPEGPLVEEFWDNVRRYALYALTVSTGAIYTI 130
           R+ ++G VSVG+ + L+ G D E+A+ALGPEGPL+EEFWDNVRRY LYALTVSTGA+  +
Sbjct: 79  RYAVVGGVSVGLMMVLVLGMDAEKAMALGPEGPLMEEFWDNVRRYGLYALTVSTGALSAV 138

Query: 131 LLPILELLKNPITAVLVLVIFGGAIFIISQVLSAMVGVTEFSYDYTY 177
             PI ELLKNPI+A+L+L+I GG+ +I+SQV+SAM+GV EF+Y Y+Y
Sbjct: 139 FEPIFELLKNPISAILILLILGGSFYIVSQVVSAMIGVNEFAYQYSY 185

[Close]

BLAST of Csa6G511100 vs. NCBI nr
Match: gi|449434036|ref|XP_004134802.1| (PREDICTED: uncharacterized protein LOC101208124 [Cucumis sativus])

HSP 1 Score: 349.7 bits (896), Expect = 2.9e-93
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 1


Query: 1   MATSFVTPFFPTFKTPLISLPSFPIKPISPIRTPFRPLASSAPPQSPAKPLKIPHPTDFK 60
           MATSFVTPFFPTFKTPLISLPSFPIKPISPIRTPFRPLASSAPPQSPAKPLKIPHPTDFK
Sbjct: 1   MATSFVTPFFPTFKTPLISLPSFPIKPISPIRTPFRPLASSAPPQSPAKPLKIPHPTDFK 60

Query: 61  TIEATPSGKSRFLIIGAVSVGVALFLIGCDGERALALGPEGPLVEEFWDNVRRYALYALT 120
           TIEATPSGKSRFLIIGAVSVGVALFLIGCDGERALALGPEGPLVEEFWDNVRRYALYALT
Sbjct: 61  TIEATPSGKSRFLIIGAVSVGVALFLIGCDGERALALGPEGPLVEEFWDNVRRYALYALT 120

Query: 121 VSTGAIYTILLPILELLKNPITAVLVLVIFGGAIFIISQVLSAMVGVTEFSYDYTY 177
           VSTGAIYTILLPILELLKNPITAVLVLVIFGGAIFIISQVLSAMVGVTEFSYDYTY
Sbjct: 121 VSTGAIYTILLPILELLKNPITAVLVLVIFGGAIFIISQVLSAMVGVTEFSYDYTY 176

[Close]

BLAST of Csa6G511100 vs. NCBI nr
Match: gi|659079116|ref|XP_008440084.1| (PREDICTED: uncharacterized protein LOC103484667 [Cucumis melo])

HSP 1 Score: 331.6 bits (849), Expect = 8.2e-88
Identity = 165/176 (93.75%), Postives = 171/176 (97.16%), Query Frame = 1


Query: 1   MATSFVTPFFPTFKTPLISLPSFPIKPISPIRTPFRPLASSAPPQSPAKPLKIPHPTDFK 60
           MATSF+TPFFPTF+T LI LPSFP+KPI PIRTPFRPLASSA PQSPAKPLKIPHP+DFK
Sbjct: 1   MATSFITPFFPTFRTSLIPLPSFPVKPIPPIRTPFRPLASSASPQSPAKPLKIPHPSDFK 60

Query: 61  TIEATPSGKSRFLIIGAVSVGVALFLIGCDGERALALGPEGPLVEEFWDNVRRYALYALT 120
           TIEATPSGKSRFLIIGAVSVGVALFLIGCD ERALALGPEGPLVEEFWDNVRRYA+YALT
Sbjct: 61  TIEATPSGKSRFLIIGAVSVGVALFLIGCDSERALALGPEGPLVEEFWDNVRRYAIYALT 120

Query: 121 VSTGAIYTILLPILELLKNPITAVLVLVIFGGAIFIISQVLSAMVGVTEFSYDYTY 177
           VSTGAIYTILLPILELLKNPITAVLVLVIFGGAIFIISQVLSAMVGVTEFSYDY+Y
Sbjct: 121 VSTGAIYTILLPILELLKNPITAVLVLVIFGGAIFIISQVLSAMVGVTEFSYDYSY 176

[Close]

BLAST of Csa6G511100 vs. NCBI nr
Match: gi|297736708|emb|CBI25744.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 189.5 bits (480), Expect = 5.0e-45
Identity = 98/161 (60.87%), Postives = 123/161 (76.40%), Query Frame = 1


Query: 24  PIKPISPIRTPFRPLASSAPPQSPA-KPL-------KIPHPTDFKTIEATPSGKSRFLII 83
           P KP S +  P +P + S P +    KPL       +   P+  +  + + +G SRF++I
Sbjct: 119 PFKPRSSLNHPAKPSSVSLPSRGHINKPLVSSGLTPRSQKPSKEEFCQVSANGCSRFVMI 178

Query: 84  GAVSVGVALFLIGCDGERALALGPEGPLVEEFWDNVRRYALYALTVSTGAIYTILLPILE 143
           GAVSVGV L L+G D  +ALALGPEGPL+EEFWDNVRRYALY LTVSTGA+YT+ +PILE
Sbjct: 179 GAVSVGVVLLLMGVDEHKALALGPEGPLMEEFWDNVRRYALYFLTVSTGAVYTVFVPILE 238

Query: 144 LLKNPITAVLVLVIFGGAIFIISQVLSAMVGVTEFSYDYTY 177
           LLKNPI+A+LVLVIFGG++FI+SQV+SAMVGVTEFSYDY+Y
Sbjct: 239 LLKNPISAILVLVIFGGSLFIVSQVISAMVGVTEFSYDYSY 279

[Close]

BLAST of Csa6G511100 vs. NCBI nr
Match: gi|359495622|ref|XP_002268164.2| (PREDICTED: uncharacterized protein LOC100254484 [Vitis vinifera])

HSP 1 Score: 189.5 bits (480), Expect = 5.0e-45
Identity = 98/161 (60.87%), Postives = 123/161 (76.40%), Query Frame = 1


Query: 24  PIKPISPIRTPFRPLASSAPPQSPA-KPL-------KIPHPTDFKTIEATPSGKSRFLII 83
           P KP S +  P +P + S P +    KPL       +   P+  +  + + +G SRF++I
Sbjct: 30  PFKPRSSLNHPAKPSSVSLPSRGHINKPLVSSGLTPRSQKPSKEEFCQVSANGCSRFVMI 89

Query: 84  GAVSVGVALFLIGCDGERALALGPEGPLVEEFWDNVRRYALYALTVSTGAIYTILLPILE 143
           GAVSVGV L L+G D  +ALALGPEGPL+EEFWDNVRRYALY LTVSTGA+YT+ +PILE
Sbjct: 90  GAVSVGVVLLLMGVDEHKALALGPEGPLMEEFWDNVRRYALYFLTVSTGAVYTVFVPILE 149

Query: 144 LLKNPITAVLVLVIFGGAIFIISQVLSAMVGVTEFSYDYTY 177
           LLKNPI+A+LVLVIFGG++FI+SQV+SAMVGVTEFSYDY+Y
Sbjct: 150 LLKNPISAILVLVIFGGSLFIVSQVISAMVGVTEFSYDYSY 190

[Close]

BLAST of Csa6G511100 vs. NCBI nr
Match: gi|147787390|emb|CAN73304.1| (hypothetical protein VITISV_023242 [Vitis vinifera])

HSP 1 Score: 188.3 bits (477), Expect = 1.1e-44
Identity = 97/161 (60.25%), Postives = 123/161 (76.40%), Query Frame = 1


Query: 24  PIKPISPIRTPFRPLASSAPPQSPA-KPL-------KIPHPTDFKTIEATPSGKSRFLII 83
           P KP S +  P +P + S P +    KPL       +   P+  +  + + +G SRF++I
Sbjct: 106 PFKPRSSLNHPAKPSSVSLPSRGHINKPLVSSGLTPRSQKPSKEEFCQVSANGCSRFVMI 165

Query: 84  GAVSVGVALFLIGCDGERALALGPEGPLVEEFWDNVRRYALYALTVSTGAIYTILLPILE 143
           GAVSVGV L L+G D  +ALALGPEGPL+EEFWDNVRRYALY LTVSTGA+YT+ +PILE
Sbjct: 166 GAVSVGVVLLLMGVDEHKALALGPEGPLMEEFWDNVRRYALYFLTVSTGAVYTVFVPILE 225

Query: 144 LLKNPITAVLVLVIFGGAIFIISQVLSAMVGVTEFSYDYTY 177
           LLKNPI+A+LVLVIFGG+++I+SQV+SAMVGVTEFSYDY+Y
Sbjct: 226 LLKNPISAILVLVIFGGSLYIVSQVISAMVGVTEFSYDYSY 266

The following BLAST results are available for this feature:

BLAST of Csa6G511100 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KHP7_CUCSA	2.0e-93	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511100 PE=4 SV=1	[more]
D7T5G1_VITVI	3.5e-45	60.87	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0194g00160 PE=4 SV=...	[more]
A5ADD6_VITVI	7.8e-45	60.25	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_023242 PE=4 SV=1	[more]
D7TZ28_VITVI	2.3e-44	59.54	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s1543g00010 PE=4 SV=...	[more]
A0A061GIF1_THECC	4.0e-41	76.15	Uncharacterized protein OS=Theobroma cacao GN=TCM_030411 PE=4 SV=1	[more]

BLAST of Csa6G511100 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G16410.1	2.6e-36	63.55	unknown protein	[more]

BLAST of Csa6G511100 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449434036\|ref\|XP_004134802.1\|	2.9e-93	100.00	PREDICTED: uncharacterized protein LOC101208124 [Cucumis sativus]	[more]
gi\|659079116\|ref\|XP_008440084.1\|	8.2e-88	93.75	PREDICTED: uncharacterized protein LOC103484667 [Cucumis melo]	[more]
gi\|297736708\|emb\|CBI25744.3\|	5.0e-45	60.87	unnamed protein product [Vitis vinifera]	[more]
gi\|359495622\|ref\|XP_002268164.2\|	5.0e-45	60.87	PREDICTED: uncharacterized protein LOC100254484 [Vitis vinifera]	[more]
gi\|147787390\|emb\|CAN73304.1\|	1.1e-44	60.25	hypothetical protein VITISV_023242 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008470	Uncharacterised_Ycf33

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU097477	cucumber EST collection version 3.0	transcribed_cluster
CU108735	cucumber EST collection version 3.0	transcribed_cluster
CU145325	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa6G511100.1	Csa6G511100.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU145325	CU145325	transcribed_cluster
CU097477	CU097477	transcribed_cluster
CU108735	CU108735	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008470	Uncharacterised protein family Ycf33	PFAM	PF05421	DUF751	coord: 107..166 score: 4.2
None	No IPR available	PANTHER	PTHR36049	FAMILY NOT NAMED	coord: 68..176 score: 1.1
None	No IPR available	PANTHER	PTHR36049:SF3	SUBFAMILY NOT NAMED	coord: 68..176 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa6G511100	Cla014394	Watermelon (97103) v1	cuwmB500
Csa6G511100	MELO3C007446	Melon (DHL92) v3.5.1	cumeB507
Csa6G511100	ClCG01G021340	Watermelon (Charleston Gray)	cuwcgB432
Csa6G511100	Lsi01G004910	Bottle gourd (USVL1VR-Ls)	culsiB434
Csa6G511100	MELO3C007446.2	Melon (DHL92) v3.6.1	cumedB486
Csa6G511100	Cla97C01G020920	Watermelon (97103) v2	cuwmbB412
Csa6G511100	Bhi03G000512	Wax gourd	cuwgoB628
Csa6G511100	Cucsa.044670	Cucumber (Gy14) v1	cgycuB027
Csa6G511100	CmaCh03G005830	Cucurbita maxima (Rimu)	cmacuB681
Csa6G511100	CmoCh03G006090	Cucurbita moschata (Rifu)	cmocuB670
Csa6G511100	CmoCh07G003470	Cucurbita moschata (Rifu)	cmocuB865
Csa6G511100	Cp4.1LG19g08020	Cucurbita pepo (Zucchini)	cpecuB503
Csa6G511100	Cp4.1LG10g09910	Cucurbita pepo (Zucchini)	cpecuB085
Csa6G511100	Carg00504	Silver-seed gourd	carcuB0441
Csa6G511100	Carg07882	Silver-seed gourd	carcuB0663

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa6G511100	Cucumber (Chinese Long) v2	cucuB042
Csa6G511100	Cucurbita maxima (Rimu)	cmacuB425
Csa6G511100	Cucurbita maxima (Rimu)	cmacuB877
Csa6G511100	Cucumber (Gy14) v2	cgybcuB041
Csa6G511100	Cucumber (Gy14) v2	cgybcuB045
Csa6G511100	Cucumber (Gy14) v2	cgybcuB281