Cucsa.307960 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.307960
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Two-component response regulator
Location	scaffold02978 : 252242 .. 254267 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTGGATTGAGTTGGGGGGGgAGAGAAAGAGAGATTATGTAACAAAATCTGTGGGATCTTCCTTTCCAAACTGTCAAAATTTTGTAAGGATTTCTCCATATCTCAAATTCCTCATTCTAATAaTAATATCTTCTTCTCACGCAATCTCTTCTTCTTTCTTCCCCATTTCATTTATAAATCCTCTCTCCTTCTTCTCCTTCCCACCAAATTTCCCTTTCCTCTTCTTCTTCTTCTTCCTTCCTCTTCTTTCTTTGATATATATTAATATAATGTCCCTTCTCTCTTCTGATCAGCCTCGCTTTCATGTTTTGGCTGTTGATGACAGCCTTGTTGACAGGAAGCTCATTGAAAGGCTCCTCAAAACTTCCTCCTTCAATGGTAACTCTCTCTTTTTCTTACTTCTTCTGCTCTTCACTACAACTTTGACTGATTTTTATATATGTTCCATTTTTtCTTTTtATCTTTTAATTTGGGTTCATCCGTAGTTTTATATACTCTATAATTCTCTGCGGTTTAATTTCCCAAATTATTGTTAGTCCATTACTGGATCTTGTGCTGATTGTTGTCCAATCTTTTGGCTAAGTTTAACATGATATTGGATGAACTACTGCAATGTAATTATAATTTTCTCCTCGATTATACTGTTAATAATCAGAGCTATATTGGAATGACTTTCCAAAGCCTTAGTGGGTTTTTTTTtCTCTTTCAATTCAAGCGCACTTAGAAATTAGTCATTGGTTGTGCTGAGAGATGATTGATTTAACAAGCTTGATTtGTTTTTTtTTTTTTTttCACAGTTACTGTTGTGGATTCTGGAAGCAAAGCTTTAGAGCTTCTGGGTTTGGTTAGAGAAAGAAATGGAACCAACCACAGTTCTCCTATTTCCCCTGAAGATCATCGTCAACATCATCAAGTACCATATATATATTCAAGCTTAATTTGGATGTTTGTTTGTTTTTTTtAGGCATTGTTTGATTAATTTAGCTTTTGATATTGCATTGCAGGAGATTGAAGTTAATCTCATCATTACAGATTATTGTATGCCAGAGATGACAGGCTTTGATCTTCTCAGAAAGATCAAGGCAAGTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAAGTCAAGaCACACATATATATGCTTTGTTTTTtAATAATTAGTTGGGTTTTCACTTTCCAAGCAATGTTTTATTCTTtCTCCATCTCCTTCCAAACACAAAATCTGAAAAaGAAAATTCCATctGATTTTGTAGGAATCTGACTCACTTAAAGACATTCCTGTTGTGATTATGTCCTCTGAGAATGTTCCATCAAGAATCAACAGGTGATGAAAACTCATAGAACAAACCAAGAATAACAACCtttttttttttttttttttttttttaTTAATAATtaTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtaTAatAATtATTTCAAGCTAGCATATCAAAATCTGAAAGGaTAAACCaGAAAATGTATGTGAATCTCTGAATCTGAACTAAGTTTTGGTTGAATCAGATGTTTGGAAGAAGGAGCTGAGGAGTTTTTGCTTAAACCAGTGAAATTATCTGATGTGAACAAGCTTAAGCCTTTTATATGTAGAGGAATAAAAGCCAAAGAAATGGATTTCAACCATCTCAAGAGAAAGGAAATGGAAATCATATGAAAG

mRNA sequence

ATGGGTTGGATTGAGTTGGGGGGGGAGAGAAAGAGAGATTATGTAACAAAATCTGTGGGATCTTCCTTTCCAAACTGTCAAAATTTTGTAAGGATTTCTCCATATCTCAAATTCCTCATTCTAATAATAATATCTTCTTCTCACGCAATCTCTTCTTCTTTCTTCCCCATTTCATTTATAAATCCTCTCTCCTTCTTCTCCTTCCCACCAAATTTCCCTttcctcttcttcttcttcttccttcctcttcttTCTTTGATATATATTAATATAATGTCCCTTCTCTCTTCTGATCAGCCTCGCTTTCATGTTTTGGCTGTTGATGACAGCCTTGTTGACAGGAAGCTCATTGAAAGGCTCCTCAAAACTTCCTCCTTCAATGTTACTGTTGTGGATTCTGGAAGCAAAGCTTTAGAGCTTCTGGGTTTGGTTAGAGAAAGAAATGGAACCAACCACAGTTCTCCTATTTCCCCTGAAGATCATCGTCAACATCATCAAGAGATTGAAGTTAATCTCATCATTACAGATTATTGTATGCCAGAGATGACAGGCTTTGATCTTCTCAGAAAGATCAAGGAATCTGACTCACTTAAAGACATTCCTGTTGTGATTATGTCCTCTGAGAATGTTCCATCAAGAATCAACAGATGTTTGGAAGAAGGAGCTGAGGAGTTTTTGCTTAAACCAGTGAAATTATCTGATGTGAACAAGCTTAAGCCTTTTATATGTAGAGGAATAAAAGCCAAAGAAATGGATTTCAACCATCTCAAGAGAAAGGAAATGGAAATCATATGAAAG

Coding sequence (CDS)

ATGGGTTGGATTGAGTTGGGGGGGgAGAGAAAGAGAGATTATGTAACAAAATCTGTGGGATCTTCCTTTCCAAACTGTCAAAATTTTGTAAGGATTTCTCCATATCTCAAATTCCTCATTCTAATAaTAATATCTTCTTCTCACGCAATCTCTTCTTCTTTCTTCCCCATTTCATTTATAAATCCTCTCTCCTTCTTCTCCTTCCCACCAAATTTCCCTTTCCTCTTCTTCTTCTTCTTCCTTCCTCTTCTTTCTTTGATATATATTAATATAATGTCCCTTCTCTCTTCTGATCAGCCTCGCTTTCATGTTTTGGCTGTTGATGACAGCCTTGTTGACAGGAAGCTCATTGAAAGGCTCCTCAAAACTTCCTCCTTCAATGTTACTGTTGTGGATTCTGGAAGCAAAGCTTTAGAGCTTCTGGGTTTGGTTAGAGAAAGAAATGGAACCAACCACAGTTCTCCTATTTCCCCTGAAGATCATCGTCAACATCATCAAGAGATTGAAGTTAATCTCATCATTACAGATTATTGTATGCCAGAGATGACAGGCTTTGATCTTCTCAGAAAGATCAAGGAATCTGACTCACTTAAAGACATTCCTGTTGTGATTATGTCCTCTGAGAATGTTCCATCAAGAATCAACAGATGTTTGGAAGAAGGAGCTGAGGAGTTTTTGCTTAAACCAGTGAAATTATCTGATGTGAACAAGCTTAAGCCTTTTATATGTAGAGGAATAAAAGCCAAAGAAATGGATTTCAACCATCTCAAGAGAAAGGAAATGGAAATCATATGA

Protein sequence

MGWIELGGERKRDYVTKSVGSSFPNCQNFVRISPYLKFLILIIISSSHAISSSFFPISFINPLSFFSFPPNFPFLFFFFFLPLLSLIYINIMSLLSSDQPRFHVLAVDDSLVDRKLIERLLKTSSFNVTVVDSGSKALELLGLVRERNGTNHSSPISPEDHRQHHQEIEVNLIITDYCMPEMTGFDLLRKIKESDSLKDIPVVIMSSENVPSRINRCLEEGAEEFLLKPVKLSDVNKLKPFICRGIKAKEMDFNHLKRKEMEII*

Homology

[Close]

BLAST of Cucsa.307960 vs. Swiss-Prot
Match: ORR4_ORYSI (Two-component response regulator ORR4 OS=Oryza sativa subsp. indica GN=RR4 PE=2 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 2.3e-49
Identity = 104/146 (71.23%), Postives = 119/146 (81.51%), Query Frame = 1


Query: 99  QPRFHVLAVDDSLVDRKLIERLLKTSSFNVTVVDSGSKALELLGLVRERNGTNHSSPISP 158
           + RFHVLAVDDSL+DRKLIE LLK SS+ VT VDSGSKALELLGL  E  G + SS  SP
Sbjct: 7   ESRFHVLAVDDSLIDRKLIEMLLKNSSYQVTTVDSGSKALELLGLRDE--GDDSSS--SP 66

Query: 159 EDHRQHHQEIEVNLIITDYCMPEMTGFDLLRKIKESDSLKDIPVVIMSSENVPSRINRCL 218
                 HQEI+VNLIITDYCMP MTG+DLL+++K S SLKDIPVVIMSSENVP+RINRCL
Sbjct: 67  SSSSPDHQEIDVNLIITDYCMPGMTGYDLLKRVKGSSSLKDIPVVIMSSENVPARINRCL 126

Query: 219 EEGAEEFLLKPVKLSDVNKLKPFICR 245
           E+GAEEF LKPVKL+D+ KLK  + +
Sbjct: 127 EDGAEEFFLKPVKLADMKKLKSHLLK 148

[Close]

BLAST of Cucsa.307960 vs. Swiss-Prot
Match: ORR4_ORYSJ (Two-component response regulator ORR4 OS=Oryza sativa subsp. japonica GN=RR4 PE=2 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 2.3e-49
Identity = 104/146 (71.23%), Postives = 119/146 (81.51%), Query Frame = 1


Query: 99  QPRFHVLAVDDSLVDRKLIERLLKTSSFNVTVVDSGSKALELLGLVRERNGTNHSSPISP 158
           + RFHVLAVDDSL+DRKLIE LLK SS+ VT VDSGSKALELLGL  E  G + SS  SP
Sbjct: 7   ESRFHVLAVDDSLIDRKLIEMLLKNSSYQVTTVDSGSKALELLGLRDE--GDDSSS--SP 66

Query: 159 EDHRQHHQEIEVNLIITDYCMPEMTGFDLLRKIKESDSLKDIPVVIMSSENVPSRINRCL 218
                 HQEI+VNLIITDYCMP MTG+DLL+++K S SLKDIPVVIMSSENVP+RINRCL
Sbjct: 67  SSSSPDHQEIDVNLIITDYCMPGMTGYDLLKRVKGSSSLKDIPVVIMSSENVPARINRCL 126

Query: 219 EEGAEEFLLKPVKLSDVNKLKPFICR 245
           E+GAEEF LKPVKL+D+ KLK  + +
Sbjct: 127 EDGAEEFFLKPVKLADMKKLKSHLLK 148

[Close]

BLAST of Cucsa.307960 vs. Swiss-Prot
Match: ORR9_ORYSJ (Two-component response regulator ORR9 OS=Oryza sativa subsp. japonica GN=RR9 PE=2 SV=2)

HSP 1 Score: 195.3 bits (495), Expect = 8.6e-49
Identity = 102/143 (71.33%), Postives = 114/143 (79.72%), Query Frame = 1


Query: 102 FHVLAVDDSLVDRKLIERLLKTSSFNVTVVDSGSKALELLGLVRERNGTNHSSPISPEDH 161
           FHVLAVDDSL DRKLIERLLKTSSF VT VDSGSKALE LGL        H    SP   
Sbjct: 9   FHVLAVDDSLPDRKLIERLLKTSSFQVTTVDSGSKALEFLGL--------HDHEDSPIST 68

Query: 162 RQHHQEIEVNLIITDYCMPEMTGFDLLRKIKESDSLKDIPVVIMSSENVPSRINRCLEEG 221
           +   QE+ VNLIITDYCMP MTG+DLL+KIKES  L+DIPVVIMSS+N+PSRINRCLEEG
Sbjct: 69  QSDQQEVAVNLIITDYCMPGMTGYDLLKKIKESSYLRDIPVVIMSSDNIPSRINRCLEEG 128

Query: 222 AEEFLLKPVKLSDVNKLKPFICR 245
           A+EF LKPV+LSD++KLKP I +
Sbjct: 129 ADEFFLKPVRLSDMSKLKPHILK 143

[Close]

BLAST of Cucsa.307960 vs. Swiss-Prot
Match: ORR9_ORYSI (Two-component response regulator ORR9 OS=Oryza sativa subsp. indica GN=RR9 PE=2 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 8.6e-49
Identity = 102/143 (71.33%), Postives = 114/143 (79.72%), Query Frame = 1


Query: 102 FHVLAVDDSLVDRKLIERLLKTSSFNVTVVDSGSKALELLGLVRERNGTNHSSPISPEDH 161
           FHVLAVDDSL DRKLIERLLKTSSF VT VDSGSKALE LGL        H    SP   
Sbjct: 9   FHVLAVDDSLPDRKLIERLLKTSSFQVTTVDSGSKALEFLGL--------HDHEDSPIST 68

Query: 162 RQHHQEIEVNLIITDYCMPEMTGFDLLRKIKESDSLKDIPVVIMSSENVPSRINRCLEEG 221
           +   QE+ VNLIITDYCMP MTG+DLL+KIKES  L+DIPVVIMSS+N+PSRINRCLEEG
Sbjct: 69  QSDQQEVAVNLIITDYCMPGMTGYDLLKKIKESSYLRDIPVVIMSSDNIPSRINRCLEEG 128

Query: 222 AEEFLLKPVKLSDVNKLKPFICR 245
           A+EF LKPV+LSD++KLKP I +
Sbjct: 129 ADEFFLKPVRLSDMSKLKPHILK 143

[Close]

BLAST of Cucsa.307960 vs. Swiss-Prot
Match: ORR10_ORYSI (Two-component response regulator ORR10 OS=Oryza sativa subsp. indica GN=RR10 PE=2 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 1.1e-48
Identity = 102/143 (71.33%), Postives = 114/143 (79.72%), Query Frame = 1


Query: 102 FHVLAVDDSLVDRKLIERLLKTSSFNVTVVDSGSKALELLGLVRERNGTNHSSPISPEDH 161
           FHVLAVDDSL DRKLIERLLKTSSF VT VDSGSKALE LGL        H    SP   
Sbjct: 9   FHVLAVDDSLPDRKLIERLLKTSSFQVTTVDSGSKALEFLGL--------HDHEDSPIST 68

Query: 162 RQHHQEIEVNLIITDYCMPEMTGFDLLRKIKESDSLKDIPVVIMSSENVPSRINRCLEEG 221
           +   QE+ VNLIITDYCMP MTG+DLL+KIKES  L+DIPVVIMSS+N+PSRINRCLEEG
Sbjct: 69  QSDQQEVGVNLIITDYCMPGMTGYDLLKKIKESSYLRDIPVVIMSSDNIPSRINRCLEEG 128

Query: 222 AEEFLLKPVKLSDVNKLKPFICR 245
           A+EF LKPV+LSD++KLKP I +
Sbjct: 129 ADEFFLKPVRLSDMSKLKPHILK 143

[Close]

BLAST of Cucsa.307960 vs. TrEMBL
Match: A0A0A0KV44_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G623800 PE=4 SV=1)

HSP 1 Score: 342.4 bits (877), Expect = 4.8e-91
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 1


Query: 92  MSLLSSDQPRFHVLAVDDSLVDRKLIERLLKTSSFNVTVVDSGSKALELLGLVRERNGTN 151
           MSLLSSDQPRFHVLAVDDSLVDRKLIERLLKTSSFNVTVVDSGSKALELLGLVRERNGTN
Sbjct: 1   MSLLSSDQPRFHVLAVDDSLVDRKLIERLLKTSSFNVTVVDSGSKALELLGLVRERNGTN 60

Query: 152 HSSPISPEDHRQHHQEIEVNLIITDYCMPEMTGFDLLRKIKESDSLKDIPVVIMSSENVP 211
           HSSPISPEDHRQHHQEIEVNLIITDYCMPEMTGFDLLRKIKESDSLKDIPVVIMSSENVP
Sbjct: 61  HSSPISPEDHRQHHQEIEVNLIITDYCMPEMTGFDLLRKIKESDSLKDIPVVIMSSENVP 120

Query: 212 SRINRCLEEGAEEFLLKPVKLSDVNKLKPFICRGIKAKEMDFNHLKRKEMEII 265
           SRINRCLEEGAEEFLLKPVKLSDVNKLKPFICRGIKAKEMDFNHLKRKEMEII
Sbjct: 121 SRINRCLEEGAEEFLLKPVKLSDVNKLKPFICRGIKAKEMDFNHLKRKEMEII 173

[Close]

BLAST of Cucsa.307960 vs. TrEMBL
Match: A0A067KWD7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24525 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 5.0e-56
Identity = 122/166 (73.49%), Postives = 138/166 (83.13%), Query Frame = 1


Query: 99  QPRFHVLAVDDSLVDRKLIERLLKTSSFNVTVVDSGSKALELLGLVRERNGTNHSSPISP 158
           +P+FHVLAVDDSL+DRKLIERLLKTSS++VT VDSGSKALE LGL  E    ++ + +SP
Sbjct: 6   EPQFHVLAVDDSLIDRKLIERLLKTSSYHVTAVDSGSKALEFLGLNEEEQIDSNLTSVSP 65

Query: 159 EDHRQHHQEIEVNLIITDYCMPEMTGFDLLRKIKESDSLKDIPVVIMSSENVPSRINRCL 218
                HHQ++EVNLIITDYCMP MTG+DLLRKIKES SLKDIPVVIMSSENVPSRINRCL
Sbjct: 66  PG--DHHQDVEVNLIITDYCMPGMTGYDLLRKIKESKSLKDIPVVIMSSENVPSRINRCL 125

Query: 219 EEGAEEFLLKPVKLSDVNKLKPFICRGIKAKEMDFNHLKRKEMEII 265
           EEGAEEF LKPV+LSDVNKLKP + +G KAKE D    KRK M+ I
Sbjct: 126 EEGAEEFFLKPVQLSDVNKLKPHLMKG-KAKE-DEPSNKRKGMDEI 167

[Close]

BLAST of Cucsa.307960 vs. TrEMBL
Match: B9RGB1_RICCO (Two-component response regulator ARR8, putative OS=Ricinus communis GN=RCOM_1452640 PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 1.2e-54
Identity = 122/170 (71.76%), Postives = 136/170 (80.00%), Query Frame = 1


Query: 101 RFHVLAVDDSLVDRKLIERLLKTSSFNVTVVDSGSKALELLGLVRERNGTNH------SS 160
           +FHVLAVDDSL+DRKLIERLLKTSSF+VT VDSGSKALE LGL  E            SS
Sbjct: 8   QFHVLAVDDSLIDRKLIERLLKTSSFHVTAVDSGSKALEFLGLNEEEEEEEEEEERRDSS 67

Query: 161 PISPEDHRQHHQEIEVNLIITDYCMPEMTGFDLLRKIKESDSLKDIPVVIMSSENVPSRI 220
           PIS     +HHQ+++VNLIITDYCMP MTG+DLLRKIKES S KDIPVVIMSSENVPSRI
Sbjct: 68  PISVCPDDEHHQDLQVNLIITDYCMPGMTGYDLLRKIKESKSFKDIPVVIMSSENVPSRI 127

Query: 221 NRCLEEGAEEFLLKPVKLSDVNKLKPFICRGIKAKEMDFNHLKRKEMEII 265
           NRCLEEGAEEF LKPV+LSDVNKLKP + +G K +E + N+ KRK ME I
Sbjct: 128 NRCLEEGAEEFFLKPVQLSDVNKLKPHMMKG-KTRENEPNN-KRKGMEEI 175

[Close]

BLAST of Cucsa.307960 vs. TrEMBL
Match: A0A061FRZ9_THECC (Two-component response regulator ARR8 OS=Theobroma cacao GN=TCM_045246 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 6.2e-54
Identity = 117/168 (69.64%), Postives = 136/168 (80.95%), Query Frame = 1


Query: 99  QPRFHVLAVDDSLVDRKLIERLLKTSSFNVTVVDSGSKALELLGLV-RERNGTNHSSPIS 158
           + +FHVLAVDDSL+DRKLIERLLKTSS++VT VDSGSKALE LGL     +G  + SP S
Sbjct: 6   EAQFHVLAVDDSLIDRKLIERLLKTSSYHVTAVDSGSKALEFLGLNGSHEDGQRNPSPAS 65

Query: 159 PE-DHRQHHQEIEVNLIITDYCMPEMTGFDLLRKIKESDSLKDIPVVIMSSENVPSRINR 218
              D  QH Q++EVNLIITDYCMP MTG+DLLR+IK S S KDIPVVIMSSEN+PSRINR
Sbjct: 66  VSLDEDQHQQDVEVNLIITDYCMPGMTGYDLLRRIKGSSSFKDIPVVIMSSENIPSRINR 125

Query: 219 CLEEGAEEFLLKPVKLSDVNKLKPFICRGIKAKEMDFNHLKRKEMEII 265
           CLE+GAEEF LKPV+LSDVNKL+P + +G ++KEM  N  KRK ME I
Sbjct: 126 CLEDGAEEFFLKPVQLSDVNKLRPHLMKG-RSKEMQQNISKRKGMEEI 172

[Close]

BLAST of Cucsa.307960 vs. TrEMBL
Match: B9GWX3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s19710g PE=4 SV=2)

HSP 1 Score: 216.5 bits (550), Expect = 4.0e-53
Identity = 120/168 (71.43%), Postives = 137/168 (81.55%), Query Frame = 1


Query: 99  QPRFHVLAVDDSLVDRKLIERLLKTSSFNVTVVDSGSKALELLGLVR--ERNGTNHSSPI 158
           + +FHVLAVDDSL+DRKLIERLLKTSS+ VT VDSGSKALE LGL    E+  +N SS +
Sbjct: 10  ETQFHVLAVDDSLIDRKLIERLLKTSSYQVTAVDSGSKALEFLGLSGDDEQRDSNPSS-V 69

Query: 159 SPEDHRQHHQEIEVNLIITDYCMPEMTGFDLLRKIKESDSLKDIPVVIMSSENVPSRINR 218
           SP DH  HHQ IE+N+IITDYCMP MTG+DLL+KIKES   KDIPVVIMSSENVPSRINR
Sbjct: 70  SP-DH--HHQHIEINMIITDYCMPGMTGYDLLKKIKESKYFKDIPVVIMSSENVPSRINR 129

Query: 219 CLEEGAEEFLLKPVKLSDVNKLKPFICRGIKAKEMDFNHLKRKEMEII 265
           CLEEGAEEF LKPV+LSDVNKL+P + +G + KE D  + KRK ME I
Sbjct: 130 CLEEGAEEFFLKPVQLSDVNKLRPHLMKG-RCKEEDQPNNKRKGMEEI 172

[Close]

BLAST of Cucsa.307960 vs. TAIR10
Match: AT3G57040.1 (AT3G57040.1 response regulator 9)

HSP 1 Score: 191.4 bits (485), Expect = 7.0e-49
Identity = 98/146 (67.12%), Postives = 118/146 (80.82%), Query Frame = 1


Query: 99  QPRFHVLAVDDSLVDRKLIERLLKTSSFNVTVVDSGSKALELLGLVRERNGTNHSSPISP 158
           + +FHVLAVDDSL DRKLIERLL+ SS  VT VDSGSKALE LGL   R  T+ + P + 
Sbjct: 6   ESQFHVLAVDDSLFDRKLIERLLQKSSCQVTTVDSGSKALEFLGL---RQSTDSNDPNAF 65

Query: 159 EDHRQHHQEIEVNLIITDYCMPEMTGFDLLRKIKESDSLKDIPVVIMSSENVPSRINRCL 218
                +HQ +EVNLIITDYCMP MTG+DLL+K+KES + +DIPVVIMSSENVP+RI+RCL
Sbjct: 66  SKAPVNHQVVEVNLIITDYCMPGMTGYDLLKKVKESSAFRDIPVVIMSSENVPARISRCL 125

Query: 219 EEGAEEFLLKPVKLSDVNKLKPFICR 245
           EEGAEEF LKPV+L+D+NKLKP + +
Sbjct: 126 EEGAEEFFLKPVRLADLNKLKPHMMK 148

[Close]

BLAST of Cucsa.307960 vs. TAIR10
Match: AT2G41310.1 (AT2G41310.1 response regulator 3)

HSP 1 Score: 189.5 bits (480), Expect = 2.6e-48
Identity = 101/159 (63.52%), Postives = 122/159 (76.73%), Query Frame = 1


Query: 94  LLSSDQPRFHVLAVDDSLVDRKLIERLLKTSSFNVTVVDSGSKALELLGLVRERNGTNHS 153
           ++   + +FHVLAVDDSL DRK+IERLL+ SS  VT VDSGSKALE LGL  + N  N  
Sbjct: 1   MVMETESKFHVLAVDDSLFDRKMIERLLQKSSCQVTTVDSGSKALEFLGLRVDDNDPNAL 60

Query: 154 SPISPEDHRQHHQEIEVNLIITDYCMPEMTGFDLLRKIKESDSLKDIPVVIMSSENVPSR 213
           S  SP    Q HQE+E+NLIITDYCMP MTG+DLL+K+KES + + IPVVIMSSENVP+R
Sbjct: 61  ST-SP----QIHQEVEINLIITDYCMPGMTGYDLLKKVKESAAFRSIPVVIMSSENVPAR 120

Query: 214 INRCLEEGAEEFLLKPVKLSDVNKLKPFICRGIKAKEMD 253
           I+RCLEEGAEEF LKPVKL+D+ KLKP + +    KE +
Sbjct: 121 ISRCLEEGAEEFFLKPVKLADLTKLKPHMMKTKLKKESE 154

[Close]

BLAST of Cucsa.307960 vs. TAIR10
Match: AT1G74890.1 (AT1G74890.1 response regulator 15)

HSP 1 Score: 171.0 bits (432), Expect = 9.7e-43
Identity = 94/169 (55.62%), Postives = 122/169 (72.19%), Query Frame = 1


Query: 93  SLLSSDQPRFHVLAVDDSLVDRKLIERLLKTSSFNVTVVDSGSKALELLGLVRERNGTNH 152
           SL SS  P  HVLAVDDS VDRK+IERLLK S+  VT V+SG++AL+ LGL    +G N 
Sbjct: 9   SLSSSSSPELHVLAVDDSFVDRKVIERLLKISACKVTTVESGTRALQYLGL----DGDNG 68

Query: 153 SSPISPEDHRQHHQEIEVNLIITDYCMPEMTGFDLLRKIKESDSLKDIPVVIMSSENVPS 212
           SS +         ++++VNLI+TDY MP +TG++LL+KIKES +L++IPVVIMSSEN+  
Sbjct: 69  SSGL---------KDLKVNLIVTDYSMPGLTGYELLKKIKESSALREIPVVIMSSENIQP 128

Query: 213 RINRCLEEGAEEFLLKPVKLSDVNKLKPFICRGIKAKEMDFNHLKRKEM 262
           RI +C+ EGAEEFLLKPVKL+DV +LK  I RG +A+E     L  K +
Sbjct: 129 RIEQCMIEGAEEFLLKPVKLADVKRLKELIMRGGEAEEGKTKKLSPKRI 164

[Close]

BLAST of Cucsa.307960 vs. TAIR10
Match: AT1G59940.1 (AT1G59940.1 response regulator 3)

HSP 1 Score: 163.7 bits (413), Expect = 1.6e-40
Identity = 86/150 (57.33%), Postives = 110/150 (73.33%), Query Frame = 1


Query: 98  DQPRFHVLAVDDSLVDRKLIERLLKTSSFNVTVVDSGSKALELLGLVRERNGTNHSSPIS 157
           D  + HVLAVDDSLVDR +IERLL+ +S  VT VDSG +ALE LGL  ++          
Sbjct: 29  DSDQVHVLAVDDSLVDRIVIERLLRITSCKVTAVDSGWRALEFLGLDDDKAAVEFD---- 88

Query: 158 PEDHRQHHQEIEVNLIITDYCMPEMTGFDLLRKIKESDSLKDIPVVIMSSENVPSRINRC 217
                     ++V+LIITDYCMP MTG++LL+KIKES S K++PVVIMSSENV +RI+RC
Sbjct: 89  ---------RLKVDLIITDYCMPGMTGYELLKKIKESTSFKEVPVVIMSSENVMTRIDRC 148

Query: 218 LEEGAEEFLLKPVKLSDVNKLKPFICRGIK 248
           LEEGAE+FLLKPVKL+DV +L+ ++ R +K
Sbjct: 149 LEEGAEDFLLKPVKLADVKRLRSYLTRDVK 165

[Close]

BLAST of Cucsa.307960 vs. TAIR10
Match: AT3G48100.1 (AT3G48100.1 response regulator 5)

HSP 1 Score: 162.2 bits (409), Expect = 4.5e-40
Identity = 90/161 (55.90%), Postives = 122/161 (75.78%), Query Frame = 1


Query: 103 HVLAVDDSLVDRKLIERLLKTSSFNVTVVDSGSKALELLGLVRERNGTNHSSPISPEDHR 162
           HVLAVDDS+VDRK IERLL+ SS  VTVVDS ++AL+ LGL    +G N+SS        
Sbjct: 26  HVLAVDDSMVDRKFIERLLRVSSCKVTVVDSATRALQYLGL----DGENNSSV------- 85

Query: 163 QHHQEIEVNLIITDYCMPEMTGFDLLRKIKESDSLKDIPVVIMSSENVPSRINRCLEEGA 222
              +++++NLI+TDY MP MTG++LL+KIKES + ++IPVVIMSSEN+  RI+RCLEEGA
Sbjct: 86  -GFEDLKINLIMTDYSMPGMTGYELLKKIKESSAFREIPVVIMSSENILPRIDRCLEEGA 145

Query: 223 EEFLLKPVKLSDVNKLKPFICRGIKAKEMDF-NHLKRKEME 263
           E+FLLKPVKL+DV +L+  +   +KA+E  F N + ++E+E
Sbjct: 146 EDFLLKPVKLADVKRLRDSL---MKAEERAFKNIMHKRELE 171

[Close]

BLAST of Cucsa.307960 vs. NCBI nr
Match: gi|449449356|ref|XP_004142431.1| (PREDICTED: two-component response regulator ARR9-like [Cucumis sativus])

HSP 1 Score: 342.4 bits (877), Expect = 6.9e-91
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 1


Query: 92  MSLLSSDQPRFHVLAVDDSLVDRKLIERLLKTSSFNVTVVDSGSKALELLGLVRERNGTN 151
           MSLLSSDQPRFHVLAVDDSLVDRKLIERLLKTSSFNVTVVDSGSKALELLGLVRERNGTN
Sbjct: 1   MSLLSSDQPRFHVLAVDDSLVDRKLIERLLKTSSFNVTVVDSGSKALELLGLVRERNGTN 60

Query: 152 HSSPISPEDHRQHHQEIEVNLIITDYCMPEMTGFDLLRKIKESDSLKDIPVVIMSSENVP 211
           HSSPISPEDHRQHHQEIEVNLIITDYCMPEMTGFDLLRKIKESDSLKDIPVVIMSSENVP
Sbjct: 61  HSSPISPEDHRQHHQEIEVNLIITDYCMPEMTGFDLLRKIKESDSLKDIPVVIMSSENVP 120

Query: 212 SRINRCLEEGAEEFLLKPVKLSDVNKLKPFICRGIKAKEMDFNHLKRKEMEII 265
           SRINRCLEEGAEEFLLKPVKLSDVNKLKPFICRGIKAKEMDFNHLKRKEMEII
Sbjct: 121 SRINRCLEEGAEEFLLKPVKLSDVNKLKPFICRGIKAKEMDFNHLKRKEMEII 173

[Close]

BLAST of Cucsa.307960 vs. NCBI nr
Match: gi|659092213|ref|XP_008446956.1| (PREDICTED: two-component response regulator ARR9-like isoform X1 [Cucumis melo])

HSP 1 Score: 328.6 bits (841), Expect = 1.0e-86
Identity = 167/174 (95.98%), Postives = 171/174 (98.28%), Query Frame = 1


Query: 92  MSLLSSDQPRFHVLAVDDSLVDRKLIERLLKTSSFNVTVVDSGSKALELLGLVRERNGTN 151
           MSLLSSDQPRFHVLAVDDSLVDRKLIERLLKTSSFNVT VDSGSKALELLGLVRERNGTN
Sbjct: 1   MSLLSSDQPRFHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNGTN 60

Query: 152 HSSPISPEDHRQ-HHQEIEVNLIITDYCMPEMTGFDLLRKIKESDSLKDIPVVIMSSENV 211
           H+SPISPE+HRQ HHQEIEVNLIITDYCMPEMTG+DLLRKIKESDSLKDIPVVIMSSENV
Sbjct: 61  HNSPISPENHRQHHHQEIEVNLIITDYCMPEMTGYDLLRKIKESDSLKDIPVVIMSSENV 120

Query: 212 PSRINRCLEEGAEEFLLKPVKLSDVNKLKPFICRGIKAKEMDFNHLKRKEMEII 265
           PSRINRCLEEGAEEFLLKPVKLSDVNKLKPFICRG KAKE+DFNHLKRKEMEII
Sbjct: 121 PSRINRCLEEGAEEFLLKPVKLSDVNKLKPFICRGTKAKEIDFNHLKRKEMEII 174

[Close]

BLAST of Cucsa.307960 vs. NCBI nr
Match: gi|643733683|gb|KDP40526.1| (hypothetical protein JCGZ_24525 [Jatropha curcas])

HSP 1 Score: 226.1 bits (575), Expect = 7.2e-56
Identity = 122/166 (73.49%), Postives = 138/166 (83.13%), Query Frame = 1


Query: 99  QPRFHVLAVDDSLVDRKLIERLLKTSSFNVTVVDSGSKALELLGLVRERNGTNHSSPISP 158
           +P+FHVLAVDDSL+DRKLIERLLKTSS++VT VDSGSKALE LGL  E    ++ + +SP
Sbjct: 6   EPQFHVLAVDDSLIDRKLIERLLKTSSYHVTAVDSGSKALEFLGLNEEEQIDSNLTSVSP 65

Query: 159 EDHRQHHQEIEVNLIITDYCMPEMTGFDLLRKIKESDSLKDIPVVIMSSENVPSRINRCL 218
                HHQ++EVNLIITDYCMP MTG+DLLRKIKES SLKDIPVVIMSSENVPSRINRCL
Sbjct: 66  PG--DHHQDVEVNLIITDYCMPGMTGYDLLRKIKESKSLKDIPVVIMSSENVPSRINRCL 125

Query: 219 EEGAEEFLLKPVKLSDVNKLKPFICRGIKAKEMDFNHLKRKEMEII 265
           EEGAEEF LKPV+LSDVNKLKP + +G KAKE D    KRK M+ I
Sbjct: 126 EEGAEEFFLKPVQLSDVNKLKPHLMKG-KAKE-DEPSNKRKGMDEI 167

[Close]

BLAST of Cucsa.307960 vs. NCBI nr
Match: gi|255544001|ref|XP_002513063.1| (PREDICTED: two-component response regulator ARR9 [Ricinus communis])

HSP 1 Score: 221.5 bits (563), Expect = 1.8e-54
Identity = 122/170 (71.76%), Postives = 136/170 (80.00%), Query Frame = 1


Query: 101 RFHVLAVDDSLVDRKLIERLLKTSSFNVTVVDSGSKALELLGLVRERNGTNH------SS 160
           +FHVLAVDDSL+DRKLIERLLKTSSF+VT VDSGSKALE LGL  E            SS
Sbjct: 8   QFHVLAVDDSLIDRKLIERLLKTSSFHVTAVDSGSKALEFLGLNEEEEEEEEEEERRDSS 67

Query: 161 PISPEDHRQHHQEIEVNLIITDYCMPEMTGFDLLRKIKESDSLKDIPVVIMSSENVPSRI 220
           PIS     +HHQ+++VNLIITDYCMP MTG+DLLRKIKES S KDIPVVIMSSENVPSRI
Sbjct: 68  PISVCPDDEHHQDLQVNLIITDYCMPGMTGYDLLRKIKESKSFKDIPVVIMSSENVPSRI 127

Query: 221 NRCLEEGAEEFLLKPVKLSDVNKLKPFICRGIKAKEMDFNHLKRKEMEII 265
           NRCLEEGAEEF LKPV+LSDVNKLKP + +G K +E + N+ KRK ME I
Sbjct: 128 NRCLEEGAEEFFLKPVQLSDVNKLKPHMMKG-KTRENEPNN-KRKGMEEI 175

[Close]

BLAST of Cucsa.307960 vs. NCBI nr
Match: gi|590569360|ref|XP_007011051.1| (Two-component response regulator ARR8 [Theobroma cacao])

HSP 1 Score: 219.2 bits (557), Expect = 8.8e-54
Identity = 117/168 (69.64%), Postives = 136/168 (80.95%), Query Frame = 1


Query: 99  QPRFHVLAVDDSLVDRKLIERLLKTSSFNVTVVDSGSKALELLGLV-RERNGTNHSSPIS 158
           + +FHVLAVDDSL+DRKLIERLLKTSS++VT VDSGSKALE LGL     +G  + SP S
Sbjct: 6   EAQFHVLAVDDSLIDRKLIERLLKTSSYHVTAVDSGSKALEFLGLNGSHEDGQRNPSPAS 65

Query: 159 PE-DHRQHHQEIEVNLIITDYCMPEMTGFDLLRKIKESDSLKDIPVVIMSSENVPSRINR 218
              D  QH Q++EVNLIITDYCMP MTG+DLLR+IK S S KDIPVVIMSSEN+PSRINR
Sbjct: 66  VSLDEDQHQQDVEVNLIITDYCMPGMTGYDLLRRIKGSSSFKDIPVVIMSSENIPSRINR 125

Query: 219 CLEEGAEEFLLKPVKLSDVNKLKPFICRGIKAKEMDFNHLKRKEMEII 265
           CLE+GAEEF LKPV+LSDVNKL+P + +G ++KEM  N  KRK ME I
Sbjct: 126 CLEDGAEEFFLKPVQLSDVNKLRPHLMKG-RSKEMQQNISKRKGMEEI 172

The following BLAST results are available for this feature:

BLAST of Cucsa.307960 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ORR4_ORYSI	2.3e-49	71.23	Two-component response regulator ORR4 OS=Oryza sativa subsp. indica GN=RR4 PE=2 ...	[more]
ORR4_ORYSJ	2.3e-49	71.23	Two-component response regulator ORR4 OS=Oryza sativa subsp. japonica GN=RR4 PE=...	[more]
ORR9_ORYSJ	8.6e-49	71.33	Two-component response regulator ORR9 OS=Oryza sativa subsp. japonica GN=RR9 PE=...	[more]
ORR9_ORYSI	8.6e-49	71.33	Two-component response regulator ORR9 OS=Oryza sativa subsp. indica GN=RR9 PE=2 ...	[more]
ORR10_ORYSI	1.1e-48	71.33	Two-component response regulator ORR10 OS=Oryza sativa subsp. indica GN=RR10 PE=...	[more]

BLAST of Cucsa.307960 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KV44_CUCSA	4.8e-91	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G623800 PE=4 SV=1	[more]
A0A067KWD7_JATCU	5.0e-56	73.49	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24525 PE=4 SV=1	[more]
B9RGB1_RICCO	1.2e-54	71.76	Two-component response regulator ARR8, putative OS=Ricinus communis GN=RCOM_1452...	[more]
A0A061FRZ9_THECC	6.2e-54	69.64	Two-component response regulator ARR8 OS=Theobroma cacao GN=TCM_045246 PE=4 SV=1	[more]
B9GWX3_POPTR	4.0e-53	71.43	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s19710g PE=4 SV=2	[more]

BLAST of Cucsa.307960 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G57040.1	7.0e-49	67.12	response regulator 9	[more]
AT2G41310.1	2.6e-48	63.52	response regulator 3	[more]
AT1G74890.1	9.7e-43	55.62	response regulator 15	[more]
AT1G59940.1	1.6e-40	57.33	response regulator 3	[more]
AT3G48100.1	4.5e-40	55.90	response regulator 5	[more]

BLAST of Cucsa.307960 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449449356\|ref\|XP_004142431.1\|	6.9e-91	100.00	PREDICTED: two-component response regulator ARR9-like [Cucumis sativus]	[more]
gi\|659092213\|ref\|XP_008446956.1\|	1.0e-86	95.98	PREDICTED: two-component response regulator ARR9-like isoform X1 [Cucumis melo]	[more]
gi\|643733683\|gb\|KDP40526.1\|	7.2e-56	73.49	hypothetical protein JCGZ_24525 [Jatropha curcas]	[more]
gi\|255544001\|ref\|XP_002513063.1\|	1.8e-54	71.76	PREDICTED: two-component response regulator ARR9 [Ricinus communis]	[more]
gi\|590569360\|ref\|XP_007011051.1\|	8.8e-54	69.64	Two-component response regulator ARR8 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001789	Sig_transdc_resp-reg_receiver
IPR011006	CheY-like_superfamily

Vocabulary: **Biological Process**
Term	Definition
GO:0000160	phosphorelay signal transduction system

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000160	phosphorelay signal transduction system
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.307960.1	Cucsa.307960.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001789	Signal transduction response regulator, receiver domain	PFAM	PF00072	Response_reg	coord: 104..235 score: 1.3
IPR001789	Signal transduction response regulator, receiver domain	SMART	SM00448	REC_2	coord: 102..239 score: 7.2
IPR001789	Signal transduction response regulator, receiver domain	PROFILE	PS50110	RESPONSE_REGULATORY	coord: 103..243 score: 33
IPR011006	CheY-like superfamily	unknown	SSF52172	CheY-like	coord: 101..235 score: 1.07
None	No IPR available	GENE3D	G3DSA:3.40.50.2300		coord: 99..236 score: 2.5
None	No IPR available	PANTHER	PTHR26402	RESPONSE REGULATOR OF TWO-COMPONENT SYSTEM	coord: 166..264 score: 1.5E-89coord: 102..141 score: 1.5
None	No IPR available	PANTHER	PTHR26402:SF574	SUBFAMILY NOT NAMED	coord: 102..141 score: 1.5E-89coord: 166..264 score: 1.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.307960	Cla009939	Watermelon (97103) v1	cgywmB560
Cucsa.307960	Csa5G623800	Cucumber (Chinese Long) v2	cgycuB441
Cucsa.307960	MELO3C012470	Melon (DHL92) v3.5.1	cgymeB508
Cucsa.307960	ClCG05G026780	Watermelon (Charleston Gray)	cgywcgB531
Cucsa.307960	CSPI05G27580	Wild cucumber (PI 183967)	cgycpiB464
Cucsa.307960	CmaCh04G013300	Cucurbita maxima (Rimu)	cgycmaB0850
Cucsa.307960	CmoCh04G014040	Cucurbita moschata (Rifu)	cgycmoB0848
Cucsa.307960	Lsi04G000290	Bottle gourd (USVL1VR-Ls)	cgylsiB497
Cucsa.307960	Cp4.1LG01g15020	Cucurbita pepo (Zucchini)	cgycpeB0806
Cucsa.307960	MELO3C012470.2	Melon (DHL92) v3.6.1	cgymedB508
Cucsa.307960	CsaV3_5G036740	Cucumber (Chinese Long) v3	cgycucB479
Cucsa.307960	Cla97C05G109060	Watermelon (97103) v2	cgywmbB534
Cucsa.307960	Bhi07G001036	Wax gourd	cgywgoB619
Cucsa.307960	Carg01992	Silver-seed gourd	carcgyB0969

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.307960	Cucurbita maxima (Rimu)	cgycmaB0849
Cucsa.307960	Cucurbita moschata (Rifu)	cgycmoB0847
Cucsa.307960	Cucurbita pepo (Zucchini)	cgycpeB0804
Cucsa.307960	Silver-seed gourd	carcgyB0816