Carg01992 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg01992
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Two-component response regulator
Location	Cucurbita_argyrosperma_scaffold_003 : 1568559 .. 1569115 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCTTCTTCTTCTTCTTCTTCTTCCAATTCCCATGGCCCTTGTCTCTTCTAATGCTCAGTTCCATGTCTTGGCTGTTGATGACAGCCTTGTTGACAGGAAGCTGATTGAAAGGCTGCTCAAAACTTCCTCCTTCAATGGTACTCTGCCATTGAACCTTCTTCTCTCTCTTTCTCACTCTCTCTAGGGTTCTAAGAATGGCTTGAATTTAGGCTCTAAACAGTTGGTTTGGTTTTTTTCTTTTTACAGTTACGGCTGTGGATTCTGGAAGCAAGGCTTTGGAGCTTCTGGGTTTGGTTAGAGAGAGAAATGGAAGCATCCATTCTCCTTTTTCCCCTGAAAATCATAATCATCAACATCATCAAGTTAAGGATTTCCAATTTGGATGTTTGTTTGTTTGTTGTTCTTTTGGGCATTGTTTTGATTTGTTTTGCTTTGATTGCAGGAGATTGAAGTTAATCTCATCATTACAGATTACTGTATGCCAGAAATGACAGGCTATGATCTTCTAAGAAAGATCAAGGCAAGTTTCTTCTTCTTTTCAAAACATAAGGCTTAG

mRNA sequence

TTCTTCTTCTTCTTCTTCTTCTTCCAATTCCCATGGCCCTTGTCTCTTCTAATGCTCAGTTCCATGTCTTGGCTGTTGATGACAGCCTTGTTGACAGGAAGCTGATTGAAAGGCTGCTCAAAACTTCCTCCTTCAATGTTACGGCTGTGGATTCTGGAAGCAAGGCTTTGGAGCTTCTGGGTTTGGTTAGAGAGAGAAATGGAAGCATCCATTCTCCTTTTTCCCCTGAAAATCATAATCATCAACATCATCAAGAGATTGAAGTTAATCTCATCATTACAGATTACTGTATGCCAGAAATGACAGGCTATGATCTTCTAAGAAAGATCAAGGCAAGTTTCTTCTTCTTTTCAAAACATAAGGCTTAG

Coding sequence (CDS)

ATGGCCCTTGTCTCTTCTAATGCTCAGTTCCATGTCTTGGCTGTTGATGACAGCCTTGTTGACAGGAAGCTGATTGAAAGGCTGCTCAAAACTTCCTCCTTCAATGTTACGGCTGTGGATTCTGGAAGCAAGGCTTTGGAGCTTCTGGGTTTGGTTAGAGAGAGAAATGGAAGCATCCATTCTCCTTTTTCCCCTGAAAATCATAATCATCAACATCATCAAGAGATTGAAGTTAATCTCATCATTACAGATTACTGTATGCCAGAAATGACAGGCTATGATCTTCTAAGAAAGATCAAGGCAAGTTTCTTCTTCTTTTCAAAACATAAGGCTTAG

Protein sequence

MALVSSNAQFHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNGSIHSPFSPENHNHQHHQEIEVNLIITDYCMPEMTGYDLLRKIKASFFFFSKHKA

Homology

[Close]

BLAST of Carg01992 vs. NCBI nr
Match: XP_022956694.1 (LOW QUALITY PROTEIN: two-component response regulator ORR11-like [Cucurbita moschata])

HSP 1 Score: 191.0 bits (484), Expect = 2.1e-45
Identity = 98/102 (96.08%), Postives = 100/102 (98.04%), Query Frame = 0


Query: 1   MALVSSNAQFHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNGSIH 60
           MALVSSNAQFHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNGSIH
Sbjct: 52  MALVSSNAQFHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNGSIH 111

Query: 61  SPFSPENHNHQHHQEIEVNLIITDYCMPEMTGYDLLRKIKAS 103
           SP+SPENH+HQ HQEIEVNLIITDYCMPEMTGYDLLRKIK S
Sbjct: 112 SPYSPENHHHQ-HQEIEVNLIITDYCMPEMTGYDLLRKIKES 152

[Close]

BLAST of Carg01992 vs. NCBI nr
Match: XP_023526911.1 (two-component response regulator ORR4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 184.5 bits (467), Expect = 2.0e-43
Identity = 95/102 (93.14%), Postives = 95/102 (93.14%), Query Frame = 0


Query: 1   MALVSSNAQFHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNGSIH 60
           MALVSSNAQFHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNGSIH
Sbjct: 1   MALVSSNAQFHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNGSIH 60

Query: 61  SPFSPENHNHQHHQEIEVNLIITDYCMPEMTGYDLLRKIKAS 103
           SPF PENH     QEIEVNLIITDYCMPEMTGYDLLRKIK S
Sbjct: 61  SPFPPENHXXXXXQEIEVNLIITDYCMPEMTGYDLLRKIKES 102

[Close]

BLAST of Carg01992 vs. NCBI nr
Match: XP_008446956.1 (PREDICTED: two-component response regulator ORR9-like [Cucumis melo])

HSP 1 Score: 171.4 bits (433), Expect = 1.7e-39
Identity = 90/104 (86.54%), Postives = 95/104 (91.35%), Query Frame = 0


Query: 1   MALVSSN-AQFHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNGSI 60
           M+L+SS+  +FHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNG+ 
Sbjct: 1   MSLLSSDQPRFHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNGTN 60

Query: 61  H-SPFSPENHNHQHHQEIEVNLIITDYCMPEMTGYDLLRKIKAS 103
           H SP SPENH   HHQEIEVNLIITDYCMPEMTGYDLLRKIK S
Sbjct: 61  HNSPISPENHRQHHHQEIEVNLIITDYCMPEMTGYDLLRKIKES 104

[Close]

BLAST of Carg01992 vs. NCBI nr
Match: XP_004142431.1 (PREDICTED: two-component response regulator ARR9-like [Cucumis sativus] >KGN52317.1 hypothetical protein Csa_5G623800 [Cucumis sativus])

HSP 1 Score: 163.7 bits (413), Expect = 3.6e-37
Identity = 88/104 (84.62%), Postives = 95/104 (91.35%), Query Frame = 0


Query: 1   MALVSSN-AQFHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNGSI 60
           M+L+SS+  +FHVLAVDDSLVDRKLIERLLKTSSFNVT VDSGSKALELLGLVRERNG+ 
Sbjct: 1   MSLLSSDQPRFHVLAVDDSLVDRKLIERLLKTSSFNVTVVDSGSKALELLGLVRERNGTN 60

Query: 61  H-SPFSPENHNHQHHQEIEVNLIITDYCMPEMTGYDLLRKIKAS 103
           H SP SPE+H  QHHQEIEVNLIITDYCMPEMTG+DLLRKIK S
Sbjct: 61  HSSPISPEDH-RQHHQEIEVNLIITDYCMPEMTGFDLLRKIKES 103

[Close]

BLAST of Carg01992 vs. NCBI nr
Match: XP_022139151.1 (two-component response regulator ORR4-like [Momordica charantia])

HSP 1 Score: 157.1 bits (396), Expect = 3.4e-35
Identity = 85/104 (81.73%), Postives = 90/104 (86.54%), Query Frame = 0


Query: 2   ALVSSNAQFHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNG---S 61
           A+VS+ AQFHVLAVDDSL+DRKLIERLLKTSSFNVTAVDSGSKALELLGLVR+RNG   S
Sbjct: 3   AVVSAEAQFHVLAVDDSLIDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRDRNGGGSS 62

Query: 62  IHSPFSPENHNHQHHQEIEVNLIITDYCMPEMTGYDLLRKIKAS 103
           IHS  SP       HQEIEVN+IITDYCMPEMTGYDLLRKIK S
Sbjct: 63  IHSSVSP------LHQEIEVNMIITDYCMPEMTGYDLLRKIKES 100

[Close]

BLAST of Carg01992 vs. TAIR10
Match: AT3G57040.1 (response regulator 9)

HSP 1 Score: 118.2 bits (295), Expect = 3.1e-27
Identity = 64/102 (62.75%), Postives = 76/102 (74.51%), Query Frame = 0


Query: 4   VSSNAQFHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNGSIHSPF 63
           +++ +QFHVLAVDDSL DRKLIERLL+ SS  VT VDSGSKALE LGL +  + +  + F
Sbjct: 3   MAAESQFHVLAVDDSLFDRKLIERLLQKSSCQVTTVDSGSKALEFLGLRQSTDSNDPNAF 62

Query: 64  SPENHNHQHHQEIEVNLIITDYCMPEMTGYDLLRKIKASFFF 106
           S    N   HQ +EVNLIITDYCMP MTGYDLL+K+K S  F
Sbjct: 63  SKAPVN---HQVVEVNLIITDYCMPGMTGYDLLKKVKESSAF 101

[Close]

BLAST of Carg01992 vs. TAIR10
Match: AT2G41310.1 (response regulator 3)

HSP 1 Score: 117.1 bits (292), Expect = 7.0e-27
Identity = 64/105 (60.95%), Postives = 76/105 (72.38%), Query Frame = 0


Query: 3   LVSSNAQFHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNGSIHSP 62
           ++ + ++FHVLAVDDSL DRK+IERLL+ SS  VT VDSGSKALE LGL  + N      
Sbjct: 2   VMETESKFHVLAVDDSLFDRKMIERLLQKSSCQVTTVDSGSKALEFLGLRVDDNDPNALS 61

Query: 63  FSPENHNHQHHQEIEVNLIITDYCMPEMTGYDLLRKIKASFFFFS 108
            SP     Q HQE+E+NLIITDYCMP MTGYDLL+K+K S  F S
Sbjct: 62  TSP-----QIHQEVEINLIITDYCMPGMTGYDLLKKVKESAAFRS 101

[Close]

BLAST of Carg01992 vs. TAIR10
Match: AT3G48100.1 (response regulator 5)

HSP 1 Score: 95.1 bits (235), Expect = 2.8e-20
Identity = 52/102 (50.98%), Postives = 68/102 (66.67%), Query Frame = 0


Query: 4   VSSNAQFHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNGSIHSPF 63
           ++S    HVLAVDDS+VDRK IERLL+ SS  VT VDS ++AL+ LGL  E N S+    
Sbjct: 19  LASPKLLHVLAVDDSMVDRKFIERLLRVSSCKVTVVDSATRALQYLGLDGENNSSV---- 78

Query: 64  SPENHNHQHHQEIEVNLIITDYCMPEMTGYDLLRKIKASFFF 106
                     +++++NLI+TDY MP MTGY+LL+KIK S  F
Sbjct: 79  --------GFEDLKINLIMTDYSMPGMTGYELLKKIKESSAF 108

[Close]

BLAST of Carg01992 vs. TAIR10
Match: AT1G10470.1 (response regulator 4)

HSP 1 Score: 93.6 bits (231), Expect = 8.3e-20
Identity = 53/97 (54.64%), Postives = 65/97 (67.01%), Query Frame = 0


Query: 9   QFHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNGSIHSPFSPENH 68
           + HVLAVDDSLVDR +IERLL+ +S  VTAVDSG +ALE LGL  E+  +          
Sbjct: 33  EVHVLAVDDSLVDRIVIERLLRITSCKVTAVDSGWRALEFLGLDNEKASA---------- 92

Query: 69  NHQHHQEIEVNLIITDYCMPEMTGYDLLRKIKASFFF 106
                  ++V+LIITDYCMP MTGY+LL+KIK S  F
Sbjct: 93  ---EFDRLKVDLIITDYCMPGMTGYELLKKIKESSNF 116

[Close]

BLAST of Carg01992 vs. TAIR10
Match: AT1G74890.1 (response regulator 15)

HSP 1 Score: 92.8 bits (229), Expect = 1.4e-19
Identity = 52/98 (53.06%), Postives = 69/98 (70.41%), Query Frame = 0


Query: 5   SSNAQFHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNGSIHSPFS 64
           SS+ + HVLAVDDS VDRK+IERLLK S+  VT V+SG++AL+ LGL  + NGS      
Sbjct: 13  SSSPELHVLAVDDSFVDRKVIERLLKISACKVTTVESGTRALQYLGLDGD-NGS------ 72

Query: 65  PENHNHQHHQEIEVNLIITDYCMPEMTGYDLLRKIKAS 103
                    ++++VNLI+TDY MP +TGY+LL+KIK S
Sbjct: 73  ------SGLKDLKVNLIVTDYSMPGLTGYELLKKIKES 97

[Close]

BLAST of Carg01992 vs. Swiss-Prot
Match: sp|Q4GZK7|ORR4_ORYSI (Two-component response regulator ORR4 OS=Oryza sativa subsp. indica OX=39946 GN=RR4 PE=2 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 5.1e-27
Identity = 65/102 (63.73%), Postives = 76/102 (74.51%), Query Frame = 0


Query: 1   MALVSSNAQFHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNGSIH 60
           M +V + ++FHVLAVDDSL+DRKLIE LLK SS+ VT VDSGSKALELLGL  E + S  
Sbjct: 1   MTVVDAESRFHVLAVDDSLIDRKLIEMLLKNSSYQVTTVDSGSKALELLGLRDEGDDS-- 60

Query: 61  SPFSPENHNHQHHQEIEVNLIITDYCMPEMTGYDLLRKIKAS 103
              S        HQEI+VNLIITDYCMP MTGYDLL+++K S
Sbjct: 61  --SSXXXXXXPDHQEIDVNLIITDYCMPGMTGYDLLKRVKGS 98

[Close]

BLAST of Carg01992 vs. Swiss-Prot
Match: sp|Q942A1|ORR4_ORYSJ (Two-component response regulator ORR4 OS=Oryza sativa subsp. japonica OX=39947 GN=RR4 PE=2 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 5.1e-27
Identity = 65/102 (63.73%), Postives = 76/102 (74.51%), Query Frame = 0


Query: 1   MALVSSNAQFHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNGSIH 60
           M +V + ++FHVLAVDDSL+DRKLIE LLK SS+ VT VDSGSKALELLGL  E + S  
Sbjct: 1   MTVVDAESRFHVLAVDDSLIDRKLIEMLLKNSSYQVTTVDSGSKALELLGLRDEGDDS-- 60

Query: 61  SPFSPENHNHQHHQEIEVNLIITDYCMPEMTGYDLLRKIKAS 103
              S        HQEI+VNLIITDYCMP MTGYDLL+++K S
Sbjct: 61  --SSXXXXXXPDHQEIDVNLIITDYCMPGMTGYDLLKRVKGS 98

[Close]

BLAST of Carg01992 vs. Swiss-Prot
Match: sp|Q4GZK2|ORR9_ORYSI (Two-component response regulator ORR9 OS=Oryza sativa subsp. indica OX=39946 GN=RR9 PE=2 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 4.3e-26
Identity = 67/101 (66.34%), Postives = 74/101 (73.27%), Query Frame = 0


Query: 4   VSSNAQFHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNGSIHSPF 63
           V+  A FHVLAVDDSL DRKLIERLLKTSSF VT VDSGSKALE LGL    +    SP 
Sbjct: 3   VAIEAPFHVLAVDDSLPDRKLIERLLKTSSFQVTTVDSGSKALEFLGLHDHED----SPI 62

Query: 64  SPENHNHQHHQEIEVNLIITDYCMPEMTGYDLLRKIKASFF 105
           S ++      QE+ VNLIITDYCMP MTGYDLL+KIK S +
Sbjct: 63  STQS----DQQEVAVNLIITDYCMPGMTGYDLLKKIKESSY 95

[Close]

BLAST of Carg01992 vs. Swiss-Prot
Match: sp|Q2RAP3|ORR9_ORYSJ (Two-component response regulator ORR9 OS=Oryza sativa subsp. japonica OX=39947 GN=RR9 PE=2 SV=2)

HSP 1 Score: 118.6 bits (296), Expect = 4.3e-26
Identity = 67/101 (66.34%), Postives = 74/101 (73.27%), Query Frame = 0


Query: 4   VSSNAQFHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNGSIHSPF 63
           V+  A FHVLAVDDSL DRKLIERLLKTSSF VT VDSGSKALE LGL    +    SP 
Sbjct: 3   VAIEAPFHVLAVDDSLPDRKLIERLLKTSSFQVTTVDSGSKALEFLGLHDHED----SPI 62

Query: 64  SPENHNHQHHQEIEVNLIITDYCMPEMTGYDLLRKIKASFF 105
           S ++      QE+ VNLIITDYCMP MTGYDLL+KIK S +
Sbjct: 63  STQS----DQQEVAVNLIITDYCMPGMTGYDLLKKIKESSY 95

[Close]

BLAST of Carg01992 vs. Swiss-Prot
Match: sp|O80366|ARR9_ARATH (Two-component response regulator ARR9 OS=Arabidopsis thaliana OX=3702 GN=ARR9 PE=1 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 5.7e-26
Identity = 64/102 (62.75%), Postives = 76/102 (74.51%), Query Frame = 0


Query: 4   VSSNAQFHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNGSIHSPF 63
           +++ +QFHVLAVDDSL DRKLIERLL+ SS  VT VDSGSKALE LGL +  + +  + F
Sbjct: 3   MAAESQFHVLAVDDSLFDRKLIERLLQKSSCQVTTVDSGSKALEFLGLRQSTDSNDPNAF 62

Query: 64  SPENHNHQHHQEIEVNLIITDYCMPEMTGYDLLRKIKASFFF 106
           S    N   HQ +EVNLIITDYCMP MTGYDLL+K+K S  F
Sbjct: 63  SKAPVN---HQVVEVNLIITDYCMPGMTGYDLLKKVKESSAF 101

[Close]

BLAST of Carg01992 vs. TrEMBL
Match: tr|A0A1S3BH64|A0A1S3BH64_CUCME (two-component response regulator ORR9-like OS=Cucumis melo OX=3656 GN=LOC103489512 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.1e-39
Identity = 90/104 (86.54%), Postives = 95/104 (91.35%), Query Frame = 0


Query: 1   MALVSSN-AQFHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNGSI 60
           M+L+SS+  +FHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNG+ 
Sbjct: 1   MSLLSSDQPRFHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNGTN 60

Query: 61  H-SPFSPENHNHQHHQEIEVNLIITDYCMPEMTGYDLLRKIKAS 103
           H SP SPENH   HHQEIEVNLIITDYCMPEMTGYDLLRKIK S
Sbjct: 61  HNSPISPENHRQHHHQEIEVNLIITDYCMPEMTGYDLLRKIKES 104

[Close]

BLAST of Carg01992 vs. TrEMBL
Match: tr|A0A0A0KV44|A0A0A0KV44_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G623800 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 2.4e-37
Identity = 88/104 (84.62%), Postives = 95/104 (91.35%), Query Frame = 0


Query: 1   MALVSSN-AQFHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNGSI 60
           M+L+SS+  +FHVLAVDDSLVDRKLIERLLKTSSFNVT VDSGSKALELLGLVRERNG+ 
Sbjct: 1   MSLLSSDQPRFHVLAVDDSLVDRKLIERLLKTSSFNVTVVDSGSKALELLGLVRERNGTN 60

Query: 61  H-SPFSPENHNHQHHQEIEVNLIITDYCMPEMTGYDLLRKIKAS 103
           H SP SPE+H  QHHQEIEVNLIITDYCMPEMTG+DLLRKIK S
Sbjct: 61  HSSPISPEDH-RQHHQEIEVNLIITDYCMPEMTGFDLLRKIKES 103

[Close]

BLAST of Carg01992 vs. TrEMBL
Match: tr|A0A1S3T7F9|A0A1S3T7F9_VIGRR (two-component response regulator ARR9 OS=Vigna radiata var. radiata OX=3916 GN=LOC106752532 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 4.1e-29
Identity = 68/102 (66.67%), Postives = 81/102 (79.41%), Query Frame = 0


Query: 1   MALVSSNAQFHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNGSIH 60
           M + ++ +QFHVLAVDDS++DRKLIERLLKTSS+ VT VDSGSKALE LGL    N +  
Sbjct: 1   MGMAAAESQFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLRENENTNPS 60

Query: 61  SPFSPENHNHQHHQEIEVNLIITDYCMPEMTGYDLLRKIKAS 103
           +P    NHN  +HQE+EVNL+ITDYCMP MTGYDLL+KIK S
Sbjct: 61  TPSVSPNHN--NHQEVEVNLVITDYCMPGMTGYDLLKKIKES 100

[Close]

BLAST of Carg01992 vs. TrEMBL
Match: tr|A0A2P4HC21|A0A2P4HC21_QUESU (Two-component response regulator arr9 OS=Quercus suber OX=58331 GN=CFP56_77842 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 9.0e-29
Identity = 68/103 (66.02%), Postives = 84/103 (81.55%), Query Frame = 0


Query: 4   VSSNAQFHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNGSIHSPF 63
           +++ AQ+HVLAVDDSL+DRKLIERLLKTSS++VTAVDSGSKALE LGL+ + +   +   
Sbjct: 3   MAAEAQYHVLAVDDSLLDRKLIERLLKTSSYHVTAVDSGSKALEFLGLLEDEH---NDAL 62

Query: 64  SPENHNHQHHQEIEVNLIITDYCMPEMTGYDLLRKIKASFFFF 107
           +P    + HHQ+++VNLIITDYCMP MTGYDLLRKIK SF  F
Sbjct: 63  APSVSLNDHHQDVDVNLIITDYCMPGMTGYDLLRKIKVSFLAF 102

[Close]

BLAST of Carg01992 vs. TrEMBL
Match: tr|A0A0A0LCF4|A0A0A0LCF4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G822100 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.5e-28
Identity = 69/105 (65.71%), Postives = 85/105 (80.95%), Query Frame = 0


Query: 3   LVSSNAQFHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRER-----NG 62
           ++++++QFHVLAVDDSL+DRKLIERLLKTSS+ VT VDSGSKALE LGL++E        
Sbjct: 2   VMAADSQFHVLAVDDSLIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLIQEHQPTNFKS 61

Query: 63  SIHSPFSPENHNHQHHQEIEVNLIITDYCMPEMTGYDLLRKIKAS 103
           S +S FS  N+   HHQE+EVNLIITDYCMP MTG+DLL+K+K S
Sbjct: 62  SSNSSFSSPNN---HHQEVEVNLIITDYCMPGMTGFDLLKKVKES 103

The following BLAST results are available for this feature:

BLAST of Carg01992 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022956694.1	2.1e-45	96.08	LOW QUALITY PROTEIN: two-component response regulator ORR11-like [Cucurbita mosc...	[more]
XP_023526911.1	2.0e-43	93.14	two-component response regulator ORR4-like [Cucurbita pepo subsp. pepo]	[more]
XP_008446956.1	1.7e-39	86.54	PREDICTED: two-component response regulator ORR9-like [Cucumis melo]	[more]
XP_004142431.1	3.6e-37	84.62	PREDICTED: two-component response regulator ARR9-like [Cucumis sativus] >KGN5231...	[more]
XP_022139151.1	3.4e-35	81.73	two-component response regulator ORR4-like [Momordica charantia]	[more]

BLAST of Carg01992 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G57040.1	3.1e-27	62.75	response regulator 9	[more]
AT2G41310.1	7.0e-27	60.95	response regulator 3	[more]
AT3G48100.1	2.8e-20	50.98	response regulator 5	[more]
AT1G10470.1	8.3e-20	54.64	response regulator 4	[more]
AT1G74890.1	1.4e-19	53.06	response regulator 15	[more]

BLAST of Carg01992 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q4GZK7\|ORR4_ORYSI	5.1e-27	63.73	Two-component response regulator ORR4 OS=Oryza sativa subsp. indica OX=39946 GN=...	[more]
sp\|Q942A1\|ORR4_ORYSJ	5.1e-27	63.73	Two-component response regulator ORR4 OS=Oryza sativa subsp. japonica OX=39947 G...	[more]
sp\|Q4GZK2\|ORR9_ORYSI	4.3e-26	66.34	Two-component response regulator ORR9 OS=Oryza sativa subsp. indica OX=39946 GN=...	[more]
sp\|Q2RAP3\|ORR9_ORYSJ	4.3e-26	66.34	Two-component response regulator ORR9 OS=Oryza sativa subsp. japonica OX=39947 G...	[more]
sp\|O80366\|ARR9_ARATH	5.7e-26	62.75	Two-component response regulator ARR9 OS=Arabidopsis thaliana OX=3702 GN=ARR9 PE...	[more]

BLAST of Carg01992 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BH64\|A0A1S3BH64_CUCME	1.1e-39	86.54	two-component response regulator ORR9-like OS=Cucumis melo OX=3656 GN=LOC1034895...	[more]
tr\|A0A0A0KV44\|A0A0A0KV44_CUCSA	2.4e-37	84.62	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G623800 PE=4 SV=1	[more]
tr\|A0A1S3T7F9\|A0A1S3T7F9_VIGRR	4.1e-29	66.67	two-component response regulator ARR9 OS=Vigna radiata var. radiata OX=3916 GN=L...	[more]
tr\|A0A2P4HC21\|A0A2P4HC21_QUESU	9.0e-29	66.02	Two-component response regulator arr9 OS=Quercus suber OX=58331 GN=CFP56_77842 P...	[more]
tr\|A0A0A0LCF4\|A0A0A0LCF4_CUCSA	1.5e-28	65.71	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G822100 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0000160	phosphorelay signal transduction system

Vocabulary: **INTERPRO**
Term	Definition
IPR011006	CheY-like_superfamily
IPR001789	Sig_transdc_resp-reg_receiver

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000160	phosphorelay signal transduction system
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg01992-RA	Carg01992-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001789	Signal transduction response regulator, receiver domain	PFAM	PF00072	Response_reg	coord: 12..101 e-value: 8.0E-10 score: 38.8
IPR001789	Signal transduction response regulator, receiver domain	PROSITE	PS50110	RESPONSE_REGULATORY	coord: 11..111 score: 23.431
IPR001789	Signal transduction response regulator, receiver domain	CDD	cd00156	REC	coord: 13..103 e-value: 1.69179E-14 score: 63.7489
None	No IPR available	GENE3D	G3DSA:3.40.50.2300		coord: 4..104 e-value: 3.5E-18 score: 67.5
None	No IPR available	PANTHER	PTHR43874:SF5	SUBFAMILY NOT NAMED	coord: 2..102
None	No IPR available	PANTHER	PTHR43874	FAMILY NOT NAMED	coord: 2..102
IPR011006	CheY-like superfamily	SUPERFAMILY	SSF52172	CheY-like	coord: 10..103

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg01992	MELO3C012470	Melon (DHL92) v3.5.1	carmeB0834
Carg01992	Cucsa.307960	Cucumber (Gy14) v1	carcgyB0969
Carg01992	CmaCh04G013300	Cucurbita maxima (Rimu)	carcmaB1170
Carg01992	CmoCh04G014040	Cucurbita moschata (Rifu)	carcmoB1138
Carg01992	Cp4.1LG01g15020	Cucurbita pepo (Zucchini)	carcpeB1177
Carg01992	CsGy5G026990	Cucumber (Gy14) v2	carcgybB0831
Carg01992	MELO3C012470.2	Melon (DHL92) v3.6.1	carmedB0846
Carg01992	CsaV3_5G036740	Cucumber (Chinese Long) v3	carcucB0881

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg01992	Watermelon (97103) v2	carwmbB0876
Carg01992	Wax gourd	carwgoB0984
Carg01992	Silver-seed gourd	carcarB591
Carg01992	Cucurbita maxima (Rimu)	carcmaB1167
Carg01992	Cucurbita moschata (Rifu)	carcmoB1135
Carg01992	Cucurbita pepo (Zucchini)	carcpeB1169
Carg01992	Wild cucumber (PI 183967)	carcpiB0877
Carg01992	Cucumber (Chinese Long) v2	carcuB0857
Carg01992	Bottle gourd (USVL1VR-Ls)	carlsiB767
Carg01992	Watermelon (Charleston Gray)	carwcgB0814
Carg01992	Watermelon (97103) v1	carwmB0840