Lsi04G000290 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi04G000290
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Two-component response regulator
Location	chr04 : 449084 .. 451127 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGAAAATAAATTTTTTTAAAAAAAAGGAAAAGAAAAGAAAAAGAAGAAATGAAAACAAAGCAGGTTGTTGTTGGTTCTTGTTTGGTTGTAGTTGAATTGAAAGAAATGAAAAGATCGTGGGGAGATTGTGTAACAAAATCTGTGGGATCTTCCTTTCCAAACTGTCAAAATTTTTGTAAGGATTTCGCCATATCCCAATATACGCCATGCCTTCTTTCTTTTTCCCCATTTATAAACCCTTTCTCATTCTTCTTCTTCCCACCAAAATTCCCTTTCTTCTTCTTCCTTTGATTTCATCGATTTCCCATGGCTCTTCTCTCTTCTGAGCCTCCATTTCATGTCTTGGCTGTTGATGACAGCCTTGTTGATAGGAAGCTCATTGAAAGGCTCCTCAAAACTTCCTCCTTCAATGGTACTCTGCTACTCAACCTTCTCTTTCTCTTTTTTTCTTAACTTCTGCTGTTCAGAATATGAATTTTGATGTTGCCAATGGTTTTAACTTTTTGGATTGACTCGTAGTTTTAATATAGAATATTGCGTTTTCTCCCACTAGTCGCTTGTTAGATCTTGCGCTAATTCTCGACCTCACGAGATGTTGGCTAAGTTTTCGGTTAAGTTGACTGATGATTTAATATGATATTGGATGAACTACTCTAAAATGTTTATGTAATTTTAAGGGCTTGTTTGGAATCACTTCCCAAATTTAAAACTCTTGAGGAAATAATAATCCTTAAAAAAAAAAAAAAAAAAAAGCATTGTAAATGTTAGAAAAGAGTTTTTAAACATTCAAGGCTCTGTTTGGAATGATTTTTGAATTTTAAGTGTTAGAAAAGTGTTTTTAAGCACTTATGCTCTAATCTATATATATAATCTATGCTTTTGGTTGGGTTGAGTGATAATTGATTTAACAAGTGGGTTGGTTATTTTCACAGTTACTGCTGTGGATTCTGGAAGCAAAGCTTTGGAGCTTCTGGGTTTGGTTAGAGAAAGAAATGGAAGCAACCATTCTCCTATTTCCCCTGAAAATAATAATAATAATAATCATCATCATCATCACCATCAAGTAAGTTAACAAGCACCACCAAGCTTAAGCTTAATTTGGATGTTTGTTTTGTTCTTTTGAGGCATTGTTTGATTAGTTTAACTTTGATATTGTAGGAGATTGAAGTTAATCTCATCATTACCGATTACTGCATGCCAGAAATGACAGGCTATGATCTTCTCAGAAAGATCAAGGCAAGTTTCTTCTTCTTCTTTTCAATACATAGGCTTAGTTTTCTTGGTGGGTTTACATTTTCCAAGCAATCTTTTATTCTCTCTCCTTCCAAACAGAAAAATCTGAAAAGAAAAATTCCATCTGGTTTTGCAGGAATCTGACTCACTTAAAGACATTCCTGTTGTGATTATGTCCTCTGAGAATGTTCCATCAAGAATCAACAGGTCAGGGAAACAGCTAGAACAAGAACCATTTTCTTTCAAGCAAATCAAAATCTGAAATGATAAACCAGAAAATTCATGTGAATCTGAATGGGGTTGTTTTTTTTTTTTTTTTTTTTTTTTATCAGATGTTTGGAAGAAGGAGCTGAGGAGTTTTTGCTTAAACCAGTGAAATTATCTGATGTCAATAAGCTTAAGCCTTTCATATGTAGAGGAAAAGCCAAGGAGATGGATTTCAACAATCTGAAGAGAAAGGAAATGGAAAAGAGCCAATCATCTGAGAGAACAAGAACAAAATACAATGAGCTTTTCTGAACTTTTGGGGATGACCATTATTACCAGATTTTTTAGAGTTAAATGACCATTATTATGTACTTTCTAATGTTACAAGAGTGACAGTCATTTTGAAATTTGTCTACTTGTACAAAGTTGATGAAAATTCAGATTTTTAGGTTTAGAAATCTCATTATTTTGTAGTTTAGACATGGTGAACTCATGATTTGATCTCTACCAAACAAACAAAATAAAGGCATACAACTTTATTTTTCTTTCCATTTTCCAATTTTGGCTTTGAGCCACTAATAAGATTGCTGAATGAATTTGGTC

mRNA sequence

AGGAAAATAAATTTTTTTAAAAAAAAGGAAAAGAAAAGAAAAAGAAGAAATGAAAACAAAGCAGGTTGTTGTTGGTTCTTGTTTGGTTGTAGTTGAATTGAAAGAAATGAAAAGATCGTGGGGAGATTGTGTAACAAAATCTGTGGGATCTTCCTTTCCAAACTGTCAAAATTTTTGTAAGGATTTCGCCATATCCCAATATACGCCATGCCTTCTTTCTTTTTCCCCATTTATAAACCCTTTCTCATTCTTCTTCTTCCCACCAAAATTCCCTTTCTTCTTCTTCCTTTGATTTCATCGATTTCCCATGGCTCTTCTCTCTTCTGAGCCTCCATTTCATGTCTTGGCTGTTGATGACAGCCTTGTTGATAGGAAGCTCATTGAAAGGCTCCTCAAAACTTCCTCCTTCAATGTTACTGCTGTGGATTCTGGAAGCAAAGCTTTGGAGCTTCTGGGTTTGGTTAGAGAAAGAAATGGAAGCAACCATTCTCCTATTTCCCCTGAAAATAATAATAATAATAATCATCATCATCATCACCATCAAGAATCTGACTCACTTAAAGACATTCCTGTTGTGATTATGTCCTCTGAGAATGTTCCATCAAGAATCAACAGATGTTTGGAAGAAGGAGCTGAGGAGTTTTTGCTTAAACCAGTGAAATTATCTGATGTCAATAAGCTTAAGCCTTTCATATGTAGAGGAAAAGCCAAGGAGATGGATTTCAACAATCTGAAGAGAAAGGAAATGGAAAAGAGCCAATCATCTGAGAGAACAAGAACAAAATACAATGAGCTTTTCTGAACTTTTGGGGATGACCATTATTACCAGATTTTTTAGAGTTAAATGACCATTATTATGTACTTTCTAATGTTACAAGAGTGACAGTCATTTTGAAATTTGTCTACTTGTACAAAGTTGATGAAAATTCAGATTTTTAGGTTTAGAAATCTCATTATTTTGTAGTTTAGACATGGTGAACTCATGATTTGATCTCTACCAAACAAACAAAATAAAGGCATACAACTTTATTTTTCTTTCCATTTTCCAATTTTGGCTTTGAGCCACTAATAAGATTGCTGAATGAATTTGGTC

Coding sequence (CDS)

ATGGCTCTTCTCTCTTCTGAGCCTCCATTTCATGTCTTGGCTGTTGATGACAGCCTTGTTGATAGGAAGCTCATTGAAAGGCTCCTCAAAACTTCCTCCTTCAATGTTACTGCTGTGGATTCTGGAAGCAAAGCTTTGGAGCTTCTGGGTTTGGTTAGAGAAAGAAATGGAAGCAACCATTCTCCTATTTCCCCTGAAAATAATAATAATAATAATCATCATCATCATCACCATCAAGAATCTGACTCACTTAAAGACATTCCTGTTGTGATTATGTCCTCTGAGAATGTTCCATCAAGAATCAACAGATGTTTGGAAGAAGGAGCTGAGGAGTTTTTGCTTAAACCAGTGAAATTATCTGATGTCAATAAGCTTAAGCCTTTCATATGTAGAGGAAAAGCCAAGGAGATGGATTTCAACAATCTGAAGAGAAAGGAAATGGAAAAGAGCCAATCATCTGAGAGAACAAGAACAAAATACAATGAGCTTTTCTGA

Protein sequence

MALLSSEPPFHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNGSNHSPISPENNNNNNHHHHHHQESDSLKDIPVVIMSSENVPSRINRCLEEGAEEFLLKPVKLSDVNKLKPFICRGKAKEMDFNNLKRKEMEKSQSSERTRTKYNELF

Homology

[Close]

BLAST of Lsi04G000290 vs. Swiss-Prot
Match: ARR7_ARATH (Two-component response regulator ARR7 OS=Arabidopsis thaliana GN=ARR7 PE=1 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 3.5e-24
Identity = 74/161 (45.96%), Postives = 100/161 (62.11%), Query Frame = 1


Query: 3   LLSSEPPFHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNGSNHSP 62
           L  + P  HVLAVDDS+VDRK+IERLL+ SS  VT V+SG++AL+ LGL   +  SN   
Sbjct: 17  LTVTTPELHVLAVDDSIVDRKVIERLLRISSCKVTTVESGTRALQYLGLDGGKGASNLKD 76

Query: 63  ISPE--------NNNNNNHHHHHHQESDSLKDIPVVIMSSENVPSRINRCLEEGAEEFLL 122
           +              +        +ES + +++PVVIMSSEN+  RI  CL+EGAEEFLL
Sbjct: 77  LKVNLIVTDYSMPGLSGYDLLKKIKESSAFREVPVVIMSSENILPRIQECLKEGAEEFLL 136

Query: 123 KPVKLSDVNKLKPFICRGKAKEMDF--NNLKRKEMEKSQSS 154
           KPVKL+DV ++K  I R +A+E     ++ KRK  E S +S
Sbjct: 137 KPVKLADVKRIKQLIMRNEAEECKILSHSNKRKLQEDSDTS 177

[Close]

BLAST of Lsi04G000290 vs. Swiss-Prot
Match: ARR15_ARATH (Two-component response regulator ARR15 OS=Arabidopsis thaliana GN=ARR15 PE=1 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 4.5e-24
Identity = 75/166 (45.18%), Postives = 103/166 (62.05%), Query Frame = 1


Query: 5   SSEPPFHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNGSN----- 64
           SS P  HVLAVDDS VDRK+IERLLK S+  VT V+SG++AL+ LGL  +   S      
Sbjct: 13  SSSPELHVLAVDDSFVDRKVIERLLKISACKVTTVESGTRALQYLGLDGDNGSSGLKDLK 72

Query: 65  -HSPISPENNNNNNHHH--HHHQESDSLKDIPVVIMSSENVPSRINRCLEEGAEEFLLKP 124
            +  ++  +      +      +ES +L++IPVVIMSSEN+  RI +C+ EGAEEFLLKP
Sbjct: 73  VNLIVTDYSMPGLTGYELLKKIKESSALREIPVVIMSSENIQPRIEQCMIEGAEEFLLKP 132

Query: 125 VKLSDVNKLKPFICR------GKAKEMDFNNLKRKEMEKSQSSERT 157
           VKL+DV +LK  I R      GK K++    + + +++ S SS  T
Sbjct: 133 VKLADVKRLKELIMRGGEAEEGKTKKLSPKRILQNDIDSSPSSSST 178

[Close]

BLAST of Lsi04G000290 vs. Swiss-Prot
Match: ARR5_ARATH (Two-component response regulator ARR5 OS=Arabidopsis thaliana GN=ARR5 PE=1 SV=2)

HSP 1 Score: 110.5 bits (275), Expect = 1.7e-23
Identity = 74/151 (49.01%), Postives = 97/151 (64.24%), Query Frame = 1


Query: 4   LSSEPPFHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNGS----- 63
           L+S    HVLAVDDS+VDRK IERLL+ SS  VT VDS ++AL+ LGL  E N S     
Sbjct: 19  LASPKLLHVLAVDDSMVDRKFIERLLRVSSCKVTVVDSATRALQYLGLDGENNSSVGFED 78

Query: 64  -NHSPISPENNNNNNHHHH---HHQESDSLKDIPVVIMSSENVPSRINRCLEEGAEEFLL 123
              + I  + +      +      +ES + ++IPVVIMSSEN+  RI+RCLEEGAE+FLL
Sbjct: 79  LKINLIMTDYSMPGMTGYELLKKIKESSAFREIPVVIMSSENILPRIDRCLEEGAEDFLL 138

Query: 124 KPVKLSDVNKLKPFICRGKAKEMDFNNLKRK 146
           KPVKL+DV +L+  +   KA+E  F N+  K
Sbjct: 139 KPVKLADVKRLRDSLM--KAEERAFKNIMHK 167

[Close]

BLAST of Lsi04G000290 vs. Swiss-Prot
Match: ORR3_ORYSJ (Two-component response regulator ORR3 OS=Oryza sativa subsp. japonica GN=RR3 PE=2 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 6.5e-23
Identity = 65/119 (54.62%), Postives = 83/119 (69.75%), Query Frame = 1


Query: 7   EPPFHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNGSNHSPISPE 66
           EP  HVLAVDDS+VDR +I RLL++S + VT VDSG +ALE+L L R  +        PE
Sbjct: 8   EPEPHVLAVDDSIVDRTVISRLLRSSKYRVTTVDSGKRALEVLSLDRNVHMIITDYCMPE 67

Query: 67  NNNNNNHHHHHHQESDSLKDIPVVIMSSENVPSRINRCLEEGAEEFLLKPVKLSDVNKL 126
               +       +ES  LK+IPVV+MSSEN P+RI RCLEEGAE+FL+KPV+ SDV++L
Sbjct: 68  MTGFDLLKRV--KESAELKEIPVVLMSSENSPTRIRRCLEEGAEDFLIKPVRPSDVSRL 124

[Close]

BLAST of Lsi04G000290 vs. Swiss-Prot
Match: ORR3_ORYSI (Two-component response regulator ORR3 OS=Oryza sativa subsp. indica GN=RR3 PE=2 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 6.5e-23
Identity = 65/119 (54.62%), Postives = 83/119 (69.75%), Query Frame = 1


Query: 7   EPPFHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNGSNHSPISPE 66
           EP  HVLAVDDS+VDR +I RLL++S + VT VDSG +ALE+L L R  +        PE
Sbjct: 8   EPEPHVLAVDDSIVDRTVISRLLRSSKYRVTTVDSGKRALEVLSLDRNVHMIITDYCMPE 67

Query: 67  NNNNNNHHHHHHQESDSLKDIPVVIMSSENVPSRINRCLEEGAEEFLLKPVKLSDVNKL 126
               +       +ES  LK+IPVV+MSSEN P+RI RCLEEGAE+FL+KPV+ SDV++L
Sbjct: 68  MTGFDLLKRV--KESAELKEIPVVLMSSENSPTRIRRCLEEGAEDFLIKPVRPSDVSRL 124

[Close]

BLAST of Lsi04G000290 vs. TrEMBL
Match: A0A0A0KV44_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G623800 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 6.9e-56
Identity = 133/177 (75.14%), Postives = 138/177 (77.97%), Query Frame = 1


Query: 1   MALLSSEPP-FHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNGSN 60
           M+LLSS+ P FHVLAVDDSLVDRKLIERLLKTSSFNVT VDSGSKALELLGLVRERNG+N
Sbjct: 1   MSLLSSDQPRFHVLAVDDSLVDRKLIERLLKTSSFNVTVVDSGSKALELLGLVRERNGTN 60

Query: 61  HS-PISPENNNNNNHHHHHHQ--------------------------ESDSLKDIPVVIM 120
           HS PISPE+      H  HHQ                          ESDSLKDIPVVIM
Sbjct: 61  HSSPISPED------HRQHHQEIEVNLIITDYCMPEMTGFDLLRKIKESDSLKDIPVVIM 120

Query: 121 SSENVPSRINRCLEEGAEEFLLKPVKLSDVNKLKPFICRG-KAKEMDFNNLKRKEME 149
           SSENVPSRINRCLEEGAEEFLLKPVKLSDVNKLKPFICRG KAKEMDFN+LKRKEME
Sbjct: 121 SSENVPSRINRCLEEGAEEFLLKPVKLSDVNKLKPFICRGIKAKEMDFNHLKRKEME 171

[Close]

BLAST of Lsi04G000290 vs. TrEMBL
Match: A0A061FRZ9_THECC (Two-component response regulator ARR8 OS=Theobroma cacao GN=TCM_045246 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 2.0e-39
Identity = 102/184 (55.43%), Postives = 124/184 (67.39%), Query Frame = 1


Query: 4   LSSEPPFHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNGSNHSPI 63
           +++E  FHVLAVDDSL+DRKLIERLLKTSS++VTAVDSGSKALE LGL         +P 
Sbjct: 3   MATEAQFHVLAVDDSLIDRKLIERLLKTSSYHVTAVDSGSKALEFLGLNGSHEDGQRNP- 62

Query: 64  SPENNNNNNHHHHHHQE------------------------SDSLKDIPVVIMSSENVPS 123
           SP + + +   H    E                        S S KDIPVVIMSSEN+PS
Sbjct: 63  SPASVSLDEDQHQQDVEVNLIITDYCMPGMTGYDLLRRIKGSSSFKDIPVVIMSSENIPS 122

Query: 124 RINRCLEEGAEEFLLKPVKLSDVNKLKPFICRGKAKEMDFNNLKRKEMEKSQSSERTRTK 164
           RINRCLE+GAEEF LKPV+LSDVNKL+P + +G++KEM  N  KRK ME+  + +RTRT+
Sbjct: 123 RINRCLEDGAEEFFLKPVQLSDVNKLRPHLMKGRSKEMQQNISKRKGMEEILTPDRTRTR 182

[Close]

BLAST of Lsi04G000290 vs. TrEMBL
Match: M5X712_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa025335mg PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 3.5e-39
Identity = 106/179 (59.22%), Postives = 123/179 (68.72%), Query Frame = 1


Query: 4   LSSEPPFHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGL----------VR 63
           LS+E  FHVLAVDDS++DRKLIERLLKTSS+ VTAVDSGSKALE LGL          + 
Sbjct: 3   LSAEAQFHVLAVDDSVIDRKLIERLLKTSSYQVTAVDSGSKALEFLGLHDQDDQIDADIP 62

Query: 64  ERNGSNHSPISPENNNNNNHHH---------HHHQESDSLKDIPVVIMSSENVPSRINRC 123
             +  NH      N    ++              +ES  LKDIPVVIMSSEN PSRINRC
Sbjct: 63  SLSPDNHQQDVEVNLIITDYCMPGMTGYDLLRKIKESHVLKDIPVVIMSSENEPSRINRC 122

Query: 124 LEEGAEEFLLKPVKLSDVNKLKPFICRGKAKEMDFNNLKRKEMEKSQSSERTRTKYNEL 164
           LEEGAEEF LKPV+LSDVNKLKP + +G+A E   NN KRK ME++Q+ ERTRTKYN+L
Sbjct: 123 LEEGAEEFFLKPVQLSDVNKLKPHMLKGRAMEDQSNNNKRKVMEQTQTPERTRTKYNDL 181

[Close]

BLAST of Lsi04G000290 vs. TrEMBL
Match: A0A067KWD7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24525 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 3.5e-39
Identity = 106/179 (59.22%), Postives = 123/179 (68.72%), Query Frame = 1


Query: 4   LSSEPPFHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERN------- 63
           +++EP FHVLAVDDSL+DRKLIERLLKTSS++VTAVDSGSKALE LGL  E         
Sbjct: 3   MATEPQFHVLAVDDSLIDRKLIERLLKTSSYHVTAVDSGSKALEFLGLNEEEQIDSNLTS 62

Query: 64  ----GSNHSPISPE--------NNNNNNHHHHHHQESDSLKDIPVVIMSSENVPSRINRC 123
               G +H  +                       +ES SLKDIPVVIMSSENVPSRINRC
Sbjct: 63  VSPPGDHHQDVEVNLIITDYCMPGMTGYDLLRKIKESKSLKDIPVVIMSSENVPSRINRC 122

Query: 124 LEEGAEEFLLKPVKLSDVNKLKPFICRGKAKEMDFNNLKRKEMEKSQSSERTRTKYNEL 164
           LEEGAEEF LKPV+LSDVNKLKP + +GKAKE + +N KRK M++  S ERTRT+Y  L
Sbjct: 123 LEEGAEEFFLKPVQLSDVNKLKPHLMKGKAKEDEPSN-KRKGMDEIHSPERTRTRYEGL 180

[Close]

BLAST of Lsi04G000290 vs. TrEMBL
Match: B9RGB1_RICCO (Two-component response regulator ARR8, putative OS=Ricinus communis GN=RCOM_1452640 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 1.0e-38
Identity = 106/184 (57.61%), Postives = 122/184 (66.30%), Query Frame = 1


Query: 4   LSSEPPFHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGL----VRERNGSN 63
           ++++  FHVLAVDDSL+DRKLIERLLKTSSF+VTAVDSGSKALE LGL      E     
Sbjct: 3   MAADSQFHVLAVDDSLIDRKLIERLLKTSSFHVTAVDSGSKALEFLGLNEEEEEEEEEEE 62

Query: 64  HSPISPENNNNNNHHHHHHQ-----------------------ESDSLKDIPVVIMSSEN 123
               SP +   ++ HH   Q                       ES S KDIPVVIMSSEN
Sbjct: 63  RRDSSPISVCPDDEHHQDLQVNLIITDYCMPGMTGYDLLRKIKESKSFKDIPVVIMSSEN 122

Query: 124 VPSRINRCLEEGAEEFLLKPVKLSDVNKLKPFICRGKAKEMDFNNLKRKEMEKSQSSERT 161
           VPSRINRCLEEGAEEF LKPV+LSDVNKLKP + +GK +E + NN KRK ME+  S ERT
Sbjct: 123 VPSRINRCLEEGAEEFFLKPVQLSDVNKLKPHMMKGKTRENEPNN-KRKGMEEIHSPERT 182

[Close]

BLAST of Lsi04G000290 vs. TAIR10
Match: AT1G19050.1 (AT1G19050.1 response regulator 7)

HSP 1 Score: 112.8 bits (281), Expect = 1.9e-25
Identity = 74/161 (45.96%), Postives = 100/161 (62.11%), Query Frame = 1


Query: 3   LLSSEPPFHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNGSNHSP 62
           L  + P  HVLAVDDS+VDRK+IERLL+ SS  VT V+SG++AL+ LGL   +  SN   
Sbjct: 17  LTVTTPELHVLAVDDSIVDRKVIERLLRISSCKVTTVESGTRALQYLGLDGGKGASNLKD 76

Query: 63  ISPE--------NNNNNNHHHHHHQESDSLKDIPVVIMSSENVPSRINRCLEEGAEEFLL 122
           +              +        +ES + +++PVVIMSSEN+  RI  CL+EGAEEFLL
Sbjct: 77  LKVNLIVTDYSMPGLSGYDLLKKIKESSAFREVPVVIMSSENILPRIQECLKEGAEEFLL 136

Query: 123 KPVKLSDVNKLKPFICRGKAKEMDF--NNLKRKEMEKSQSS 154
           KPVKL+DV ++K  I R +A+E     ++ KRK  E S +S
Sbjct: 137 KPVKLADVKRIKQLIMRNEAEECKILSHSNKRKLQEDSDTS 177

[Close]

BLAST of Lsi04G000290 vs. TAIR10
Match: AT1G74890.1 (AT1G74890.1 response regulator 15)

HSP 1 Score: 112.5 bits (280), Expect = 2.5e-25
Identity = 75/166 (45.18%), Postives = 103/166 (62.05%), Query Frame = 1


Query: 5   SSEPPFHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNGSN----- 64
           SS P  HVLAVDDS VDRK+IERLLK S+  VT V+SG++AL+ LGL  +   S      
Sbjct: 13  SSSPELHVLAVDDSFVDRKVIERLLKISACKVTTVESGTRALQYLGLDGDNGSSGLKDLK 72

Query: 65  -HSPISPENNNNNNHHH--HHHQESDSLKDIPVVIMSSENVPSRINRCLEEGAEEFLLKP 124
            +  ++  +      +      +ES +L++IPVVIMSSEN+  RI +C+ EGAEEFLLKP
Sbjct: 73  VNLIVTDYSMPGLTGYELLKKIKESSALREIPVVIMSSENIQPRIEQCMIEGAEEFLLKP 132

Query: 125 VKLSDVNKLKPFICR------GKAKEMDFNNLKRKEMEKSQSSERT 157
           VKL+DV +LK  I R      GK K++    + + +++ S SS  T
Sbjct: 133 VKLADVKRLKELIMRGGEAEEGKTKKLSPKRILQNDIDSSPSSSST 178

[Close]

BLAST of Lsi04G000290 vs. TAIR10
Match: AT3G48100.1 (AT3G48100.1 response regulator 5)

HSP 1 Score: 110.5 bits (275), Expect = 9.7e-25
Identity = 74/151 (49.01%), Postives = 97/151 (64.24%), Query Frame = 1


Query: 4   LSSEPPFHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNGS----- 63
           L+S    HVLAVDDS+VDRK IERLL+ SS  VT VDS ++AL+ LGL  E N S     
Sbjct: 19  LASPKLLHVLAVDDSMVDRKFIERLLRVSSCKVTVVDSATRALQYLGLDGENNSSVGFED 78

Query: 64  -NHSPISPENNNNNNHHHH---HHQESDSLKDIPVVIMSSENVPSRINRCLEEGAEEFLL 123
              + I  + +      +      +ES + ++IPVVIMSSEN+  RI+RCLEEGAE+FLL
Sbjct: 79  LKINLIMTDYSMPGMTGYELLKKIKESSAFREIPVVIMSSENILPRIDRCLEEGAEDFLL 138

Query: 124 KPVKLSDVNKLKPFICRGKAKEMDFNNLKRK 146
           KPVKL+DV +L+  +   KA+E  F N+  K
Sbjct: 139 KPVKLADVKRLRDSLM--KAEERAFKNIMHK 167

[Close]

BLAST of Lsi04G000290 vs. TAIR10
Match: AT1G59940.1 (AT1G59940.1 response regulator 3)

HSP 1 Score: 108.6 bits (270), Expect = 3.7e-24
Identity = 67/129 (51.94%), Postives = 86/129 (66.67%), Query Frame = 1


Query: 11  HVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNGSNHSPISPE---- 70
           HVLAVDDSLVDR +IERLL+ +S  VTAVDSG +ALE LGL  ++       +  +    
Sbjct: 34  HVLAVDDSLVDRIVIERLLRITSCKVTAVDSGWRALEFLGLDDDKAAVEFDRLKVDLIIT 93

Query: 71  ----NNNNNNHHHHHHQESDSLKDIPVVIMSSENVPSRINRCLEEGAEEFLLKPVKLSDV 130
                           +ES S K++PVVIMSSENV +RI+RCLEEGAE+FLLKPVKL+DV
Sbjct: 94  DYCMPGMTGYELLKKIKESTSFKEVPVVIMSSENVMTRIDRCLEEGAEDFLLKPVKLADV 153

Query: 131 NKLKPFICR 132
            +L+ ++ R
Sbjct: 154 KRLRSYLTR 162

[Close]

BLAST of Lsi04G000290 vs. TAIR10
Match: AT1G10470.1 (AT1G10470.1 response regulator 4)

HSP 1 Score: 105.9 bits (263), Expect = 2.4e-23
Identity = 68/151 (45.03%), Postives = 97/151 (64.24%), Query Frame = 1


Query: 11  HVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNGSNHSPISPE---- 70
           HVLAVDDSLVDR +IERLL+ +S  VTAVDSG +ALE LGL  E+  +    +  +    
Sbjct: 35  HVLAVDDSLVDRIVIERLLRITSCKVTAVDSGWRALEFLGLDNEKASAEFDRLKVDLIIT 94

Query: 71  ----NNNNNNHHHHHHQESDSLKDIPVVIMSSENVPSRINRCLEEGAEEFLLKPVKLSDV 130
                           +ES + +++PVVIMSSENV +RI+RCLEEGA++FLLKPVKL+DV
Sbjct: 95  DYCMPGMTGYELLKKIKESSNFREVPVVIMSSENVLTRIDRCLEEGAQDFLLKPVKLADV 154

Query: 131 NKLKPFICRGKAKEMDFNNLKRKEMEKSQSS 154
            +L+  +     K++  +N  ++++ +  SS
Sbjct: 155 KRLRSHL----TKDVKLSNGNKRKLPEDSSS 181

[Close]

BLAST of Lsi04G000290 vs. NCBI nr
Match: gi|659092213|ref|XP_008446956.1| (PREDICTED: two-component response regulator ARR9-like isoform X1 [Cucumis melo])

HSP 1 Score: 229.9 bits (585), Expect = 3.1e-57
Identity = 135/177 (76.27%), Postives = 140/177 (79.10%), Query Frame = 1


Query: 1   MALLSSEPP-FHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNGSN 60
           M+LLSS+ P FHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNG+N
Sbjct: 1   MSLLSSDQPRFHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNGTN 60

Query: 61  H-SPISPENNNNNNHHHHHHQ--------------------------ESDSLKDIPVVIM 120
           H SPISPEN     H  HHHQ                          ESDSLKDIPVVIM
Sbjct: 61  HNSPISPEN-----HRQHHHQEIEVNLIITDYCMPEMTGYDLLRKIKESDSLKDIPVVIM 120

Query: 121 SSENVPSRINRCLEEGAEEFLLKPVKLSDVNKLKPFICRG-KAKEMDFNNLKRKEME 149
           SSENVPSRINRCLEEGAEEFLLKPVKLSDVNKLKPFICRG KAKE+DFN+LKRKEME
Sbjct: 121 SSENVPSRINRCLEEGAEEFLLKPVKLSDVNKLKPFICRGTKAKEIDFNHLKRKEME 172

[Close]

BLAST of Lsi04G000290 vs. NCBI nr
Match: gi|449449356|ref|XP_004142431.1| (PREDICTED: two-component response regulator ARR9-like [Cucumis sativus])

HSP 1 Score: 224.9 bits (572), Expect = 1.0e-55
Identity = 133/177 (75.14%), Postives = 138/177 (77.97%), Query Frame = 1


Query: 1   MALLSSEPP-FHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNGSN 60
           M+LLSS+ P FHVLAVDDSLVDRKLIERLLKTSSFNVT VDSGSKALELLGLVRERNG+N
Sbjct: 1   MSLLSSDQPRFHVLAVDDSLVDRKLIERLLKTSSFNVTVVDSGSKALELLGLVRERNGTN 60

Query: 61  HS-PISPENNNNNNHHHHHHQ--------------------------ESDSLKDIPVVIM 120
           HS PISPE+      H  HHQ                          ESDSLKDIPVVIM
Sbjct: 61  HSSPISPED------HRQHHQEIEVNLIITDYCMPEMTGFDLLRKIKESDSLKDIPVVIM 120

Query: 121 SSENVPSRINRCLEEGAEEFLLKPVKLSDVNKLKPFICRG-KAKEMDFNNLKRKEME 149
           SSENVPSRINRCLEEGAEEFLLKPVKLSDVNKLKPFICRG KAKEMDFN+LKRKEME
Sbjct: 121 SSENVPSRINRCLEEGAEEFLLKPVKLSDVNKLKPFICRGIKAKEMDFNHLKRKEME 171

[Close]

BLAST of Lsi04G000290 vs. NCBI nr
Match: gi|1009170555|ref|XP_015866264.1| (PREDICTED: two-component response regulator ORR9-like [Ziziphus jujuba])

HSP 1 Score: 172.6 bits (436), Expect = 5.9e-40
Identity = 107/187 (57.22%), Postives = 126/187 (67.38%), Query Frame = 1


Query: 1   MALLSSEPPFHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNGSNH 60
           M + ++E  FHVLAVDDSLVDRKLIERLLKTSS+ VTAVDSGSKALE LGL  E +    
Sbjct: 1   MGMAAAEAQFHVLAVDDSLVDRKLIERLLKTSSYQVTAVDSGSKALEFLGLFEEDDQLLG 60

Query: 61  SPISPENNNNNNHHH-----------------------HHHQESDSLKDIPVVIMSSENV 120
            P SP  +  N +H                           +ES SL+DIPVVIMSSENV
Sbjct: 61  DPDSPSVSPKNINHQPDLEVNLIITDYCMPGMSGYDLLRKIKESKSLRDIPVVIMSSENV 120

Query: 121 PSRINRCLEEGAEEFLLKPVKLSDVNKLKPFICRGKAKEMDFNNLKRKEMEKSQ-SSERT 164
           PSRINRCLEEGA+EF LKPV++ DV+KLKP + + KAKE   N  KRK ME++Q S +RT
Sbjct: 121 PSRINRCLEEGADEFFLKPVQMEDVSKLKPHLMKSKAKEYQPNINKRKGMEENQLSDQRT 180

[Close]

BLAST of Lsi04G000290 vs. NCBI nr
Match: gi|590569360|ref|XP_007011051.1| (Two-component response regulator ARR8 [Theobroma cacao])

HSP 1 Score: 170.2 bits (430), Expect = 2.9e-39
Identity = 102/184 (55.43%), Postives = 124/184 (67.39%), Query Frame = 1


Query: 4   LSSEPPFHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNGSNHSPI 63
           +++E  FHVLAVDDSL+DRKLIERLLKTSS++VTAVDSGSKALE LGL         +P 
Sbjct: 3   MATEAQFHVLAVDDSLIDRKLIERLLKTSSYHVTAVDSGSKALEFLGLNGSHEDGQRNP- 62

Query: 64  SPENNNNNNHHHHHHQE------------------------SDSLKDIPVVIMSSENVPS 123
           SP + + +   H    E                        S S KDIPVVIMSSEN+PS
Sbjct: 63  SPASVSLDEDQHQQDVEVNLIITDYCMPGMTGYDLLRRIKGSSSFKDIPVVIMSSENIPS 122

Query: 124 RINRCLEEGAEEFLLKPVKLSDVNKLKPFICRGKAKEMDFNNLKRKEMEKSQSSERTRTK 164
           RINRCLE+GAEEF LKPV+LSDVNKL+P + +G++KEM  N  KRK ME+  + +RTRT+
Sbjct: 123 RINRCLEDGAEEFFLKPVQLSDVNKLRPHLMKGRSKEMQQNISKRKGMEEILTPDRTRTR 182

[Close]

BLAST of Lsi04G000290 vs. NCBI nr
Match: gi|643733683|gb|KDP40526.1| (hypothetical protein JCGZ_24525 [Jatropha curcas])

HSP 1 Score: 169.5 bits (428), Expect = 5.0e-39
Identity = 106/179 (59.22%), Postives = 123/179 (68.72%), Query Frame = 1


Query: 4   LSSEPPFHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERN------- 63
           +++EP FHVLAVDDSL+DRKLIERLLKTSS++VTAVDSGSKALE LGL  E         
Sbjct: 3   MATEPQFHVLAVDDSLIDRKLIERLLKTSSYHVTAVDSGSKALEFLGLNEEEQIDSNLTS 62

Query: 64  ----GSNHSPISPE--------NNNNNNHHHHHHQESDSLKDIPVVIMSSENVPSRINRC 123
               G +H  +                       +ES SLKDIPVVIMSSENVPSRINRC
Sbjct: 63  VSPPGDHHQDVEVNLIITDYCMPGMTGYDLLRKIKESKSLKDIPVVIMSSENVPSRINRC 122

Query: 124 LEEGAEEFLLKPVKLSDVNKLKPFICRGKAKEMDFNNLKRKEMEKSQSSERTRTKYNEL 164
           LEEGAEEF LKPV+LSDVNKLKP + +GKAKE + +N KRK M++  S ERTRT+Y  L
Sbjct: 123 LEEGAEEFFLKPVQLSDVNKLKPHLMKGKAKEDEPSN-KRKGMDEIHSPERTRTRYEGL 180

The following BLAST results are available for this feature:

BLAST of Lsi04G000290 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ARR7_ARATH	3.5e-24	45.96	Two-component response regulator ARR7 OS=Arabidopsis thaliana GN=ARR7 PE=1 SV=1	[more]
ARR15_ARATH	4.5e-24	45.18	Two-component response regulator ARR15 OS=Arabidopsis thaliana GN=ARR15 PE=1 SV=...	[more]
ARR5_ARATH	1.7e-23	49.01	Two-component response regulator ARR5 OS=Arabidopsis thaliana GN=ARR5 PE=1 SV=2	[more]
ORR3_ORYSJ	6.5e-23	54.62	Two-component response regulator ORR3 OS=Oryza sativa subsp. japonica GN=RR3 PE=...	[more]
ORR3_ORYSI	6.5e-23	54.62	Two-component response regulator ORR3 OS=Oryza sativa subsp. indica GN=RR3 PE=2 ...	[more]

BLAST of Lsi04G000290 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KV44_CUCSA	6.9e-56	75.14	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G623800 PE=4 SV=1	[more]
A0A061FRZ9_THECC	2.0e-39	55.43	Two-component response regulator ARR8 OS=Theobroma cacao GN=TCM_045246 PE=4 SV=1	[more]
M5X712_PRUPE	3.5e-39	59.22	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa025335mg PE=4 SV=1	[more]
A0A067KWD7_JATCU	3.5e-39	59.22	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24525 PE=4 SV=1	[more]
B9RGB1_RICCO	1.0e-38	57.61	Two-component response regulator ARR8, putative OS=Ricinus communis GN=RCOM_1452...	[more]

BLAST of Lsi04G000290 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G19050.1	1.9e-25	45.96	response regulator 7	[more]
AT1G74890.1	2.5e-25	45.18	response regulator 15	[more]
AT3G48100.1	9.7e-25	49.01	response regulator 5	[more]
AT1G59940.1	3.7e-24	51.94	response regulator 3	[more]
AT1G10470.1	2.4e-23	45.03	response regulator 4	[more]

BLAST of Lsi04G000290 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659092213\|ref\|XP_008446956.1\|	3.1e-57	76.27	PREDICTED: two-component response regulator ARR9-like isoform X1 [Cucumis melo]	[more]
gi\|449449356\|ref\|XP_004142431.1\|	1.0e-55	75.14	PREDICTED: two-component response regulator ARR9-like [Cucumis sativus]	[more]
gi\|1009170555\|ref\|XP_015866264.1\|	5.9e-40	57.22	PREDICTED: two-component response regulator ORR9-like [Ziziphus jujuba]	[more]
gi\|590569360\|ref\|XP_007011051.1\|	2.9e-39	55.43	Two-component response regulator ARR8 [Theobroma cacao]	[more]
gi\|643733683\|gb\|KDP40526.1\|	5.0e-39	59.22	hypothetical protein JCGZ_24525 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0000160	phosphorelay signal transduction system

Vocabulary: **INTERPRO**
Term	Definition
IPR011006	CheY-like_superfamily
IPR001789	Sig_transdc_resp-reg_receiver

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000160	phosphorelay signal transduction system
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G000290.1	Lsi04G000290.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001789	Signal transduction response regulator, receiver domain	PFAM	PF00072	Response_reg	coord: 85..122 score: 7.
IPR001789	Signal transduction response regulator, receiver domain	PROFILE	PS50110	RESPONSE_REGULATORY	coord: 11..130 score: 16
IPR011006	CheY-like superfamily	unknown	SSF52172	CheY-like	coord: 7..122 score: 1.08
None	No IPR available	GENE3D	G3DSA:3.40.50.2300		coord: 80..153 score: 1.0E-9coord: 7..54 score: 1.
None	No IPR available	PANTHER	PTHR26402	RESPONSE REGULATOR OF TWO-COMPONENT SYSTEM	coord: 10..49 score: 3.1E-59coord: 66..162 score: 3.1
None	No IPR available	PANTHER	PTHR26402:SF574	SUBFAMILY NOT NAMED	coord: 66..162 score: 3.1E-59coord: 10..49 score: 3.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi04G000290	Csa5G623800	Cucumber (Chinese Long) v2	culsiB368
Lsi04G000290	CSPI05G27580	Wild cucumber (PI 183967)	cpilsiB372
Lsi04G000290	Cucsa.307960	Cucumber (Gy14) v1	cgylsiB497
Lsi04G000290	CmoCh04G014040	Cucurbita moschata (Rifu)	cmolsiB660
Lsi04G000290	Cla009939	Watermelon (97103) v1	lsiwmB320
Lsi04G000290	MELO3C012470	Melon (DHL92) v3.5.1	lsimeB281
Lsi04G000290	ClCG05G026780	Watermelon (Charleston Gray)	lsiwcgB291
Lsi04G000290	MELO3C012470.2	Melon (DHL92) v3.6.1	lsimedB297
Lsi04G000290	Cla97C05G109060	Watermelon (97103) v2	lsiwmbB292
Lsi04G000290	Bhi07G001036	Wax gourd	lsiwgoB383
Lsi04G000290	Cp4.1LG01g15020	Cucurbita pepo (Zucchini)	cpelsiB352
Lsi04G000290	CsGy5G026990	Cucumber (Gy14) v2	cgyblsiB337
Lsi04G000290	Carg01991	Silver-seed gourd	carlsiB767
Lsi04G000290	CsaV3_5G036740	Cucumber (Chinese Long) v3	cuclsiB393

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi04G000290	Silver-seed gourd	carlsiB664
Lsi04G000290	Cucurbita maxima (Rimu)	cmalsiB379
Lsi04G000290	Cucurbita maxima (Rimu)	cmalsiB669
Lsi04G000290	Cucurbita moschata (Rifu)	cmolsiB364
Lsi04G000290	Cucurbita pepo (Zucchini)	cpelsiB032