Cucsa.257390 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.257390
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Unknown protein
Location	scaffold02229 : 4704871 .. 4705179 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTTACCGGCTAAATTTCATTCTATTTTACCTGCTATTGTCATCCCTGCTGTTCTTTTATGTCGAGGCAAGAAATGGAAGATAGATTATCATGGAAACCGACGTGGTAAGGCACTCGATTCAAAACAGTGGAGGAAATTTGTTAATGATAATTGTCTCAAATCTGGAGATGCTATTGTATTTGAGCTCTTGGAGTGCAGCAGCAGCATACTTAAATTTAGAGTTCAAATTCTCAGTGGTGACATACCTTTGGAGCTGCACGACAAGTTTAGTGGGGAGACAAAAGAGACTCCCATACACCTTGACTAG

mRNA sequence

GTTTTACCGGCTAAATTTCATTCTATTTTACCTGCTATTGTCATCCCTGCTGTTCTTTTATGTCGAGGCAAGAAATGGAAGATAGATTATCATGGAAACCGACGTGGTAAGGCACTCGATTCAAAACAGTGGAGGAAATTTGTTAATGATAATTGTCTCAAATCTGGAGATGCTATTGTATTTGAGCTCTTGGAGTGCAGCAGCAGCATACTTAAATTTAGAGTTCAAATTCTCAGTGGTGACATACCTTTGGAGCTGCACGACAAGTTTAGTGGGGAGACAAAAGAGACTCCCATACACCTTGACTAG

Coding sequence (CDS)

GTTTTACCGGCTAAATTTCATTCTATTTTACCTGCTATTGTCATCCCTGCTGTTCTTTTATGTCGAGGCAAGAAATGGAAGATAGATTATCATGGAAACCGACGTGGTAAGGCACTCGATTCAAAACAGTGGAGGAAATTTGTTAATGATAATTGTCTCAAATCTGGAGATGCTATTGTATTTGAGCTCTTGGAGTGCAGCAGCAGCATACTTAAATTTAGAGTTCAAATTCTCAGTGGTGACATACCTTTGGAGCTGCACGACAAGTTTAGTGGGGAGACAAAAGAGACTCCCATACACCTTGACTAG

Protein sequence

VLPAKFHSILPAIVIPAVLLCRGKKWKIDYHGNRRGKALDSKQWRKFVNDNCLKSGDAIVFELLECSSSILKFRVQILSGDIPLELHDKFSGETKETPIHLD*

Homology

[Close]

BLAST of Cucsa.257390 vs. Swiss-Prot
Match: Y4869_ORYSJ (B3 domain-containing protein Os04g0386900 OS=Oryza sativa subsp. japonica GN=Os04g0386900 PE=2 SV=3)

HSP 1 Score: 68.9 bits (167), Expect = 3.6e-11
Identity = 40/105 (38.10%), Postives = 57/105 (54.29%), Query Frame = 1


Query: 1   VLPAKFHSILPAIVIPAVLLCRGKKWKIDYHGNRRGKALDSKQWRKFVNDNCLKSGDAIV 60
           V+P  F  +LP+   PA L  RG+ W + + G R  + L++  WR F  DN L+ GD  V
Sbjct: 109 VVPRSFAPLLPSRTTPATLSWRGRSWGMRFTGGRLIQRLEAG-WRGFAVDNDLRLGDGCV 168

Query: 61  FELLECSSSI---LKFRVQILSGDIPLELHDKFSGETKETPIHLD 103
           FELL         ++FRVQ+L  +IP  +  +  G T  TPI +D
Sbjct: 169 FELLVGGGGEQERVEFRVQVLRAEIPARIRGRAGGYTSATPIVID 212

[Close]

BLAST of Cucsa.257390 vs. TrEMBL
Match: A0A0A0L3V3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G126890 PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 3.8e-52
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 1


Query: 1   VLPAKFHSILPAIVIPAVLLCRGKKWKIDYHGNRRGKALDSKQWRKFVNDNCLKSGDAIV 60
           VLPAKFHSILPAIVIPAVLLCRGKKWKIDYHGNRRGKALDSKQWRKFVNDNCLKSGDAIV
Sbjct: 46  VLPAKFHSILPAIVIPAVLLCRGKKWKIDYHGNRRGKALDSKQWRKFVNDNCLKSGDAIV 105

Query: 61  FELLECSSSILKFRVQILSGDIPLELHDKFSGETKETPIHLD 103
           FELLECSSSILKFRVQILSGDIPLELHDKFSGETKETPIHLD
Sbjct: 106 FELLECSSSILKFRVQILSGDIPLELHDKFSGETKETPIHLD 147

[Close]

BLAST of Cucsa.257390 vs. TrEMBL
Match: A5AIM5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020729 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 4.6e-21
Identity = 53/102 (51.96%), Postives = 73/102 (71.57%), Query Frame = 1


Query: 1   VLPAKFHSILPAIVIPAVLLCRGKKWKIDYHGNRRGKALDSKQWRKFVNDNCLKSGDAIV 60
           VLP K H  +P+ VIPAVL+ + K+W++ ++G+ R        WR FVNDN LK+GDA V
Sbjct: 59  VLPTKMHPSVPSAVIPAVLVHQXKRWEMTFNGDHRTHKRFDIGWRTFVNDNNLKAGDACV 118

Query: 61  FELLECSSSILKFRVQILSGDIPLELHDKFSGETKETPIHLD 103
           FEL+EC++S +KFRVQIL GDIP  L D+ +GET +T I ++
Sbjct: 119 FELMECNTSNIKFRVQILRGDIPSMLLDRANGETSDTAIVIE 160

[Close]

BLAST of Cucsa.257390 vs. TrEMBL
Match: F6I5F3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0024g00930 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 4.6e-21
Identity = 53/102 (51.96%), Postives = 73/102 (71.57%), Query Frame = 1


Query: 1   VLPAKFHSILPAIVIPAVLLCRGKKWKIDYHGNRRGKALDSKQWRKFVNDNCLKSGDAIV 60
           VLP K H  +P+ VIPAVL+ + K+W++ ++G+ R        WR FVNDN LK+GDA V
Sbjct: 90  VLPTKMHPSVPSAVIPAVLVHQDKRWEMTFNGDHRTHKRFDIGWRTFVNDNNLKAGDACV 149

Query: 61  FELLECSSSILKFRVQILSGDIPLELHDKFSGETKETPIHLD 103
           FEL+EC++S +KFRVQIL GDIP  L D+ +GET +T I ++
Sbjct: 150 FELMECNTSNIKFRVQILRGDIPSMLLDRANGETSDTAIVIE 191

[Close]

BLAST of Cucsa.257390 vs. TrEMBL
Match: M5X861_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa025386mg PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 3.0e-20
Identity = 55/102 (53.92%), Postives = 67/102 (65.69%), Query Frame = 1


Query: 1   VLPAKFHSILPAIVIPAVLLCRGKKWKIDYHGNRRGKALDSKQWRKFVNDNCLKSGDAIV 60
           V+P KF + LP+  IP VL  RGK W++ YHG+   K LD+  W+ F  DN LK GDA V
Sbjct: 50  VVPGKFSATLPSCSIPTVLTFRGKNWEMTYHGSSNYKRLDN--WKAFAIDNNLKVGDACV 109

Query: 61  FELLECSSSILKFRVQILSGDIPLELHDKFSGETKETPIHLD 103
           FE LECSS+ L FRVQIL GDIP E  DK  G+  + PI L+
Sbjct: 110 FEQLECSSTRLVFRVQILRGDIPSEFLDKLDGDNVDAPIVLE 149

[Close]

BLAST of Cucsa.257390 vs. TrEMBL
Match: M5X1G4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012926mg PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 8.6e-20
Identity = 55/102 (53.92%), Postives = 67/102 (65.69%), Query Frame = 1


Query: 1   VLPAKFHSILPAIVIPAVLLCRGKKWKIDYHGNRRGKALDSKQWRKFVNDNCLKSGDAIV 60
           V+P KF + LP+  IP VL+ RGK W++ YHG+   K LD+  WR F  DN LK GDA V
Sbjct: 49  VVPGKFSATLPSCSIPTVLIFRGKNWEMIYHGSSSHKRLDN--WRAFAVDNNLKVGDACV 108

Query: 61  FELLECSSSILKFRVQILSGDIPLELHDKFSGETKETPIHLD 103
           FE LECSS+ L FRVQIL GDI  E  DK  G+  + PI L+
Sbjct: 109 FEQLECSSTRLVFRVQILRGDISSEFLDKLGGDNVDAPIVLE 148

[Close]

BLAST of Cucsa.257390 vs. NCBI nr
Match: gi|778677528|ref|XP_011650806.1| (PREDICTED: B3 domain-containing protein Os04g0386900-like [Cucumis sativus])

HSP 1 Score: 211.8 bits (538), Expect = 5.5e-52
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 1


Query: 1   VLPAKFHSILPAIVIPAVLLCRGKKWKIDYHGNRRGKALDSKQWRKFVNDNCLKSGDAIV 60
           VLPAKFHSILPAIVIPAVLLCRGKKWKIDYHGNRRGKALDSKQWRKFVNDNCLKSGDAIV
Sbjct: 46  VLPAKFHSILPAIVIPAVLLCRGKKWKIDYHGNRRGKALDSKQWRKFVNDNCLKSGDAIV 105

Query: 61  FELLECSSSILKFRVQILSGDIPLELHDKFSGETKETPIHLD 103
           FELLECSSSILKFRVQILSGDIPLELHDKFSGETKETPIHLD
Sbjct: 106 FELLECSSSILKFRVQILSGDIPLELHDKFSGETKETPIHLD 147

[Close]

BLAST of Cucsa.257390 vs. NCBI nr
Match: gi|147774873|emb|CAN73443.1| (hypothetical protein VITISV_020729 [Vitis vinifera])

HSP 1 Score: 108.6 bits (270), Expect = 6.5e-21
Identity = 53/102 (51.96%), Postives = 73/102 (71.57%), Query Frame = 1


Query: 1   VLPAKFHSILPAIVIPAVLLCRGKKWKIDYHGNRRGKALDSKQWRKFVNDNCLKSGDAIV 60
           VLP K H  +P+ VIPAVL+ + K+W++ ++G+ R        WR FVNDN LK+GDA V
Sbjct: 59  VLPTKMHPSVPSAVIPAVLVHQXKRWEMTFNGDHRTHKRFDIGWRTFVNDNNLKAGDACV 118

Query: 61  FELLECSSSILKFRVQILSGDIPLELHDKFSGETKETPIHLD 103
           FEL+EC++S +KFRVQIL GDIP  L D+ +GET +T I ++
Sbjct: 119 FELMECNTSNIKFRVQILRGDIPSMLLDRANGETSDTAIVIE 160

[Close]

BLAST of Cucsa.257390 vs. NCBI nr
Match: gi|225436198|ref|XP_002267731.1| (PREDICTED: B3 domain-containing protein Os04g0386900 [Vitis vinifera])

HSP 1 Score: 108.6 bits (270), Expect = 6.5e-21
Identity = 53/102 (51.96%), Postives = 73/102 (71.57%), Query Frame = 1


Query: 1   VLPAKFHSILPAIVIPAVLLCRGKKWKIDYHGNRRGKALDSKQWRKFVNDNCLKSGDAIV 60
           VLP K H  +P+ VIPAVL+ + K+W++ ++G+ R        WR FVNDN LK+GDA V
Sbjct: 90  VLPTKMHPSVPSAVIPAVLVHQDKRWEMTFNGDHRTHKRFDIGWRTFVNDNNLKAGDACV 149

Query: 61  FELLECSSSILKFRVQILSGDIPLELHDKFSGETKETPIHLD 103
           FEL+EC++S +KFRVQIL GDIP  L D+ +GET +T I ++
Sbjct: 150 FELMECNTSNIKFRVQILRGDIPSMLLDRANGETSDTAIVIE 191

[Close]

BLAST of Cucsa.257390 vs. NCBI nr
Match: gi|296090175|emb|CBI39994.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 108.2 bits (269), Expect = 8.5e-21
Identity = 53/99 (53.54%), Postives = 71/99 (71.72%), Query Frame = 1


Query: 1   VLPAKFHSILPAIVIPAVLLCRGKKWKIDYHGNRRGKALDSKQWRKFVNDNCLKSGDAIV 60
           VLP K H  +P+ VIPAVL+ + K+W++ ++G+ R        WR FVNDN LK+GDA V
Sbjct: 90  VLPTKMHPSVPSAVIPAVLVHQDKRWEMTFNGDHRTHKRFDIGWRTFVNDNNLKAGDACV 149

Query: 61  FELLECSSSILKFRVQILSGDIPLELHDKFSGETKETPI 100
           FEL+EC++S +KFRVQIL GDIP  L D+ +GET +T I
Sbjct: 150 FELMECNTSNIKFRVQILRGDIPSMLLDRANGETSDTAI 188

[Close]

BLAST of Cucsa.257390 vs. NCBI nr
Match: gi|694428103|ref|XP_009341640.1| (PREDICTED: B3 domain-containing protein Os04g0386900-like isoform X2 [Pyrus x bretschneideri])

HSP 1 Score: 108.2 bits (269), Expect = 8.5e-21
Identity = 59/103 (57.28%), Postives = 69/103 (66.99%), Query Frame = 1


Query: 1   VLPAKFHSILPAIVIPAVLLCRGKKWKIDY-HGNRRGKALDSKQWRKFVNDNCLKSGDAI 60
           V+PAKF   LP+  IP VL   GK W++ Y HG+  G+      WR+FVNDN LK GDA 
Sbjct: 43  VIPAKFQQTLPSCSIPTVLTFGGKNWEMTYTHGS--GQRKFDTNWREFVNDNNLKVGDAC 102

Query: 61  VFELLECSSSILKFRVQILSGDIPLELHDKFSGETKETPIHLD 103
           VFELLECSS+ L FRVQIL GDIP EL  K  GET + PI +D
Sbjct: 103 VFELLECSSTKLVFRVQILRGDIPSELLGKLKGETVDAPIIID 143

The following BLAST results are available for this feature:

BLAST of Cucsa.257390 vs. Swiss-Prot


Match Name	E-value	Identity	Description
Y4869_ORYSJ	3.6e-11	38.10	B3 domain-containing protein Os04g0386900 OS=Oryza sativa subsp. japonica GN=Os0...	[more]

BLAST of Cucsa.257390 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3V3_CUCSA	3.8e-52	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G126890 PE=4 SV=1	[more]
A5AIM5_VITVI	4.6e-21	51.96	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020729 PE=4 SV=1	[more]
F6I5F3_VITVI	4.6e-21	51.96	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0024g00930 PE=4 SV=...	[more]
M5X861_PRUPE	3.0e-20	53.92	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa025386mg PE=4 S...	[more]
M5X1G4_PRUPE	8.6e-20	53.92	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012926mg PE=4 SV=1	[more]

BLAST of Cucsa.257390 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778677528\|ref\|XP_011650806.1\|	5.5e-52	100.00	PREDICTED: B3 domain-containing protein Os04g0386900-like [Cucumis sativus]	[more]
gi\|147774873\|emb\|CAN73443.1\|	6.5e-21	51.96	hypothetical protein VITISV_020729 [Vitis vinifera]	[more]
gi\|225436198\|ref\|XP_002267731.1\|	6.5e-21	51.96	PREDICTED: B3 domain-containing protein Os04g0386900 [Vitis vinifera]	[more]
gi\|296090175\|emb\|CBI39994.3\|	8.5e-21	53.54	unnamed protein product [Vitis vinifera]	[more]
gi\|694428103\|ref\|XP_009341640.1\|	8.5e-21	57.28	PREDICTED: B3 domain-containing protein Os04g0386900-like isoform X2 [Pyrus x br...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003340	B3_DNA-bd
IPR015300	DNA-bd_pseudobarrel_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0008150	biological_process
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.257390.1	Cucsa.257390.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003340	B3 DNA binding domain	PFAM	PF02362	B3	coord: 22..75 score: 1.
IPR003340	B3 DNA binding domain	PROFILE	PS50863	B3	coord: 1..81 score: 12
IPR015300	DNA-binding pseudobarrel domain	GENE3D	G3DSA:2.40.330.10		coord: 16..78 score: 6.4
IPR015300	DNA-binding pseudobarrel domain	unknown	SSF101936	DNA-binding pseudobarrel domain	coord: 19..77 score: 1.28
None	No IPR available	PANTHER	PTHR31391	FAMILY NOT NAMED	coord: 1..99 score: 8.3
None	No IPR available	PANTHER	PTHR31391:SF15	SUBFAMILY NOT NAMED	coord: 1..99 score: 8.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.257390	Cla021334	Watermelon (97103) v1	cgywmB479
Cucsa.257390	Csa3G126890	Cucumber (Chinese Long) v2	cgycuB366
Cucsa.257390	MELO3C006216	Melon (DHL92) v3.5.1	cgymeB439
Cucsa.257390	ClCG05G002510	Watermelon (Charleston Gray)	cgywcgB451
Cucsa.257390	CSPI03G09800	Wild cucumber (PI 183967)	cgycpiB383
Cucsa.257390	CmaCh06G011520	Cucurbita maxima (Rimu)	cgycmaB0727
Cucsa.257390	CmoCh06G011810	Cucurbita moschata (Rifu)	cgycmoB0718
Cucsa.257390	Lsi05G019330	Bottle gourd (USVL1VR-Ls)	cgylsiB415
Cucsa.257390	Cp4.1LG08g02060	Cucurbita pepo (Zucchini)	cgycpeB0687
Cucsa.257390	MELO3C006216.2	Melon (DHL92) v3.6.1	cgymedB432
Cucsa.257390	CsaV3_3G009950	Cucumber (Chinese Long) v3	cgycucB387
Cucsa.257390	Cla97C05G083010	Watermelon (97103) v2	cgywmbB452
Cucsa.257390	Bhi01G000055	Wax gourd	cgywgoB523
Cucsa.257390	Carg06365	Silver-seed gourd	carcgyB1077

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.257390	Watermelon (97103) v2	cgywmbB455
Cucsa.257390	Wax gourd	cgywgoB506
Cucsa.257390	Cucumber (Gy14) v1	cgycgyB130
Cucsa.257390	Cucurbita maxima (Rimu)	cgycmaB0708
Cucsa.257390	Cucurbita maxima (Rimu)	cgycmaB0709
Cucsa.257390	Cucurbita maxima (Rimu)	cgycmaB0715
Cucsa.257390	Cucurbita maxima (Rimu)	cgycmaB0730
Cucsa.257390	Cucurbita moschata (Rifu)	cgycmoB0700
Cucsa.257390	Cucurbita moschata (Rifu)	cgycmoB0708
Cucsa.257390	Cucurbita moschata (Rifu)	cgycmoB0719
Cucsa.257390	Wild cucumber (PI 183967)	cgycpiB393
Cucsa.257390	Cucumber (Chinese Long) v2	cgycuB374
Cucsa.257390	Melon (DHL92) v3.5.1	cgymeB429
Cucsa.257390	Watermelon (Charleston Gray)	cgywcgB454
Cucsa.257390	Watermelon (97103) v1	cgywmB484
Cucsa.257390	Cucurbita pepo (Zucchini)	cgycpeB0670
Cucsa.257390	Cucurbita pepo (Zucchini)	cgycpeB0679
Cucsa.257390	Cucurbita pepo (Zucchini)	cgycpeB0682
Cucsa.257390	Bottle gourd (USVL1VR-Ls)	cgylsiB410
Cucsa.257390	Melon (DHL92) v3.6.1	cgymedB423
Cucsa.257390	Silver-seed gourd	carcgyB0269
Cucsa.257390	Silver-seed gourd	carcgyB0693
Cucsa.257390	Silver-seed gourd	carcgyB1191
Cucsa.257390	Cucumber (Chinese Long) v3	cgycucB398