Carg06365 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg06365
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	B3 domain-containing protein
Location	Cucurbita_argyrosperma_scaffold_016 : 1214433 .. 1215743 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAAATATGTGTCGGAAGAAATTGGTAAATAAAATTTAATATTTTTAGAATTATTCTTATTATTATTTTCTTAAAACCTTTTTTTTATATATATTCGTTTCAAACGACCCCTCATTTACGTCCCTATCTCAAGAATTAATGAACTGAAGAACGTACCACTGAGGGTTTCATTCTCCGCTTGCTCCGGTTTCTTACAGGTTACGAAACAATAATCTTCCTCTTAACCTTCTCTTCCACATTTTCGTTTCCGATCAACGAGTACCGACCGGAAGAAAACCAGAAAAAGTGCGGGAAATCGCAAGTAAATGTGAGTGTTGATTGCATTGCGTCTTCTAATCTGTTAATTTTTTTTTTTCCGATCATCTAATCATGGATTTTATCCGATTCTCCCCTTTCCGCAGTCACATTTGGATTTTGCAAGTGATTTGTACTGAAAAGAGGTCTCCAGATGCAATCGCAGGAGAAACCTCCGACAGAGCCTACAGAAATGCAGCCGCAAAATAGTAGAATTTTGCCGCTCTCAGGCAAACCCTACCATGGCGTTATTCTTTCTAAGTCGCATGTCGCTCCCATATGTAATATGGTAAGTTCTCGCTCTCATGGAAATCACTCAGAAATTTTAGTAACAGTTATAGTTATAAACGGAATTGGATTGTGCGTGCTTGCATTGTCAAAACCACTAGATTTTACGGCCAATCCAGGAAGTATGTGGCTGGTTTGATCACCAATAGTTTTGGTATCAAGATTAGCCAGTGTGAAAACTATTAGAAAACCAGTTCATAATAAAAGTTTTGTAAAAATAAGTGTTCGTTTAGTATTTGATTTTCCTTAGAAGAATTAACTGAAAGATTGTCATGAACTTTTAGAATCATTCAATCTCATGATTATTAGGACTTGACATTACCAAATTCTTGGCTACTACCAGAGGCTCAAATTAGCCTATTTTTCAGCATATATATGAATCAGCTTAATTGTAAGGGACTATCATATCTTCATTTGTAGTTCATGCCAGCCAAATTTCATTCTGTTTTACCTGCTATTATGATCCCTGCGGTTCTTTACTGTGAGGGAAAGAAATGGAAGATCGATTATTATGGGAATCGACGCGGTAAAGCCCTTGACACGAAACAGTGGAGGAAATTTGTTAATGATAATCATCTCAAGTGTGGAGATGCTTGTGTATTTGAGCTAATAGAATGCAGCAGCAGCGTAATCAAGTTCAGAGTTCAAATTCTCAGAGGCGACATCCCTTTTGAGCTGCACGAAAAGTTCAGCGGGGAATCTAGAAACACTCCTATACTCATTGACTAG

mRNA sequence

TAAAATATGTGTCGGAAGAAATTGGTAAATAAAATTTAATATTTTTAGAATTATTCTTATTATTATTTTCTTAAAACCTTTTTTTTATATATATTCGTTTCAAACGACCCCTCATTTACGTCCCTATCTCAAGAATTAATGAACTGAAGAACGTACCACTGAGGGTTTCATTCTCCGCTTGCTCCGGTTTCTTACAGGTTACGAAACAATAATCTTCCTCTTAACCTTCTCTTCCACATTTTCGTTTCCGATCAACGAGTACCGACCGGAAGAAAACCAGAAAAAGTGCGGGAAATCGCAAGTAAATTCACATTTGGATTTTGCAAGTGATTTGTACTGAAAAGAGGTCTCCAGATGCAATCGCAGGAGAAACCTCCGACAGAGCCTACAGAAATGCAGCCGCAAAATAGTAGAATTTTGCCGCTCTCAGGCAAACCCTACCATGGCGTTATTCTTTCTAAGTCGCATGTCGCTCCCATATGTAATATGTTCATGCCAGCCAAATTTCATTCTGTTTTACCTGCTATTATGATCCCTGCGGTTCTTTACTGTGAGGGAAAGAAATGGAAGATCGATTATTATGGGAATCGACGCGGTAAAGCCCTTGACACGAAACAGTGGAGGAAATTTGTTAATGATAATCATCTCAAGTGTGGAGATGCTTGTGTATTTGAGCTAATAGAATGCAGCAGCAGCGTAATCAAGTTCAGAGTTCAAATTCTCAGAGGCGACATCCCTTTTGAGCTGCACGAAAAGTTCAGCGGGGAATCTAGAAACACTCCTATACTCATTGACTAG

Coding sequence (CDS)

ATGCAATCGCAGGAGAAACCTCCGACAGAGCCTACAGAAATGCAGCCGCAAAATAGTAGAATTTTGCCGCTCTCAGGCAAACCCTACCATGGCGTTATTCTTTCTAAGTCGCATGTCGCTCCCATATGTAATATGTTCATGCCAGCCAAATTTCATTCTGTTTTACCTGCTATTATGATCCCTGCGGTTCTTTACTGTGAGGGAAAGAAATGGAAGATCGATTATTATGGGAATCGACGCGGTAAAGCCCTTGACACGAAACAGTGGAGGAAATTTGTTAATGATAATCATCTCAAGTGTGGAGATGCTTGTGTATTTGAGCTAATAGAATGCAGCAGCAGCGTAATCAAGTTCAGAGTTCAAATTCTCAGAGGCGACATCCCTTTTGAGCTGCACGAAAAGTTCAGCGGGGAATCTAGAAACACTCCTATACTCATTGACTAG

Protein sequence

MQSQEKPPTEPTEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMFMPAKFHSVLPAIMIPAVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKCGDACVFELIECSSSVIKFRVQILRGDIPFELHEKFSGESRNTPILID

Homology

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BLAST of Carg06365 vs. NCBI nr
Match: XP_023539026.1 (B3 domain-containing protein Os04g0386900-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 310.5 bits (794), Expect = 3.1e-81
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 0


Query: 1   MQSQEKPPTEPTEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMFMPAKFHSVLPAIMI 60
           MQSQEKPPTEPTEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMFMPAKFHSVLPAIMI
Sbjct: 1   MQSQEKPPTEPTEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMFMPAKFHSVLPAIMI 60

Query: 61  PAVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKCGDACVFELIECSSSVIKFRV 120
           PAVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKCGDACVFELIECSSSVIKFRV
Sbjct: 61  PAVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKCGDACVFELIECSSSVIKFRV 120

Query: 121 QILRGDIPFELHEKFSGESRNTPILID 148
           QILRGDIPFELHEKFSGESRNTPILID
Sbjct: 121 QILRGDIPFELHEKFSGESRNTPILID 147

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BLAST of Carg06365 vs. NCBI nr
Match: XP_022974195.1 (B3 domain-containing protein Os04g0386900-like [Cucurbita maxima] >XP_022974196.1 B3 domain-containing protein Os04g0386900-like [Cucurbita maxima] >XP_022974197.1 B3 domain-containing protein Os04g0386900-like [Cucurbita maxima] >XP_022975683.1 B3 domain-containing protein Os04g0386900-like [Cucurbita maxima] >XP_022975684.1 B3 domain-containing protein Os04g0386900-like [Cucurbita maxima] >XP_022975685.1 B3 domain-containing protein Os04g0386900-like [Cucurbita maxima])

HSP 1 Score: 308.5 bits (789), Expect = 1.2e-80
Identity = 145/147 (98.64%), Postives = 147/147 (100.00%), Query Frame = 0


Query: 1   MQSQEKPPTEPTEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMFMPAKFHSVLPAIMI 60
           MQSQEKPPTEPTEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMF+PAKFHSVLPAIMI
Sbjct: 1   MQSQEKPPTEPTEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMFLPAKFHSVLPAIMI 60

Query: 61  PAVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKCGDACVFELIECSSSVIKFRV 120
           PAVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKCGDACVFELIECSSSV+KFRV
Sbjct: 61  PAVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKCGDACVFELIECSSSVLKFRV 120

Query: 121 QILRGDIPFELHEKFSGESRNTPILID 148
           QILRGDIPFELHEKFSGESRNTPILID
Sbjct: 121 QILRGDIPFELHEKFSGESRNTPILID 147

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BLAST of Carg06365 vs. NCBI nr
Match: XP_022941967.1 (B3 domain-containing protein Os04g0386900-like [Cucurbita moschata] >XP_022941973.1 B3 domain-containing protein Os04g0386900-like [Cucurbita moschata])

HSP 1 Score: 307.0 bits (785), Expect = 3.5e-80
Identity = 145/147 (98.64%), Postives = 146/147 (99.32%), Query Frame = 0


Query: 1   MQSQEKPPTEPTEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMFMPAKFHSVLPAIMI 60
           MQSQEKPP EPTEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMF+PAKFHSVLPAIMI
Sbjct: 1   MQSQEKPPPEPTEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMFLPAKFHSVLPAIMI 60

Query: 61  PAVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKCGDACVFELIECSSSVIKFRV 120
           PAVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKCGDACVFELIECSSSVIKFRV
Sbjct: 61  PAVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKCGDACVFELIECSSSVIKFRV 120

Query: 121 QILRGDIPFELHEKFSGESRNTPILID 148
           QILRGDIPFELHEKFSGESRNTPILID
Sbjct: 121 QILRGDIPFELHEKFSGESRNTPILID 147

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BLAST of Carg06365 vs. NCBI nr
Match: XP_022147119.1 (B3 domain-containing protein Os04g0386900-like [Momordica charantia])

HSP 1 Score: 245.4 bits (625), Expect = 1.2e-61
Identity = 113/147 (76.87%), Postives = 130/147 (88.44%), Query Frame = 0


Query: 1   MQSQEKPPTEPTEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMFMPAKFHSVLPAIMI 60
           MQSQEKPP+E T M+P+N  I PLS KP+HGVIL+KSHVAPI NM +PAKFHSVLPAI+I
Sbjct: 1   MQSQEKPPSEHTTMEPRNYEIFPLSDKPFHGVILAKSHVAPIYNMTLPAKFHSVLPAIVI 60

Query: 61  PAVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKCGDACVFELIECSSSVIKFRV 120
             VLYC GK+W +DYYGNRRGK+LDT+ WRKFVNDNHLK GDACVFEL+ECSSS +KFRV
Sbjct: 61  HGVLYCGGKEWTVDYYGNRRGKSLDTRHWRKFVNDNHLKSGDACVFELMECSSSTLKFRV 120

Query: 121 QILRGDIPFELHEKFSGESRNTPILID 148
           QILRGDIP +LH+KFSGES++TPI ID
Sbjct: 121 QILRGDIPVQLHDKFSGESKDTPIKID 147

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BLAST of Carg06365 vs. NCBI nr
Match: XP_011650806.1 (PREDICTED: B3 domain-containing protein Os04g0386900-like [Cucumis sativus] >KGN56625.1 hypothetical protein Csa_3G126890 [Cucumis sativus])

HSP 1 Score: 238.8 bits (608), Expect = 1.2e-59
Identity = 111/147 (75.51%), Postives = 126/147 (85.71%), Query Frame = 0


Query: 1   MQSQEKPPTEPTEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMFMPAKFHSVLPAIMI 60
           MQS  KPPTE   M+PQN   +PLSGKPYH  ILSKSHVAPI N+ +PAKFHS+LPAI+I
Sbjct: 1   MQSARKPPTELPTMEPQNGETMPLSGKPYHAFILSKSHVAPIYNLVLPAKFHSILPAIVI 60

Query: 61  PAVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKCGDACVFELIECSSSVIKFRV 120
           PAVL C GKKWKIDY+GNRRGKALD+KQWRKFVNDN LK GDA VFEL+ECSSS++KFRV
Sbjct: 61  PAVLLCRGKKWKIDYHGNRRGKALDSKQWRKFVNDNCLKSGDAIVFELLECSSSILKFRV 120

Query: 121 QILRGDIPFELHEKFSGESRNTPILID 148
           QIL GDIP ELH+KFSGE++ TPI +D
Sbjct: 121 QILSGDIPLELHDKFSGETKETPIHLD 147

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BLAST of Carg06365 vs. TAIR10
Match: AT4G33280.1 (AP2/B3-like transcriptional factor family protein)

HSP 1 Score: 52.8 bits (125), Expect = 2.1e-07
Identity = 32/100 (32.00%), Postives = 51/100 (51.00%), Query Frame = 0


Query: 32  VILSKSHVAPICNMFMPAKFHSVLPAIMI---PAVLYCEGKKW--KIDYYGNRRGKALDT 91
           V + +SHV   C + +P K+   +  ++I     V+  +  KW  K + +G R    + T
Sbjct: 225 VFMKRSHVVSKCFLTIPYKW--CVKNMLITRQEVVMQVDQTKWEMKFNIFGARGSGGIST 284

Query: 92  KQWRKFVNDNHLKCGDACVFELIECSSSVIKFRVQILRGD 127
             W+KFV DN+L+ GD CVFE     +  +   V I RG+
Sbjct: 285 -GWKKFVQDNNLREGDVCVFEPANSETKPLHLNVYIFRGE 321

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BLAST of Carg06365 vs. TAIR10
Match: AT1G49480.1 (related to vernalization1 1)

HSP 1 Score: 43.9 bits (102), Expect = 1.0e-04
Identity = 30/97 (30.93%), Postives = 49/97 (50.52%), Query Frame = 0


Query: 28  PYHGVILSKSHVAPICNMFMPAKF-HSVLPAIMIPAVLYCEGKKWKIDYYGNRRGKALDT 87
           PY  V+L  S++   C M++P+ F    L  I     L    K+W +     + G+A  +
Sbjct: 127 PYFRVVLRPSYLYRGCIMYLPSGFAEKYLSGISGFIKLQLGEKQWPVRCL-YKAGRAKFS 186

Query: 88  KQWRKFVNDNHLKCGDACVFELIECSSSVIK---FRV 121
           + W +F  +N++  GD CVFEL+     V++   FRV
Sbjct: 187 QGWYEFTLENNIGEGDVCVFELLRTRDFVLEVTAFRV 222

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BLAST of Carg06365 vs. TAIR10
Match: AT3G18990.1 (AP2/B3-like transcriptional factor family protein)

HSP 1 Score: 43.9 bits (102), Expect = 1.0e-04
Identity = 30/97 (30.93%), Postives = 49/97 (50.52%), Query Frame = 0


Query: 28  PYHGVILSKSHVAPICNMFMPAKF-HSVLPAIMIPAVLYCEGKKWKIDYYGNRRGKALDT 87
           P+  V+L  S++   C M++P+ F    L  I     +    K+W +     + G+A  +
Sbjct: 242 PFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGISGFIKVQLAEKQWPVRCL-YKAGRAKFS 301

Query: 88  KQWRKFVNDNHLKCGDACVFELIECSSSVIK---FRV 121
           + W +F  +N+L  GD CVFEL+     V+K   FRV
Sbjct: 302 QGWYEFTLENNLGEGDVCVFELLRTRDFVLKVTAFRV 337

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BLAST of Carg06365 vs. Swiss-Prot
Match: sp|Q7XLP4|Y4869_ORYSJ (B3 domain-containing protein Os04g0386900 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0386900 PE=2 SV=3)

HSP 1 Score: 100.1 bits (248), Expect = 2.1e-20
Identity = 52/130 (40.00%), Postives = 73/130 (56.15%), Query Frame = 0


Query: 21  ILPLSGKPYHGVILSKSHVAPICNMFMPAKFHSVLPAIMIPAVLYCEGKKWKIDYYGNRR 80
           +LPL GKPY   I+ KSHV P   + +P  F  +LP+   PA L   G+ W + + G R 
Sbjct: 84  VLPLLGKPYFTCIMCKSHVQPPFQVVVPRSFAPLLPSRTTPATLSWRGRSWGMRFTGGRL 143

Query: 81  GKALDTKQWRKFVNDNHLKCGDACVFELIECSSSV---IKFRVQILRGDIPFELHEKFSG 140
            + L+   WR F  DN L+ GD CVFEL+         ++FRVQ+LR +IP  +  +  G
Sbjct: 144 IQRLEA-GWRGFAVDNDLRLGDGCVFELLVGGGGEQERVEFRVQVLRAEIPARIRGRAGG 203

Query: 141 ESRNTPILID 148
            +  TPI+ID
Sbjct: 204 YTSATPIVID 212

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BLAST of Carg06365 vs. Swiss-Prot
Match: sp|Q9LHY9|Y6112_ORYSJ (B3 domain-containing protein Os06g0112300 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0112300 PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.4e-16
Identity = 49/125 (39.20%), Postives = 72/125 (57.60%), Query Frame = 0


Query: 25  SGKPYHGVILSKSHVAPICNMFMPAKFHSVL--PAIMIPAVLYCEGKKWKIDYYGNRRGK 84
           +G P+   +++KSH+ P   M++P +F   L  P     AVL+  GK W   Y G+ + K
Sbjct: 51  AGNPFFTALIAKSHLHPKFQMWIPPRFQHRLAEPEARTAAVLHSGGKSWATSYCGHLKMK 110

Query: 85  ALDTKQWRKFVNDNHLKCGDACVFELIEC-SSSVIKFRVQILRGDIPFELHEKFSGESRN 144
            LD   W +F  DN L  GDACVFEL+   ++  ++F+VQILRG +P E+     G + +
Sbjct: 111 KLDA-GWSEFAVDNRLLVGDACVFELVAMGAAGGLEFQVQILRGGLPAEVVTS-KGLTSD 170

Query: 145 TPILI 147
            PILI
Sbjct: 171 QPILI 173

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BLAST of Carg06365 vs. Swiss-Prot
Match: sp|Q8RYD1|REM16_ARATH (B3 domain-containing protein REM16 OS=Arabidopsis thaliana OX=3702 GN=REM16 PE=2 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 3.9e-06
Identity = 32/100 (32.00%), Postives = 51/100 (51.00%), Query Frame = 0


Query: 32  VILSKSHVAPICNMFMPAKFHSVLPAIMI---PAVLYCEGKKW--KIDYYGNRRGKALDT 91
           V + +SHV   C + +P K+   +  ++I     V+  +  KW  K + +G R    + T
Sbjct: 225 VFMKRSHVVSKCFLTIPYKW--CVKNMLITRQEVVMQVDQTKWEMKFNIFGARGSGGIST 284

Query: 92  KQWRKFVNDNHLKCGDACVFELIECSSSVIKFRVQILRGD 127
             W+KFV DN+L+ GD CVFE     +  +   V I RG+
Sbjct: 285 -GWKKFVQDNNLREGDVCVFEPANSETKPLHLNVYIFRGE 321

[Close]

BLAST of Carg06365 vs. Swiss-Prot
Match: sp|Q6AV21|Y3982_ORYSJ (B3 domain-containing protein Os03g0619800 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0619800 PE=3 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 3.3e-05
Identity = 35/95 (36.84%), Postives = 48/95 (50.53%), Query Frame = 0


Query: 19  SRILPLSGK-PYHGVILSKSHVAPICNMFMPAKFHSVLPAIMIPAVLYCEGKKWKIDYYG 78
           S++    GK  + G+ LS  + A     ++P K H  L       VL C+G  W+I+   
Sbjct: 430 SKLAGSGGKGKFRGLELSSRYAA----SYLPDKNHQTL-------VLQCKGMIWQINLVV 489

Query: 79  NRR---GKA-LDTKQWRKFVNDNHLKCGDACVFEL 109
            RR   GK    T  WRKF +DN L+ GD C+FEL
Sbjct: 490 RRRYTKGKRWFLTAGWRKFAHDNRLRVGDFCLFEL 513

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BLAST of Carg06365 vs. TrEMBL
Match: tr|A0A0A0L3V3|A0A0A0L3V3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G126890 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 7.7e-60
Identity = 111/147 (75.51%), Postives = 126/147 (85.71%), Query Frame = 0


Query: 1   MQSQEKPPTEPTEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMFMPAKFHSVLPAIMI 60
           MQS  KPPTE   M+PQN   +PLSGKPYH  ILSKSHVAPI N+ +PAKFHS+LPAI+I
Sbjct: 1   MQSARKPPTELPTMEPQNGETMPLSGKPYHAFILSKSHVAPIYNLVLPAKFHSILPAIVI 60

Query: 61  PAVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKCGDACVFELIECSSSVIKFRV 120
           PAVL C GKKWKIDY+GNRRGKALD+KQWRKFVNDN LK GDA VFEL+ECSSS++KFRV
Sbjct: 61  PAVLLCRGKKWKIDYHGNRRGKALDSKQWRKFVNDNCLKSGDAIVFELLECSSSILKFRV 120

Query: 121 QILRGDIPFELHEKFSGESRNTPILID 148
           QIL GDIP ELH+KFSGE++ TPI +D
Sbjct: 121 QILSGDIPLELHDKFSGETKETPIHLD 147

[Close]

BLAST of Carg06365 vs. TrEMBL
Match: tr|A0A2P6RZ46|A0A2P6RZ46_ROSCH (Putative transcription factor B3-Domain family OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0147401 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 4.9e-30
Identity = 65/136 (47.79%), Postives = 89/136 (65.44%), Query Frame = 0


Query: 12  TEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMFMPAKFHSVLPAIMIPAVLYCEGKKW 71
           T +Q       PLSGKPY  +IL+K+HV P   + +PAK H +LP+   P VL   GK W
Sbjct: 11  TTIQLHGEEFWPLSGKPYFDIILAKTHVKPYYKLGIPAKLHPILPSCSFPTVLTFAGKSW 70

Query: 72  KIDYYG-NRRGKALDTKQWRKFVNDNHLKCGDACVFELIECSSSVIKFRVQILRGDIPFE 131
           ++   G N++ K LD + W+ F++DN+LK GD CVFE++ECSS+ +  RVQILRGDIP E
Sbjct: 71  EMTCDGSNKKHKGLDKESWKAFIDDNNLKAGDGCVFEVMECSSTKLVLRVQILRGDIPAE 130

Query: 132 LHEKFSGESRNTPILI 147
           L EK  G+    PI++
Sbjct: 131 LLEKEKGDEAEKPIIL 146

[Close]

BLAST of Carg06365 vs. TrEMBL
Match: tr|A0A2R6RD19|A0A2R6RD19_ACTCH (B3 domain-containing protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc07723 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 4.9e-30
Identity = 65/138 (47.10%), Postives = 91/138 (65.94%), Query Frame = 0


Query: 10  EPTEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMFMPAKFHSVLPAIMIPAVLYCEGK 69
           +P   + ++    PLSGKPY  V + KSH+ P+  +  P K +S+LP   +P VL   GK
Sbjct: 45  DPKTTEFEDDEFWPLSGKPYFHVFVVKSHLKPLYQLVFPKKMYSLLPCSRVPVVLTYCGK 104

Query: 70  KWKIDYYGNRRGKALDTKQWRKFVNDNHLKCGDACVFELIECSSSVIKFRVQILRGDIPF 129
           KW++ YYG+   K  D + W+ F  DN LK GDACVFE++E SSS +KFRVQILRG+ P 
Sbjct: 105 KWEMVYYGDSNPKRFD-RNWKNFAIDNDLKLGDACVFEIVEISSSNLKFRVQILRGEFPS 164

Query: 130 ELHEKFSGESRNTPILID 148
           +L E+  GE+ +TPI++D
Sbjct: 165 QLMERVKGEASDTPIIVD 181

[Close]

BLAST of Carg06365 vs. TrEMBL
Match: tr|A0A251QDS6|A0A251QDS6_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G100300 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 4.1e-29
Identity = 61/125 (48.80%), Postives = 87/125 (69.60%), Query Frame = 0


Query: 23  PLSGKPYHGVILSKSHVAPICNMFMPAKFHSVLPAIMIPAVLYCEGKKWKIDYYGNRRGK 82
           PLSGKP+  V+L+K+ + P+C + +P KF + LP+  IP VL   GK W++ Y+G+   K
Sbjct: 25  PLSGKPFFDVVLTKTSIKPMCQLVVPGKFSATLPSCSIPTVLTFRGKNWEMTYHGSSNYK 84

Query: 83  ALDTKQWRKFVNDNHLKCGDACVFELIECSSSVIKFRVQILRGDIPFELHEKFSGESRNT 142
            LD   W+ F  DN+LK GDACVFE +ECSS+ + FRVQILRGDIP E  +K  G++ + 
Sbjct: 85  RLD--NWKAFAIDNNLKVGDACVFEQLECSSTRLVFRVQILRGDIPSEFLDKLDGDNVDA 144

Query: 143 PILID 148
           PI+++
Sbjct: 145 PIVLE 147

[Close]

BLAST of Carg06365 vs. TrEMBL
Match: tr|M5X861|M5X861_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa025386mg PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 4.1e-29
Identity = 61/125 (48.80%), Postives = 87/125 (69.60%), Query Frame = 0


Query: 23  PLSGKPYHGVILSKSHVAPICNMFMPAKFHSVLPAIMIPAVLYCEGKKWKIDYYGNRRGK 82
           PLSGKP+  V+L+K+ + P+C + +P KF + LP+  IP VL   GK W++ Y+G+   K
Sbjct: 27  PLSGKPFFDVVLTKTSIKPMCQLVVPGKFSATLPSCSIPTVLTFRGKNWEMTYHGSSNYK 86

Query: 83  ALDTKQWRKFVNDNHLKCGDACVFELIECSSSVIKFRVQILRGDIPFELHEKFSGESRNT 142
            LD   W+ F  DN+LK GDACVFE +ECSS+ + FRVQILRGDIP E  +K  G++ + 
Sbjct: 87  RLD--NWKAFAIDNNLKVGDACVFEQLECSSTRLVFRVQILRGDIPSEFLDKLDGDNVDA 146

Query: 143 PILID 148
           PI+++
Sbjct: 147 PIVLE 149

The following BLAST results are available for this feature:

BLAST of Carg06365 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023539026.1	3.1e-81	100.00	B3 domain-containing protein Os04g0386900-like [Cucurbita pepo subsp. pepo]	[more]
XP_022974195.1	1.2e-80	98.64	B3 domain-containing protein Os04g0386900-like [Cucurbita maxima] >XP_022974196....	[more]
XP_022941967.1	3.5e-80	98.64	B3 domain-containing protein Os04g0386900-like [Cucurbita moschata] >XP_02294197...	[more]
XP_022147119.1	1.2e-61	76.87	B3 domain-containing protein Os04g0386900-like [Momordica charantia]	[more]
XP_011650806.1	1.2e-59	75.51	PREDICTED: B3 domain-containing protein Os04g0386900-like [Cucumis sativus] >KGN...	[more]

BLAST of Carg06365 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G33280.1	2.1e-07	32.00	AP2/B3-like transcriptional factor family protein	[more]
AT1G49480.1	1.0e-04	30.93	related to vernalization1 1	[more]
AT3G18990.1	1.0e-04	30.93	AP2/B3-like transcriptional factor family protein	[more]

BLAST of Carg06365 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q7XLP4\|Y4869_ORYSJ	2.1e-20	40.00	B3 domain-containing protein Os04g0386900 OS=Oryza sativa subsp. japonica OX=399...	[more]
sp\|Q9LHY9\|Y6112_ORYSJ	2.4e-16	39.20	B3 domain-containing protein Os06g0112300 OS=Oryza sativa subsp. japonica OX=399...	[more]
sp\|Q8RYD1\|REM16_ARATH	3.9e-06	32.00	B3 domain-containing protein REM16 OS=Arabidopsis thaliana OX=3702 GN=REM16 PE=2...	[more]
sp\|Q6AV21\|Y3982_ORYSJ	3.3e-05	36.84	B3 domain-containing protein Os03g0619800 OS=Oryza sativa subsp. japonica OX=399...	[more]

BLAST of Carg06365 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L3V3\|A0A0A0L3V3_CUCSA	7.7e-60	75.51	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G126890 PE=4 SV=1	[more]
tr\|A0A2P6RZ46\|A0A2P6RZ46_ROSCH	4.9e-30	47.79	Putative transcription factor B3-Domain family OS=Rosa chinensis OX=74649 GN=Rch...	[more]
tr\|A0A2R6RD19\|A0A2R6RD19_ACTCH	4.9e-30	47.10	B3 domain-containing protein OS=Actinidia chinensis var. chinensis OX=1590841 GN...	[more]
tr\|A0A251QDS6\|A0A251QDS6_PRUPE	4.1e-29	48.80	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G100300 PE=4 SV=1	[more]
tr\|M5X861\|M5X861_PRUPE	4.1e-29	48.80	Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa025386m...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR015300	DNA-bd_pseudobarrel_sf
IPR003340	B3_DNA-bd

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg06365-RA	Carg06365-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003340	B3 DNA binding domain	SMART	SM01019	B3_2	coord: 34..126 e-value: 0.0033 score: 23.9
IPR003340	B3 DNA binding domain	PFAM	PF02362	B3	coord: 34..115 e-value: 7.4E-12 score: 44.9
IPR003340	B3 DNA binding domain	PROSITE	PS50863	B3	coord: 67..126 score: 10.785
IPR003340	B3 DNA binding domain	CDD	cd10017	B3_DNA	coord: 33..124 e-value: 9.35355E-17 score: 70.4345
IPR015300	DNA-binding pseudobarrel domain superfamily	GENE3D	G3DSA:2.40.330.10		coord: 13..126 e-value: 9.1E-20 score: 72.6
IPR015300	DNA-binding pseudobarrel domain superfamily	SUPERFAMILY	SSF101936	DNA-binding pseudobarrel domain	coord: 26..124
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	PANTHER	PTHR31391:SF15	SUBFAMILY NOT NAMED	coord: 14..146
None	No IPR available	PANTHER	PTHR31391	FAMILY NOT NAMED	coord: 14..146

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg06365	Cla021334	Watermelon (97103) v1	carwmB0961
Carg06365	Csa3G126890	Cucumber (Chinese Long) v2	carcuB0975
Carg06365	MELO3C006216	Melon (DHL92) v3.5.1	carmeB0941
Carg06365	ClCG05G002510	Watermelon (Charleston Gray)	carwcgB0935
Carg06365	CSPI03G09800	Wild cucumber (PI 183967)	carcpiB0998
Carg06365	Cucsa.257390	Cucumber (Gy14) v1	carcgyB1077
Carg06365	CmaCh06G011520	Cucurbita maxima (Rimu)	carcmaB1325
Carg06365	CmoCh06G011810	Cucurbita moschata (Rifu)	carcmoB1288
Carg06365	Lsi05G019330	Bottle gourd (USVL1VR-Ls)	carlsiB878
Carg06365	Cp4.1LG08g02060	Cucurbita pepo (Zucchini)	carcpeB1333
Carg06365	CsGy3G009890	Cucumber (Gy14) v2	carcgybB0948
Carg06365	MELO3C006216.2	Melon (DHL92) v3.6.1	carmedB0947
Carg06365	CsaV3_3G009950	Cucumber (Chinese Long) v3	carcucB1003
Carg06365	Cla97C05G083010	Watermelon (97103) v2	carwmbB1008
Carg06365	Bhi01G000055	Wax gourd	carwgoB1118

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg06365	Cucurbita pepo (Zucchini)	carcpeB1328
Carg06365	Cucurbita pepo (Zucchini)	carcpeB1331
Carg06365	Wild cucumber (PI 183967)	carcpiB0999
Carg06365	Cucumber (Chinese Long) v2	carcuB0976
Carg06365	Cucumber (Chinese Long) v3	carcucB1004
Carg06365	Bottle gourd (USVL1VR-Ls)	carlsiB875
Carg06365	Melon (DHL92) v3.5.1	carmeB0938
Carg06365	Melon (DHL92) v3.6.1	carmedB0944
Carg06365	Watermelon (Charleston Gray)	carwcgB0937
Carg06365	Watermelon (97103) v1	carwmB0963
Carg06365	Watermelon (97103) v2	carwmbB1010
Carg06365	Wax gourd	carwgoB1113
Carg06365	Silver-seed gourd	carcarB266
Carg06365	Silver-seed gourd	carcarB549
Carg06365	Cucumber (Gy14) v2	carcgybB0949
Carg06365	Cucumber (Gy14) v1	carcgyB1079
Carg06365	Cucurbita maxima (Rimu)	carcmaB1319
Carg06365	Cucurbita maxima (Rimu)	carcmaB1320
Carg06365	Cucurbita maxima (Rimu)	carcmaB1321
Carg06365	Cucurbita moschata (Rifu)	carcmoB1284
Carg06365	Cucurbita moschata (Rifu)	carcmoB1285