Cp4.1LG08g02060 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG08g02060
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionB3 DNA-binding domain protein
LocationCp4.1LG08 : 3011780 .. 3014178 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CGAACGACCCCTCATTTACGTCCCTATCTCAAGAATTAATGAACTGAAGAACGTACCACTGAGGGTTTCATTCTCCGCTTGCTCCGGTTTCTTACAGGTTACGAAACAATAATCTTCCTCTTAACCTTCTCTTCCACATTTTCGTTTCCGATCAACGAGTACCGACCGGAAGAAAACCAGAAAAAGTGCAGGAAATCGCAAGTAAATGTGAGTGTTGATTGCATTGCGTCTTCTAATCTGTTATTTTTTTTTTCGATCATCTAATCATGGATTTTATCCGATTCTCCCCTTTCCGCAGTCACATTTGGATTTTGCAAGTGATTTGTACTGAAAAGAGGTCTCCAGATGCAATCGCAGGAGAAACCTCCGACAGAGCCTACAGAAATGCAGCCGCAAAATAGTAGAATTTTGCCGCTCTCAGGCAAACCCTACCATGGCGTTATTCTTTCTAAGTCGCATGTCGCTCCCATATGTAATATGGTAAGTTCTCGCTCTCATGGAAATCACTCAGAAATTTTAGTAACAGTTATAGTTATAAACGGAATTGGATTGTGCGTGCTTGCATTGTCAAAACCACTAGATTTTACGGCCAATCCAGGAAGTATGTGGCTGGTTTGATCACCAATAGTTTTGGTATCAAGATTAGCCAGTGTGAAAACTATTAGAAAACCAGTTCATAATAAAAGTTTTGTAAAAATAAGTGTTCGTTTAGTATTTGATTTTCCTTAGAAGAATTAACTGAAAGATTGTCATGAACTTTTAGAATCATTCAATCTCATGATTATTAGGACTTGACATTACCAAATTCTGGGCTACTACCAGAGGCTCAAATTAGCCTATTTTTCAGCATATATATGAATCAGCTTAATTGTAAGGGACTATCATATCTTCATTTGTAGTTCATGCCAGCCAAATTTCATTCTGTTTTACCTGCTATTATGATCCCTGCGGTTCTTTACTGTGAGGGAAAGAAATGGAAGATCGATTATTATGGGAATCGACGCGGTAAAGCCCTTGACACGAAACAGTGGAGGAAATTTGTTAATGATAATCATCTCAAGTGTGGAGATGCTTGTGTATTTGAGCTAATAGAATGCAGCAGCAGCGTAATCAAGTTCAGAGTTCAAATTCTCAGAGGCGACATCCCTTTTGAGCTGCACGAAAAGTTCAGCGGGGAATCTAGAAACACTCCTATACTCATTGACTAGCTAGCCCCTTCTGTGGTCTCTTAGTGTTCAGTAGTTCGAACTTGTCGACAGCATATATGGTTTGGAATCGGACGACCTGTTTGATAACCGTAAGTGGATATGTATGTTTATCACTAATGCCTATGTCTTAGTCAGGTACTTTAGTAGGGAGAAGGAACTGGTTCATTAAGGAGAGGTTAGCACTCTCAAATTCGCTGAAGTTTGAATATTACATTGTCGTTCGTGGTATCTTCGTTCTTTTATTTTGTGTTCATCTTTGTTAGGGTAAAAACAGAAGACGTTTTCGAAATTTCATGGTTTTTTTTTTTTTTCATTTTAGATCCATTCTCTTTCTAAAGGAAATCATTCAGTCCATGTTTTAGAAAGCAGGGGGAAACCATTTAAAGAACATCCGTTTGCAGTGTGTTGCTGCAGGCCTGCAACTTCATTGCTTATGCATGAGAATACTAGACATCATGGCATGCATGAAAGCATAAATTTGACTCATTATATTTCAGCATTATATTTTCTTGTTAGTATGAATGTTCTTGGTTTAAGATGATGTTATTTGAACAGGATCTGCGTCGTTGAGTTCTAAAGACGCTCCCATGGTAAGAATTTCACTACGATATCTGAATGTCGTTTAGCTAGATTACTGAACCTTTCATAAGCTTTGGATACCTGCTTTTAGGTTCCATATTTAGTCATCCTAAAGATGCTAGGAAGTGATATCAATCAAAAACTAATTCCAGGTGTGGATTAGAACAGGACCTATTCGAATCTGTTCTGTAAGTTGTACAAATCTTCGAGTTCTAAGGAAAAACTTTTAACCCCCGTGAACTCGATCTCCGAAGGAGTCGTCACTCGTCCTGAATATTTTGCTAGATACAATAGTTCAACCTAGATGGCTCGGTTATGCCAATTTTGACAAAGGGTATATTGGATAGTTTTCTCGTTATGTGAATGTGCCCGACCTGTGTTCATCGGTCTTTTTTATAAGAAACAATTTCATTTGGATGGTTGAAATCTCGAAATCTCAATCAATTTCCCTCGTATTCCTTTGGTCAGTTTGTTTGCTAAATCTTGATGCTATAGATCGTAGTGTCCTTTTTGCAGATTGTTCAAACATCAGCAGCATCATCATTTTCCATACATATAACCATTGTTTGACATTGTCTCTGGTTTTGGTGTGAGAACTTTCAGAAATCCTGA

mRNA sequence

CGAACGACCCCTCATTTACGTCCCTATCTCAAGAATTAATGAACTGAAGAACGTACCACTGAGGGTTTCATTCTCCGCTTGCTCCGGTTTCTTACAGGTTACGAAACAATAATCTTCCTCTTAACCTTCTCTTCCACATTTTCGTTTCCGATCAACGAGTACCGACCGGAAGAAAACCAGAAAAAGTGCAGGAAATCGCAAGTAAATTCACATTTGGATTTTGCAAGTGATTTGTACTGAAAAGAGGTCTCCAGATGCAATCGCAGGAGAAACCTCCGACAGAGCCTACAGAAATGCAGCCGCAAAATAGTAGAATTTTGCCGCTCTCAGGCAAACCCTACCATGGCGTTATTCTTTCTAAGTCGCATGTCGCTCCCATATGTAATATGTTCATGCCAGCCAAATTTCATTCTGTTTTACCTGCTATTATGATCCCTGCGGTTCTTTACTGTGAGGGAAAGAAATGGAAGATCGATTATTATGGGAATCGACGCGGTAAAGCCCTTGACACGAAACAGTGGAGGAAATTTGTTAATGATAATCATCTCAAGTGTGGAGATGCTTGTGTATTTGAGCTAATAGAATGCAGCAGCAGCGTAATCAAGTTCAGAGTTCAAATTCTCAGAGGCGACATCCCTTTTGAGCTGCACGAAAAGTTCAGCGGGGAATCTAGAAACACTCCTATACTCATTGACTAGCTAGCCCCTTCTGTGGTCTCTTAGTGTTCAGTAGTTCGAACTTGTCGACAGCATATATGGTTTGGAATCGGACGACCTGTTTGATAACCGTAAGTGGATATGTATGTTTATCACTAATGCCTATGTCTTAGTCAGGTACTTTAGTAGGGAGAAGGAACTGGTTCATTAAGGAGAGGTTAGCACTCTCAAATTCGCTGAAGTTTGAATATTACATTGTCGTTCGTGGTATCTTCGTTCTTTTATTTTGTGTTCATCTTTGTTAGGGTAAAAACAGAAGACGTTTTCGAAATTTCATGGTTTTTTTTTTTTTTCATTTTAGATCCATTCTCTTTCTAAAGGAAATCATTCAGTCCATGTTTTAGAAAGCAGGGGGAAACCATTTAAAGAACATCCGTTTGCAGTGTGTTGCTGCAGGCCTGCAACTTCATTGCTTATGCATGAGAATACTAGACATCATGGCATGCATGAAAGCATAAATTTGACTCATTATATTTCAGCATTATATTTTCTTGTTAGTATGAATGTTCTTGGTTTAAGATGATGTTATTTGAACAGGATCTGCGTCGTTGAGTTCTAAAGACGCTCCCATGGTAAGAATTTCACTACGATATCTGAATGTCGTTTAGCTAGATTACTGAACCTTTCATAAGCTTTGGATACCTGCTTTTAGGTTCCATATTTAGTCATCCTAAAGATGCTAGGAAGTGATATCAATCAAAAACTAATTCCAGGTGTGGATTAGAACAGGACCTATTCGAATCTGTTCTGTAAGTTGTACAAATCTTCGAGTTCTAAGGAAAAACTTTTAACCCCCGTGAACTCGATCTCCGAAGGAGTCGTCACTCGTCCTGAATATTTTGCTAGATACAATAGTTCAACCTAGATGGCTCGGTTATGCCAATTTTGACAAAGGGTATATTGGATAGTTTTCTCGTTATGTGAATGTGCCCGACCTGTGTTCATCGGTCTTTTTTATAAGAAACAATTTCATTTGGATGGTTGAAATCTCGAAATCTCAATCAATTTCCCTCGTATTCCTTTGGTCAGTTTGTTTGCTAAATCTTGATGCTATAGATCGTAGTGTCCTTTTTGCAGATTGTTCAAACATCAGCAGCATCATCATTTTCCATACATATAACCATTGTTTGACATTGTCTCTGGTTTTGGTGTGAGAACTTTCAGAAATCCTGA

Coding sequence (CDS)

ATGCAATCGCAGGAGAAACCTCCGACAGAGCCTACAGAAATGCAGCCGCAAAATAGTAGAATTTTGCCGCTCTCAGGCAAACCCTACCATGGCGTTATTCTTTCTAAGTCGCATGTCGCTCCCATATGTAATATGTTCATGCCAGCCAAATTTCATTCTGTTTTACCTGCTATTATGATCCCTGCGGTTCTTTACTGTGAGGGAAAGAAATGGAAGATCGATTATTATGGGAATCGACGCGGTAAAGCCCTTGACACGAAACAGTGGAGGAAATTTGTTAATGATAATCATCTCAAGTGTGGAGATGCTTGTGTATTTGAGCTAATAGAATGCAGCAGCAGCGTAATCAAGTTCAGAGTTCAAATTCTCAGAGGCGACATCCCTTTTGAGCTGCACGAAAAGTTCAGCGGGGAATCTAGAAACACTCCTATACTCATTGACTAG

Protein sequence

MQSQEKPPTEPTEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMFMPAKFHSVLPAIMIPAVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKCGDACVFELIECSSSVIKFRVQILRGDIPFELHEKFSGESRNTPILID
Homology
[Close]
BLAST of Cp4.1LG08g02060 vs. Swiss-Prot
Match: Y4869_ORYSJ (B3 domain-containing protein Os04g0386900 OS=Oryza sativa subsp. japonica GN=Os04g0386900 PE=2 SV=3)

HSP 1 Score: 102.1 bits (253), Expect = 5.5e-21
Identity = 57/149 (38.26%), Postives = 80/149 (53.69%), Query Frame = 1 

Query: 5   EKPPTEPTEMQPQNSR---ILPLSGKPYHGVILSKSHVAPICNMFMPAKFHSVLPAIMIP 64
           E  P  P E +P+      +LPL GKPY   I+ KSHV P   + +P  F  +LP+   P
Sbjct: 65  EAAPPRPPEPEPEKVARHGVLPLLGKPYFTCIMCKSHVQPPFQVVVPRSFAPLLPSRTTP 124

Query: 65  AVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKCGDACVFELIECSSSV---IKF 124
           A L   G+ W + + G R  + L+   WR F  DN L+ GD CVFEL+         ++F
Sbjct: 125 ATLSWRGRSWGMRFTGGRLIQRLEA-GWRGFAVDNDLRLGDGCVFELLVGGGGEQERVEF 184

Query: 125 RVQILRGDIPFELHEKFSGESRNTPILID 148
           RVQ+LR +IP  +  +  G +  TPI+ID
Sbjct: 185 RVQVLRAEIPARIRGRAGGYTSATPIVID 212

[Close]
BLAST of Cp4.1LG08g02060 vs. Swiss-Prot
Match: Y6112_ORYSJ (B3 domain-containing protein Os06g0112300 OS=Oryza sativa subsp. japonica GN=Os06g0112300 PE=2 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.2e-15
Identity = 54/145 (37.24%), Postives = 79/145 (54.48%), Query Frame = 1 

Query: 7   PPTEPTEMQPQN-SRILPLS-GKPYHGVILSKSHVAPICNMFMPAKFHSVL--PAIMIPA 66
           PP  P     ++     PL+ G P+   +++KSH+ P   M++P +F   L  P     A
Sbjct: 31  PPPPPASGSGEDWEATTPLAAGNPFFTALIAKSHLHPKFQMWIPPRFQHRLAEPEARTAA 90

Query: 67  VLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKCGDACVFELIEC-SSSVIKFRVQ 126
           VL+  GK W   Y G+ + K LD   W +F  DN L  GDACVFEL+   ++  ++F+VQ
Sbjct: 91  VLHSGGKSWATSYCGHLKMKKLDAG-WSEFAVDNRLLVGDACVFELVAMGAAGGLEFQVQ 150

Query: 127 ILRGDIPFELHEKFSGESRNTPILI 147
           ILRG +P E+     G + + PILI
Sbjct: 151 ILRGGLPAEVVTS-KGLTSDQPILI 173

[Close]
BLAST of Cp4.1LG08g02060 vs. Swiss-Prot
Match: REM16_ARATH (B3 domain-containing protein REM16 OS=Arabidopsis thaliana GN=REM16 PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 5.0e-06
Identity = 32/100 (32.00%), Postives = 51/100 (51.00%), Query Frame = 1 

Query: 32  VILSKSHVAPICNMFMPAKFHSVLPAIMIP---AVLYCEGKKW--KIDYYGNRRGKALDT 91
           V + +SHV   C + +P K+   +  ++I     V+  +  KW  K + +G R    + T
Sbjct: 225 VFMKRSHVVSKCFLTIPYKW--CVKNMLITRQEVVMQVDQTKWEMKFNIFGARGSGGIST 284

Query: 92  KQWRKFVNDNHLKCGDACVFELIECSSSVIKFRVQILRGD 127
             W+KFV DN+L+ GD CVFE     +  +   V I RG+
Sbjct: 285 G-WKKFVQDNNLREGDVCVFEPANSETKPLHLNVYIFRGE 321

[Close]
BLAST of Cp4.1LG08g02060 vs. TrEMBL
Match: A0A0A0L3V3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G126890 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 4.2e-60
Identity = 111/147 (75.51%), Postives = 126/147 (85.71%), Query Frame = 1 

Query: 1   MQSQEKPPTEPTEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMFMPAKFHSVLPAIMI 60
           MQS  KPPTE   M+PQN   +PLSGKPYH  ILSKSHVAPI N+ +PAKFHS+LPAI+I
Sbjct: 1   MQSARKPPTELPTMEPQNGETMPLSGKPYHAFILSKSHVAPIYNLVLPAKFHSILPAIVI 60

Query: 61  PAVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKCGDACVFELIECSSSVIKFRV 120
           PAVL C GKKWKIDY+GNRRGKALD+KQWRKFVNDN LK GDA VFEL+ECSSS++KFRV
Sbjct: 61  PAVLLCRGKKWKIDYHGNRRGKALDSKQWRKFVNDNCLKSGDAIVFELLECSSSILKFRV 120

Query: 121 QILRGDIPFELHEKFSGESRNTPILID 148
           QIL GDIP ELH+KFSGE++ TPI +D
Sbjct: 121 QILSGDIPLELHDKFSGETKETPIHLD 147

[Close]
BLAST of Cp4.1LG08g02060 vs. TrEMBL
Match: M5X861_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa025386mg PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.2e-29
Identity = 61/125 (48.80%), Postives = 87/125 (69.60%), Query Frame = 1 

Query: 23  PLSGKPYHGVILSKSHVAPICNMFMPAKFHSVLPAIMIPAVLYCEGKKWKIDYYGNRRGK 82
           PLSGKP+  V+L+K+ + P+C + +P KF + LP+  IP VL   GK W++ Y+G+   K
Sbjct: 27  PLSGKPFFDVVLTKTSIKPMCQLVVPGKFSATLPSCSIPTVLTFRGKNWEMTYHGSSNYK 86

Query: 83  ALDTKQWRKFVNDNHLKCGDACVFELIECSSSVIKFRVQILRGDIPFELHEKFSGESRNT 142
            LD   W+ F  DN+LK GDACVFE +ECSS+ + FRVQILRGDIP E  +K  G++ + 
Sbjct: 87  RLDN--WKAFAIDNNLKVGDACVFEQLECSSTRLVFRVQILRGDIPSEFLDKLDGDNVDA 146

Query: 143 PILID 148
           PI+++
Sbjct: 147 PIVLE 149

[Close]
BLAST of Cp4.1LG08g02060 vs. TrEMBL
Match: F6I5F3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0024g00930 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 7.2e-28
Identity = 70/146 (47.95%), Postives = 96/146 (65.75%), Query Frame = 1 

Query: 2   QSQEKPPTEPTEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMFMPAKFHSVLPAIMIP 61
           Q+ E+P T+      Q   I PL GKPY  V+L KSH+     M +P K H  +P+ +IP
Sbjct: 54  QTSEEPATKF-----QADEIHPLLGKPYFHVVLVKSHLN---QMVLPTKMHPSVPSAVIP 113

Query: 62  AVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKCGDACVFELIECSSSVIKFRVQ 121
           AVL  + K+W++ + G+ R        WR FVNDN+LK GDACVFEL+EC++S IKFRVQ
Sbjct: 114 AVLVHQDKRWEMTFNGDHRTHKRFDIGWRTFVNDNNLKAGDACVFELMECNTSNIKFRVQ 173

Query: 122 ILRGDIPFELHEKFSGESRNTPILID 148
           ILRGDIP  L ++ +GE+ +T I+I+
Sbjct: 174 ILRGDIPSMLLDRANGETSDTAIVIE 191

[Close]
BLAST of Cp4.1LG08g02060 vs. TrEMBL
Match: A5AIM5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020729 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 7.2e-28
Identity = 70/146 (47.95%), Postives = 96/146 (65.75%), Query Frame = 1 

Query: 2   QSQEKPPTEPTEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMFMPAKFHSVLPAIMIP 61
           Q+ E+P T+      Q   I PL GKPY  V+L KSH+     M +P K H  +P+ +IP
Sbjct: 23  QTSEEPATKF-----QADEIHPLLGKPYFHVVLVKSHLN---QMVLPTKMHPSVPSAVIP 82

Query: 62  AVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKCGDACVFELIECSSSVIKFRVQ 121
           AVL  + K+W++ + G+ R        WR FVNDN+LK GDACVFEL+EC++S IKFRVQ
Sbjct: 83  AVLVHQXKRWEMTFNGDHRTHKRFDIGWRTFVNDNNLKAGDACVFELMECNTSNIKFRVQ 142

Query: 122 ILRGDIPFELHEKFSGESRNTPILID 148
           ILRGDIP  L ++ +GE+ +T I+I+
Sbjct: 143 ILRGDIPSMLLDRANGETSDTAIVIE 160

[Close]
BLAST of Cp4.1LG08g02060 vs. TrEMBL
Match: A0A059C4K6_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_E01753 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.6e-27
Identity = 64/125 (51.20%), Postives = 85/125 (68.00%), Query Frame = 1 

Query: 23  PLSGKPYHGVILSKSHVAPICNMFMPAKFHSVLPAIMIPAVLYCEGKKWKIDYYGNRRGK 82
           PLSGKP+  VIL+KSHV P  N+F+P++ HS+LP+     VL  + K W +  Y   + K
Sbjct: 90  PLSGKPFFDVILTKSHVQPRYNLFIPSRMHSLLPSQDTQTVLAYKDKTWNVMLY--TKTK 149

Query: 83  ALDTKQWRKFVNDNHLKCGDACVFELIECSSSVIKFRVQILRGDIPFELHEKFSGESRNT 142
             D   W++FV+DNHLK GDACVFEL+EC S+ + F+VQILR D P EL  K SGE+   
Sbjct: 150 RFDYS-WKQFVDDNHLKAGDACVFELMECLSTKVTFKVQILRSDFPAELLGKISGETAGA 209

Query: 143 PILID 148
           PI+I+
Sbjct: 210 PIVIE 211

[Close]
BLAST of Cp4.1LG08g02060 vs. TAIR10
Match: AT4G33280.1 (AT4G33280.1 AP2/B3-like transcriptional factor family protein)

HSP 1 Score: 52.4 bits (124), Expect = 2.8e-07
Identity = 32/100 (32.00%), Postives = 51/100 (51.00%), Query Frame = 1 

Query: 32  VILSKSHVAPICNMFMPAKFHSVLPAIMIP---AVLYCEGKKW--KIDYYGNRRGKALDT 91
           V + +SHV   C + +P K+   +  ++I     V+  +  KW  K + +G R    + T
Sbjct: 225 VFMKRSHVVSKCFLTIPYKW--CVKNMLITRQEVVMQVDQTKWEMKFNIFGARGSGGIST 284

Query: 92  KQWRKFVNDNHLKCGDACVFELIECSSSVIKFRVQILRGD 127
             W+KFV DN+L+ GD CVFE     +  +   V I RG+
Sbjct: 285 G-WKKFVQDNNLREGDVCVFEPANSETKPLHLNVYIFRGE 321

[Close]
BLAST of Cp4.1LG08g02060 vs. NCBI nr
Match: gi|778677528|ref|XP_011650806.1| (PREDICTED: B3 domain-containing protein Os04g0386900-like [Cucumis sativus])

HSP 1 Score: 238.8 bits (608), Expect = 6.0e-60
Identity = 111/147 (75.51%), Postives = 126/147 (85.71%), Query Frame = 1 

Query: 1   MQSQEKPPTEPTEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMFMPAKFHSVLPAIMI 60
           MQS  KPPTE   M+PQN   +PLSGKPYH  ILSKSHVAPI N+ +PAKFHS+LPAI+I
Sbjct: 1   MQSARKPPTELPTMEPQNGETMPLSGKPYHAFILSKSHVAPIYNLVLPAKFHSILPAIVI 60

Query: 61  PAVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKCGDACVFELIECSSSVIKFRV 120
           PAVL C GKKWKIDY+GNRRGKALD+KQWRKFVNDN LK GDA VFEL+ECSSS++KFRV
Sbjct: 61  PAVLLCRGKKWKIDYHGNRRGKALDSKQWRKFVNDNCLKSGDAIVFELLECSSSILKFRV 120

Query: 121 QILRGDIPFELHEKFSGESRNTPILID 148
           QIL GDIP ELH+KFSGE++ TPI +D
Sbjct: 121 QILSGDIPLELHDKFSGETKETPIHLD 147

[Close]
BLAST of Cp4.1LG08g02060 vs. NCBI nr
Match: gi|694428103|ref|XP_009341640.1| (PREDICTED: B3 domain-containing protein Os04g0386900-like isoform X2 [Pyrus x bretschneideri])

HSP 1 Score: 140.6 bits (353), Expect = 2.2e-30
Identity = 70/140 (50.00%), Postives = 92/140 (65.71%), Query Frame = 1 

Query: 8   PTEPTEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMFMPAKFHSVLPAIMIPAVLYCE 67
           PT  + ++ Q     PLS KP+  V+++K++V P   M +PAKF   LP+  IP VL   
Sbjct: 5   PTSNSMIELQGDEFWPLSEKPFFEVVITKANVKPSYQMVIPAKFQQTLPSCSIPTVLTFG 64

Query: 68  GKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKCGDACVFELIECSSSVIKFRVQILRGDI 127
           GK W++ Y      +  DT  WR+FVNDN+LK GDACVFEL+ECSS+ + FRVQILRGDI
Sbjct: 65  GKNWEMTYTHGSGQRKFDTN-WREFVNDNNLKVGDACVFELLECSSTKLVFRVQILRGDI 124

Query: 128 PFELHEKFSGESRNTPILID 148
           P EL  K  GE+ + PI+ID
Sbjct: 125 PSELLGKLKGETVDAPIIID 143

[Close]
BLAST of Cp4.1LG08g02060 vs. NCBI nr
Match: gi|470135893|ref|XP_004303740.1| (PREDICTED: B3 domain-containing protein Os04g0386900-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 139.0 bits (349), Expect = 6.4e-30
Identity = 66/135 (48.89%), Postives = 87/135 (64.44%), Query Frame = 1 

Query: 12  TEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMFMPAKFHSVLPAIMIPAVLYCEGKKW 71
           T +Q       PLSGKP+  +IL+KSHV P   + +PAK HS+LP   IP VL   GK W
Sbjct: 11  TIIQLHGEEFWPLSGKPFFDIILAKSHVKPSYMLGIPAKLHSILPPCSIPTVLNFAGKSW 70

Query: 72  KIDYYGNRRGKALDTKQWRKFVNDNHLKCGDACVFELIECSSSVIKFRVQILRGDIPFEL 131
           ++   G  R   LD + W+ FV+DN LK GD CVFE++ECS++ ++ RVQILRGDIP EL
Sbjct: 71  EMTCGGKHRKHKLDKESWKAFVDDNKLKAGDGCVFEVMECSTTKLELRVQILRGDIPAEL 130

Query: 132 HEKFSGESRNTPILI 147
            EK  G+    PI++
Sbjct: 131 LEKERGDEAEKPIVL 145

[Close]
BLAST of Cp4.1LG08g02060 vs. NCBI nr
Match: gi|657949831|ref|XP_008345126.1| (PREDICTED: B3 domain-containing protein Os06g0112300-like [Malus domestica])

HSP 1 Score: 137.1 bits (344), Expect = 2.5e-29
Identity = 69/140 (49.29%), Postives = 90/140 (64.29%), Query Frame = 1 

Query: 8   PTEPTEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMFMPAKFHSVLPAIMIPAVLYCE 67
           PT    ++ Q     PLS KP+  V+++K++V P   M +PAKF   LP+  I  VL   
Sbjct: 5   PTSNPPIELQGDEFWPLSEKPFFEVVIAKANVKPSYQMVIPAKFQQTLPSCSIHTVLMFG 64

Query: 68  GKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKCGDACVFELIECSSSVIKFRVQILRGDI 127
           GK W++ Y      +  DT  WR+FVNDN+LK GDACVFEL+ECSS+ + FRVQILRGDI
Sbjct: 65  GKNWEMTYTCGSGQRKFDTN-WREFVNDNNLKVGDACVFELLECSSTKLIFRVQILRGDI 124

Query: 128 PFELHEKFSGESRNTPILID 148
           P EL  K  GE+ + PI+ID
Sbjct: 125 PSELLRKLKGETVDAPIIID 143

[Close]
BLAST of Cp4.1LG08g02060 vs. NCBI nr
Match: gi|596056091|ref|XP_007220940.1| (hypothetical protein PRUPE_ppa025386mg, partial [Prunus persica])

HSP 1 Score: 136.7 bits (343), Expect = 3.2e-29
Identity = 61/125 (48.80%), Postives = 87/125 (69.60%), Query Frame = 1 

Query: 23  PLSGKPYHGVILSKSHVAPICNMFMPAKFHSVLPAIMIPAVLYCEGKKWKIDYYGNRRGK 82
           PLSGKP+  V+L+K+ + P+C + +P KF + LP+  IP VL   GK W++ Y+G+   K
Sbjct: 27  PLSGKPFFDVVLTKTSIKPMCQLVVPGKFSATLPSCSIPTVLTFRGKNWEMTYHGSSNYK 86

Query: 83  ALDTKQWRKFVNDNHLKCGDACVFELIECSSSVIKFRVQILRGDIPFELHEKFSGESRNT 142
            LD   W+ F  DN+LK GDACVFE +ECSS+ + FRVQILRGDIP E  +K  G++ + 
Sbjct: 87  RLDN--WKAFAIDNNLKVGDACVFEQLECSSTRLVFRVQILRGDIPSEFLDKLDGDNVDA 146

Query: 143 PILID 148
           PI+++
Sbjct: 147 PIVLE 149

The following BLAST results are available for this feature:
BLAST of Cp4.1LG08g02060 vs. Swiss-Prot
Match NameE-valueIdentityDescription
Y4869_ORYSJ5.5e-2138.26B3 domain-containing protein Os04g0386900 OS=Oryza sativa subsp. japonica GN=Os0... [more]
Y6112_ORYSJ1.2e-1537.24B3 domain-containing protein Os06g0112300 OS=Oryza sativa subsp. japonica GN=Os0... [more]
REM16_ARATH5.0e-0632.00B3 domain-containing protein REM16 OS=Arabidopsis thaliana GN=REM16 PE=2 SV=1[more]
BLAST of Cp4.1LG08g02060 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L3V3_CUCSA4.2e-6075.51Uncharacterized protein OS=Cucumis sativus GN=Csa_3G126890 PE=4 SV=1[more]
M5X861_PRUPE2.2e-2948.80Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa025386mg PE=4 S... [more]
F6I5F3_VITVI7.2e-2847.95Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0024g00930 PE=4 SV=... [more]
A5AIM5_VITVI7.2e-2847.95Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020729 PE=4 SV=1[more]
A0A059C4K6_EUCGR1.6e-2751.20Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_E01753 PE=4 ... [more]
BLAST of Cp4.1LG08g02060 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G33280.12.8e-0732.00 AP2/B3-like transcriptional factor family protein[more]
BLAST of Cp4.1LG08g02060 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778677528|ref|XP_011650806.1|6.0e-6075.51PREDICTED: B3 domain-containing protein Os04g0386900-like [Cucumis sativus][more]
gi|694428103|ref|XP_009341640.1|2.2e-3050.00PREDICTED: B3 domain-containing protein Os04g0386900-like isoform X2 [Pyrus x br... [more]
gi|470135893|ref|XP_004303740.1|6.4e-3048.89PREDICTED: B3 domain-containing protein Os04g0386900-like [Fragaria vesca subsp.... [more]
gi|657949831|ref|XP_008345126.1|2.5e-2949.29PREDICTED: B3 domain-containing protein Os06g0112300-like [Malus domestica][more]
gi|596056091|ref|XP_007220940.1|3.2e-2948.80hypothetical protein PRUPE_ppa025386mg, partial [Prunus persica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR015300DNA-bd_pseudobarrel_sf
IPR003340B3_DNA-bd
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0008150 biological_process
cellular_component GO:0005634 nucleus
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG08g02060.1Cp4.1LG08g02060.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003340B3 DNA binding domainPFAMPF02362B3coord: 34..115
score: 6.9
IPR003340B3 DNA binding domainSMARTSM01019B3_2coord: 34..126
score: 0.
IPR003340B3 DNA binding domainPROFILEPS50863B3coord: 67..126
score: 10
IPR015300DNA-binding pseudobarrel domainGENE3DG3DSA:2.40.330.10coord: 27..124
score: 6.7
IPR015300DNA-binding pseudobarrel domainunknownSSF101936DNA-binding pseudobarrel domaincoord: 26..124
score: 5.23
NoneNo IPR availablePANTHERPTHR31391FAMILY NOT NAMEDcoord: 1..146
score: 1.7
NoneNo IPR availablePANTHERPTHR31391:SF15SUBFAMILY NOT NAMEDcoord: 1..146
score: 1.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG08g02060Cucsa.257390Cucumber (Gy14) v1cgycpeB0687
Cp4.1LG08g02060CmaCh06G011520Cucurbita maxima (Rimu)cmacpeB854
Cp4.1LG08g02060CmoCh06G011810Cucurbita moschata (Rifu)cmocpeB796
Cp4.1LG08g02060Cla021334Watermelon (97103) v1cpewmB845
Cp4.1LG08g02060Csa3G126890Cucumber (Chinese Long) v2cpecuB859
Cp4.1LG08g02060MELO3C006216Melon (DHL92) v3.5.1cpemeB813
Cp4.1LG08g02060ClCG05G002510Watermelon (Charleston Gray)cpewcgB787
Cp4.1LG08g02060CSPI03G09800Wild cucumber (PI 183967)cpecpiB861
Cp4.1LG08g02060Lsi05G019330Bottle gourd (USVL1VR-Ls)cpelsiB714
Cp4.1LG08g02060MELO3C006216.2Melon (DHL92) v3.6.1cpemedB951
Cp4.1LG08g02060CsaV3_3G009950Cucumber (Chinese Long) v3cpecucB1056
Cp4.1LG08g02060Bhi01G000055Wax gourdcpewgoB1111
Cp4.1LG08g02060CsGy3G009890Cucumber (Gy14) v2cgybcpeB454
Cp4.1LG08g02060Carg06365Silver-seed gourdcarcpeB1333
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG08g02060Silver-seed gourdcarcpeB0329
Cp4.1LG08g02060Silver-seed gourdcarcpeB0885
Cp4.1LG08g02060Cucumber (Chinese Long) v3cpecucB1077
Cp4.1LG08g02060Wax gourdcpewgoB1097
Cp4.1LG08g02060Cucurbita pepo (Zucchini)cpecpeB194
Cp4.1LG08g02060Cucurbita pepo (Zucchini)cpecpeB344
Cp4.1LG08g02060Cucurbita pepo (Zucchini)cpecpeB482
Cp4.1LG08g02060Cucumber (Gy14) v1cgycpeB0969
Cp4.1LG08g02060Cucurbita maxima (Rimu)cmacpeB021
Cp4.1LG08g02060Cucurbita maxima (Rimu)cmacpeB292
Cp4.1LG08g02060Cucurbita maxima (Rimu)cmacpeB411
Cp4.1LG08g02060Cucurbita moschata (Rifu)cmocpeB254
Cp4.1LG08g02060Cucurbita moschata (Rifu)cmocpeB373
Cp4.1LG08g02060Wild cucumber (PI 183967)cpecpiB879
Cp4.1LG08g02060Cucumber (Chinese Long) v2cpecuB877
Cp4.1LG08g02060Bottle gourd (USVL1VR-Ls)cpelsiB696
Cp4.1LG08g02060Watermelon (Charleston Gray)cpewcgB790
Cp4.1LG08g02060Watermelon (97103) v1cpewmB854
Cp4.1LG08g02060Melon (DHL92) v3.5.1cpemeB791
Cp4.1LG08g02060Cucumber (Gy14) v2cgybcpeB889
Cp4.1LG08g02060Melon (DHL92) v3.6.1cpemedB932