Cp4.1LG08g02060 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG08g02060
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionB3 DNA-binding domain protein
LocationCp4.1LG08 : 3011780 .. 3014178 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CGAACGACCCCTCATTTACGTCCCTATCTCAAGAATTAATGAACTGAAGAACGTACCACTGAGGGTTTCATTCTCCGCTTGCTCCGGTTTCTTACAGGTTACGAAACAATAATCTTCCTCTTAACCTTCTCTTCCACATTTTCGTTTCCGATCAACGAGTACCGACCGGAAGAAAACCAGAAAAAGTGCAGGAAATCGCAAGTAAATGTGAGTGTTGATTGCATTGCGTCTTCTAATCTGTTATTTTTTTTTTCGATCATCTAATCATGGATTTTATCCGATTCTCCCCTTTCCGCAGTCACATTTGGATTTTGCAAGTGATTTGTACTGAAAAGAGGTCTCCAGATGCAATCGCAGGAGAAACCTCCGACAGAGCCTACAGAAATGCAGCCGCAAAATAGTAGAATTTTGCCGCTCTCAGGCAAACCCTACCATGGCGTTATTCTTTCTAAGTCGCATGTCGCTCCCATATGTAATATGGTAAGTTCTCGCTCTCATGGAAATCACTCAGAAATTTTAGTAACAGTTATAGTTATAAACGGAATTGGATTGTGCGTGCTTGCATTGTCAAAACCACTAGATTTTACGGCCAATCCAGGAAGTATGTGGCTGGTTTGATCACCAATAGTTTTGGTATCAAGATTAGCCAGTGTGAAAACTATTAGAAAACCAGTTCATAATAAAAGTTTTGTAAAAATAAGTGTTCGTTTAGTATTTGATTTTCCTTAGAAGAATTAACTGAAAGATTGTCATGAACTTTTAGAATCATTCAATCTCATGATTATTAGGACTTGACATTACCAAATTCTGGGCTACTACCAGAGGCTCAAATTAGCCTATTTTTCAGCATATATATGAATCAGCTTAATTGTAAGGGACTATCATATCTTCATTTGTAGTTCATGCCAGCCAAATTTCATTCTGTTTTACCTGCTATTATGATCCCTGCGGTTCTTTACTGTGAGGGAAAGAAATGGAAGATCGATTATTATGGGAATCGACGCGGTAAAGCCCTTGACACGAAACAGTGGAGGAAATTTGTTAATGATAATCATCTCAAGTGTGGAGATGCTTGTGTATTTGAGCTAATAGAATGCAGCAGCAGCGTAATCAAGTTCAGAGTTCAAATTCTCAGAGGCGACATCCCTTTTGAGCTGCACGAAAAGTTCAGCGGGGAATCTAGAAACACTCCTATACTCATTGACTAGCTAGCCCCTTCTGTGGTCTCTTAGTGTTCAGTAGTTCGAACTTGTCGACAGCATATATGGTTTGGAATCGGACGACCTGTTTGATAACCGTAAGTGGATATGTATGTTTATCACTAATGCCTATGTCTTAGTCAGGTACTTTAGTAGGGAGAAGGAACTGGTTCATTAAGGAGAGGTTAGCACTCTCAAATTCGCTGAAGTTTGAATATTACATTGTCGTTCGTGGTATCTTCGTTCTTTTATTTTGTGTTCATCTTTGTTAGGGTAAAAACAGAAGACGTTTTCGAAATTTCATGGTTTTTTTTTTTTTTCATTTTAGATCCATTCTCTTTCTAAAGGAAATCATTCAGTCCATGTTTTAGAAAGCAGGGGGAAACCATTTAAAGAACATCCGTTTGCAGTGTGTTGCTGCAGGCCTGCAACTTCATTGCTTATGCATGAGAATACTAGACATCATGGCATGCATGAAAGCATAAATTTGACTCATTATATTTCAGCATTATATTTTCTTGTTAGTATGAATGTTCTTGGTTTAAGATGATGTTATTTGAACAGGATCTGCGTCGTTGAGTTCTAAAGACGCTCCCATGGTAAGAATTTCACTACGATATCTGAATGTCGTTTAGCTAGATTACTGAACCTTTCATAAGCTTTGGATACCTGCTTTTAGGTTCCATATTTAGTCATCCTAAAGATGCTAGGAAGTGATATCAATCAAAAACTAATTCCAGGTGTGGATTAGAACAGGACCTATTCGAATCTGTTCTGTAAGTTGTACAAATCTTCGAGTTCTAAGGAAAAACTTTTAACCCCCGTGAACTCGATCTCCGAAGGAGTCGTCACTCGTCCTGAATATTTTGCTAGATACAATAGTTCAACCTAGATGGCTCGGTTATGCCAATTTTGACAAAGGGTATATTGGATAGTTTTCTCGTTATGTGAATGTGCCCGACCTGTGTTCATCGGTCTTTTTTATAAGAAACAATTTCATTTGGATGGTTGAAATCTCGAAATCTCAATCAATTTCCCTCGTATTCCTTTGGTCAGTTTGTTTGCTAAATCTTGATGCTATAGATCGTAGTGTCCTTTTTGCAGATTGTTCAAACATCAGCAGCATCATCATTTTCCATACATATAACCATTGTTTGACATTGTCTCTGGTTTTGGTGTGAGAACTTTCAGAAATCCTGA

mRNA sequence

CGAACGACCCCTCATTTACGTCCCTATCTCAAGAATTAATGAACTGAAGAACGTACCACTGAGGGTTTCATTCTCCGCTTGCTCCGGTTTCTTACAGGTTACGAAACAATAATCTTCCTCTTAACCTTCTCTTCCACATTTTCGTTTCCGATCAACGAGTACCGACCGGAAGAAAACCAGAAAAAGTGCAGGAAATCGCAAGTAAATTCACATTTGGATTTTGCAAGTGATTTGTACTGAAAAGAGGTCTCCAGATGCAATCGCAGGAGAAACCTCCGACAGAGCCTACAGAAATGCAGCCGCAAAATAGTAGAATTTTGCCGCTCTCAGGCAAACCCTACCATGGCGTTATTCTTTCTAAGTCGCATGTCGCTCCCATATGTAATATGTTCATGCCAGCCAAATTTCATTCTGTTTTACCTGCTATTATGATCCCTGCGGTTCTTTACTGTGAGGGAAAGAAATGGAAGATCGATTATTATGGGAATCGACGCGGTAAAGCCCTTGACACGAAACAGTGGAGGAAATTTGTTAATGATAATCATCTCAAGTGTGGAGATGCTTGTGTATTTGAGCTAATAGAATGCAGCAGCAGCGTAATCAAGTTCAGAGTTCAAATTCTCAGAGGCGACATCCCTTTTGAGCTGCACGAAAAGTTCAGCGGGGAATCTAGAAACACTCCTATACTCATTGACTAGCTAGCCCCTTCTGTGGTCTCTTAGTGTTCAGTAGTTCGAACTTGTCGACAGCATATATGGTTTGGAATCGGACGACCTGTTTGATAACCGTAAGTGGATATGTATGTTTATCACTAATGCCTATGTCTTAGTCAGGTACTTTAGTAGGGAGAAGGAACTGGTTCATTAAGGAGAGGTTAGCACTCTCAAATTCGCTGAAGTTTGAATATTACATTGTCGTTCGTGGTATCTTCGTTCTTTTATTTTGTGTTCATCTTTGTTAGGGTAAAAACAGAAGACGTTTTCGAAATTTCATGGTTTTTTTTTTTTTTCATTTTAGATCCATTCTCTTTCTAAAGGAAATCATTCAGTCCATGTTTTAGAAAGCAGGGGGAAACCATTTAAAGAACATCCGTTTGCAGTGTGTTGCTGCAGGCCTGCAACTTCATTGCTTATGCATGAGAATACTAGACATCATGGCATGCATGAAAGCATAAATTTGACTCATTATATTTCAGCATTATATTTTCTTGTTAGTATGAATGTTCTTGGTTTAAGATGATGTTATTTGAACAGGATCTGCGTCGTTGAGTTCTAAAGACGCTCCCATGGTAAGAATTTCACTACGATATCTGAATGTCGTTTAGCTAGATTACTGAACCTTTCATAAGCTTTGGATACCTGCTTTTAGGTTCCATATTTAGTCATCCTAAAGATGCTAGGAAGTGATATCAATCAAAAACTAATTCCAGGTGTGGATTAGAACAGGACCTATTCGAATCTGTTCTGTAAGTTGTACAAATCTTCGAGTTCTAAGGAAAAACTTTTAACCCCCGTGAACTCGATCTCCGAAGGAGTCGTCACTCGTCCTGAATATTTTGCTAGATACAATAGTTCAACCTAGATGGCTCGGTTATGCCAATTTTGACAAAGGGTATATTGGATAGTTTTCTCGTTATGTGAATGTGCCCGACCTGTGTTCATCGGTCTTTTTTATAAGAAACAATTTCATTTGGATGGTTGAAATCTCGAAATCTCAATCAATTTCCCTCGTATTCCTTTGGTCAGTTTGTTTGCTAAATCTTGATGCTATAGATCGTAGTGTCCTTTTTGCAGATTGTTCAAACATCAGCAGCATCATCATTTTCCATACATATAACCATTGTTTGACATTGTCTCTGGTTTTGGTGTGAGAACTTTCAGAAATCCTGA

Coding sequence (CDS)

ATGCAATCGCAGGAGAAACCTCCGACAGAGCCTACAGAAATGCAGCCGCAAAATAGTAGAATTTTGCCGCTCTCAGGCAAACCCTACCATGGCGTTATTCTTTCTAAGTCGCATGTCGCTCCCATATGTAATATGTTCATGCCAGCCAAATTTCATTCTGTTTTACCTGCTATTATGATCCCTGCGGTTCTTTACTGTGAGGGAAAGAAATGGAAGATCGATTATTATGGGAATCGACGCGGTAAAGCCCTTGACACGAAACAGTGGAGGAAATTTGTTAATGATAATCATCTCAAGTGTGGAGATGCTTGTGTATTTGAGCTAATAGAATGCAGCAGCAGCGTAATCAAGTTCAGAGTTCAAATTCTCAGAGGCGACATCCCTTTTGAGCTGCACGAAAAGTTCAGCGGGGAATCTAGAAACACTCCTATACTCATTGACTAG

Protein sequence

MQSQEKPPTEPTEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMFMPAKFHSVLPAIMIPAVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKCGDACVFELIECSSSVIKFRVQILRGDIPFELHEKFSGESRNTPILID
BLAST of Cp4.1LG08g02060 vs. Swiss-Prot
Match: Y4869_ORYSJ (B3 domain-containing protein Os04g0386900 OS=Oryza sativa subsp. japonica GN=Os04g0386900 PE=2 SV=3)

HSP 1 Score: 102.1 bits (253), Expect = 5.5e-21
Identity = 57/149 (38.26%), Postives = 80/149 (53.69%), Query Frame = 1

Query: 5   EKPPTEPTEMQPQNSR---ILPLSGKPYHGVILSKSHVAPICNMFMPAKFHSVLPAIMIP 64
           E  P  P E +P+      +LPL GKPY   I+ KSHV P   + +P  F  +LP+   P
Sbjct: 65  EAAPPRPPEPEPEKVARHGVLPLLGKPYFTCIMCKSHVQPPFQVVVPRSFAPLLPSRTTP 124

Query: 65  AVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKCGDACVFELIECSSSV---IKF 124
           A L   G+ W + + G R  + L+   WR F  DN L+ GD CVFEL+         ++F
Sbjct: 125 ATLSWRGRSWGMRFTGGRLIQRLEA-GWRGFAVDNDLRLGDGCVFELLVGGGGEQERVEF 184

Query: 125 RVQILRGDIPFELHEKFSGESRNTPILID 148
           RVQ+LR +IP  +  +  G +  TPI+ID
Sbjct: 185 RVQVLRAEIPARIRGRAGGYTSATPIVID 212

BLAST of Cp4.1LG08g02060 vs. Swiss-Prot
Match: Y6112_ORYSJ (B3 domain-containing protein Os06g0112300 OS=Oryza sativa subsp. japonica GN=Os06g0112300 PE=2 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.2e-15
Identity = 54/145 (37.24%), Postives = 79/145 (54.48%), Query Frame = 1

Query: 7   PPTEPTEMQPQN-SRILPLS-GKPYHGVILSKSHVAPICNMFMPAKFHSVL--PAIMIPA 66
           PP  P     ++     PL+ G P+   +++KSH+ P   M++P +F   L  P     A
Sbjct: 31  PPPPPASGSGEDWEATTPLAAGNPFFTALIAKSHLHPKFQMWIPPRFQHRLAEPEARTAA 90

Query: 67  VLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKCGDACVFELIEC-SSSVIKFRVQ 126
           VL+  GK W   Y G+ + K LD   W +F  DN L  GDACVFEL+   ++  ++F+VQ
Sbjct: 91  VLHSGGKSWATSYCGHLKMKKLDAG-WSEFAVDNRLLVGDACVFELVAMGAAGGLEFQVQ 150

Query: 127 ILRGDIPFELHEKFSGESRNTPILI 147
           ILRG +P E+     G + + PILI
Sbjct: 151 ILRGGLPAEVVTS-KGLTSDQPILI 173

BLAST of Cp4.1LG08g02060 vs. Swiss-Prot
Match: REM16_ARATH (B3 domain-containing protein REM16 OS=Arabidopsis thaliana GN=REM16 PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 5.0e-06
Identity = 32/100 (32.00%), Postives = 51/100 (51.00%), Query Frame = 1

Query: 32  VILSKSHVAPICNMFMPAKFHSVLPAIMIP---AVLYCEGKKW--KIDYYGNRRGKALDT 91
           V + +SHV   C + +P K+   +  ++I     V+  +  KW  K + +G R    + T
Sbjct: 225 VFMKRSHVVSKCFLTIPYKW--CVKNMLITRQEVVMQVDQTKWEMKFNIFGARGSGGIST 284

Query: 92  KQWRKFVNDNHLKCGDACVFELIECSSSVIKFRVQILRGD 127
             W+KFV DN+L+ GD CVFE     +  +   V I RG+
Sbjct: 285 G-WKKFVQDNNLREGDVCVFEPANSETKPLHLNVYIFRGE 321

BLAST of Cp4.1LG08g02060 vs. TrEMBL
Match: A0A0A0L3V3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G126890 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 4.2e-60
Identity = 111/147 (75.51%), Postives = 126/147 (85.71%), Query Frame = 1

Query: 1   MQSQEKPPTEPTEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMFMPAKFHSVLPAIMI 60
           MQS  KPPTE   M+PQN   +PLSGKPYH  ILSKSHVAPI N+ +PAKFHS+LPAI+I
Sbjct: 1   MQSARKPPTELPTMEPQNGETMPLSGKPYHAFILSKSHVAPIYNLVLPAKFHSILPAIVI 60

Query: 61  PAVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKCGDACVFELIECSSSVIKFRV 120
           PAVL C GKKWKIDY+GNRRGKALD+KQWRKFVNDN LK GDA VFEL+ECSSS++KFRV
Sbjct: 61  PAVLLCRGKKWKIDYHGNRRGKALDSKQWRKFVNDNCLKSGDAIVFELLECSSSILKFRV 120

Query: 121 QILRGDIPFELHEKFSGESRNTPILID 148
           QIL GDIP ELH+KFSGE++ TPI +D
Sbjct: 121 QILSGDIPLELHDKFSGETKETPIHLD 147

BLAST of Cp4.1LG08g02060 vs. TrEMBL
Match: M5X861_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa025386mg PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.2e-29
Identity = 61/125 (48.80%), Postives = 87/125 (69.60%), Query Frame = 1

Query: 23  PLSGKPYHGVILSKSHVAPICNMFMPAKFHSVLPAIMIPAVLYCEGKKWKIDYYGNRRGK 82
           PLSGKP+  V+L+K+ + P+C + +P KF + LP+  IP VL   GK W++ Y+G+   K
Sbjct: 27  PLSGKPFFDVVLTKTSIKPMCQLVVPGKFSATLPSCSIPTVLTFRGKNWEMTYHGSSNYK 86

Query: 83  ALDTKQWRKFVNDNHLKCGDACVFELIECSSSVIKFRVQILRGDIPFELHEKFSGESRNT 142
            LD   W+ F  DN+LK GDACVFE +ECSS+ + FRVQILRGDIP E  +K  G++ + 
Sbjct: 87  RLDN--WKAFAIDNNLKVGDACVFEQLECSSTRLVFRVQILRGDIPSEFLDKLDGDNVDA 146

Query: 143 PILID 148
           PI+++
Sbjct: 147 PIVLE 149

BLAST of Cp4.1LG08g02060 vs. TrEMBL
Match: F6I5F3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0024g00930 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 7.2e-28
Identity = 70/146 (47.95%), Postives = 96/146 (65.75%), Query Frame = 1

Query: 2   QSQEKPPTEPTEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMFMPAKFHSVLPAIMIP 61
           Q+ E+P T+      Q   I PL GKPY  V+L KSH+     M +P K H  +P+ +IP
Sbjct: 54  QTSEEPATKF-----QADEIHPLLGKPYFHVVLVKSHLN---QMVLPTKMHPSVPSAVIP 113

Query: 62  AVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKCGDACVFELIECSSSVIKFRVQ 121
           AVL  + K+W++ + G+ R        WR FVNDN+LK GDACVFEL+EC++S IKFRVQ
Sbjct: 114 AVLVHQDKRWEMTFNGDHRTHKRFDIGWRTFVNDNNLKAGDACVFELMECNTSNIKFRVQ 173

Query: 122 ILRGDIPFELHEKFSGESRNTPILID 148
           ILRGDIP  L ++ +GE+ +T I+I+
Sbjct: 174 ILRGDIPSMLLDRANGETSDTAIVIE 191

BLAST of Cp4.1LG08g02060 vs. TrEMBL
Match: A5AIM5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020729 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 7.2e-28
Identity = 70/146 (47.95%), Postives = 96/146 (65.75%), Query Frame = 1

Query: 2   QSQEKPPTEPTEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMFMPAKFHSVLPAIMIP 61
           Q+ E+P T+      Q   I PL GKPY  V+L KSH+     M +P K H  +P+ +IP
Sbjct: 23  QTSEEPATKF-----QADEIHPLLGKPYFHVVLVKSHLN---QMVLPTKMHPSVPSAVIP 82

Query: 62  AVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKCGDACVFELIECSSSVIKFRVQ 121
           AVL  + K+W++ + G+ R        WR FVNDN+LK GDACVFEL+EC++S IKFRVQ
Sbjct: 83  AVLVHQXKRWEMTFNGDHRTHKRFDIGWRTFVNDNNLKAGDACVFELMECNTSNIKFRVQ 142

Query: 122 ILRGDIPFELHEKFSGESRNTPILID 148
           ILRGDIP  L ++ +GE+ +T I+I+
Sbjct: 143 ILRGDIPSMLLDRANGETSDTAIVIE 160

BLAST of Cp4.1LG08g02060 vs. TrEMBL
Match: A0A059C4K6_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_E01753 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.6e-27
Identity = 64/125 (51.20%), Postives = 85/125 (68.00%), Query Frame = 1

Query: 23  PLSGKPYHGVILSKSHVAPICNMFMPAKFHSVLPAIMIPAVLYCEGKKWKIDYYGNRRGK 82
           PLSGKP+  VIL+KSHV P  N+F+P++ HS+LP+     VL  + K W +  Y   + K
Sbjct: 90  PLSGKPFFDVILTKSHVQPRYNLFIPSRMHSLLPSQDTQTVLAYKDKTWNVMLY--TKTK 149

Query: 83  ALDTKQWRKFVNDNHLKCGDACVFELIECSSSVIKFRVQILRGDIPFELHEKFSGESRNT 142
             D   W++FV+DNHLK GDACVFEL+EC S+ + F+VQILR D P EL  K SGE+   
Sbjct: 150 RFDYS-WKQFVDDNHLKAGDACVFELMECLSTKVTFKVQILRSDFPAELLGKISGETAGA 209

Query: 143 PILID 148
           PI+I+
Sbjct: 210 PIVIE 211

BLAST of Cp4.1LG08g02060 vs. TAIR10
Match: AT4G33280.1 (AT4G33280.1 AP2/B3-like transcriptional factor family protein)

HSP 1 Score: 52.4 bits (124), Expect = 2.8e-07
Identity = 32/100 (32.00%), Postives = 51/100 (51.00%), Query Frame = 1

Query: 32  VILSKSHVAPICNMFMPAKFHSVLPAIMIP---AVLYCEGKKW--KIDYYGNRRGKALDT 91
           V + +SHV   C + +P K+   +  ++I     V+  +  KW  K + +G R    + T
Sbjct: 225 VFMKRSHVVSKCFLTIPYKW--CVKNMLITRQEVVMQVDQTKWEMKFNIFGARGSGGIST 284

Query: 92  KQWRKFVNDNHLKCGDACVFELIECSSSVIKFRVQILRGD 127
             W+KFV DN+L+ GD CVFE     +  +   V I RG+
Sbjct: 285 G-WKKFVQDNNLREGDVCVFEPANSETKPLHLNVYIFRGE 321

BLAST of Cp4.1LG08g02060 vs. NCBI nr
Match: gi|778677528|ref|XP_011650806.1| (PREDICTED: B3 domain-containing protein Os04g0386900-like [Cucumis sativus])

HSP 1 Score: 238.8 bits (608), Expect = 6.0e-60
Identity = 111/147 (75.51%), Postives = 126/147 (85.71%), Query Frame = 1

Query: 1   MQSQEKPPTEPTEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMFMPAKFHSVLPAIMI 60
           MQS  KPPTE   M+PQN   +PLSGKPYH  ILSKSHVAPI N+ +PAKFHS+LPAI+I
Sbjct: 1   MQSARKPPTELPTMEPQNGETMPLSGKPYHAFILSKSHVAPIYNLVLPAKFHSILPAIVI 60

Query: 61  PAVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKCGDACVFELIECSSSVIKFRV 120
           PAVL C GKKWKIDY+GNRRGKALD+KQWRKFVNDN LK GDA VFEL+ECSSS++KFRV
Sbjct: 61  PAVLLCRGKKWKIDYHGNRRGKALDSKQWRKFVNDNCLKSGDAIVFELLECSSSILKFRV 120

Query: 121 QILRGDIPFELHEKFSGESRNTPILID 148
           QIL GDIP ELH+KFSGE++ TPI +D
Sbjct: 121 QILSGDIPLELHDKFSGETKETPIHLD 147

BLAST of Cp4.1LG08g02060 vs. NCBI nr
Match: gi|694428103|ref|XP_009341640.1| (PREDICTED: B3 domain-containing protein Os04g0386900-like isoform X2 [Pyrus x bretschneideri])

HSP 1 Score: 140.6 bits (353), Expect = 2.2e-30
Identity = 70/140 (50.00%), Postives = 92/140 (65.71%), Query Frame = 1

Query: 8   PTEPTEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMFMPAKFHSVLPAIMIPAVLYCE 67
           PT  + ++ Q     PLS KP+  V+++K++V P   M +PAKF   LP+  IP VL   
Sbjct: 5   PTSNSMIELQGDEFWPLSEKPFFEVVITKANVKPSYQMVIPAKFQQTLPSCSIPTVLTFG 64

Query: 68  GKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKCGDACVFELIECSSSVIKFRVQILRGDI 127
           GK W++ Y      +  DT  WR+FVNDN+LK GDACVFEL+ECSS+ + FRVQILRGDI
Sbjct: 65  GKNWEMTYTHGSGQRKFDTN-WREFVNDNNLKVGDACVFELLECSSTKLVFRVQILRGDI 124

Query: 128 PFELHEKFSGESRNTPILID 148
           P EL  K  GE+ + PI+ID
Sbjct: 125 PSELLGKLKGETVDAPIIID 143

BLAST of Cp4.1LG08g02060 vs. NCBI nr
Match: gi|470135893|ref|XP_004303740.1| (PREDICTED: B3 domain-containing protein Os04g0386900-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 139.0 bits (349), Expect = 6.4e-30
Identity = 66/135 (48.89%), Postives = 87/135 (64.44%), Query Frame = 1

Query: 12  TEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMFMPAKFHSVLPAIMIPAVLYCEGKKW 71
           T +Q       PLSGKP+  +IL+KSHV P   + +PAK HS+LP   IP VL   GK W
Sbjct: 11  TIIQLHGEEFWPLSGKPFFDIILAKSHVKPSYMLGIPAKLHSILPPCSIPTVLNFAGKSW 70

Query: 72  KIDYYGNRRGKALDTKQWRKFVNDNHLKCGDACVFELIECSSSVIKFRVQILRGDIPFEL 131
           ++   G  R   LD + W+ FV+DN LK GD CVFE++ECS++ ++ RVQILRGDIP EL
Sbjct: 71  EMTCGGKHRKHKLDKESWKAFVDDNKLKAGDGCVFEVMECSTTKLELRVQILRGDIPAEL 130

Query: 132 HEKFSGESRNTPILI 147
            EK  G+    PI++
Sbjct: 131 LEKERGDEAEKPIVL 145

BLAST of Cp4.1LG08g02060 vs. NCBI nr
Match: gi|657949831|ref|XP_008345126.1| (PREDICTED: B3 domain-containing protein Os06g0112300-like [Malus domestica])

HSP 1 Score: 137.1 bits (344), Expect = 2.5e-29
Identity = 69/140 (49.29%), Postives = 90/140 (64.29%), Query Frame = 1

Query: 8   PTEPTEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMFMPAKFHSVLPAIMIPAVLYCE 67
           PT    ++ Q     PLS KP+  V+++K++V P   M +PAKF   LP+  I  VL   
Sbjct: 5   PTSNPPIELQGDEFWPLSEKPFFEVVIAKANVKPSYQMVIPAKFQQTLPSCSIHTVLMFG 64

Query: 68  GKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKCGDACVFELIECSSSVIKFRVQILRGDI 127
           GK W++ Y      +  DT  WR+FVNDN+LK GDACVFEL+ECSS+ + FRVQILRGDI
Sbjct: 65  GKNWEMTYTCGSGQRKFDTN-WREFVNDNNLKVGDACVFELLECSSTKLIFRVQILRGDI 124

Query: 128 PFELHEKFSGESRNTPILID 148
           P EL  K  GE+ + PI+ID
Sbjct: 125 PSELLRKLKGETVDAPIIID 143

BLAST of Cp4.1LG08g02060 vs. NCBI nr
Match: gi|596056091|ref|XP_007220940.1| (hypothetical protein PRUPE_ppa025386mg, partial [Prunus persica])

HSP 1 Score: 136.7 bits (343), Expect = 3.2e-29
Identity = 61/125 (48.80%), Postives = 87/125 (69.60%), Query Frame = 1

Query: 23  PLSGKPYHGVILSKSHVAPICNMFMPAKFHSVLPAIMIPAVLYCEGKKWKIDYYGNRRGK 82
           PLSGKP+  V+L+K+ + P+C + +P KF + LP+  IP VL   GK W++ Y+G+   K
Sbjct: 27  PLSGKPFFDVVLTKTSIKPMCQLVVPGKFSATLPSCSIPTVLTFRGKNWEMTYHGSSNYK 86

Query: 83  ALDTKQWRKFVNDNHLKCGDACVFELIECSSSVIKFRVQILRGDIPFELHEKFSGESRNT 142
            LD   W+ F  DN+LK GDACVFE +ECSS+ + FRVQILRGDIP E  +K  G++ + 
Sbjct: 87  RLDN--WKAFAIDNNLKVGDACVFEQLECSSTRLVFRVQILRGDIPSEFLDKLDGDNVDA 146

Query: 143 PILID 148
           PI+++
Sbjct: 147 PIVLE 149

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Y4869_ORYSJ5.5e-2138.26B3 domain-containing protein Os04g0386900 OS=Oryza sativa subsp. japonica GN=Os0... [more]
Y6112_ORYSJ1.2e-1537.24B3 domain-containing protein Os06g0112300 OS=Oryza sativa subsp. japonica GN=Os0... [more]
REM16_ARATH5.0e-0632.00B3 domain-containing protein REM16 OS=Arabidopsis thaliana GN=REM16 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0L3V3_CUCSA4.2e-6075.51Uncharacterized protein OS=Cucumis sativus GN=Csa_3G126890 PE=4 SV=1[more]
M5X861_PRUPE2.2e-2948.80Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa025386mg PE=4 S... [more]
F6I5F3_VITVI7.2e-2847.95Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0024g00930 PE=4 SV=... [more]
A5AIM5_VITVI7.2e-2847.95Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020729 PE=4 SV=1[more]
A0A059C4K6_EUCGR1.6e-2751.20Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_E01753 PE=4 ... [more]
Match NameE-valueIdentityDescription
AT4G33280.12.8e-0732.00 AP2/B3-like transcriptional factor family protein[more]
Match NameE-valueIdentityDescription
gi|778677528|ref|XP_011650806.1|6.0e-6075.51PREDICTED: B3 domain-containing protein Os04g0386900-like [Cucumis sativus][more]
gi|694428103|ref|XP_009341640.1|2.2e-3050.00PREDICTED: B3 domain-containing protein Os04g0386900-like isoform X2 [Pyrus x br... [more]
gi|470135893|ref|XP_004303740.1|6.4e-3048.89PREDICTED: B3 domain-containing protein Os04g0386900-like [Fragaria vesca subsp.... [more]
gi|657949831|ref|XP_008345126.1|2.5e-2949.29PREDICTED: B3 domain-containing protein Os06g0112300-like [Malus domestica][more]
gi|596056091|ref|XP_007220940.1|3.2e-2948.80hypothetical protein PRUPE_ppa025386mg, partial [Prunus persica][more]
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR015300DNA-bd_pseudobarrel_sf
IPR003340B3_DNA-bd
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0008150 biological_process
cellular_component GO:0005634 nucleus
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG08g02060.1Cp4.1LG08g02060.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003340B3 DNA binding domainPFAMPF02362B3coord: 34..115
score: 6.9
IPR003340B3 DNA binding domainSMARTSM01019B3_2coord: 34..126
score: 0.
IPR003340B3 DNA binding domainPROFILEPS50863B3coord: 67..126
score: 10
IPR015300DNA-binding pseudobarrel domainGENE3DG3DSA:2.40.330.10coord: 27..124
score: 6.7
IPR015300DNA-binding pseudobarrel domainunknownSSF101936DNA-binding pseudobarrel domaincoord: 26..124
score: 5.23
NoneNo IPR availablePANTHERPTHR31391FAMILY NOT NAMEDcoord: 1..146
score: 1.7
NoneNo IPR availablePANTHERPTHR31391:SF15SUBFAMILY NOT NAMEDcoord: 1..146
score: 1.7

The following gene(s) are paralogous to this gene:

None