Cucsa.220200 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.220200
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionCytochrome b6-f complex subunit 7
Locationscaffold01658 : 1708545 .. 1711363 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACCCCcACTCCCCCCATCCATTTCTCATCTCATCACTTTCAATTTTCTCTTCCACTCAGGTTCAATCCCTTCCCTTTTtCTCCCTCAAAaTCCCCTTTtCCCATCTCAGTTTTCACTCAATATTGACTCTTCCTTCTCTCTTCCTCTTCTTtCAGGCACCATTCCAATGGCTACAGCCTCCGCTACCCTCTCGACGGCCATGTCCTCCGCCGCCCCCATCTCCGCCGGCTCAAGGCGGCAGAGGCAAACCAATGCCCATTTTATTTCTGGGCTTAACTCCTTTAGTGGCTTGAAAGCTCACAACAATGTCGTCTCCTTAGGCCTTCCCGTTTGTGCTGATCAATCATTTGCAAAAATTGTGAGCTCTTTGAAATACCCATCAAAGGGAAAGGGGAAAAACGGCGGTGGAGCTCTTTCTTCCACTTGTAATGCCGCCGGTGAGATTTTCAGGATTGCTGCCATTATCAATGGCCTGGTTCTTATTGGTGTGGCTGTGGGGTTTGTTCTTCTTCGGATCGAAGCATCTGTGGAGGAGGCAGAGTGAAAAGCTACCAAAAATGGTTGATGATGATGAGGATATTGGTCGGTTATCTGAAATTTGTAAGTTAATCTACTTTTACCAGTTATTGTAGAACTCAATTGTTTCCATCAGTCAAAACAATTGACAAAATTCATTTTCCCTATTTCTTTGCCCTGCTTTCTCATTAAAAAATAATGGCATTGTAGTATATCGTTCATCTGCTTGAAAAAAGATGCATATTCTTGTAAATTCTTTTTGTGCTGCTTGGATCATGAGAAGAATAAGAAATGAACTTTCCAGGCAATTATTGTAAGATCAACTAGTTCTTTGCGGAGACTGCCAAAAaGAAAAAAAAaCAATAGAAATATGGTTATCAAACGGAGGTTAAGTTATTGTGTTTTTGAATTCACTGTTAATATGTTTTGAAACAACAACTTTGTCTTAAGTAAACTGAAAGAAAAAGGGAACAAATTGTAAGAAAATGTATCCACATACAATCCATTTCACGCAGTTACTGTTTTGGCAGTAGAAAGTTGGATCGTAAACAATCTCATAAACCAAGCAACCAGCATCTCAAATTGGTGTAAAGAACTTGAATGTTAGTTAGTAGGTTTTTGAACGAAGATTGGTATGAAACTTAGACAGGAGACTGAAATCAAGAATTGTACTTTTGTGTATAGAGTTCAATTTCACTGGAGTAAGCTTTCATGTTTACTCTCAAATAAAGGTTGTCTTGTTGATTATACAAAGCCTAGCGTACATGAAATAGATTCCTGCAATATATGGCTTGAAATTGAACCTTGCTTGATGAACTTATTACTAAGAAGTAAGAGTTGAGGAACATTTTGAATCAACTTAGCTTGACTCAGAGGGAAAGAGATCAGGGGATTAGATTAAAAAAaGCTTCATTCAACAAAAAGAGAGTTCCTTGATCGTACTGTACAATGCTAGAATGTCAATTGTCAAACAGTACAGGGGATGGAAAAGAAGGATCTTCTCTCCAGTCTCCATAAGCGATTCTAATTAAATTGGATGATCTCGATACCACACGCATTTCCAGGGTTGGATGCTGAATGTTTGTAAAAATGTTGCTGAATGTTTTAATGATTTGTGTATCACATTTAAAGGAAACTAAAACTTTGTTTTGGTCTCAATATTGATTCGAGATGTACTGAGATGAACCATAAAAAAaTTAACAAAAAGAGTGCAATTTGCGATACGTGGAAAGAGAGTGCAATGTTAGTTACTAGTCTGGATGATATGTACCTAAGTTCTTTATGTATTTATTATGATTGATGGTTTTAATAACACAATCACAGCCTTTTCTCTTCATATGACATTGTCTTGACCCTTTTGGCCAATTGATTCAACTCATTCACAACCTTGTTGCTGATAGCTATATCAATGCATATTGGTATCTTTTGGTCAACTCAAAGCTGCTCATAGTCCGTTAACTGGATCTTCGAGCTGCAATTTTCAGATTTAGTACATTTGATGCTTATAATTCCAGTAAATATAAGAATTCCTGCTAGTATCCAGCTGAATTGGAGGTTGGCGAGTGCCCGTGCCCTCATATCAGCTTCTTCAGAGGCACAAATGACTGCTCCAAGCATTTCATCTTTGCCGTTGTCCATCACCCTCATACTGCAGCCCTTGGGAACTAAGTTTGGAACCCATAGCATGAACCCCATGTTCATAAACCAACACCCTTGCAAAACAACCAATAATGAAAGAATAAGAGCTGCAGGGAAGTTGCTAGGACAACAAGCAGCTACGATTACTGACACAAGAGACGCGAACACTATCACTTGCAAGAGCCAATGGTAATGACCTTCGATGCCATTATGGTCAGCTGAGTGGAAATGGAGCAAGAATAACTCCTGACTGAAAACACAGGCTGCAAAGACGCCATCAATACCAGATAATACATTTGATGAGCGATTCAACTCGTTATAGAGGGTAAAACCTGAAAATATGGCAAGGTGTAGGAACATGCTAGCGTGCTCCAAGTTGATGACTTTGAAAGACAAATGAACAAAAGGGAAGTCCCAAAATTGTCTGAAAATTGCAATGATCGAAAAAGAGAACACGAAAATGAGCTCCAAGTACTTGAATTTGGAAAAAGGTTGGTCGAGAGGATACCAAAATCGTACTTTGAAATTTGAAGAGCCTTTGAGATTGTAGGTTTTGATCGTATTCACAGTATGCCAAAGGCCAAGAAGAGTGAATGCAAAACCGGATGCTACATGAGGTACTAATTGCCCCATTGAACCTCTACTTTCAAACTCTAGCTTACCAA

mRNA sequence

ACCCCCACTCCCCCCATCCATTTCTCATCTCATCACTTTCAATTTTCTCTTCCACTCAGGCACCATTCCAATGGCTACAGCCTCCGCTACCCTCTCGACGGCCATGTCCTCCGCCGCCCCCATCTCCGCCGGCTCAAGGCGGCAGAGGCAAACCAATGCCCATTTTATTTCTGGGCTTAACTCCTTTAGTGGCTTGAAAGCTCACAACAATGTCGTCTCCTTAGGCCTTCCCGTTTGTGCTGATCAATCATTTGCAAAAATTGTGAGCTCTTTGAAATACCCATCAAAGGGAAAGGGGAAAAACGGCGGTGGAGCTCTTTCTTCCACTTGTAATGCCGCCGGTGAGATTTTCAGGATTGCTGCCATTATCAATGGCCTGGTTCTTATTGGTGTGGCTGTGGGGTTTGTTCTTCTTCGGATCGAAGCATCTGTGGAGGAGGCAGAGTGAAAAGCTACCAAAAATGGTTGATGATGATGAGGATATTGGTCGGTTATCTGAAATTTCTATATCAATGCATATTGGTATCTTTTGGTCAACTCAAAGCTGCTCATAGTCCGTTAACTGGATCTTCGAGCTGCAATTTTCAGATTTAGTACATTTGATGCTTATAATTCCAGTAAATATAAGAATTCCTGCTAGTATCCAGCTGAATTGGAGGTTGGCGAGTGCCCGTGCCCTCATATCAGCTTCTTCAGAGGCACAAATGACTGCTCCAAGCATTTCATCTTTGCCGTTGTCCATCACCCTCATACTGCAGCCCTTGGGAACTAAGTTTGGAACCCATAGCATGAACCCCATGTTCATAAACCAACACCCTTGCAAAACAACCAATAATGAAAGAATAAGAGCTGCAGGGAAGTTGCTAGGACAACAAGCAGCTACGATTACTGACACAAGAGACGCGAACACTATCACTTGCAAGAGCCAATGGTAATGACCTTCGATGCCATTATGGTCAGCTGAGTGGAAATGGAGCAAGAATAACTCCTGACTGAAAACACAGGCTGCAAAGACGCCATCAATACCAGATAATACATTTGATGAGCGATTCAACTCGTTATAGAGGGTAAAACCTGAAAATATGGCAAGGTGTAGGAACATGCTAGCGTGCTCCAAGTTGATGACTTTGAAAGACAAATGAACAAAAGGGAAGTCCCAAAATTGTCTGAAAATTGCAATGATCGAAAAAGAGAACACGAAAATGAGCTCCAAGTACTTGAATTTGGAAAAAGGTTGGTCGAGAGGATACCAAAATCGTACTTTGAAATTTGAAGAGCCTTTGAGATTGTAGGTTTTGATCGTATTCACAGTATGCCAAAGGCCAAGAAGAGTGAATGCAAAACCGGATGCTACATGAGGTACTAATTGCCCCATTGAACCTCTACTTTCAAACTCTAGCTTACCAA

Coding sequence (CDS)

ATGGCTACAGCCTCCGCTACCCTCTCGACGGCCATGTCCTCCGCCGCCCCCATCTCCGCCGGCTCAAGGCGGCAGAGGCAAACCAATGCCCATTTTATTTCTGGGCTTAACTCCTTTAGTGGCTTGAAAGCTCACAACAATGTCGTCTCCTTAGGCCTTCCCGTTTGTGCTGATCAATCATTTGCAAAAATTGTGAGCTCTTTGAAATACCCATCAAAGGGAAAGGGGAAAAACGGCGGTGGAGCTCTTTCTTCCACTTGTAATGCCGCCGGTGAGATTTTCAGGATTGCTGCCATTATCAATGGCCTGGTTCTTATTGGTGTGGCTGTGGGGTTTGTTCTTCTTCGGATCGAAGCATCTGTGGAGGAGGCAGAGTGA

Protein sequence

MATASATLSTAMSSAAPISAGSRRQRQTNAHFISGLNSFSGLKAHNNVVSLGLPVCADQSFAKIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLIGVAVGFVLLRIEASVEEAE*
Homology
[Close]
BLAST of Cucsa.220200 vs. Swiss-Prot
Match: PETM_SPIOL (Cytochrome b6-f complex subunit 7 (Fragment) OS=Spinacia oleracea GN=petM PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 9.2e-09
Identity = 29/36 (80.56%), Postives = 34/36 (94.44%), Query Frame = 1 

Query: 88  NAAGEIFRIAAIINGLVLIGVAVGFVLLRIEASVEE 124
           NAA EIFRIAA++NGL L+GVA+GFVLLRIEA+VEE
Sbjct: 1   NAAAEIFRIAAVMNGLTLVGVAIGFVLLRIEATVEE 36

[Close]
BLAST of Cucsa.220200 vs. TrEMBL
Match: A0A0A0K4W4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G075020 PE=3 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 3.6e-60
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 1 

Query: 1   MATASATLSTAMSSAAPISAGSRRQRQTNAHFISGLNSFSGLKAHNNVVSLGLPVCADQS 60
           MATASATLSTAMSSAAPISAGSRRQRQTNAHFISGLNSFSGLKAHNNVVSLGLPVCADQS
Sbjct: 77  MATASATLSTAMSSAAPISAGSRRQRQTNAHFISGLNSFSGLKAHNNVVSLGLPVCADQS 136

Query: 61  FAKIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLIGVAVGFVLLRIEAS 120
           FAKIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLIGVAVGFVLLRIEAS
Sbjct: 137 FAKIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLIGVAVGFVLLRIEAS 196

Query: 121 VEEAE 126
           VEEAE
Sbjct: 197 VEEAE 201

[Close]
BLAST of Cucsa.220200 vs. TrEMBL
Match: F6HQF8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0063g01460 PE=3 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 4.4e-42
Identity = 97/127 (76.38%), Postives = 109/127 (85.83%), Query Frame = 1 

Query: 1    MATASATLSTAMSSAAPISAGSR--RQRQTNAHFISGLNSFSGLKAHNNVVSLGLPVCAD 60
            MATASATLS +  SAA I+   R  ++R+TN HFI GLNSF GLKA+N+V SLGLPVC +
Sbjct: 1046 MATASATLSPSTFSAAAIAGLGRTSQRRKTNVHFIGGLNSFDGLKAYNSVASLGLPVCTE 1105

Query: 61   QSFAKIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLIGVAVGFVLLRIE 120
            QSFAKIV SLK PS+GKG+ GGGALSSTCNA GEIFRIAAI+NGLVL+GVAVGFVLLRIE
Sbjct: 1106 QSFAKIVGSLKSPSQGKGR-GGGALSSTCNAVGEIFRIAAIMNGLVLVGVAVGFVLLRIE 1165

Query: 121  ASVEEAE 126
            ASVEEAE
Sbjct: 1166 ASVEEAE 1171

[Close]
BLAST of Cucsa.220200 vs. TrEMBL
Match: A5AN62_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027615 PE=3 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 4.8e-41
Identity = 96/127 (75.59%), Postives = 108/127 (85.04%), Query Frame = 1 

Query: 1   MATASATLSTAMSSAAPISAGSR--RQRQTNAHFISGLNSFSGLKAHNNVVSLGLPVCAD 60
           MATASATLS +  SAA I+   R  ++R+TN HFI GLNSF GLKA+N+V SLGLPVC +
Sbjct: 1   MATASATLSPSTFSAAAIAGLGRTSQRRKTNVHFIGGLNSFDGLKAYNSVASLGLPVCTE 60

Query: 61  QSFAKIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLIGVAVGFVLLRIE 120
           QSFAKIV SLK  S+GKG+ GGGALSSTCNA GEIFRIAAI+NGLVL+GVAVGFVLLRIE
Sbjct: 61  QSFAKIVXSLKSXSQGKGR-GGGALSSTCNAVGEIFRIAAIMNGLVLVGVAVGFVLLRIE 120

Query: 121 ASVEEAE 126
           ASVEEAE
Sbjct: 121 ASVEEAE 126

[Close]
BLAST of Cucsa.220200 vs. TrEMBL
Match: A0A0D2NR38_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G214600 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 7.0e-40
Identity = 93/124 (75.00%), Postives = 107/124 (86.29%), Query Frame = 1 

Query: 3   TASATLSTAMSSAAPISAGS-RRQRQTNAHFISGLNSFSGLKAHNNVVSLGLPVCADQSF 62
           TASATLS    + AP S G+ RR+ + N ++I+GLNSF GLKAHNNVVSLG PVC +QSF
Sbjct: 4   TASATLSPP--TLAPASVGNPRRRTKVNVNYITGLNSFGGLKAHNNVVSLGQPVCIEQSF 63

Query: 63  AKIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLIGVAVGFVLLRIEASV 122
           AK+VSSL+ PSKGKG +GGGALSSTCNA GEIFRIAAI+NGLVL+GVAVGFVLLRIEAS+
Sbjct: 64  AKVVSSLRAPSKGKG-SGGGALSSTCNAVGEIFRIAAIMNGLVLVGVAVGFVLLRIEASL 123

Query: 123 EEAE 126
           EEAE
Sbjct: 124 EEAE 124

[Close]
BLAST of Cucsa.220200 vs. TrEMBL
Match: A0A061DXT9_THECC (Cytochrome P450 82C4, putative isoform 2 OS=Theobroma cacao GN=TCM_046710 PE=3 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 1.2e-39
Identity = 92/125 (73.60%), Postives = 104/125 (83.20%), Query Frame = 1 

Query: 1   MATASATLSTAMSSAAPISAGSRRQRQTNAHFISGLNSFSGLKAHNNVVSLGLPVCADQS 60
           MATASATLS    +AA + +  RR    N  +ISGLN+F GLKAHNNVVSLGLPVC +QS
Sbjct: 1   MATASATLSPVTLAAATVISPGRRT-SVNVKYISGLNAFGGLKAHNNVVSLGLPVCTEQS 60

Query: 61  FAKIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLIGVAVGFVLLRIEAS 120
           FAK+VSSL+ PSKGKG   GGALSSTCNA GEIFRIAAI+NGLVL+GVAVGFVLLRIEAS
Sbjct: 61  FAKVVSSLRAPSKGKG---GGALSSTCNAVGEIFRIAAIMNGLVLVGVAVGFVLLRIEAS 120

Query: 121 VEEAE 126
           +EEA+
Sbjct: 121 LEEAD 121

[Close]
BLAST of Cucsa.220200 vs. TAIR10
Match: AT2G26500.2 (AT2G26500.2 cytochrome b6f complex subunit (petM), putative)

HSP 1 Score: 125.2 bits (313), Expect = 2.9e-29
Identity = 70/126 (55.56%), Postives = 88/126 (69.84%), Query Frame = 1 

Query: 2   ATASATLSTAMSSAAPISAGSRRQRQTNAHFISGLNSFSGLKAHNN-VVSLGLPVCADQS 61
           A A A +S   S     S  ++++ +    +I+GLNS+ GLKA NN VVS+G P+C +Q 
Sbjct: 4   AAAPAVISWTRSGIVSKSGQTQKKSEMKVSYITGLNSYGGLKAQNNKVVSMGSPLCTEQC 63

Query: 62  FAKIVSSLKYPSKGKGKNG-GGALSSTCNAAGEIFRIAAIINGLVLIGVAVGFVLLRIEA 121
           FA +V SLK      G+ G GGALS+TCNA GEIF+IAAI+N L L+GVAVGFVLLRIE 
Sbjct: 64  FANVVMSLK------GRRGNGGALSTTCNAVGEIFKIAAIMNALTLVGVAVGFVLLRIET 123

Query: 122 SVEEAE 126
           SVEEAE
Sbjct: 124 SVEEAE 123

[Close]
BLAST of Cucsa.220200 vs. NCBI nr
Match: gi|449438446|ref|XP_004136999.1| (PREDICTED: uncharacterized protein LOC101210164 [Cucumis sativus])

HSP 1 Score: 238.8 bits (608), Expect = 5.1e-60
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 1 

Query: 1   MATASATLSTAMSSAAPISAGSRRQRQTNAHFISGLNSFSGLKAHNNVVSLGLPVCADQS 60
           MATASATLSTAMSSAAPISAGSRRQRQTNAHFISGLNSFSGLKAHNNVVSLGLPVCADQS
Sbjct: 45  MATASATLSTAMSSAAPISAGSRRQRQTNAHFISGLNSFSGLKAHNNVVSLGLPVCADQS 104

Query: 61  FAKIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLIGVAVGFVLLRIEAS 120
           FAKIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLIGVAVGFVLLRIEAS
Sbjct: 105 FAKIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLIGVAVGFVLLRIEAS 164

Query: 121 VEEAE 126
           VEEAE
Sbjct: 165 VEEAE 169

[Close]
BLAST of Cucsa.220200 vs. NCBI nr
Match: gi|700188736|gb|KGN43969.1| (hypothetical protein Csa_7G075020 [Cucumis sativus])

HSP 1 Score: 238.8 bits (608), Expect = 5.1e-60
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 1 

Query: 1   MATASATLSTAMSSAAPISAGSRRQRQTNAHFISGLNSFSGLKAHNNVVSLGLPVCADQS 60
           MATASATLSTAMSSAAPISAGSRRQRQTNAHFISGLNSFSGLKAHNNVVSLGLPVCADQS
Sbjct: 77  MATASATLSTAMSSAAPISAGSRRQRQTNAHFISGLNSFSGLKAHNNVVSLGLPVCADQS 136

Query: 61  FAKIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLIGVAVGFVLLRIEAS 120
           FAKIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLIGVAVGFVLLRIEAS
Sbjct: 137 FAKIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLIGVAVGFVLLRIEAS 196

Query: 121 VEEAE 126
           VEEAE
Sbjct: 197 VEEAE 201

[Close]
BLAST of Cucsa.220200 vs. NCBI nr
Match: gi|659109813|ref|XP_008454894.1| (PREDICTED: uncharacterized protein LOC103495201 [Cucumis melo])

HSP 1 Score: 231.1 bits (588), Expect = 1.1e-57
Identity = 119/125 (95.20%), Postives = 123/125 (98.40%), Query Frame = 1 

Query: 1   MATASATLSTAMSSAAPISAGSRRQRQTNAHFISGLNSFSGLKAHNNVVSLGLPVCADQS 60
           MATASATLSTAMS+AAPI+AGSRRQRQTN H+I+GLNSF GLKAHNNVVSLGLPVCADQS
Sbjct: 1   MATASATLSTAMSTAAPIAAGSRRQRQTNVHYITGLNSFGGLKAHNNVVSLGLPVCADQS 60

Query: 61  FAKIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLIGVAVGFVLLRIEAS 120
           FAKIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLIGVAVGFVLLRIEAS
Sbjct: 61  FAKIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLIGVAVGFVLLRIEAS 120

Query: 121 VEEAE 126
           VEEAE
Sbjct: 121 VEEAE 125

[Close]
BLAST of Cucsa.220200 vs. NCBI nr
Match: gi|731383751|ref|XP_010647885.1| (PREDICTED: uncharacterized protein LOC104877276 [Vitis vinifera])

HSP 1 Score: 178.7 bits (452), Expect = 6.3e-42
Identity = 97/127 (76.38%), Postives = 109/127 (85.83%), Query Frame = 1 

Query: 1   MATASATLSTAMSSAAPISAGSR--RQRQTNAHFISGLNSFSGLKAHNNVVSLGLPVCAD 60
           MATASATLS +  SAA I+   R  ++R+TN HFI GLNSF GLKA+N+V SLGLPVC +
Sbjct: 1   MATASATLSPSTFSAAAIAGLGRTSQRRKTNVHFIGGLNSFDGLKAYNSVASLGLPVCTE 60

Query: 61  QSFAKIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLIGVAVGFVLLRIE 120
           QSFAKIV SLK PS+GKG+ GGGALSSTCNA GEIFRIAAI+NGLVL+GVAVGFVLLRIE
Sbjct: 61  QSFAKIVGSLKSPSQGKGR-GGGALSSTCNAVGEIFRIAAIMNGLVLVGVAVGFVLLRIE 120

Query: 121 ASVEEAE 126
           ASVEEAE
Sbjct: 121 ASVEEAE 126

[Close]
BLAST of Cucsa.220200 vs. NCBI nr
Match: gi|147855053|emb|CAN82364.1| (hypothetical protein VITISV_027615 [Vitis vinifera])

HSP 1 Score: 175.3 bits (443), Expect = 7.0e-41
Identity = 96/127 (75.59%), Postives = 108/127 (85.04%), Query Frame = 1 

Query: 1   MATASATLSTAMSSAAPISAGSR--RQRQTNAHFISGLNSFSGLKAHNNVVSLGLPVCAD 60
           MATASATLS +  SAA I+   R  ++R+TN HFI GLNSF GLKA+N+V SLGLPVC +
Sbjct: 1   MATASATLSPSTFSAAAIAGLGRTSQRRKTNVHFIGGLNSFDGLKAYNSVASLGLPVCTE 60

Query: 61  QSFAKIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLIGVAVGFVLLRIE 120
           QSFAKIV SLK  S+GKG+ GGGALSSTCNA GEIFRIAAI+NGLVL+GVAVGFVLLRIE
Sbjct: 61  QSFAKIVXSLKSXSQGKGR-GGGALSSTCNAVGEIFRIAAIMNGLVLVGVAVGFVLLRIE 120

Query: 121 ASVEEAE 126
           ASVEEAE
Sbjct: 121 ASVEEAE 126

The following BLAST results are available for this feature:
BLAST of Cucsa.220200 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PETM_SPIOL9.2e-0980.56Cytochrome b6-f complex subunit 7 (Fragment) OS=Spinacia oleracea GN=petM PE=1 S... [more]
BLAST of Cucsa.220200 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K4W4_CUCSA3.6e-60100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G075020 PE=3 SV=1[more]
F6HQF8_VITVI4.4e-4276.38Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0063g01460 PE=3 SV=... [more]
A5AN62_VITVI4.8e-4175.59Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027615 PE=3 SV=1[more]
A0A0D2NR38_GOSRA7.0e-4075.00Uncharacterized protein OS=Gossypium raimondii GN=B456_002G214600 PE=3 SV=1[more]
A0A061DXT9_THECC1.2e-3973.60Cytochrome P450 82C4, putative isoform 2 OS=Theobroma cacao GN=TCM_046710 PE=3 S... [more]
BLAST of Cucsa.220200 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G26500.22.9e-2955.56 cytochrome b6f complex subunit (petM), putative[more]
BLAST of Cucsa.220200 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449438446|ref|XP_004136999.1|5.1e-60100.00PREDICTED: uncharacterized protein LOC101210164 [Cucumis sativus][more]
gi|700188736|gb|KGN43969.1|5.1e-60100.00hypothetical protein Csa_7G075020 [Cucumis sativus][more]
gi|659109813|ref|XP_008454894.1|1.1e-5795.20PREDICTED: uncharacterized protein LOC103495201 [Cucumis melo][more]
gi|731383751|ref|XP_010647885.1|6.3e-4276.38PREDICTED: uncharacterized protein LOC104877276 [Vitis vinifera][more]
gi|147855053|emb|CAN82364.1|7.0e-4175.59hypothetical protein VITISV_027615 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012595PetM_cyt_b6/f_cplx_su7
Vocabulary: Cellular Component
TermDefinition
GO:0009512cytochrome b6f complex
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0009512 cytochrome b6f complex
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.220200.1Cucsa.220200.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012595PetM of cytochrome b6/f complex subunit 7HAMAPMF_00396Cytb6_f_PetMcoord: 89..121
score: 13
IPR012595PetM of cytochrome b6/f complex subunit 7PFAMPF08041PetMcoord: 91..118
score: 9.8
NoneNo IPR availablePANTHERPTHR34951FAMILY NOT NAMEDcoord: 2..125
score: 1.2
NoneNo IPR availablePANTHERPTHR34951:SF1SUBFAMILY NOT NAMEDcoord: 2..125
score: 1.2
NoneNo IPR availableunknownSSF103441PetM subunit of the cytochrome b6f complexcoord: 90..122
score: 4.45

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.220200Cla015978Watermelon (97103) v1cgywmB427
Cucsa.220200Csa7G075020Cucumber (Chinese Long) v2cgycuB322
Cucsa.220200MELO3C018419Melon (DHL92) v3.5.1cgymeB379
Cucsa.220200ClCG02G005540Watermelon (Charleston Gray)cgywcgB396
Cucsa.220200CSPI07G07990Wild cucumber (PI 183967)cgycpiB336
Cucsa.220200CmaCh19G006320Cucurbita maxima (Rimu)cgycmaB0624
Cucsa.220200CmoCh19G006480Cucurbita moschata (Rifu)cgycmoB0627
Cucsa.220200Lsi11G010420Bottle gourd (USVL1VR-Ls)cgylsiB361
Cucsa.220200MELO3C018419.2Melon (DHL92) v3.6.1cgymedB377
Cucsa.220200CsaV3_7G010090Cucumber (Chinese Long) v3cgycucB342
Cucsa.220200Cla97C02G032530Watermelon (97103) v2cgywmbB395
Cucsa.220200Bhi05G001029Wax gourdcgywgoB446
Cucsa.220200Carg22042Silver-seed gourdcarcgyB0251
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.220200Cucumber (Chinese Long) v3cgycucB337
Cucsa.220200Watermelon (97103) v2cgywmbB400
Cucsa.220200Cucurbita maxima (Rimu)cgycmaB0620
Cucsa.220200Cucurbita maxima (Rimu)cgycmaB0630
Cucsa.220200Cucurbita moschata (Rifu)cgycmoB0624
Cucsa.220200Cucurbita moschata (Rifu)cgycmoB0626
Cucsa.220200Cucurbita moschata (Rifu)cgycmoB0633
Cucsa.220200Wild cucumber (PI 183967)cgycpiB332
Cucsa.220200Cucumber (Chinese Long) v2cgycuB319
Cucsa.220200Melon (DHL92) v3.5.1cgymeB384
Cucsa.220200Watermelon (Charleston Gray)cgywcgB394
Cucsa.220200Watermelon (97103) v1cgywmB418
Cucsa.220200Cucurbita pepo (Zucchini)cgycpeB0594
Cucsa.220200Cucurbita pepo (Zucchini)cgycpeB0602
Cucsa.220200Bottle gourd (USVL1VR-Ls)cgylsiB360
Cucsa.220200Melon (DHL92) v3.6.1cgymedB382
Cucsa.220200Silver-seed gourdcarcgyB0920