Carg22042 (gene) Silver-seed gourd

NameCarg22042
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionCytochrome b6-f complex subunit 7
LocationCucurbita_argyrosperma_scaffold_175 : 283351 .. 283731 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGCTACACCCTCCGCTACCCTCTCGCCGCCCATATCCACCGCCGCCCCCATCGCCGCCGGCTCTAGGCGGCAGAGGAACACCAATGTCCATTACATCACTGGCCTCAACTCCTTTAGTGGCTTGAAAGCTCACAACAATATCACCTCCTTGGGCCTTCCCGTTTGTGCCGATCAGTCATTTGCTAACATTGTGAGCTCTTTGAAATACCCATCAAAGGGTAAAGGCAAAAACGGCGGTGGGGCTCTCTCTTCTACCTGTAATGCCGCCGGTGAGATTTTCAGGATCGCCGCCATTATCAATGGGCTTGTTCTTGTTGGAGTGGCGGTGGGGTTTGTTCTTCTCAGGATTGAGGCATCTGTGGAGGAGGCTGAGTGA

mRNA sequence

ATGGCGGCTACACCCTCCGCTACCCTCTCGCCGCCCATATCCACCGCCGCCCCCATCGCCGCCGGCTCTAGGCGGCAGAGGAACACCAATGTCCATTACATCACTGGCCTCAACTCCTTTAGTGGCTTGAAAGCTCACAACAATATCACCTCCTTGGGCCTTCCCGTTTGTGCCGATCAGTCATTTGCTAACATTGTGAGCTCTTTGAAATACCCATCAAAGGGTAAAGGCAAAAACGGCGGTGGGGCTCTCTCTTCTACCTGTAATGCCGCCGGTGAGATTTTCAGGATCGCCGCCATTATCAATGGGCTTGTTCTTGTTGGAGTGGCGGTGGGGTTTGTTCTTCTCAGGATTGAGGCATCTGTGGAGGAGGCTGAGTGA

Coding sequence (CDS)

ATGGCGGCTACACCCTCCGCTACCCTCTCGCCGCCCATATCCACCGCCGCCCCCATCGCCGCCGGCTCTAGGCGGCAGAGGAACACCAATGTCCATTACATCACTGGCCTCAACTCCTTTAGTGGCTTGAAAGCTCACAACAATATCACCTCCTTGGGCCTTCCCGTTTGTGCCGATCAGTCATTTGCTAACATTGTGAGCTCTTTGAAATACCCATCAAAGGGTAAAGGCAAAAACGGCGGTGGGGCTCTCTCTTCTACCTGTAATGCCGCCGGTGAGATTTTCAGGATCGCCGCCATTATCAATGGGCTTGTTCTTGTTGGAGTGGCGGTGGGGTTTGTTCTTCTCAGGATTGAGGCATCTGTGGAGGAGGCTGAGTGA

Protein sequence

MAATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQSFANIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEASVEEAE
BLAST of Carg22042 vs. NCBI nr
Match: XP_022952989.1 (uncharacterized protein LOC111455503 [Cucurbita moschata])

HSP 1 Score: 233.4 bits (594), Expect = 4.2e-58
Identity = 125/126 (99.21%), Postives = 126/126 (100.00%), Query Frame = 0

Query: 1   MAATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQ 60
           MAATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQ
Sbjct: 1   MAATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQ 60

Query: 61  SFANIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEA 120
           SFA+IVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEA
Sbjct: 61  SFASIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEA 120

Query: 121 SVEEAE 127
           SVEEAE
Sbjct: 121 SVEEAE 126

BLAST of Carg22042 vs. NCBI nr
Match: XP_023554105.1 (uncharacterized protein LOC111811473 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 226.1 bits (575), Expect = 6.7e-56
Identity = 122/126 (96.83%), Postives = 122/126 (96.83%), Query Frame = 0

Query: 1   MAATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQ 60
           MAAT SATLSPPISTAAPIAAGSRRQRN NVHYITGLNSF GLKAHNNI SLGLPVCADQ
Sbjct: 1   MAATASATLSPPISTAAPIAAGSRRQRNANVHYITGLNSFGGLKAHNNIFSLGLPVCADQ 60

Query: 61  SFANIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEA 120
           SFANIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEA
Sbjct: 61  SFANIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEA 120

Query: 121 SVEEAE 127
           SVEEAE
Sbjct: 121 SVEEAE 126

BLAST of Carg22042 vs. NCBI nr
Match: XP_022972366.1 (uncharacterized protein LOC111470941 [Cucurbita maxima])

HSP 1 Score: 224.9 bits (572), Expect = 1.5e-55
Identity = 122/126 (96.83%), Postives = 122/126 (96.83%), Query Frame = 0

Query: 1   MAATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQ 60
           MAAT SATLSP ISTAAPIAAGSRRQRNTNVHYITGLNSF GLKAHNNI SLGLPVCADQ
Sbjct: 1   MAATASATLSPAISTAAPIAAGSRRQRNTNVHYITGLNSFGGLKAHNNIFSLGLPVCADQ 60

Query: 61  SFANIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEA 120
           SFANIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEA
Sbjct: 61  SFANIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEA 120

Query: 121 SVEEAE 127
           SVEEAE
Sbjct: 121 SVEEAE 126

BLAST of Carg22042 vs. NCBI nr
Match: XP_008454894.1 (PREDICTED: uncharacterized protein LOC103495201 [Cucumis melo])

HSP 1 Score: 213.0 bits (541), Expect = 5.9e-52
Identity = 114/124 (91.94%), Postives = 117/124 (94.35%), Query Frame = 0

Query: 3   ATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQSF 62
           AT SATLS  +STAAPIAAGSRRQR TNVHYITGLNSF GLKAHNN+ SLGLPVCADQSF
Sbjct: 2   ATASATLSTAMSTAAPIAAGSRRQRQTNVHYITGLNSFGGLKAHNNVVSLGLPVCADQSF 61

Query: 63  ANIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEASV 122
           A IVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVL+GVAVGFVLLRIEASV
Sbjct: 62  AKIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLIGVAVGFVLLRIEASV 121

Query: 123 EEAE 127
           EEAE
Sbjct: 122 EEAE 125

BLAST of Carg22042 vs. NCBI nr
Match: XP_004136999.1 (PREDICTED: uncharacterized protein LOC101210164 [Cucumis sativus])

HSP 1 Score: 207.2 bits (526), Expect = 3.2e-50
Identity = 110/124 (88.71%), Postives = 117/124 (94.35%), Query Frame = 0

Query: 3   ATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQSF 62
           AT SATLS  +S+AAPI+AGSRRQR TN H+I+GLNSFSGLKAHNN+ SLGLPVCADQSF
Sbjct: 46  ATASATLSTAMSSAAPISAGSRRQRQTNAHFISGLNSFSGLKAHNNVVSLGLPVCADQSF 105

Query: 63  ANIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEASV 122
           A IVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVL+GVAVGFVLLRIEASV
Sbjct: 106 AKIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLIGVAVGFVLLRIEASV 165

Query: 123 EEAE 127
           EEAE
Sbjct: 166 EEAE 169

BLAST of Carg22042 vs. TAIR10
Match: AT2G26500.2 (cytochrome b6f complex subunit (petM), putative)

HSP 1 Score: 114.4 bits (285), Expect = 5.1e-26
Identity = 73/127 (57.48%), Postives = 89/127 (70.08%), Query Frame = 0

Query: 2   AATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNN-ITSLGLPVCADQ 61
           AA P A +S   S     +  ++++    V YITGLNS+ GLKA NN + S+G P+C +Q
Sbjct: 4   AAAP-AVISWTRSGIVSKSGQTQKKSEMKVSYITGLNSYGGLKAQNNKVVSMGSPLCTEQ 63

Query: 62  SFANIVSSLKYPSKGKGKNG-GGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIE 121
            FAN+V SL      KG+ G GGALS+TCNA GEIF+IAAI+N L LVGVAVGFVLLRIE
Sbjct: 64  CFANVVMSL------KGRRGNGGALSTTCNAVGEIFKIAAIMNALTLVGVAVGFVLLRIE 123

Query: 122 ASVEEAE 127
            SVEEAE
Sbjct: 124 TSVEEAE 123

BLAST of Carg22042 vs. Swiss-Prot
Match: sp|P80883|PETM_SPIOL (Cytochrome b6-f complex subunit 7 (Fragment) OS=Spinacia oleracea OX=3562 GN=petM PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 7.9e-08
Identity = 30/36 (83.33%), Postives = 34/36 (94.44%), Query Frame = 0

Query: 89  NAAGEIFRIAAIINGLVLVGVAVGFVLLRIEASVEE 125
           NAA EIFRIAA++NGL LVGVA+GFVLLRIEA+VEE
Sbjct: 1   NAAAEIFRIAAVMNGLTLVGVAIGFVLLRIEATVEE 36

BLAST of Carg22042 vs. TrEMBL
Match: tr|A0A1S3C0U4|A0A1S3C0U4_CUCME (uncharacterized protein LOC103495201 OS=Cucumis melo OX=3656 GN=LOC103495201 PE=3 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 3.9e-52
Identity = 114/124 (91.94%), Postives = 117/124 (94.35%), Query Frame = 0

Query: 3   ATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQSF 62
           AT SATLS  +STAAPIAAGSRRQR TNVHYITGLNSF GLKAHNN+ SLGLPVCADQSF
Sbjct: 2   ATASATLSTAMSTAAPIAAGSRRQRQTNVHYITGLNSFGGLKAHNNVVSLGLPVCADQSF 61

Query: 63  ANIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEASV 122
           A IVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVL+GVAVGFVLLRIEASV
Sbjct: 62  AKIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLIGVAVGFVLLRIEASV 121

Query: 123 EEAE 127
           EEAE
Sbjct: 122 EEAE 125

BLAST of Carg22042 vs. TrEMBL
Match: tr|A0A0A0K4W4|A0A0A0K4W4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G075020 PE=3 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 2.1e-50
Identity = 110/124 (88.71%), Postives = 117/124 (94.35%), Query Frame = 0

Query: 3   ATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQSF 62
           AT SATLS  +S+AAPI+AGSRRQR TN H+I+GLNSFSGLKAHNN+ SLGLPVCADQSF
Sbjct: 78  ATASATLSTAMSSAAPISAGSRRQRQTNAHFISGLNSFSGLKAHNNVVSLGLPVCADQSF 137

Query: 63  ANIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEASV 122
           A IVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVL+GVAVGFVLLRIEASV
Sbjct: 138 AKIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLIGVAVGFVLLRIEASV 197

Query: 123 EEAE 127
           EEAE
Sbjct: 198 EEAE 201

BLAST of Carg22042 vs. TrEMBL
Match: tr|A0A0D2NR38|A0A0D2NR38_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_002G214600 PE=3 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 2.9e-39
Identity = 97/127 (76.38%), Postives = 108/127 (85.04%), Query Frame = 0

Query: 1   MAATPSATLSPPISTAAPIAAGS-RRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCAD 60
           MA T SATLSPP  T AP + G+ RR+   NV+YITGLNSF GLKAHNN+ SLG PVC +
Sbjct: 1   MATTASATLSPP--TLAPASVGNPRRRTKVNVNYITGLNSFGGLKAHNNVVSLGQPVCIE 60

Query: 61  QSFANIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIE 120
           QSFA +VSSL+ PSKGKG +GGGALSSTCNA GEIFRIAAI+NGLVLVGVAVGFVLLRIE
Sbjct: 61  QSFAKVVSSLRAPSKGKG-SGGGALSSTCNAVGEIFRIAAIMNGLVLVGVAVGFVLLRIE 120

Query: 121 ASVEEAE 127
           AS+EEAE
Sbjct: 121 ASLEEAE 124

BLAST of Carg22042 vs. TrEMBL
Match: tr|A0A1U8JLX5|A0A1U8JLX5_GOSHI (uncharacterized protein LOC107908570 OS=Gossypium hirsutum OX=3635 GN=LOC107908570 PE=3 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 4.2e-38
Identity = 93/125 (74.40%), Postives = 105/125 (84.00%), Query Frame = 0

Query: 3   ATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQSF 62
           AT S T +PP+ TAA      +++ NTNV+YITGLNSF GLKAHN + SLG  VC +QSF
Sbjct: 2   ATASVTYTPPMLTAA--TTNPKKKTNTNVNYITGLNSFGGLKAHNKVVSLGQRVCTEQSF 61

Query: 63  ANIVSSLKYPSKGK-GKNGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEAS 122
           AN+VSSLK P+KGK GK+GGGALSSTCNA GEIFRIAAI+NGLVLVGVAVGFVLLRIEAS
Sbjct: 62  ANVVSSLKAPTKGKTGKSGGGALSSTCNAVGEIFRIAAIMNGLVLVGVAVGFVLLRIEAS 121

Query: 123 VEEAE 127
           VEEAE
Sbjct: 122 VEEAE 124

BLAST of Carg22042 vs. TrEMBL
Match: tr|A0A1U8KWH3|A0A1U8KWH3_GOSHI (uncharacterized protein LOC107921427 OS=Gossypium hirsutum OX=3635 GN=LOC107921427 PE=3 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 4.2e-38
Identity = 94/126 (74.60%), Postives = 104/126 (82.54%), Query Frame = 0

Query: 1   MAATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQ 60
           MA T SAT SPP   AA +    RR+   NV+YITGLNSF GLKAHNN+ SLG PVC +Q
Sbjct: 1   MATTASATPSPPTLAAASV-GNPRRRTKVNVNYITGLNSFGGLKAHNNVVSLGQPVCIEQ 60

Query: 61  SFANIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEA 120
           SFA +VSSL+ PSKGKG +GGGALSSTCNA GEIFRIAAI+NGLVLVGVAVGFVLLRIEA
Sbjct: 61  SFAKVVSSLRAPSKGKG-SGGGALSSTCNAVGEIFRIAAIMNGLVLVGVAVGFVLLRIEA 120

Query: 121 SVEEAE 127
           S+EEAE
Sbjct: 121 SLEEAE 124

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022952989.14.2e-5899.21uncharacterized protein LOC111455503 [Cucurbita moschata][more]
XP_023554105.16.7e-5696.83uncharacterized protein LOC111811473 [Cucurbita pepo subsp. pepo][more]
XP_022972366.11.5e-5596.83uncharacterized protein LOC111470941 [Cucurbita maxima][more]
XP_008454894.15.9e-5291.94PREDICTED: uncharacterized protein LOC103495201 [Cucumis melo][more]
XP_004136999.13.2e-5088.71PREDICTED: uncharacterized protein LOC101210164 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
AT2G26500.25.1e-2657.48cytochrome b6f complex subunit (petM), putative[more]
Match NameE-valueIdentityDescription
sp|P80883|PETM_SPIOL7.9e-0883.33Cytochrome b6-f complex subunit 7 (Fragment) OS=Spinacia oleracea OX=3562 GN=pet... [more]
Match NameE-valueIdentityDescription
tr|A0A1S3C0U4|A0A1S3C0U4_CUCME3.9e-5291.94uncharacterized protein LOC103495201 OS=Cucumis melo OX=3656 GN=LOC103495201 PE=... [more]
tr|A0A0A0K4W4|A0A0A0K4W4_CUCSA2.1e-5088.71Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G075020 PE=3 SV=1[more]
tr|A0A0D2NR38|A0A0D2NR38_GOSRA2.9e-3976.38Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_002G214600 PE=3 ... [more]
tr|A0A1U8JLX5|A0A1U8JLX5_GOSHI4.2e-3874.40uncharacterized protein LOC107908570 OS=Gossypium hirsutum OX=3635 GN=LOC1079085... [more]
tr|A0A1U8KWH3|A0A1U8KWH3_GOSHI4.2e-3874.60uncharacterized protein LOC107921427 OS=Gossypium hirsutum OX=3635 GN=LOC1079214... [more]
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0009512cytochrome b6f complex
Vocabulary: INTERPRO
TermDefinition
IPR012595PetM_cyt_b6/f_cplx_su7
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0009512 cytochrome b6f complex
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg22042-RACarg22042-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012595PetM of cytochrome b6/f complex subunit 7PFAMPF08041PetMcoord: 92..119
e-value: 2.0E-10
score: 39.9
IPR012595PetM of cytochrome b6/f complex subunit 7HAMAPMF_00396Cytb6_f_PetMcoord: 90..122
score: 12.775
NoneNo IPR availablePANTHERPTHR34951FAMILY NOT NAMEDcoord: 14..126
NoneNo IPR availableSUPERFAMILYSSF103441PetM subunit of the cytochrome b6f complexcoord: 91..123