CmaCh19G006320 (gene) Cucurbita maxima (Rimu)

NameCmaCh19G006320
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionCytochrome b6-f complex subunit 7
LocationCma_Chr19 : 6784625 .. 6785005 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGCTACAGCCTCCGCTACCCTCTCGCCGGCCATATCCACCGCCGCCCCCATCGCCGCCGGCTCTAGGCGGCAGAGGAACACCAATGTCCATTACATCACTGGCCTCAACTCCTTTGGTGGCTTGAAAGCTCACAACAATATCTTCTCCTTGGGCCTTCCCGTTTGTGCCGATCAGTCATTTGCTAACATTGTGAGTTCTTTGAAATACCCATCAAAGGGAAAAGGCAAAAACGGCGGTGGGGCTCTCTCTTCTACCTGTAATGCCGCCGGTGAGATTTTCAGGATCGCCGCCATTATCAATGGGCTTGTTCTTGTTGGAGTGGCGGTGGGGTTTGTTCTTCTCAGGATTGAGGCATCTGTGGAGGAGGCAGAGTGA

mRNA sequence

ATGGCGGCTACAGCCTCCGCTACCCTCTCGCCGGCCATATCCACCGCCGCCCCCATCGCCGCCGGCTCTAGGCGGCAGAGGAACACCAATGTCCATTACATCACTGGCCTCAACTCCTTTGGTGGCTTGAAAGCTCACAACAATATCTTCTCCTTGGGCCTTCCCGTTTGTGCCGATCAGTCATTTGCTAACATTGTGAGTTCTTTGAAATACCCATCAAAGGGAAAAGGCAAAAACGGCGGTGGGGCTCTCTCTTCTACCTGTAATGCCGCCGGTGAGATTTTCAGGATCGCCGCCATTATCAATGGGCTTGTTCTTGTTGGAGTGGCGGTGGGGTTTGTTCTTCTCAGGATTGAGGCATCTGTGGAGGAGGCAGAGTGA

Coding sequence (CDS)

ATGGCGGCTACAGCCTCCGCTACCCTCTCGCCGGCCATATCCACCGCCGCCCCCATCGCCGCCGGCTCTAGGCGGCAGAGGAACACCAATGTCCATTACATCACTGGCCTCAACTCCTTTGGTGGCTTGAAAGCTCACAACAATATCTTCTCCTTGGGCCTTCCCGTTTGTGCCGATCAGTCATTTGCTAACATTGTGAGTTCTTTGAAATACCCATCAAAGGGAAAAGGCAAAAACGGCGGTGGGGCTCTCTCTTCTACCTGTAATGCCGCCGGTGAGATTTTCAGGATCGCCGCCATTATCAATGGGCTTGTTCTTGTTGGAGTGGCGGTGGGGTTTGTTCTTCTCAGGATTGAGGCATCTGTGGAGGAGGCAGAGTGA

Protein sequence

MAATASATLSPAISTAAPIAAGSRRQRNTNVHYITGLNSFGGLKAHNNIFSLGLPVCADQSFANIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEASVEEAE
BLAST of CmaCh19G006320 vs. Swiss-Prot
Match: PETM_SPIOL (Cytochrome b6-f complex subunit 7 (Fragment) OS=Spinacia oleracea GN=petM PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 7.8e-08
Identity = 30/36 (83.33%), Postives = 34/36 (94.44%), Query Frame = 1

Query: 89  NAAGEIFRIAAIINGLVLVGVAVGFVLLRIEASVEE 125
           NAA EIFRIAA++NGL LVGVA+GFVLLRIEA+VEE
Sbjct: 1   NAAAEIFRIAAVMNGLTLVGVAIGFVLLRIEATVEE 36

BLAST of CmaCh19G006320 vs. TrEMBL
Match: A0A0A0K4W4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G075020 PE=3 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 5.2e-51
Identity = 111/124 (89.52%), Postives = 118/124 (95.16%), Query Frame = 1

Query: 3   ATASATLSPAISTAAPIAAGSRRQRNTNVHYITGLNSFGGLKAHNNIFSLGLPVCADQSF 62
           ATASATLS A+S+AAPI+AGSRRQR TN H+I+GLNSF GLKAHNN+ SLGLPVCADQSF
Sbjct: 78  ATASATLSTAMSSAAPISAGSRRQRQTNAHFISGLNSFSGLKAHNNVVSLGLPVCADQSF 137

Query: 63  ANIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEASV 122
           A IVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVL+GVAVGFVLLRIEASV
Sbjct: 138 AKIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLIGVAVGFVLLRIEASV 197

Query: 123 EEAE 127
           EEAE
Sbjct: 198 EEAE 201

BLAST of CmaCh19G006320 vs. TrEMBL
Match: A0A0D2NR38_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G214600 PE=3 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 1.6e-39
Identity = 98/127 (77.17%), Postives = 109/127 (85.83%), Query Frame = 1

Query: 1   MAATASATLSPAISTAAPIAAGS-RRQRNTNVHYITGLNSFGGLKAHNNIFSLGLPVCAD 60
           MA TASATLSP   T AP + G+ RR+   NV+YITGLNSFGGLKAHNN+ SLG PVC +
Sbjct: 1   MATTASATLSP--PTLAPASVGNPRRRTKVNVNYITGLNSFGGLKAHNNVVSLGQPVCIE 60

Query: 61  QSFANIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIE 120
           QSFA +VSSL+ PSKGKG +GGGALSSTCNA GEIFRIAAI+NGLVLVGVAVGFVLLRIE
Sbjct: 61  QSFAKVVSSLRAPSKGKG-SGGGALSSTCNAVGEIFRIAAIMNGLVLVGVAVGFVLLRIE 120

Query: 121 ASVEEAE 127
           AS+EEAE
Sbjct: 121 ASLEEAE 124

BLAST of CmaCh19G006320 vs. TrEMBL
Match: F6HQF8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0063g01460 PE=3 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 3.8e-38
Identity = 96/126 (76.19%), Postives = 108/126 (85.71%), Query Frame = 1

Query: 3    ATASATLSPAISTAAPIAAGSR--RQRNTNVHYITGLNSFGGLKAHNNIFSLGLPVCADQ 62
            ATASATLSP+  +AA IA   R  ++R TNVH+I GLNSF GLKA+N++ SLGLPVC +Q
Sbjct: 1047 ATASATLSPSTFSAAAIAGLGRTSQRRKTNVHFIGGLNSFDGLKAYNSVASLGLPVCTEQ 1106

Query: 63   SFANIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEA 122
            SFA IV SLK PS+GKG+ GGGALSSTCNA GEIFRIAAI+NGLVLVGVAVGFVLLRIEA
Sbjct: 1107 SFAKIVGSLKSPSQGKGR-GGGALSSTCNAVGEIFRIAAIMNGLVLVGVAVGFVLLRIEA 1166

Query: 123  SVEEAE 127
            SVEEAE
Sbjct: 1167 SVEEAE 1171

BLAST of CmaCh19G006320 vs. TrEMBL
Match: A0A0D2RLR3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G264100 PE=3 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 8.6e-38
Identity = 93/125 (74.40%), Postives = 105/125 (84.00%), Query Frame = 1

Query: 3   ATASATLSPAISTAAPIAAGSRRQRNTNVHYITGLNSFGGLKAHNNIFSLGLPVCADQSF 62
           ATAS T +P +  AA      +++ NTNV+YITGLNSFGGLKAHN + SLG  VC +QSF
Sbjct: 2   ATASVTYTPPMLAAA--TTNPKKKTNTNVNYITGLNSFGGLKAHNKVVSLGQRVCTEQSF 61

Query: 63  ANIVSSLKYPSKGK-GKNGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEAS 122
           AN+VSSLK P+KGK GK+GGGALSSTCNA GEIFRIAAI+NGLVLVGVAVGFVLLRIEAS
Sbjct: 62  ANVVSSLKAPTKGKTGKSGGGALSSTCNAVGEIFRIAAIMNGLVLVGVAVGFVLLRIEAS 121

Query: 123 VEEAE 127
           VEEAE
Sbjct: 122 VEEAE 124

BLAST of CmaCh19G006320 vs. TrEMBL
Match: A0A061DXT9_THECC (Cytochrome P450 82C4, putative isoform 2 OS=Theobroma cacao GN=TCM_046710 PE=3 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 3.3e-37
Identity = 92/124 (74.19%), Postives = 104/124 (83.87%), Query Frame = 1

Query: 3   ATASATLSPAISTAAPIAAGSRRQRNTNVHYITGLNSFGGLKAHNNIFSLGLPVCADQSF 62
           ATASATLSP    AA + +  RR  + NV YI+GLN+FGGLKAHNN+ SLGLPVC +QSF
Sbjct: 2   ATASATLSPVTLAAATVISPGRRT-SVNVKYISGLNAFGGLKAHNNVVSLGLPVCTEQSF 61

Query: 63  ANIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEASV 122
           A +VSSL+ PSKGK   GGGALSSTCNA GEIFRIAAI+NGLVLVGVAVGFVLLRIEAS+
Sbjct: 62  AKVVSSLRAPSKGK---GGGALSSTCNAVGEIFRIAAIMNGLVLVGVAVGFVLLRIEASL 121

Query: 123 EEAE 127
           EEA+
Sbjct: 122 EEAD 121

BLAST of CmaCh19G006320 vs. TAIR10
Match: AT2G26500.2 (AT2G26500.2 cytochrome b6f complex subunit (petM), putative)

HSP 1 Score: 117.9 bits (294), Expect = 4.7e-27
Identity = 73/126 (57.94%), Postives = 89/126 (70.63%), Query Frame = 1

Query: 3   ATASATLSPAISTAAPIAAGSRRQRNTNVHYITGLNSFGGLKAHNN-IFSLGLPVCADQS 62
           A A A +S   S     +  ++++    V YITGLNS+GGLKA NN + S+G P+C +Q 
Sbjct: 4   AAAPAVISWTRSGIVSKSGQTQKKSEMKVSYITGLNSYGGLKAQNNKVVSMGSPLCTEQC 63

Query: 63  FANIVSSLKYPSKGKGKNG-GGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEA 122
           FAN+V SLK      G+ G GGALS+TCNA GEIF+IAAI+N L LVGVAVGFVLLRIE 
Sbjct: 64  FANVVMSLK------GRRGNGGALSTTCNAVGEIFKIAAIMNALTLVGVAVGFVLLRIET 123

Query: 123 SVEEAE 127
           SVEEAE
Sbjct: 124 SVEEAE 123

BLAST of CmaCh19G006320 vs. NCBI nr
Match: gi|659109813|ref|XP_008454894.1| (PREDICTED: uncharacterized protein LOC103495201 [Cucumis melo])

HSP 1 Score: 218.0 bits (554), Expect = 9.4e-54
Identity = 117/124 (94.35%), Postives = 120/124 (96.77%), Query Frame = 1

Query: 3   ATASATLSPAISTAAPIAAGSRRQRNTNVHYITGLNSFGGLKAHNNIFSLGLPVCADQSF 62
           ATASATLS A+STAAPIAAGSRRQR TNVHYITGLNSFGGLKAHNN+ SLGLPVCADQSF
Sbjct: 2   ATASATLSTAMSTAAPIAAGSRRQRQTNVHYITGLNSFGGLKAHNNVVSLGLPVCADQSF 61

Query: 63  ANIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEASV 122
           A IVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVL+GVAVGFVLLRIEASV
Sbjct: 62  AKIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLIGVAVGFVLLRIEASV 121

Query: 123 EEAE 127
           EEAE
Sbjct: 122 EEAE 125

BLAST of CmaCh19G006320 vs. NCBI nr
Match: gi|449438446|ref|XP_004136999.1| (PREDICTED: uncharacterized protein LOC101210164 [Cucumis sativus])

HSP 1 Score: 208.4 bits (529), Expect = 7.4e-51
Identity = 111/124 (89.52%), Postives = 118/124 (95.16%), Query Frame = 1

Query: 3   ATASATLSPAISTAAPIAAGSRRQRNTNVHYITGLNSFGGLKAHNNIFSLGLPVCADQSF 62
           ATASATLS A+S+AAPI+AGSRRQR TN H+I+GLNSF GLKAHNN+ SLGLPVCADQSF
Sbjct: 46  ATASATLSTAMSSAAPISAGSRRQRQTNAHFISGLNSFSGLKAHNNVVSLGLPVCADQSF 105

Query: 63  ANIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEASV 122
           A IVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVL+GVAVGFVLLRIEASV
Sbjct: 106 AKIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLIGVAVGFVLLRIEASV 165

Query: 123 EEAE 127
           EEAE
Sbjct: 166 EEAE 169

BLAST of CmaCh19G006320 vs. NCBI nr
Match: gi|700188736|gb|KGN43969.1| (hypothetical protein Csa_7G075020 [Cucumis sativus])

HSP 1 Score: 208.4 bits (529), Expect = 7.4e-51
Identity = 111/124 (89.52%), Postives = 118/124 (95.16%), Query Frame = 1

Query: 3   ATASATLSPAISTAAPIAAGSRRQRNTNVHYITGLNSFGGLKAHNNIFSLGLPVCADQSF 62
           ATASATLS A+S+AAPI+AGSRRQR TN H+I+GLNSF GLKAHNN+ SLGLPVCADQSF
Sbjct: 78  ATASATLSTAMSSAAPISAGSRRQRQTNAHFISGLNSFSGLKAHNNVVSLGLPVCADQSF 137

Query: 63  ANIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEASV 122
           A IVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVL+GVAVGFVLLRIEASV
Sbjct: 138 AKIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLIGVAVGFVLLRIEASV 197

Query: 123 EEAE 127
           EEAE
Sbjct: 198 EEAE 201

BLAST of CmaCh19G006320 vs. NCBI nr
Match: gi|823136100|ref|XP_012467803.1| (PREDICTED: uncharacterized protein LOC105786079 [Gossypium raimondii])

HSP 1 Score: 170.2 bits (430), Expect = 2.2e-39
Identity = 98/127 (77.17%), Postives = 109/127 (85.83%), Query Frame = 1

Query: 1   MAATASATLSPAISTAAPIAAGS-RRQRNTNVHYITGLNSFGGLKAHNNIFSLGLPVCAD 60
           MA TASATLSP   T AP + G+ RR+   NV+YITGLNSFGGLKAHNN+ SLG PVC +
Sbjct: 1   MATTASATLSP--PTLAPASVGNPRRRTKVNVNYITGLNSFGGLKAHNNVVSLGQPVCIE 60

Query: 61  QSFANIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIE 120
           QSFA +VSSL+ PSKGKG +GGGALSSTCNA GEIFRIAAI+NGLVLVGVAVGFVLLRIE
Sbjct: 61  QSFAKVVSSLRAPSKGKG-SGGGALSSTCNAVGEIFRIAAIMNGLVLVGVAVGFVLLRIE 120

Query: 121 ASVEEAE 127
           AS+EEAE
Sbjct: 121 ASLEEAE 124

BLAST of CmaCh19G006320 vs. NCBI nr
Match: gi|731383751|ref|XP_010647885.1| (PREDICTED: uncharacterized protein LOC104877276 [Vitis vinifera])

HSP 1 Score: 165.6 bits (418), Expect = 5.5e-38
Identity = 96/126 (76.19%), Postives = 108/126 (85.71%), Query Frame = 1

Query: 3   ATASATLSPAISTAAPIAAGSR--RQRNTNVHYITGLNSFGGLKAHNNIFSLGLPVCADQ 62
           ATASATLSP+  +AA IA   R  ++R TNVH+I GLNSF GLKA+N++ SLGLPVC +Q
Sbjct: 2   ATASATLSPSTFSAAAIAGLGRTSQRRKTNVHFIGGLNSFDGLKAYNSVASLGLPVCTEQ 61

Query: 63  SFANIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEA 122
           SFA IV SLK PS+GKG+ GGGALSSTCNA GEIFRIAAI+NGLVLVGVAVGFVLLRIEA
Sbjct: 62  SFAKIVGSLKSPSQGKGR-GGGALSSTCNAVGEIFRIAAIMNGLVLVGVAVGFVLLRIEA 121

Query: 123 SVEEAE 127
           SVEEAE
Sbjct: 122 SVEEAE 126

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PETM_SPIOL7.8e-0883.33Cytochrome b6-f complex subunit 7 (Fragment) OS=Spinacia oleracea GN=petM PE=1 S... [more]
Match NameE-valueIdentityDescription
A0A0A0K4W4_CUCSA5.2e-5189.52Uncharacterized protein OS=Cucumis sativus GN=Csa_7G075020 PE=3 SV=1[more]
A0A0D2NR38_GOSRA1.6e-3977.17Uncharacterized protein OS=Gossypium raimondii GN=B456_002G214600 PE=3 SV=1[more]
F6HQF8_VITVI3.8e-3876.19Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0063g01460 PE=3 SV=... [more]
A0A0D2RLR3_GOSRA8.6e-3874.40Uncharacterized protein OS=Gossypium raimondii GN=B456_005G264100 PE=3 SV=1[more]
A0A061DXT9_THECC3.3e-3774.19Cytochrome P450 82C4, putative isoform 2 OS=Theobroma cacao GN=TCM_046710 PE=3 S... [more]
Match NameE-valueIdentityDescription
AT2G26500.24.7e-2757.94 cytochrome b6f complex subunit (petM), putative[more]
Match NameE-valueIdentityDescription
gi|659109813|ref|XP_008454894.1|9.4e-5494.35PREDICTED: uncharacterized protein LOC103495201 [Cucumis melo][more]
gi|449438446|ref|XP_004136999.1|7.4e-5189.52PREDICTED: uncharacterized protein LOC101210164 [Cucumis sativus][more]
gi|700188736|gb|KGN43969.1|7.4e-5189.52hypothetical protein Csa_7G075020 [Cucumis sativus][more]
gi|823136100|ref|XP_012467803.1|2.2e-3977.17PREDICTED: uncharacterized protein LOC105786079 [Gossypium raimondii][more]
gi|731383751|ref|XP_010647885.1|5.5e-3876.19PREDICTED: uncharacterized protein LOC104877276 [Vitis vinifera][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012595PetM_cyt_b6/f_cplx_su7
Vocabulary: Cellular Component
TermDefinition
GO:0009512cytochrome b6f complex
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0009512 cytochrome b6f complex
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh19G006320.1CmaCh19G006320.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012595PetM of cytochrome b6/f complex subunit 7HAMAPMF_00396Cytb6_f_PetMcoord: 90..122
score: 12
IPR012595PetM of cytochrome b6/f complex subunit 7PFAMPF08041PetMcoord: 92..119
score: 2.0
NoneNo IPR availablePANTHERPTHR34951FAMILY NOT NAMEDcoord: 3..126
score: 6.7
NoneNo IPR availablePANTHERPTHR34951:SF1SUBFAMILY NOT NAMEDcoord: 3..126
score: 6.7
NoneNo IPR availableunknownSSF103441PetM subunit of the cytochrome b6f complexcoord: 91..123
score: 2.88

The following gene(s) are paralogous to this gene:

None