CmoCh19G006480 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh19G006480
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Cytochrome b6-f complex subunit 7
Location	Cmo_Chr19 : 6999892 .. 7002375 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCTACACCCTCCGCTACCCTCTCGCCGCCCATATCCACCGCCGCCCCCATCGCCGCCGGCTCTAGGCGGCAGAGGAACACCAATGTCCATTACATCACTGGCCTCAACTCCTTTAGTGGCTTGAAAGCTCACAACAATATCACCTCCTTGGGCCTTCCCGTTTGTGCCGATCAGTCATTTGCTAGCATTGTGAGTTCTTTGAAATACCCATCAAAGGGAAAAGGCAAAAACGGTGGTGGGGCTCTCTCTTCTACCTGTAATGCCGCCGGTGAGATTTTCAGGATCGCCGCCATTATCAATGGGCTTGTTCTTGTTGGAGTGGCGGTGGGGTTTGTTCTTCTCAGGATTGAGGCATCTGTGGAGGAGGCTGAGTGAGTGAGAAGGTGCTATAATGTTAATGGTGATATTGTTGAATCATCGGAATCTGTAAGTTAATCTGTTACTTTTACTACTTATAACTCAATTGTTTCTATCAGTCAAAACTATTGACAACATTCATTTGGCCTCTTACACTTTCTCCCTTGCTTTCTGCTTTCAAAAGAATGGCAATGTAGTATGTTGTTCATCTGCTTTGATTGTTCTGCAACACGAAAATGCATATTCTTCTAAATTCTTGTAAGATCAACTAGTTTTAGGGCATGGTAGATTAGATTGCATGTTTAAAACCATTCAAGCTCGATATGATTGACCTTGTGGAGTGATTCGAGTCTCAAACAAGTGTTCTTCCCTTAAGATATTTGATCAACAAGGTGATCTGGATTTTACTTTCCCTTGGAGTGATTTTTTATCATCAGGGTTGAGTGTTCTTACCTTTTGTTAGCTAAAGACTAAGTTTCTTTGCGATTCTATGTAATTTAGGTTGCATGTTTAGAATCATTCAAGCTTGACATGATCGAACTTGCTTGTGGAGGGATCCGAGTCTCAACCAAATGTTCTTGTCTTGAGATATTTGATCAATAAAGTGATCTGGATTTTACTTTCGGAGTGATTTCTTATCATCAGGGCTGAGTGTTCTTACCTGTCATTAGCTAAAGACTAAGTTTCTTTGCAATTCTACGTAGTATTTAGAATCATTCAAACTTGACATGATCGAGCTTGCTTGTCGAAGGATTGGAGTCTCAACCAAATATTCTTGTCTTGAGATATTTGATCGATAAGGTGATCTAAATTTTGCTTTCCCTTCGAGTGATTTCTTATCATTAGGGTTAAATGTTCTTACCTTTCCTTAGCAAAGGTCTAAGTTTCTTTGCAATTCTATATAGTTTAGATTGCATGTCTAGAATCATTCAAGCTTGAGTTGATCGAGCTTGCTTGTGGAGTGATTGAGTCTCAACCAAATATTCTTGCCTTGAAATATTCGATCAACAAGGTAATCCGAATCTTAATTTCCTTATAGTGATTCCTTATCATGTTACGTGGGAGGTAGTAGTTAAGCTAGTCGAGTTGGGTGGCCTAGCCATAGGGAGCTTCAATTTACGTAATGAAGCTCTTCTAGCAAAATGGTTGCGACCCACGATCCCTCTAGAGGGTTTTCTTCACGTTCTTTCTTTTGTATGTTCTTTGTCCGTCTCCCACCCCAAATCACCTCTTCTTTCATCTAGGAGGTTAAAATCCATTTACATGGGAGAGTCAACACTATGAACCGTGTTCAAATACGTTCTTCGTGTTGTGTCGTATCAGCAGCGGTGTGTTCTTTGTAGGAATCATGCAGAGAATCAGTAAAAAAAAGTTCTTTCATACCATAAATGCTAGAATATCGAACAGTAAAAGAGATGAAAAGTAGGGCCTTAAAGGGAAGGATTTTTTCTTCGGAATCGGGTTTCGATAACGCTCGCATCTGCAGGATTGGATCAGTTCTTCATGTGTGATTCTTACTGAATCGGGTTCATCCCGGAAATCAGCTTCAGTAGCAAGTTTCAGTCTGCAAAACATACAATAAAGTTCTAGATGTATTTATTCTGATTCTTGGTTTTAACATCGGCGATATCACAGCCTTTTTAGTCTTTATAGGATATTGTCTCGACCGTTTTGACCAATTGATTCACCTCATTCATGACCATTCTCGACATCTTTCACGCTTCTCAAAGCTGCTCGTAGTCCGATAGCTGGATCTTTGGGGTGCAAGTATCAGATTTTGTACATTTGAGGCTTATAAATCCAGTAAATATGAGAATCCCTGCTAGTATCCAACTGAATTGCAGGTTAGCGAGCGCTCGTGCCCTCATATCAGCTTCCTTGGAGGCACAAATCACTGCTCCGAGCATTTCGTCTTTACCGTTCTCCACGATCCTCATGCTGCAGCCCTTAGGAACCAAGTTTGGAACCCATAGCATGAACCCCATGTTCATGAACCAACACCCTTGCAAAACAACCAATAACGAAAGAACAATGGCTGCTGGAAAGCAGGTAGGACAACAAGCAGCTACTATTACCGACACGAGCGATGCAAACACAATGAGCTGCAAGAGCCAATGGTAA

mRNA sequence

ATGGCGGCTACACCCTCCGCTACCCTCTCGCCGCCCATATCCACCGCCGCCCCCATCGCCGCCGGCTCTAGGCGGCAGAGGAACACCAATGTCCATTACATCACTGGCCTCAACTCCTTTAGTGGCTTGAAAGCTCACAACAATATCACCTCCTTGGGCCTTCCCGTTTGTGCCGATCAGTCATTTGCTAGCATTGTGAGTTCTTTGAAATACCCATCAAAGGGAAAAGGCAAAAACGGTGGTGGGGCTCTCTCTTCTACCTGTAATGCCGCCGGTGAGATTTTCAGGATCGCCGCCATTATCAATGGGCTTGTTCTTGTTGGAGTGGCGGTGGGGTTTGTTCTTCTCAGGATTGAGGCATCTGTGGAGGAGGCTGAGTTAGCGAGCGCTCGTGCCCTCATATCAGCTTCCTTGGAGGCACAAATCACTGCTCCGAGCATTTCGTCTTTACCGTTCTCCACGATCCTCATGCTGCAGCCCTTAGGAACCAAGTTTGGAACCCATAGCATGAACCCCATGTTCATGAACCAACACCCTTGCAAAACAACCAATAACGAAAGAACAATGGCTGCTGGAAAGCAGGTAGGACAACAAGCAGCTACTATTACCGACACGAGCGATGCAAACACAATGAGCTGCAAGAGCCAATGGTAA

Coding sequence (CDS)

ATGGCGGCTACACCCTCCGCTACCCTCTCGCCGCCCATATCCACCGCCGCCCCCATCGCCGCCGGCTCTAGGCGGCAGAGGAACACCAATGTCCATTACATCACTGGCCTCAACTCCTTTAGTGGCTTGAAAGCTCACAACAATATCACCTCCTTGGGCCTTCCCGTTTGTGCCGATCAGTCATTTGCTAGCATTGTGAGTTCTTTGAAATACCCATCAAAGGGAAAAGGCAAAAACGGTGGTGGGGCTCTCTCTTCTACCTGTAATGCCGCCGGTGAGATTTTCAGGATCGCCGCCATTATCAATGGGCTTGTTCTTGTTGGAGTGGCGGTGGGGTTTGTTCTTCTCAGGATTGAGGCATCTGTGGAGGAGGCTGAGTTAGCGAGCGCTCGTGCCCTCATATCAGCTTCCTTGGAGGCACAAATCACTGCTCCGAGCATTTCGTCTTTACCGTTCTCCACGATCCTCATGCTGCAGCCCTTAGGAACCAAGTTTGGAACCCATAGCATGAACCCCATGTTCATGAACCAACACCCTTGCAAAACAACCAATAACGAAAGAACAATGGCTGCTGGAAAGCAGGTAGGACAACAAGCAGCTACTATTACCGACACGAGCGATGCAAACACAATGAGCTGCAAGAGCCAATGGTAA

Homology

[Close]

BLAST of CmoCh19G006480 vs. Swiss-Prot
Match: PETM_SPIOL (Cytochrome b6-f complex subunit 7 (Fragment) OS=Spinacia oleracea GN=petM PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.3e-07
Identity = 30/36 (83.33%), Postives = 34/36 (94.44%), Query Frame = 1


Query: 89  NAAGEIFRIAAIINGLVLVGVAVGFVLLRIEASVEE 125
           NAA EIFRIAA++NGL LVGVA+GFVLLRIEA+VEE
Sbjct: 1   NAAAEIFRIAAVMNGLTLVGVAIGFVLLRIEATVEE 36

[Close]

BLAST of CmoCh19G006480 vs. TrEMBL
Match: A0A0A0K4W4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G075020 PE=3 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 4.4e-50
Identity = 110/124 (88.71%), Postives = 117/124 (94.35%), Query Frame = 1


Query: 3   ATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQSF 62
           AT SATLS  +S+AAPI+AGSRRQR TN H+I+GLNSFSGLKAHNN+ SLGLPVCADQSF
Sbjct: 78  ATASATLSTAMSSAAPISAGSRRQRQTNAHFISGLNSFSGLKAHNNVVSLGLPVCADQSF 137

Query: 63  ASIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEASV 122
           A IVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVL+GVAVGFVLLRIEASV
Sbjct: 138 AKIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLIGVAVGFVLLRIEASV 197

Query: 123 EEAE 127
           EEAE
Sbjct: 198 EEAE 201

[Close]

BLAST of CmoCh19G006480 vs. TrEMBL
Match: A0A0D2NR38_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G214600 PE=3 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 6.0e-39
Identity = 97/127 (76.38%), Postives = 108/127 (85.04%), Query Frame = 1


Query: 1   MAATPSATLSPPISTAAPIAAGS-RRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCAD 60
           MA T SATLSPP  T AP + G+ RR+   NV+YITGLNSF GLKAHNN+ SLG PVC +
Sbjct: 1   MATTASATLSPP--TLAPASVGNPRRRTKVNVNYITGLNSFGGLKAHNNVVSLGQPVCIE 60

Query: 61  QSFASIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIE 120
           QSFA +VSSL+ PSKGKG +GGGALSSTCNA GEIFRIAAI+NGLVLVGVAVGFVLLRIE
Sbjct: 61  QSFAKVVSSLRAPSKGKG-SGGGALSSTCNAVGEIFRIAAIMNGLVLVGVAVGFVLLRIE 120

Query: 121 ASVEEAE 127
           AS+EEAE
Sbjct: 121 ASLEEAE 124

[Close]

BLAST of CmoCh19G006480 vs. TrEMBL
Match: F6HQF8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0063g01460 PE=3 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 2.5e-37
Identity = 95/126 (75.40%), Postives = 106/126 (84.13%), Query Frame = 1


Query: 3    ATPSATLSPPISTAAPIAAGSR--RQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQ 62
            AT SATLSP   +AA IA   R  ++R TNVH+I GLNSF GLKA+N++ SLGLPVC +Q
Sbjct: 1047 ATASATLSPSTFSAAAIAGLGRTSQRRKTNVHFIGGLNSFDGLKAYNSVASLGLPVCTEQ 1106

Query: 63   SFASIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEA 122
            SFA IV SLK PS+GKG+ GGGALSSTCNA GEIFRIAAI+NGLVLVGVAVGFVLLRIEA
Sbjct: 1107 SFAKIVGSLKSPSQGKGR-GGGALSSTCNAVGEIFRIAAIMNGLVLVGVAVGFVLLRIEA 1166

Query: 123  SVEEAE 127
            SVEEAE
Sbjct: 1167 SVEEAE 1171

[Close]

BLAST of CmoCh19G006480 vs. TrEMBL
Match: A0A0D2RLR3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G264100 PE=3 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.2e-36
Identity = 91/125 (72.80%), Postives = 104/125 (83.20%), Query Frame = 1


Query: 3   ATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQSF 62
           AT S T +PP+  AA      +++ NTNV+YITGLNSF GLKAHN + SLG  VC +QSF
Sbjct: 2   ATASVTYTPPMLAAA--TTNPKKKTNTNVNYITGLNSFGGLKAHNKVVSLGQRVCTEQSF 61

Query: 63  ASIVSSLKYPSKGK-GKNGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEAS 122
           A++VSSLK P+KGK GK+GGGALSSTCNA GEIFRIAAI+NGLVLVGVAVGFVLLRIEAS
Sbjct: 62  ANVVSSLKAPTKGKTGKSGGGALSSTCNAVGEIFRIAAIMNGLVLVGVAVGFVLLRIEAS 121

Query: 123 VEEAE 127
           VEEAE
Sbjct: 122 VEEAE 124

[Close]

BLAST of CmoCh19G006480 vs. TrEMBL
Match: A5AN62_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027615 PE=3 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 2.8e-36
Identity = 94/126 (74.60%), Postives = 105/126 (83.33%), Query Frame = 1


Query: 3   ATPSATLSPPISTAAPIAAGSR--RQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQ 62
           AT SATLSP   +AA IA   R  ++R TNVH+I GLNSF GLKA+N++ SLGLPVC +Q
Sbjct: 2   ATASATLSPSTFSAAAIAGLGRTSQRRKTNVHFIGGLNSFDGLKAYNSVASLGLPVCTEQ 61

Query: 63  SFASIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEA 122
           SFA IV SLK  S+GKG+ GGGALSSTCNA GEIFRIAAI+NGLVLVGVAVGFVLLRIEA
Sbjct: 62  SFAKIVXSLKSXSQGKGR-GGGALSSTCNAVGEIFRIAAIMNGLVLVGVAVGFVLLRIEA 121

Query: 123 SVEEAE 127
           SVEEAE
Sbjct: 122 SVEEAE 126

[Close]

BLAST of CmoCh19G006480 vs. TAIR10
Match: AT2G26500.2 (AT2G26500.2 cytochrome b6f complex subunit (petM), putative)

HSP 1 Score: 111.7 bits (278), Expect = 5.7e-25
Identity = 72/127 (56.69%), Postives = 89/127 (70.08%), Query Frame = 1


Query: 2   AATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNN-ITSLGLPVCADQ 61
           AA P A +S   S     +  ++++    V YITGLNS+ GLKA NN + S+G P+C +Q
Sbjct: 4   AAAP-AVISWTRSGIVSKSGQTQKKSEMKVSYITGLNSYGGLKAQNNKVVSMGSPLCTEQ 63

Query: 62  SFASIVSSLKYPSKGKGKNG-GGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIE 121
            FA++V SLK      G+ G GGALS+TCNA GEIF+IAAI+N L LVGVAVGFVLLRIE
Sbjct: 64  CFANVVMSLK------GRRGNGGALSTTCNAVGEIFKIAAIMNALTLVGVAVGFVLLRIE 123

Query: 122 ASVEEAE 127
            SVEEAE
Sbjct: 124 TSVEEAE 123

[Close]

BLAST of CmoCh19G006480 vs. NCBI nr
Match: gi|659109813|ref|XP_008454894.1| (PREDICTED: uncharacterized protein LOC103495201 [Cucumis melo])

HSP 1 Score: 211.8 bits (538), Expect = 1.2e-51
Identity = 114/124 (91.94%), Postives = 117/124 (94.35%), Query Frame = 1


Query: 3   ATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQSF 62
           AT SATLS  +STAAPIAAGSRRQR TNVHYITGLNSF GLKAHNN+ SLGLPVCADQSF
Sbjct: 2   ATASATLSTAMSTAAPIAAGSRRQRQTNVHYITGLNSFGGLKAHNNVVSLGLPVCADQSF 61

Query: 63  ASIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEASV 122
           A IVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVL+GVAVGFVLLRIEASV
Sbjct: 62  AKIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLIGVAVGFVLLRIEASV 121

Query: 123 EEAE 127
           EEAE
Sbjct: 122 EEAE 125

[Close]

BLAST of CmoCh19G006480 vs. NCBI nr
Match: gi|449438446|ref|XP_004136999.1| (PREDICTED: uncharacterized protein LOC101210164 [Cucumis sativus])

HSP 1 Score: 206.1 bits (523), Expect = 6.3e-50
Identity = 110/124 (88.71%), Postives = 117/124 (94.35%), Query Frame = 1


Query: 3   ATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQSF 62
           AT SATLS  +S+AAPI+AGSRRQR TN H+I+GLNSFSGLKAHNN+ SLGLPVCADQSF
Sbjct: 46  ATASATLSTAMSSAAPISAGSRRQRQTNAHFISGLNSFSGLKAHNNVVSLGLPVCADQSF 105

Query: 63  ASIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEASV 122
           A IVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVL+GVAVGFVLLRIEASV
Sbjct: 106 AKIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLIGVAVGFVLLRIEASV 165

Query: 123 EEAE 127
           EEAE
Sbjct: 166 EEAE 169

[Close]

BLAST of CmoCh19G006480 vs. NCBI nr
Match: gi|700188736|gb|KGN43969.1| (hypothetical protein Csa_7G075020 [Cucumis sativus])

HSP 1 Score: 206.1 bits (523), Expect = 6.3e-50
Identity = 110/124 (88.71%), Postives = 117/124 (94.35%), Query Frame = 1


Query: 3   ATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQSF 62
           AT SATLS  +S+AAPI+AGSRRQR TN H+I+GLNSFSGLKAHNN+ SLGLPVCADQSF
Sbjct: 78  ATASATLSTAMSSAAPISAGSRRQRQTNAHFISGLNSFSGLKAHNNVVSLGLPVCADQSF 137

Query: 63  ASIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEASV 122
           A IVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVL+GVAVGFVLLRIEASV
Sbjct: 138 AKIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLIGVAVGFVLLRIEASV 197

Query: 123 EEAE 127
           EEAE
Sbjct: 198 EEAE 201

[Close]

BLAST of CmoCh19G006480 vs. NCBI nr
Match: gi|823136100|ref|XP_012467803.1| (PREDICTED: uncharacterized protein LOC105786079 [Gossypium raimondii])

HSP 1 Score: 169.1 bits (427), Expect = 8.6e-39
Identity = 97/127 (76.38%), Postives = 108/127 (85.04%), Query Frame = 1


Query: 1   MAATPSATLSPPISTAAPIAAGS-RRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCAD 60
           MA T SATLSPP  T AP + G+ RR+   NV+YITGLNSF GLKAHNN+ SLG PVC +
Sbjct: 1   MATTASATLSPP--TLAPASVGNPRRRTKVNVNYITGLNSFGGLKAHNNVVSLGQPVCIE 60

Query: 61  QSFASIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIE 120
           QSFA +VSSL+ PSKGKG +GGGALSSTCNA GEIFRIAAI+NGLVLVGVAVGFVLLRIE
Sbjct: 61  QSFAKVVSSLRAPSKGKG-SGGGALSSTCNAVGEIFRIAAIMNGLVLVGVAVGFVLLRIE 120

Query: 121 ASVEEAE 127
           AS+EEAE
Sbjct: 121 ASLEEAE 124

[Close]

BLAST of CmoCh19G006480 vs. NCBI nr
Match: gi|731383751|ref|XP_010647885.1| (PREDICTED: uncharacterized protein LOC104877276 [Vitis vinifera])

HSP 1 Score: 163.7 bits (413), Expect = 3.6e-37
Identity = 95/126 (75.40%), Postives = 106/126 (84.13%), Query Frame = 1


Query: 3   ATPSATLSPPISTAAPIAAGSR--RQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQ 62
           AT SATLSP   +AA IA   R  ++R TNVH+I GLNSF GLKA+N++ SLGLPVC +Q
Sbjct: 2   ATASATLSPSTFSAAAIAGLGRTSQRRKTNVHFIGGLNSFDGLKAYNSVASLGLPVCTEQ 61

Query: 63  SFASIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEA 122
           SFA IV SLK PS+GKG+ GGGALSSTCNA GEIFRIAAI+NGLVLVGVAVGFVLLRIEA
Sbjct: 62  SFAKIVGSLKSPSQGKGR-GGGALSSTCNAVGEIFRIAAIMNGLVLVGVAVGFVLLRIEA 121

Query: 123 SVEEAE 127
           SVEEAE
Sbjct: 122 SVEEAE 126

The following BLAST results are available for this feature:

BLAST of CmoCh19G006480 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PETM_SPIOL	2.3e-07	83.33	Cytochrome b6-f complex subunit 7 (Fragment) OS=Spinacia oleracea GN=petM PE=1 S...	[more]

BLAST of CmoCh19G006480 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K4W4_CUCSA	4.4e-50	88.71	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G075020 PE=3 SV=1	[more]
A0A0D2NR38_GOSRA	6.0e-39	76.38	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G214600 PE=3 SV=1	[more]
F6HQF8_VITVI	2.5e-37	75.40	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0063g01460 PE=3 SV=...	[more]
A0A0D2RLR3_GOSRA	1.2e-36	72.80	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G264100 PE=3 SV=1	[more]
A5AN62_VITVI	2.8e-36	74.60	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027615 PE=3 SV=1	[more]

BLAST of CmoCh19G006480 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G26500.2	5.7e-25	56.69	cytochrome b6f complex subunit (petM), putative	[more]

BLAST of CmoCh19G006480 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659109813\|ref\|XP_008454894.1\|	1.2e-51	91.94	PREDICTED: uncharacterized protein LOC103495201 [Cucumis melo]	[more]
gi\|449438446\|ref\|XP_004136999.1\|	6.3e-50	88.71	PREDICTED: uncharacterized protein LOC101210164 [Cucumis sativus]	[more]
gi\|700188736\|gb\|KGN43969.1\|	6.3e-50	88.71	hypothetical protein Csa_7G075020 [Cucumis sativus]	[more]
gi\|823136100\|ref\|XP_012467803.1\|	8.6e-39	76.38	PREDICTED: uncharacterized protein LOC105786079 [Gossypium raimondii]	[more]
gi\|731383751\|ref\|XP_010647885.1\|	3.6e-37	75.40	PREDICTED: uncharacterized protein LOC104877276 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR012595	PetM_cyt_b6/f_cplx_su7

Vocabulary: **Cellular Component**
Term	Definition
GO:0009512	cytochrome b6f complex

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009512	cytochrome b6f complex
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh19G006480.1	CmoCh19G006480.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012595	PetM of cytochrome b6/f complex subunit 7	HAMAP	MF_00396	Cytb6_f_PetM	coord: 90..122 score: 12
IPR012595	PetM of cytochrome b6/f complex subunit 7	PFAM	PF08041	PetM	coord: 92..119 score: 4.6
None	No IPR available	PANTHER	PTHR34951	FAMILY NOT NAMED	coord: 3..127 score: 9.2
None	No IPR available	PANTHER	PTHR34951:SF1	SUBFAMILY NOT NAMED	coord: 3..127 score: 9.2
None	No IPR available	unknown	SSF103441	PetM subunit of the cytochrome b6f complex	coord: 91..123 score: 7.85

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh19G006480	Cucsa.220200	Cucumber (Gy14) v1	cgycmoB0627
CmoCh19G006480	CmaCh19G006320	Cucurbita maxima (Rimu)	cmacmoB508
CmoCh19G006480	Cla015978	Watermelon (97103) v1	cmowmB496
CmoCh19G006480	Csa7G075020	Cucumber (Chinese Long) v2	cmocuB519
CmoCh19G006480	MELO3C018419	Melon (DHL92) v3.5.1	cmomeB454
CmoCh19G006480	ClCG02G005540	Watermelon (Charleston Gray)	cmowcgB459
CmoCh19G006480	CSPI07G07990	Wild cucumber (PI 183967)	cmocpiB525
CmoCh19G006480	Lsi11G010420	Bottle gourd (USVL1VR-Ls)	cmolsiB457
CmoCh19G006480	MELO3C018419.2	Melon (DHL92) v3.6.1	cmomedB523
CmoCh19G006480	CsaV3_7G010090	Cucumber (Chinese Long) v3	cmocucB0623
CmoCh19G006480	Cla97C02G032530	Watermelon (97103) v2	cmowmbB512
CmoCh19G006480	Bhi05G001029	Wax gourd	cmowgoB0641
CmoCh19G006480	CsGy7G007540	Cucumber (Gy14) v2	cgybcmoB928
CmoCh19G006480	Carg22042	Silver-seed gourd	carcmoB0293

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh19G006480	Cucurbita pepo (Zucchini)	cmocpeB481
CmoCh19G006480	Cucurbita pepo (Zucchini)	cmocpeB484
CmoCh19G006480	Cucurbita pepo (Zucchini)	cmocpeB490
CmoCh19G006480	Cucurbita pepo (Zucchini)	cmocpeB494
CmoCh19G006480	Cucurbita pepo (Zucchini)	cmocpeB499
CmoCh19G006480	Bottle gourd (USVL1VR-Ls)	cmolsiB454
CmoCh19G006480	Bottle gourd (USVL1VR-Ls)	cmolsiB482
CmoCh19G006480	Cucumber (Gy14) v2	cgybcmoB202
CmoCh19G006480	Melon (DHL92) v3.6.1	cmomedB526
CmoCh19G006480	Silver-seed gourd	carcmoB1089
CmoCh19G006480	Cucumber (Chinese Long) v3	cmocucB0590
CmoCh19G006480	Watermelon (97103) v2	cmowmbB527
CmoCh19G006480	Cucurbita moschata (Rifu)	cmocmoB110
CmoCh19G006480	Cucurbita moschata (Rifu)	cmocmoB352
CmoCh19G006480	Cucurbita moschata (Rifu)	cmocmoB382
CmoCh19G006480	Cucumber (Gy14) v1	cgycmoB0251
CmoCh19G006480	Cucurbita maxima (Rimu)	cmacmoB143
CmoCh19G006480	Cucurbita maxima (Rimu)	cmacmoB548
CmoCh19G006480	Cucurbita maxima (Rimu)	cmacmoB599
CmoCh19G006480	Cucurbita maxima (Rimu)	cmacmoB853
CmoCh19G006480	Wild cucumber (PI 183967)	cmocpiB500
CmoCh19G006480	Cucumber (Chinese Long) v2	cmocuB496