CsaV3_7G010090 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_7G010090
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Cytochrome b6-f complex subunit 7
Location	chr7 : 5701200 .. 5708301 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAGATTGTAAATACAACAAACACCATATTGATATCAATATCATCATTTTGATTTTGATTTTGATGGGGCTAGTATCCAAAGATATTGAGAAATCTTTAGCAATTCTAATCTGTTTATGAACCACCCAAATTCCTCTTACCTTATCCATTCTTTCTCCATACAAACACTCTTTTCCCCACCCCCACTCCCCCCATCCATTTCTCATCTCATCACTTTCAATTTTCTCTTCCACTCAGGTTCAATCCCTTCCCTTTTTCTCCCTCAAAATCCCCTTTTCCCATCTCAGTTTTCACTCAATATTGACTCTTCCTTCTCTCTTCCTCTTCTTTCAGGCACCATTCCAATGGCTACAGCCTCCGCTACCCTCTCGACGGCCATGTCCTCCGCCGCCCCCATCTCCGCCGGCTCAAGGCGGCAGAGGCAAACCAATGCCCATTTTATTTCTGGGCTTAACTCCTTTAGTGGCTTGAAAGCTCACAACAATGTCGTCTCCTTAGGCCTTCCCGTTTGTGCTGATCAATCATTTGCAAAAATTGTGAGCTCTTTGAAATACCCATCAAAGGGAAAGGGGAAAAACGGCGGTGGAGCTCTTTCTTCCACTTGTAATGCCGCCGGTGAGATTTTCAGGATTGCTGCCATTATCAATGGCCTGGTTCTTATTGGTGTGGCTGTGGGGTTTGTTCTTCTTCGGATCGAAGCATCTGTGGAGGAGGCAGAGTGAAAAGCTACCAAAAATGGTTGATGATGATGAGGATATTGGTCGGTTATCTGAAATTTGTAAGTTAATCTACTTTTACCAGTTATTGTAGAACTCAATTGTTTCCATCAGTCAAAACAATTGACAAAATTCATTTTCCCTATTTCTTTGCCCTGCTTTCTCATTACAAAATAATGGCATTGTAGTATATTGTTCATCTGCTTGAAAAAAGATGCATATTCTTGTAAATTCTTTTTGTGCTGCTTGGATCATGAGAAGAATAAGAAATGAACTTTCCAGGCAATTATTGTAAGATCAACTAGTTCTTTGAGGAGACTGCCAAAAACAAAATAAAAAACAATAAAAATATGGTTATCAAACGGAGGTTAAGTTATTGTGTTTTTGAATTCACTGTTAATATGTTTTGAAACAACAACTTTGTCTTAAGTAAACTGAAAGAAAAAGGGAACAAATTGTAAGAAAATGTATCCACATACAATCCATTTCACGCAGTTACTGTTTTGGTAGTAGAAAGTTGGATCGTAAACAATCTCATAAACCAAGCAACCAGCATCTCAAATTGGTGTAAAGAACTTGAATGTTAGTTAGTAGGTTTTTGAACGAAGATTGGTATGAAACTTAGACAGGAGACTGAAATCAAGAATTGTACTTTTGTGTATAGAGTTCAATTTCACTGGAGTAAGCTTTCATGTTTACTCTCAAATAAAGGTTGTCTTGTTGATTATACAAAGCCTAGCGTACATGAAATAGATTCCTGCAATATATGGCTTGAAATTGAACCTTGCTTGATGAACTTATTACTAAGAAGTAAGAGTTGAGGAACATTTTGAATCAACTTAGCTTGACTCAGAGGGAAAGAGATCAGGGGATTAGATAAAAAAAAGCTTCATTCAACAAAAAGAGAGTTCCTTGATCGTACTGTACAATGCTAGAATGTCAATTGTCAAACAATACAGGGGATGGAAAAGAAGGATCTTCTCTCCAGTCTCCATAAGCGATTCTAATTAAATTGGATGATCTCGATACCACACGCATTTCCAGGGTTGGATGCTGAATGTTTGTAAAAATGTTGCTGAATGTTTTAATGATTTGTATATCACATTTAAAGGAAACTAAAATTTTGTTTTGGTCTCAATATTGATTCGAGATGTACTGAGATGAACCATTAAAAAATTAACAAAAAGAGTGCAATTTGCGATACGTGGAAAGAGAGTGCAATGTTAGTTACTAGTCTGGATGATATGTACCTAAGTTCTTTATGTATTTATTATGATTGATGGTTTTAATAACACAATCACAGCCTTTTCTCTTCATATGACATTGTCTTGACCCTTTTGGCCAATTGATTCAACTCATTCACAACCTTGTTGCTGATAGCTATATCAATGCATATTGGTATCTTTTGGTCAACTCAAAGCTGCTCATAGTCCGTTAACTGGATCTTCGAGCTGCAATTTTCAGATTTAGTACATTTGATGCTTATAATTCCAGTAAATATAAGAATTCCTGCTAGTATCCAGCTGAATTGGAGGTTGGCGAGTGCCCGTGCCCTCATATCAGCTTCTTCAGAGGCACAAATGACTGCTCCAAGCATTTCATCTTTGCCGTTGTCCATCACCCTCATACTGCAGCCCTTGGGAACTAAGTTTGGAACCCATAGCATGAACCCCATGTTCATAAACCAACACCCTTGCAAAACAACCAATAATGAAAGAATAAGAGCTGCAGGGAAGTTGCTAGGACAACAAGCAGCTACGATTACTGACACAAGAGACGCGAACACTATCACTTGCAAGAGCCAATGGTAATGACCTTCGATGCCATTATGGTCAGCTGAGTGGAAATGGAGCAAGAATAACTCCTGACTGAAAACACAGGCTGCAAAGACGCCATCAATACCAGATAATACATTTGATGAGCGATTCAACTCGTTATAGAGGGTAAAACCTGAAAATATGGCAAGGTGTAGGAACATGCTAGCGTGCTCCAAGTTGATGACTTTGAAAGACAAATGAACAAAAGGGAAGTCCCAAAATTGTCTGAAAATTGCAATGATCGAAAAAGAGAACACGAAAATGAGCTCCAAGTACTTGAATTTGGAAAAAGGTTGGTCGAGAGGATACCAAAATCGTACTTTGAAATTTGAAGAGCCTTTGAGATTGTAGGTTTTGATCGTATTCACAGTATGCCAAAGGCCAAGAAGAGTGAATGCAAAACCGGATGCTACATGAGGTACTAATTGCCCCATTGAAACCTCTACTTTCAAACTCTAGCTTACCAAATTCATCCATAAGCCAATGCCATTTTATATCCTCTCTTTTGCTTTGTAGTTGCAACCTAAAAATGTTTATGGTTGTCTAGTCAATTTTTTTGTGCATAATGTATGTGTTTCCACTAGAAAAGTTGTCAAAAGTTGATAAAAGGAGCTTTACAAATTGGATTTCTGATGGGTCAGTTCAATACCTAGATGAAAAAGTTAGAAAATGAACTTAACAAGATTATAAACCAAAACAGTTGATCTAAACTTGGGGTTGAAATCTCAGTTCTTCCCATCTAGGGTGAATAAAATCAATAACCAATGGGGGATCAAAACTACCACAAACCAACAAAAAATTACCAATGACAGTCTAAAAAAATACCAAATTTGACCAGTAAAAAATCACTTAAATTTCATTTCTAGCTAGAAAATTTGGGTCAATTTGAGAAATGTAAATTATTTTTACGAAATAAAATAAATAAATAAAAAGCGATGTTCTAAGCTCAGTTTTATTTTGGGGTTGAAAGTGATCATTCAACAGAATTTTTATTTTGCATTTGTCCTGTGCCTTCTAAATCACAAGGATTTTGGGTTCAAAAGCATGAAACTTGGAGGGATAGGTTCAAGGTCATGGTCTAAAGAACTTATAGGGAATAGGTTCAAGTATAACAAAAACTACGACTACTACAAGTAATAATAAGGCACAATTACTCTATTAGTATACGAATAGCAAATGTCAAACACAAATTACATTATGGGTCCAAAATTATATTTGAAGTGTAATAAGCTTCTGTTATCAACTTTTGACAATTTAGACATGATGGTTATAATATGTGGACAGTTTGTGCTGCACTAAGTGTGAAGTGTATATGTGGTGAAAAACTATTAAAAGAATATTGAGTGAATTTAGTGGAAAAGATTTAAAATGTTATGATATTCTCTCTAGAGACTTAGCTTCAGGTGTTCAACCTTGAGTAGAAGGTTGGAAAAGCCCCATTTAGAGATACCATACAAATACATCAAAATCTCAAGTTTTTGGCCTATTGTTTTATGCCTCAAAACAATAAAACAAATTAACCACGAGTGCCTCTAACATCTATTTAAATTTACTGAGAAACAATGGACAGTACCTATTAGTCCACCTCTAAAGAAAGCTCACACATCAACAAATTATAAATTGTATTAAAACCAATGCTACATAGTTTGATTTGTATAAATATGTGGTTCGTGCTTTAAAATATTAGAGTATTGTAAAATTGCAAGAAATTTCATGCAGTCAAAACCAATGAAATTAGTGGTAGTGAAAGCTAACAATCAATGGAGCAAATTGTGTTCTATACATTACATAAAGCCAATGGTAATGAAAATGAAAAAAAAAAAAAAAAGAATAGTGCTTGCCTTCGAAGATGCTCATTGGCTCTATCCTCTAAGTGCCCTATAAAAAGAAAGAAAAGATTAAAAGCAAATGCTAAGTGGAGGGAAGCTTGTGTTTCAAAATAACAGAAAAAACTGTGAAAGAATCACGTAGAATAAGGCTTTTCGACTTTCCTTGACCCACTTTTGAATGTCTATCTCTAATCTGTAATAAAGTCTCTCGTAATCTTATCTCTTGTGCCTTCCTTTATTGTTATGATTAGATCAATGATAAGATGAAGACAAAAGACGAGGCGTCCTTCTCGCTCGAGCAAAGTTGGGCACAAAATGTACTGGTCCATGATCTGTAACTTTGCCAGCCAAAGGGGAAGAAAGCACCATTGATGGGAAAGAGATTAGAGAGAGTTTTCTTTTGGATTCTGTTCAAGGGAACAACTGATTATGCTTCCGATTGTAACTTAACGTTTTGGCGTTTGAACATTGTATCTAATAACGATTCAGAATCCGTAAAAGGTTTGAGAAACTTTTTTCCTTGTTCACCAAGTTGTTGATGGGACAATGGTATGTGAAACATATTGGAATTTCATCTTGTCAAAGATGGTATGAGCAGAAACTTCAATATATGAGGGTAACTCTTTTTCCCAGTTCTAAATGAAGACCACTGCCCTTGGGTATAGTTCTACCAAAAAGACGATGGTCTTTTATGTGTTCTTGTTTTCATCTGGAATGTTAACTTTTGCAATACCTTCAATCAATGTGAAATAAGTAGTATCATCAGGTGTCATTCCTTTACTTACCATTTCTTTAAGAAGCTCTTCAGCAAGATCACCTTCTTGGTTTTTGCATAACCCTTGTACAAGGGCATTATAAGTTAGAACAGTCGGATTGAATCCTGTATCAAGCATCTCATTCCGTACTCTGAAAGCATCCTTTATGTCTCCTCGTCTACTATAACCACTAATCAGTGTATTGAAACTAATATGGTCGGGCTTAATCCCTCTTCTCTTCATCTCGTCAAAAAGTTCACGGGCTTCTTCAACTTTTCCTTCCCTGCAATGGCCTTGCATTATGGTATTGAAAGTCACTTCATCGGGTGGAACCTTCATCCTATCCATATCTTTCAGAAGCTCAAATGCACCCTTGACATTACTGTTAGAACAATGACCATCAATCAAAGCATTAAACATAATGACATCAGGCAACACACCTTCACTTGTGATCTTCTTAAACAAATCATCTGCCTCCTTCATTCTGTTCTTTTTGCTCAAAACATGAAGAAGTGATGTGTATGTCTTTTTTGTCGGCTTAATACCACTCGCCAACATTTCATCATGTAGAAGAAATGCTTTCTTTGCATTTGCACATCTACAATACCCATTTATCAAGATATTATATGTAATAGCATCAGGAGATATTCCTTTCTCCTGAATTTCTTTGATCATACATTCAGCTTCATCTGTTCTTTGCTCCATAAACAATGCATGAATCAACGAGTTATAAGTTGACATGGTTGGACTTATGCCCTTCTTCAACATCTCATCCTTGTAAGCAGAGGCCATATCCAAATTACCCTTATTACAAAATCCATCAATCAAAGTATTATAAATTACAGCACTAGGTCGCAACCCCTTTTGAACCATTTCTTCAAAAATCTTTGATGCTTCTTCAAGTCTTCCTTGCTTGCACATCCCACTGATAAGAGATCCATATGTGAAAGAATCAGGTTCAATCTTTTGTCTCTTCATAGTAGTCAAAATAGCATCAGCCGCTTCAACTCTTCCGCTCGAACAATATCCATGAACAATCGTATTGTAAGTAACGATATTCGGTTTAACCCCTGAAGTCTCCATATGCCCAACGAAATCCTTAGCCTTCTTCAACTTCCCCTCTTTGCATAGAACATTAATCATAATGTTGAACGTATAAACGCTAGATTTAATTCTCAATCTAAACATCTCAGCATACAAAACCCAAGCTGCCTCAGTTCTATTCAACTTCAGAAACAAACTCAGCAAACTGTTGCAAGTCTCAATGGTAGGTAAGACACCCTTTTCCTTCATAGTGTAAAAACATTCAAAAGCCTCATCTGCCCTATTCATGTCACAGCAAGACTTAATCAAGTAATCAAAAACAATGCTACTTTTGAAACCCAAACGATCACGAGAAGCAGCTAAGAATTCAAAAATCTCCCTAATTGAATTGGTAGTGCCACCCCCAAGAGCCTGTTTGAGAAGGTGTAAGGCGGGTTTGGGAGATGGAAGACGAGCAACAATGACAATGGCAAGGCAAAGAGTTCGGGCATCAGATAGTTTATGGTGAAAATGGTTTAAGAAATCGAGAACAACCTGTGGAGATTCGTGGAGGTTTAGAAGGGTTTGGGAGATAAGAGAGGGAGTAAGAGAGGACTCTACCTGCTTGATGAAATGCCACTGAGAGGAGCGGGCTGATTGTTCGAGAAAATGAGGGGTTAGAGGCGAAGCGAGGTTTGTGGTTGAAACAGGAGATTCCAGTGGAGTTTTTTGGAGAGAAATTGAAGAGAAAGGCTTGAGCTTCAGAGAAGAAAGCTTCGGAATTCTGCAAGGAATCATGTTTAGGGTTTAGCAGATGAGAAAAAGGAGAGAGATTTTGAATACAACCAAAATAAAAAAAAAAAACATAAATTAAATACAACCATCCTTTTAGACTTATTCTCCTAATTAGCATACACTTAATTCTCAATTTTTTAAAGATGCAATACGAATATTGATTTGT

mRNA sequence

ATGAACCACCCAAATTCCTCTTACCTTATCCATTCTTTCTCCATACAAACACTCTTTTCCCCACCCCCACTCCCCCCATCCATTTCTCATCTCATCACTTTCAATTTTCTCTTCCACTCAGGCACCATTCCAATGGCTACAGCCTCCGCTACCCTCTCGACGGCCATGTCCTCCGCCGCCCCCATCTCCGCCGGCTCAAGGCGGCAGAGGCAAACCAATGCCCATTTTATTTCTGGGCTTAACTCCTTTAGTGGCTTGAAAGCTCACAACAATGTCGTCTCCTTAGGCCTTCCCGTTTGTGCTGATCAATCATTTGCAAAAATTGTGAGCTCTTTGAAATACCCATCAAAGGGAAAGGGGAAAAACGGCGGTGGAGCTCTTTCTTCCACTTGTAATGCCGCCGGTGAGATTTTCAGGATTGCTGCCATTATCAATGGCCTGGTTCTTATTGGTGTGGCTGTGGGGTTTGTTCTTCTTCGGATCGAAGCATCTGTGGAGGAGGCAGAGTGA

Coding sequence (CDS)

ATGAACCACCCAAATTCCTCTTACCTTATCCATTCTTTCTCCATACAAACACTCTTTTCCCCACCCCCACTCCCCCCATCCATTTCTCATCTCATCACTTTCAATTTTCTCTTCCACTCAGGCACCATTCCAATGGCTACAGCCTCCGCTACCCTCTCGACGGCCATGTCCTCCGCCGCCCCCATCTCCGCCGGCTCAAGGCGGCAGAGGCAAACCAATGCCCATTTTATTTCTGGGCTTAACTCCTTTAGTGGCTTGAAAGCTCACAACAATGTCGTCTCCTTAGGCCTTCCCGTTTGTGCTGATCAATCATTTGCAAAAATTGTGAGCTCTTTGAAATACCCATCAAAGGGAAAGGGGAAAAACGGCGGTGGAGCTCTTTCTTCCACTTGTAATGCCGCCGGTGAGATTTTCAGGATTGCTGCCATTATCAATGGCCTGGTTCTTATTGGTGTGGCTGTGGGGTTTGTTCTTCTTCGGATCGAAGCATCTGTGGAGGAGGCAGAGTGA

Protein sequence

MNHPNSSYLIHSFSIQTLFSPPPLPPSISHLITFNFLFHSGTIPMATASATLSTAMSSAAPISAGSRRQRQTNAHFISGLNSFSGLKAHNNVVSLGLPVCADQSFAKIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLIGVAVGFVLLRIEASVEEAE

Homology

[Close]

BLAST of CsaV3_7G010090 vs. NCBI nr
Match: XP_004136999.1 (PREDICTED: uncharacterized protein LOC101210164 [Cucumis sativus])

HSP 1 Score: 318.9 bits (816), Expect = 1.0e-83
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0


Query: 1   MNHPNSSYLIHSFSIQTLFSPPPLPPSISHLITFNFLFHSGTIPMATASATLSTAMSSAA 60
           MNHPNSSYLIHSFSIQTLFSPPPLPPSISHLITFNFLFHSGTIPMATASATLSTAMSSAA
Sbjct: 1   MNHPNSSYLIHSFSIQTLFSPPPLPPSISHLITFNFLFHSGTIPMATASATLSTAMSSAA 60

Query: 61  PISAGSRRQRQTNAHFISGLNSFSGLKAHNNVVSLGLPVCADQSFAKIVSSLKYPSKGKG 120
           PISAGSRRQRQTNAHFISGLNSFSGLKAHNNVVSLGLPVCADQSFAKIVSSLKYPSKGKG
Sbjct: 61  PISAGSRRQRQTNAHFISGLNSFSGLKAHNNVVSLGLPVCADQSFAKIVSSLKYPSKGKG 120

Query: 121 KNGGGALSSTCNAAGEIFRIAAIINGLVLIGVAVGFVLLRIEASVEEAE 170
           KNGGGALSSTCNAAGEIFRIAAIINGLVLIGVAVGFVLLRIEASVEEAE
Sbjct: 121 KNGGGALSSTCNAAGEIFRIAAIINGLVLIGVAVGFVLLRIEASVEEAE 169

[Close]

BLAST of CsaV3_7G010090 vs. NCBI nr
Match: KGN43969.1 (hypothetical protein Csa_7G075020 [Cucumis sativus])

HSP 1 Score: 302.4 bits (773), Expect = 9.9e-79
Identity = 169/201 (84.08%), Postives = 169/201 (84.08%), Query Frame = 0


Query: 1   MNHPNSSYLIHSFSIQTLFSPPPLPPSISHLITFNFLFH--------------------- 60
           MNHPNSSYLIHSFSIQTLFSPPPLPPSISHLITFNFLFH                     
Sbjct: 1   MNHPNSSYLIHSFSIQTLFSPPPLPPSISHLITFNFLFHSGSIPSLFLPQNPLFPSQFSL 60

Query: 61  -----------SGTIPMATASATLSTAMSSAAPISAGSRRQRQTNAHFISGLNSFSGLKA 120
                      SGTIPMATASATLSTAMSSAAPISAGSRRQRQTNAHFISGLNSFSGLKA
Sbjct: 61  NIDSSFSLPLLSGTIPMATASATLSTAMSSAAPISAGSRRQRQTNAHFISGLNSFSGLKA 120

Query: 121 HNNVVSLGLPVCADQSFAKIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLV 170
           HNNVVSLGLPVCADQSFAKIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLV
Sbjct: 121 HNNVVSLGLPVCADQSFAKIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLV 180

[Close]

BLAST of CsaV3_7G010090 vs. NCBI nr
Match: XP_008454894.1 (PREDICTED: uncharacterized protein LOC103495201 [Cucumis melo])

HSP 1 Score: 221.9 bits (564), Expect = 1.7e-54
Identity = 119/125 (95.20%), Postives = 123/125 (98.40%), Query Frame = 0


Query: 45  MATASATLSTAMSSAAPISAGSRRQRQTNAHFISGLNSFSGLKAHNNVVSLGLPVCADQS 104
           MATASATLSTAMS+AAPI+AGSRRQRQTN H+I+GLNSF GLKAHNNVVSLGLPVCADQS
Sbjct: 1   MATASATLSTAMSTAAPIAAGSRRQRQTNVHYITGLNSFGGLKAHNNVVSLGLPVCADQS 60

Query: 105 FAKIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLIGVAVGFVLLRIEAS 164
           FAKIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLIGVAVGFVLLRIEAS
Sbjct: 61  FAKIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLIGVAVGFVLLRIEAS 120

Query: 165 VEEAE 170
           VEEAE
Sbjct: 121 VEEAE 125

[Close]

BLAST of CsaV3_7G010090 vs. NCBI nr
Match: XP_022972366.1 (uncharacterized protein LOC111470941 [Cucurbita maxima])

HSP 1 Score: 209.5 bits (532), Expect = 8.7e-51
Identity = 111/124 (89.52%), Postives = 118/124 (95.16%), Query Frame = 0


Query: 46  ATASATLSTAMSSAAPISAGSRRQRQTNAHFISGLNSFSGLKAHNNVVSLGLPVCADQSF 105
           ATASATLS A+S+AAPI+AGSRRQR TN H+I+GLNSF GLKAHNN+ SLGLPVCADQSF
Sbjct: 3   ATASATLSPAISTAAPIAAGSRRQRNTNVHYITGLNSFGGLKAHNNIFSLGLPVCADQSF 62

Query: 106 AKIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLIGVAVGFVLLRIEASV 165
           A IVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVL+GVAVGFVLLRIEASV
Sbjct: 63  ANIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEASV 122

Query: 166 EEAE 170
           EEAE
Sbjct: 123 EEAE 126

[Close]

BLAST of CsaV3_7G010090 vs. NCBI nr
Match: XP_022952989.1 (uncharacterized protein LOC111455503 [Cucurbita moschata])

HSP 1 Score: 207.6 bits (527), Expect = 3.3e-50
Identity = 110/124 (88.71%), Postives = 117/124 (94.35%), Query Frame = 0


Query: 46  ATASATLSTAMSSAAPISAGSRRQRQTNAHFISGLNSFSGLKAHNNVVSLGLPVCADQSF 105
           AT SATLS  +S+AAPI+AGSRRQR TN H+I+GLNSFSGLKAHNN+ SLGLPVCADQSF
Sbjct: 3   ATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQSF 62

Query: 106 AKIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLIGVAVGFVLLRIEASV 165
           A IVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVL+GVAVGFVLLRIEASV
Sbjct: 63  ASIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEASV 122

Query: 166 EEAE 170
           EEAE
Sbjct: 123 EEAE 126

[Close]

BLAST of CsaV3_7G010090 vs. TAIR10
Match: AT2G26500.2 (cytochrome b6f complex subunit (petM), putative)

HSP 1 Score: 116.3 bits (290), Expect = 1.8e-26
Identity = 70/126 (55.56%), Postives = 88/126 (69.84%), Query Frame = 0


Query: 46  ATASATLSTAMSSAAPISAGSRRQRQTNAHFISGLNSFSGLKAHNN-VVSLGLPVCADQS 105
           A A A +S   S     S  ++++ +    +I+GLNS+ GLKA NN VVS+G P+C +Q 
Sbjct: 4   AAAPAVISWTRSGIVSKSGQTQKKSEMKVSYITGLNSYGGLKAQNNKVVSMGSPLCTEQC 63

Query: 106 FAKIVSSLKYPSKGKGKNG-GGALSSTCNAAGEIFRIAAIINGLVLIGVAVGFVLLRIEA 165
           FA +V SL      KG+ G GGALS+TCNA GEIF+IAAI+N L L+GVAVGFVLLRIE 
Sbjct: 64  FANVVMSL------KGRRGNGGALSTTCNAVGEIFKIAAIMNALTLVGVAVGFVLLRIET 123

Query: 166 SVEEAE 170
           SVEEAE
Sbjct: 124 SVEEAE 123

[Close]

BLAST of CsaV3_7G010090 vs. Swiss-Prot
Match: sp|P80883|PETM_SPIOL (Cytochrome b6-f complex subunit 7 (Fragment) OS=Spinacia oleracea OX=3562 GN=petM PE=1 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 8.1e-08
Identity = 29/36 (80.56%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 132 NAAGEIFRIAAIINGLVLIGVAVGFVLLRIEASVEE 168
           NAA EIFRIAA++NGL L+GVA+GFVLLRIEA+VEE
Sbjct: 1   NAAAEIFRIAAVMNGLTLVGVAIGFVLLRIEATVEE 36

[Close]

BLAST of CsaV3_7G010090 vs. TrEMBL
Match: tr|A0A0A0K4W4|A0A0A0K4W4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G075020 PE=3 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 6.6e-79
Identity = 169/201 (84.08%), Postives = 169/201 (84.08%), Query Frame = 0


Query: 1   MNHPNSSYLIHSFSIQTLFSPPPLPPSISHLITFNFLFH--------------------- 60
           MNHPNSSYLIHSFSIQTLFSPPPLPPSISHLITFNFLFH                     
Sbjct: 1   MNHPNSSYLIHSFSIQTLFSPPPLPPSISHLITFNFLFHSGSIPSLFLPQNPLFPSQFSL 60

Query: 61  -----------SGTIPMATASATLSTAMSSAAPISAGSRRQRQTNAHFISGLNSFSGLKA 120
                      SGTIPMATASATLSTAMSSAAPISAGSRRQRQTNAHFISGLNSFSGLKA
Sbjct: 61  NIDSSFSLPLLSGTIPMATASATLSTAMSSAAPISAGSRRQRQTNAHFISGLNSFSGLKA 120

Query: 121 HNNVVSLGLPVCADQSFAKIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLV 170
           HNNVVSLGLPVCADQSFAKIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLV
Sbjct: 121 HNNVVSLGLPVCADQSFAKIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLV 180

[Close]

BLAST of CsaV3_7G010090 vs. TrEMBL
Match: tr|A0A1S3C0U4|A0A1S3C0U4_CUCME (uncharacterized protein LOC103495201 OS=Cucumis melo OX=3656 GN=LOC103495201 PE=3 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 1.1e-54
Identity = 119/125 (95.20%), Postives = 123/125 (98.40%), Query Frame = 0


Query: 45  MATASATLSTAMSSAAPISAGSRRQRQTNAHFISGLNSFSGLKAHNNVVSLGLPVCADQS 104
           MATASATLSTAMS+AAPI+AGSRRQRQTN H+I+GLNSF GLKAHNNVVSLGLPVCADQS
Sbjct: 1   MATASATLSTAMSTAAPIAAGSRRQRQTNVHYITGLNSFGGLKAHNNVVSLGLPVCADQS 60

Query: 105 FAKIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLIGVAVGFVLLRIEAS 164
           FAKIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLIGVAVGFVLLRIEAS
Sbjct: 61  FAKIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLIGVAVGFVLLRIEAS 120

Query: 165 VEEAE 170
           VEEAE
Sbjct: 121 VEEAE 125

[Close]

BLAST of CsaV3_7G010090 vs. TrEMBL
Match: tr|F6HQF8|F6HQF8_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_03s0063g01460 PE=3 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 1.0e-39
Identity = 99/131 (75.57%), Postives = 111/131 (84.73%), Query Frame = 0


Query: 41   GTIPMATASATLSTAMSSAAPISAGSR--RQRQTNAHFISGLNSFSGLKAHNNVVSLGLP 100
            G I MATASATLS +  SAA I+   R  ++R+TN HFI GLNSF GLKA+N+V SLGLP
Sbjct: 1042 GKIAMATASATLSPSTFSAAAIAGLGRTSQRRKTNVHFIGGLNSFDGLKAYNSVASLGLP 1101

Query: 101  VCADQSFAKIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLIGVAVGFVL 160
            VC +QSFAKIV SLK PS+GKG+ GGGALSSTCNA GEIFRIAAI+NGLVL+GVAVGFVL
Sbjct: 1102 VCTEQSFAKIVGSLKSPSQGKGR-GGGALSSTCNAVGEIFRIAAIMNGLVLVGVAVGFVL 1161

Query: 161  LRIEASVEEAE 170
            LRIEASVEEAE
Sbjct: 1162 LRIEASVEEAE 1171

[Close]

BLAST of CsaV3_7G010090 vs. TrEMBL
Match: tr|A5AN62|A5AN62_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_027615 PE=3 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 7.3e-38
Identity = 96/127 (75.59%), Postives = 108/127 (85.04%), Query Frame = 0


Query: 45  MATASATLSTAMSSAAPISAGSR--RQRQTNAHFISGLNSFSGLKAHNNVVSLGLPVCAD 104
           MATASATLS +  SAA I+   R  ++R+TN HFI GLNSF GLKA+N+V SLGLPVC +
Sbjct: 1   MATASATLSPSTFSAAAIAGLGRTSQRRKTNVHFIGGLNSFDGLKAYNSVASLGLPVCTE 60

Query: 105 QSFAKIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLIGVAVGFVLLRIE 164
           QSFAKIV SLK  S+GKG+ GGGALSSTCNA GEIFRIAAI+NGLVL+GVAVGFVLLRIE
Sbjct: 61  QSFAKIVXSLKSXSQGKGR-GGGALSSTCNAVGEIFRIAAIMNGLVLVGVAVGFVLLRIE 120

Query: 165 ASVEEAE 170
           ASVEEAE
Sbjct: 121 ASVEEAE 126

[Close]

BLAST of CsaV3_7G010090 vs. TrEMBL
Match: tr|A0A0D2NR38|A0A0D2NR38_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_002G214600 PE=3 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 8.1e-37
Identity = 93/124 (75.00%), Postives = 107/124 (86.29%), Query Frame = 0


Query: 47  TASATLSTAMSSAAPISAGS-RRQRQTNAHFISGLNSFSGLKAHNNVVSLGLPVCADQSF 106
           TASATLS    + AP S G+ RR+ + N ++I+GLNSF GLKAHNNVVSLG PVC +QSF
Sbjct: 4   TASATLSP--PTLAPASVGNPRRRTKVNVNYITGLNSFGGLKAHNNVVSLGQPVCIEQSF 63

Query: 107 AKIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLIGVAVGFVLLRIEASV 166
           AK+VSSL+ PSKGKG +GGGALSSTCNA GEIFRIAAI+NGLVL+GVAVGFVLLRIEAS+
Sbjct: 64  AKVVSSLRAPSKGKG-SGGGALSSTCNAVGEIFRIAAIMNGLVLVGVAVGFVLLRIEASL 123

Query: 167 EEAE 170
           EEAE
Sbjct: 124 EEAE 124

The following BLAST results are available for this feature:

BLAST of CsaV3_7G010090 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004136999.1	1.0e-83	100.00	PREDICTED: uncharacterized protein LOC101210164 [Cucumis sativus]	[more]
KGN43969.1	9.9e-79	84.08	hypothetical protein Csa_7G075020 [Cucumis sativus]	[more]
XP_008454894.1	1.7e-54	95.20	PREDICTED: uncharacterized protein LOC103495201 [Cucumis melo]	[more]
XP_022972366.1	8.7e-51	89.52	uncharacterized protein LOC111470941 [Cucurbita maxima]	[more]
XP_022952989.1	3.3e-50	88.71	uncharacterized protein LOC111455503 [Cucurbita moschata]	[more]

BLAST of CsaV3_7G010090 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G26500.2	1.8e-26	55.56	cytochrome b6f complex subunit (petM), putative	[more]

BLAST of CsaV3_7G010090 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P80883\|PETM_SPIOL	8.1e-08	80.56	Cytochrome b6-f complex subunit 7 (Fragment) OS=Spinacia oleracea OX=3562 GN=pet...	[more]

BLAST of CsaV3_7G010090 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K4W4\|A0A0A0K4W4_CUCSA	6.6e-79	84.08	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G075020 PE=3 SV=1	[more]
tr\|A0A1S3C0U4\|A0A1S3C0U4_CUCME	1.1e-54	95.20	uncharacterized protein LOC103495201 OS=Cucumis melo OX=3656 GN=LOC103495201 PE=...	[more]
tr\|F6HQF8\|F6HQF8_VITVI	1.0e-39	75.57	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_03s0063g01460 PE=3 SV=...	[more]
tr\|A5AN62\|A5AN62_VITVI	7.3e-38	75.59	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_027615 PE=3 SV=1	[more]
tr\|A0A0D2NR38\|A0A0D2NR38_GOSRA	8.1e-37	75.00	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_002G214600 PE=3 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0009512	cytochrome b6f complex

Vocabulary: **INTERPRO**
Term	Definition
IPR012595	PetM_cyt_b6/f_cplx_su7

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0009512	cytochrome b6f complex
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016491	oxidoreductase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G010090.1	CsaV3_7G010090.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012595	PetM of cytochrome b6/f complex subunit 7	PFAM	PF08041	PetM	coord: 135..162 e-value: 1.6E-9 score: 37.0
IPR012595	PetM of cytochrome b6/f complex subunit 7	HAMAP	MF_00396	Cytb6_f_PetM	coord: 133..165 score: 13.017
None	No IPR available	PANTHER	PTHR34951	FAMILY NOT NAMED	coord: 45..169
None	No IPR available	SUPERFAMILY	SSF103441	PetM subunit of the cytochrome b6f complex	coord: 134..166

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_7G010090	CSPI07G07990	Wild cucumber (PI 183967)	cpicucB415
CsaV3_7G010090	Cucsa.220200	Cucumber (Gy14) v1	cgycucB342
CsaV3_7G010090	CmaCh19G006320	Cucurbita maxima (Rimu)	cmacucB0639
CsaV3_7G010090	CmoCh19G006480	Cucurbita moschata (Rifu)	cmocucB0623
CsaV3_7G010090	CsGy7G007540	Cucumber (Gy14) v2	cgybcucB348
CsaV3_7G010090	Carg22042	Silver-seed gourd	carcucB0237
CsaV3_7G010090	Cla015978	Watermelon (97103) v1	cucwmB635
CsaV3_7G010090	MELO3C018419	Melon (DHL92) v3.5.1	cucmeB548
CsaV3_7G010090	ClCG02G005540	Watermelon (Charleston Gray)	cucwcgB572
CsaV3_7G010090	Lsi11G010420	Bottle gourd (USVL1VR-Ls)	cuclsiB530
CsaV3_7G010090	MELO3C018419.2	Melon (DHL92) v3.6.1	cucmedB536
CsaV3_7G010090	Cla97C02G032530	Watermelon (97103) v2	cucwmbB550
CsaV3_7G010090	Bhi05G001029	Wax gourd	cucwgoB688

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_7G010090	Cucumber (Gy14) v2	cgybcucB098
CsaV3_7G010090	Cucurbita maxima (Rimu)	cmacucB0171
CsaV3_7G010090	Cucurbita moschata (Rifu)	cmocucB0160
CsaV3_7G010090	Cucurbita pepo (Zucchini)	cpecucB0323
CsaV3_7G010090	Cucurbita pepo (Zucchini)	cpecucB0868
CsaV3_7G010090	Wild cucumber (PI 183967)	cpicucB122