Cucsa.219300 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.219300
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionSWIB domain-containing protein
Locationscaffold01658 : 1125028 .. 1126906 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCCGAAATTCGACCTTCTCGAGTTATCGCTCTTACCGCTTCTCCTTCTTCGCTTTATCCATTTTTTGAGAACAACCTTTCGTCACTCACTGCCTTCCGGCCATGGCTTTCCTCTCCACCTTCATCGCCGTCAAACCGTCGCTCCTCGTCGTCAAACCCTCCCCCACCACCTCCTCCTCCAACCTCAAGCATCTCAATCAACTCCCTCTCCCTGATTTGCGCTTCCCCCGCACTGTTACCTTCGCTTTAGCGTCCAAGCAGGCCACTGCCCCTAGCCGGGAGCCCCGTGGCATCACGAAGCCCAGGAAAATTTCACCGGAGTTGCAAGCGCTTGTCGGCGCTCCTGAGATTTCCCGCACTCAAGCTCTTAAGGTCATTTGGGCTTACATTAAAGAAAATAATCTTCAGGTAGAATCTCTTTTTCTTTTCGTTTTCTGTTTTTCTTTTTCTTTCCATGCTGTTTTCATTACTTTTCTTTTATATGTTTTTTTTTTCTTCAGTGGGGTTGAAAGTTTATGGGGTTTCCATAGTTTTCTAAACCCTCATTTCAGAACCAGATATTGGATGTTGGTCTTTAGAATTTTTCTTGCTGTGTTCTTTCTGGAATGCGGTTTAATGGTTATTAGATAATGTTTTTTCGACTCTTAATGGTTTATTTTGAAGATTGTTTCGATGTGGTTTTTCTTATTAGTGAAGTTTGTATAAGAAAGTGGGAGATGGTTGCTCTGATTTGTTGGGTTCGGAGGAGGTTGTAAGATATATTGGCATGGTTTGAAAATTTCTTGTTCTGAAATAATGGTTTTGGATTGTTGGTCTTTAGAATTTTCTTGCTGTGTTGTTGTTAGAGTGTGCTTTGATGATCATTGGATGAAAGCTTTTAACAACTCTTAATGCATTATTTTGGAGAGGGTTTAGATGTGGCAAGTGGATAGTAATGCTTGTTACTGGGTTTGAGGCCTTTAAGGTTTCTGAAGAGCTTTTTCTGTTCTGGGTTTCGTTAACTCTTTTCTGATTTGTACATTTGTTTTCAAAGACATGGAACAGTTCTAGAAAAACATACTTTTGTTTTTCGGTTTTCCATTGTTTCATAGATTGAATCCATTCATTTAATAGCTGTTTTTATGAACATAAACACCTTCTGAAATTTATATTGGTAAAAGGTTCTAATTACAGTATCTCTTTCTGTACTCACCACATGCTCTCATTGCGTAGTTTTTACCCTAATTCCTATACGAGCTTTATCATTCTCCTCTTATTTGCTCTCGCCGTAAACTCTCCCACTTTCTTATGCAATTCTGTTTGTCTAAAAACTCGCTCACCATTTTTTGTTCCCTACCTTTAGCTTTGTCATTTACGTTGGTGATATCTACTTTAGTTCCATGAGTTCTCTTACATTACTGCATTAAACTTGTCCTTGGTGTTTCATAAAAGAACATAAATTGGTTATGATAGTTGATGTCTTACAAATCATTGATTTGAAGCACAGAAACAATTTGTTTTTCTTTTAAATTATTTTCTTTATTCTTTCAGAAACCAAGCAACAAGAAAGTCATAGCTTGCGACGAGAAACTGAAGAAGATATTTGGAGGGAAAGATGAGGTTGGATTTCTGGAGATTGCAGGTTTAATAAGTCCACACTTTCTATAATTATTCGAAGTATGGAAGATAGACATAATGGACCATCTTTTCAGTCCATGAATATGAACCTTTTTTTCTTTTTGGTTGTGGGAGTGTCTCAACTCAGGTATTGCTCACTGAATCATGCAGTTGAGAGCCCACCTTATGATTAGTAGTTGAATAGAGAGAAAGAAAGCCTTTGTAAGAACTATGTTTGGTGGTTTATTGTAGAGATTGTTATATGGAAATCTCGTTTAGTTATT

mRNA sequence

TCCGAAATTCGACCTTCTCGAGTTATCGCTCTTACCGCTTCTCCTTCTTCGCTTTATCCATTTTTTGAGAACAACCTTTCGTCACTCACTGCCTTCCGGCCATGGCTTTCCTCTCCACCTTCATCGCCGTCAAACCGTCGCTCCTCGTCGTCAAACCCTCCCCCACCACCTCCTCCTCCAACCTCAAGCATCTCAATCAACTCCCTCTCCCTGATTTGCGCTTCCCCCGCACTGTTACCTTCGCTTTAGCGTCCAAGCAGGCCACTGCCCCTAGCCGGGAGCCCCGTGGCATCACGAAGCCCAGGAAAATTTCACCGGAGTTGCAAGCGCTTGTCGGCGCTCCTGAGATTTCCCGCACTCAAGCTCTTAAGGTCATTTGGGCTTACATTAAAGAAAATAATCTTCAGAAACCAAGCAACAAGAAAGTCATAGCTTGCGACGAGAAACTGAAGAAGATATTTGGAGGGAAAGATGAGGTTGGATTTCTGGAGATTGCAGGTTTAATAAGTCCACACTTTCTATAATTATTCGAAGTATGGAAGATAGACATAATGGACCATCTTTTCAGTCCATGAATATGAACCTTTTTTTCTTTTTGGTTGTGGGAGTGTCTCAACTCAGGTATTGCTCACTGAATCATGCAGTTGAGAGCCCACCTTATGATTAGTAGTTGAATAGAGAGAAAGAAAGCCTTTGTAAGAACTATGTTTGGTGGTTTATTGTAGAGATTGTTATATGGAAATCTCGTTTAGTTATT

Coding sequence (CDS)

ATGGCTTTCCTCTCCACCTTCATCGCCGTCAAACCGTCGCTCCTCGTCGTCAAACCCTCCCCCACCACCTCCTCCTCCAACCTCAAGCATCTCAATCAACTCCCTCTCCCTGATTTGCGCTTCCCCCGCACTGTTACCTTCGCTTTAGCGTCCAAGCAGGCCACTGCCCCTAGCCGGGAGCCCCGTGGCATCACGAAGCCCAGGAAAATTTCACCGGAGTTGCAAGCGCTTGTCGGCGCTCCTGAGATTTCCCGCACTCAAGCTCTTAAGGTCATTTGGGCTTACATTAAAGAAAATAATCTTCAGAAACCAAGCAACAAGAAAGTCATAGCTTGCGACGAGAAACTGAAGAAGATATTTGGAGGGAAAGATGAGGTTGGATTTCTGGAGATTGCAGGTTTAATAAGTCCACACTTTCTATAA

Protein sequence

MAFLSTFIAVKPSLLVVKPSPTTSSSNLKHLNQLPLPDLRFPRTVTFALASKQATAPSREPRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSNKKVIACDEKLKKIFGGKDEVGFLEIAGLISPHFL*
Homology
[Close]
BLAST of Cucsa.219300 vs. Swiss-Prot
Match: UAF30_SCHPO (Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=spp27 PE=1 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.2e-10
Identity = 29/69 (42.03%), Postives = 46/69 (66.67%), Query Frame = 1 

Query: 52  KQATAPSREPRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSNKKVIA 111
           K+   P+  P  + KP K+SP+L   +G  ++SR Q +K +W YIK ++LQ P++K+ I 
Sbjct: 107 KRNQDPANNP--LNKPMKLSPKLAEFLGLEQLSRPQTVKKLWEYIKAHDLQDPNDKRTIL 166

Query: 112 CDEKLKKIF 121
           CD+KLK +F
Sbjct: 167 CDDKLKSVF 173

[Close]
BLAST of Cucsa.219300 vs. Swiss-Prot
Match: TRI1_YEAST (Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRI1 PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.7e-09
Identity = 27/54 (50.00%), Postives = 40/54 (74.07%), Query Frame = 1 

Query: 70  ISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSNKKVIACDEKLKKIFGGK 124
           +S  LQ  +G+ E+ RTQ +K+IW YIKE++LQ P +++ I CDEK++ IFG K
Sbjct: 126 LSAPLQKFLGSEELPRTQVVKMIWQYIKEHDLQNPKDRREILCDEKMEPIFGKK 179

[Close]
BLAST of Cucsa.219300 vs. Swiss-Prot
Match: UAF30_YEAST (Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UAF30 PE=1 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 4.6e-09
Identity = 28/57 (49.12%), Postives = 41/57 (71.93%), Query Frame = 1 

Query: 65  TKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSNKKVIACDEKLKKIFG 122
           T+   +S  L +L+G  E++RT+ ++ +WAYIK +NLQ P+NKK I CDEKL+ I G
Sbjct: 121 TRKVTLSKSLASLLGEHELTRTEVVRRLWAYIKAHNLQNPNNKKEILCDEKLELILG 177

[Close]
BLAST of Cucsa.219300 vs. TrEMBL
Match: A0A0A0K2G6_CUCSA (Brg-1 associated factor OS=Cucumis sativus GN=Csa_7G071540 PE=4 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 1.7e-71
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 1 

Query: 1   MAFLSTFIAVKPSLLVVKPSPTTSSSNLKHLNQLPLPDLRFPRTVTFALASKQATAPSRE 60
           MAFLSTFIAVKPSLLVVKPSPTTSSSNLKHLNQLPLPDLRFPRTVTFALASKQATAPSRE
Sbjct: 1   MAFLSTFIAVKPSLLVVKPSPTTSSSNLKHLNQLPLPDLRFPRTVTFALASKQATAPSRE 60

Query: 61  PRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSNKKVIACDEKLKKIF 120
           PRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSNKKVIACDEKLKKIF
Sbjct: 61  PRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSNKKVIACDEKLKKIF 120

Query: 121 GGKDEVGFLEIAGLISPHFL 141
           GGKDEVGFLEIAGLISPHFL
Sbjct: 121 GGKDEVGFLEIAGLISPHFL 140

[Close]
BLAST of Cucsa.219300 vs. TrEMBL
Match: A0A0D2SYU2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G021200 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 2.5e-38
Identity = 91/139 (65.47%), Postives = 104/139 (74.82%), Query Frame = 1 

Query: 2   AFLSTFIAVKPSLLVVKPSPTTSSSNLKHLNQLPLPDLRFPRTVTFALASKQATAPSREP 61
           AFLSTFI+ +     V  SP +SSS    L  LP   +R  RTVT A AS+ AT P R P
Sbjct: 6   AFLSTFISPQ----TVSFSPKSSSS----LRLLPPTSVRMVRTVTLATASQPATGP-RTP 65

Query: 62  RGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSNKKVIACDEKLKKIFG 121
           RGI KPR+++PE+Q +VG PEI RTQALK IWAYIKE+NLQ P NKK+I CDEKLKKIFG
Sbjct: 66  RGIMKPRRVTPEMQDVVGVPEIPRTQALKQIWAYIKEHNLQDPENKKIINCDEKLKKIFG 125

Query: 122 GKDEVGFLEIAGLISPHFL 141
           GKD +GFLEIAGLISPHFL
Sbjct: 126 GKDRIGFLEIAGLISPHFL 135

[Close]
BLAST of Cucsa.219300 vs. TrEMBL
Match: A0A0B0NPQ8_GOSAR (Protein TRI1 OS=Gossypium arboreum GN=F383_01511 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.3e-37
Identity = 90/139 (64.75%), Postives = 105/139 (75.54%), Query Frame = 1 

Query: 2   AFLSTFIAVKPSLLVVKPSPTTSSSNLKHLNQLPLPDLRFPRTVTFALASKQATAPSREP 61
           AFLSTFI+ +     V  SP + SS    L+ LP  ++R  RTVT A AS+ AT P R P
Sbjct: 6   AFLSTFISPQ----TVSFSPKSFSS----LSLLPPTNVRTVRTVTLATASQPATGP-RTP 65

Query: 62  RGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSNKKVIACDEKLKKIFG 121
           RGI KPR+++PE+Q +VG PEI RTQALK IWAYIKE+NLQ P NKK+I CDEKLKKIFG
Sbjct: 66  RGIMKPRRVTPEMQDVVGVPEIPRTQALKQIWAYIKEHNLQDPENKKIINCDEKLKKIFG 125

Query: 122 GKDEVGFLEIAGLISPHFL 141
           GKD +GFLEIAGLISPHFL
Sbjct: 126 GKDRIGFLEIAGLISPHFL 135

[Close]
BLAST of Cucsa.219300 vs. TrEMBL
Match: M5VLL6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013038mg PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 1.4e-36
Identity = 86/140 (61.43%), Postives = 103/140 (73.57%), Query Frame = 1 

Query: 5   STFIAVKPSLLVVKPSPTTSSSNLKHLNQLPLPD----LRFPRTVTFALASKQATAPSRE 64
           STF++ + S       P TS S+     + P P+    LR  R  T A ASK AT P R+
Sbjct: 10  STFLSGETSSF-----PNTSFSSSSSSLRFPHPNFPANLRMVRIPTLATASKPATTP-RQ 69

Query: 65  PRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSNKKVIACDEKLKKIF 124
           PRGI KPRK+SPE+QALVG PEISRTQALK+IWA+IK+NNLQ P NK++I CDEKLKKIF
Sbjct: 70  PRGIMKPRKVSPEMQALVGTPEISRTQALKLIWAHIKQNNLQDPQNKRIIVCDEKLKKIF 129

Query: 125 GGKDEVGFLEIAGLISPHFL 141
            GKD+VGFLE+AGLI+PHFL
Sbjct: 130 AGKDQVGFLEVAGLITPHFL 143

[Close]
BLAST of Cucsa.219300 vs. TrEMBL
Match: V4UA08_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029545mg PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 5.3e-36
Identity = 81/138 (58.70%), Postives = 100/138 (72.46%), Query Frame = 1 

Query: 3   FLSTFIAVKPSLLVVKPSPTTSSSNLKHLNQLPLPDLRFPRTVTFALASKQATAPSREPR 62
           F +TF++ + +   +KPS +        ++      LR  RTVT A AS +     REPR
Sbjct: 8   FTTTFLSPETASSFLKPSSSGKPGQFSPVH------LRTVRTVTLATASPKPVTGKREPR 67

Query: 63  GITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSNKKVIACDEKLKKIFGG 122
           GI KPR++SPE++A VGAPEI RTQALK+IWA+IK++NLQ P NKKVI CDEKLKKIFGG
Sbjct: 68  GIMKPRRVSPEMEAFVGAPEIPRTQALKLIWAHIKQHNLQDPENKKVIICDEKLKKIFGG 127

Query: 123 KDEVGFLEIAGLISPHFL 141
           +D VGFLEIAGLISPHFL
Sbjct: 128 RDRVGFLEIAGLISPHFL 139

[Close]
BLAST of Cucsa.219300 vs. TAIR10
Match: AT2G14880.1 (AT2G14880.1 SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 138.7 bits (348), Expect = 2.8e-33
Identity = 77/137 (56.20%), Postives = 95/137 (69.34%), Query Frame = 1 

Query: 5   STFIAVKPSLLVVKPSPTTSSSNLKHLNQLPLPDLRFPRTVTFALASKQATAPS-REPRG 64
           STF+ +K +      +P+T  S+L+  +  P   LR  R VT A  S + TA + R PRG
Sbjct: 9   STFLCIKTTSF---RNPSTPLSSLRFASH-PAAKLRLVRAVTSATESSEPTATNKRVPRG 68

Query: 65  ITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSNKKVIACDEKLKKIFGGK 124
           I KPR +SPE+Q +V  PEI+RTQALK IWAYIKE++LQ P NK+ I CDEKLKKIF G+
Sbjct: 69  IMKPRPVSPEMQDIVELPEIARTQALKRIWAYIKEHDLQDPQNKREILCDEKLKKIFEGR 128

Query: 125 DEVGFLEIAGLISPHFL 141
           D VGFLEIA LI PHFL
Sbjct: 129 DRVGFLEIAKLIGPHFL 141

[Close]
BLAST of Cucsa.219300 vs. TAIR10
Match: AT4G34290.1 (AT4G34290.1 SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 130.2 bits (326), Expect = 1.0e-30
Identity = 77/141 (54.61%), Postives = 92/141 (65.25%), Query Frame = 1 

Query: 3   FLSTFIAVKPSLLVVKPSPTTSSSNLKHLNQLPLPDLRFPRTVTFALASKQ---ATAPSR 62
           F +TF+ V  + L    S   S S+L+     P  +LR  R VT A A+      T  +R
Sbjct: 8   FSTTFLCVDTAPL---RSSMLSPSSLRLSPNHPT-NLRMVRAVTSAAAASSDPTTTTKTR 67

Query: 63  EPRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSNKKVIACDEKLKKI 122
           EPRGI KPR +S  +Q +VG PEI RTQALK IWAYIKE++LQ P NK+ I CDEKLKKI
Sbjct: 68  EPRGIMKPRPVSQAMQDVVGVPEIPRTQALKRIWAYIKEHDLQDPQNKRDILCDEKLKKI 127

Query: 123 FGGKDEVGFLEIAGLISPHFL 141
           F GK+ VGFLEIA LI PHFL
Sbjct: 128 FEGKERVGFLEIAKLIGPHFL 144

[Close]
BLAST of Cucsa.219300 vs. TAIR10
Match: AT1G31760.1 (AT1G31760.1 SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 96.3 bits (238), Expect = 1.6e-20
Identity = 47/97 (48.45%), Postives = 64/97 (65.98%), Query Frame = 1 

Query: 43  RTVTFALASKQATAPSREPRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQ 102
           RT+    A+ +A   + E +GI K R +S +L +  G  E++R  ALK +W Y+K +NLQ
Sbjct: 12  RTLMSKAATVEAVTVAGEGKGIFKTRPVSQQLASFAGERELTRGSALKKVWEYVKLHNLQ 71

Query: 103 KPSNKKVIACDEKLKKIFGGKDEVGFLEIAGLISPHF 140
            P+NKK I CD+KLK IF GKD+VG  EI  L+SPHF
Sbjct: 72  NPANKKEIHCDDKLKTIFDGKDKVGITEIMKLLSPHF 108

[Close]
BLAST of Cucsa.219300 vs. TAIR10
Match: AT2G35605.1 (AT2G35605.1 SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 94.0 bits (232), Expect = 8.0e-20
Identity = 49/97 (50.52%), Postives = 59/97 (60.82%), Query Frame = 1 

Query: 43  RTVTFALASKQATAPSREPRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQ 102
           R +    AS       R+  GI K   +S  L   +G  E+SRT A+K IW YIK NNLQ
Sbjct: 9   RVLMAKAASSTGAKTGRQGTGILKVVPVSKPLANFIGENEVSRTTAVKKIWEYIKLNNLQ 68

Query: 103 KPSNKKVIACDEKLKKIFGGKDEVGFLEIAGLISPHF 140
            P NK+ I CDE+LK IF GKD VGFLEI+ L+S HF
Sbjct: 69  NPVNKREILCDEQLKTIFSGKDTVGFLEISKLLSQHF 105

[Close]
BLAST of Cucsa.219300 vs. TAIR10
Match: AT3G03590.1 (AT3G03590.1 SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 92.0 bits (227), Expect = 3.1e-19
Identity = 47/92 (51.09%), Postives = 62/92 (67.39%), Query Frame = 1 

Query: 51  SKQATAPSREPR--GITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSNKK 110
           +K  +   + PR  GI K   +SP L   +G  E SRT A+K IW YIK ++LQ P++K+
Sbjct: 49  AKSDSPAKKTPRSTGIFKVTPVSPVLAQFLGTGETSRTDAIKGIWTYIKSHDLQNPADKR 108

Query: 111 VIACDEKLKKIFGGKDEVGFLEIAGLISPHFL 141
            I CDE LK IF GKD+VGFLEI+ L+SPHF+
Sbjct: 109 EIFCDETLKLIFEGKDKVGFLEISKLLSPHFV 140

[Close]
BLAST of Cucsa.219300 vs. NCBI nr
Match: gi|449438339|ref|XP_004136946.1| (PREDICTED: uncharacterized protein LOC101217337 [Cucumis sativus])

HSP 1 Score: 276.6 bits (706), Expect = 2.5e-71
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 1 

Query: 1   MAFLSTFIAVKPSLLVVKPSPTTSSSNLKHLNQLPLPDLRFPRTVTFALASKQATAPSRE 60
           MAFLSTFIAVKPSLLVVKPSPTTSSSNLKHLNQLPLPDLRFPRTVTFALASKQATAPSRE
Sbjct: 1   MAFLSTFIAVKPSLLVVKPSPTTSSSNLKHLNQLPLPDLRFPRTVTFALASKQATAPSRE 60

Query: 61  PRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSNKKVIACDEKLKKIF 120
           PRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSNKKVIACDEKLKKIF
Sbjct: 61  PRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSNKKVIACDEKLKKIF 120

Query: 121 GGKDEVGFLEIAGLISPHFL 141
           GGKDEVGFLEIAGLISPHFL
Sbjct: 121 GGKDEVGFLEIAGLISPHFL 140

[Close]
BLAST of Cucsa.219300 vs. NCBI nr
Match: gi|659110045|ref|XP_008455019.1| (PREDICTED: uncharacterized protein LOC103495293 [Cucumis melo])

HSP 1 Score: 258.5 bits (659), Expect = 7.0e-66
Identity = 133/143 (93.01%), Postives = 135/143 (94.41%), Query Frame = 1 

Query: 1   MAFLSTFIAVKPSLLVVKPSPTTSSSN---LKHLNQLPLPDLRFPRTVTFALASKQATAP 60
           MAFLSTFIAVKPSLLVVKPSPTTSSS+   LKHLNQLPLPDLRFPRTVTFA AS QATAP
Sbjct: 1   MAFLSTFIAVKPSLLVVKPSPTTSSSSSSSLKHLNQLPLPDLRFPRTVTFAFASNQATAP 60

Query: 61  SREPRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSNKKVIACDEKLK 120
            REPRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPS+KKVI CDEKLK
Sbjct: 61  RREPRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSDKKVIVCDEKLK 120

Query: 121 KIFGGKDEVGFLEIAGLISPHFL 141
            IFGGKDEVGFLEIAGLISPHFL
Sbjct: 121 NIFGGKDEVGFLEIAGLISPHFL 143

[Close]
BLAST of Cucsa.219300 vs. NCBI nr
Match: gi|823203404|ref|XP_012436129.1| (PREDICTED: SWI/SNF complex component SNF12 homolog [Gossypium raimondii])

HSP 1 Score: 166.4 bits (420), Expect = 3.6e-38
Identity = 91/139 (65.47%), Postives = 104/139 (74.82%), Query Frame = 1 

Query: 2   AFLSTFIAVKPSLLVVKPSPTTSSSNLKHLNQLPLPDLRFPRTVTFALASKQATAPSREP 61
           AFLSTFI+ +     V  SP +SSS    L  LP   +R  RTVT A AS+ AT P R P
Sbjct: 6   AFLSTFISPQ----TVSFSPKSSSS----LRLLPPTSVRMVRTVTLATASQPATGP-RTP 65

Query: 62  RGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSNKKVIACDEKLKKIFG 121
           RGI KPR+++PE+Q +VG PEI RTQALK IWAYIKE+NLQ P NKK+I CDEKLKKIFG
Sbjct: 66  RGIMKPRRVTPEMQDVVGVPEIPRTQALKQIWAYIKEHNLQDPENKKIINCDEKLKKIFG 125

Query: 122 GKDEVGFLEIAGLISPHFL 141
           GKD +GFLEIAGLISPHFL
Sbjct: 126 GKDRIGFLEIAGLISPHFL 135

[Close]
BLAST of Cucsa.219300 vs. NCBI nr
Match: gi|728834326|gb|KHG13769.1| (Protein TRI1 [Gossypium arboreum])

HSP 1 Score: 164.1 bits (414), Expect = 1.8e-37
Identity = 90/139 (64.75%), Postives = 105/139 (75.54%), Query Frame = 1 

Query: 2   AFLSTFIAVKPSLLVVKPSPTTSSSNLKHLNQLPLPDLRFPRTVTFALASKQATAPSREP 61
           AFLSTFI+ +     V  SP + SS    L+ LP  ++R  RTVT A AS+ AT P R P
Sbjct: 6   AFLSTFISPQ----TVSFSPKSFSS----LSLLPPTNVRTVRTVTLATASQPATGP-RTP 65

Query: 62  RGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSNKKVIACDEKLKKIFG 121
           RGI KPR+++PE+Q +VG PEI RTQALK IWAYIKE+NLQ P NKK+I CDEKLKKIFG
Sbjct: 66  RGIMKPRRVTPEMQDVVGVPEIPRTQALKQIWAYIKEHNLQDPENKKIINCDEKLKKIFG 125

Query: 122 GKDEVGFLEIAGLISPHFL 141
           GKD +GFLEIAGLISPHFL
Sbjct: 126 GKDRIGFLEIAGLISPHFL 135

[Close]
BLAST of Cucsa.219300 vs. NCBI nr
Match: gi|658057342|ref|XP_008364448.1| (PREDICTED: uncharacterized protein LOC103428126 [Malus domestica])

HSP 1 Score: 162.9 bits (411), Expect = 4.0e-37
Identity = 87/136 (63.97%), Postives = 100/136 (73.53%), Query Frame = 1 

Query: 5   STFIAVKPSLLVVKPSPTTSSSNLKHLNQLPLPDLRFPRTVTFALASKQATAPSREPRGI 64
           STF + + S  +  P  + SSS    L   P  +LR  R  T A ASK AT   REPRGI
Sbjct: 13  STFFSGETSSFISPPFSSPSSS----LRFAPA-NLRMVRIPTLATASKPATTTPREPRGI 72

Query: 65  TKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSNKKVIACDEKLKKIFGGKD 124
            KPRK+SPE+QALVGAPEISRTQALK IWA+IK+NNLQ P NK++I CDEKLKKIF GKD
Sbjct: 73  MKPRKVSPEMQALVGAPEISRTQALKQIWAHIKQNNLQDPQNKRIIVCDEKLKKIFAGKD 132

Query: 125 EVGFLEIAGLISPHFL 141
            VGFLE+AGLI+PHFL
Sbjct: 133 RVGFLEVAGLITPHFL 143

The following BLAST results are available for this feature:
BLAST of Cucsa.219300 vs. Swiss-Prot
Match NameE-valueIdentityDescription
UAF30_SCHPO4.2e-1042.03Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 97... [more]
TRI1_YEAST2.7e-0950.00Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRI1 PE... [more]
UAF30_YEAST4.6e-0949.12Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATC... [more]
BLAST of Cucsa.219300 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K2G6_CUCSA1.7e-71100.00Brg-1 associated factor OS=Cucumis sativus GN=Csa_7G071540 PE=4 SV=1[more]
A0A0D2SYU2_GOSRA2.5e-3865.47Uncharacterized protein OS=Gossypium raimondii GN=B456_008G021200 PE=4 SV=1[more]
A0A0B0NPQ8_GOSAR1.3e-3764.75Protein TRI1 OS=Gossypium arboreum GN=F383_01511 PE=4 SV=1[more]
M5VLL6_PRUPE1.4e-3661.43Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013038mg PE=4 SV=1[more]
V4UA08_9ROSI5.3e-3658.70Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029545mg PE=4 SV=1[more]
BLAST of Cucsa.219300 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G14880.12.8e-3356.20 SWIB/MDM2 domain superfamily protein[more]
AT4G34290.11.0e-3054.61 SWIB/MDM2 domain superfamily protein[more]
AT1G31760.11.6e-2048.45 SWIB/MDM2 domain superfamily protein[more]
AT2G35605.18.0e-2050.52 SWIB/MDM2 domain superfamily protein[more]
AT3G03590.13.1e-1951.09 SWIB/MDM2 domain superfamily protein[more]
BLAST of Cucsa.219300 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449438339|ref|XP_004136946.1|2.5e-71100.00PREDICTED: uncharacterized protein LOC101217337 [Cucumis sativus][more]
gi|659110045|ref|XP_008455019.1|7.0e-6693.01PREDICTED: uncharacterized protein LOC103495293 [Cucumis melo][more]
gi|823203404|ref|XP_012436129.1|3.6e-3865.47PREDICTED: SWI/SNF complex component SNF12 homolog [Gossypium raimondii][more]
gi|728834326|gb|KHG13769.1|1.8e-3764.75Protein TRI1 [Gossypium arboreum][more]
gi|658057342|ref|XP_008364448.1|4.0e-3763.97PREDICTED: uncharacterized protein LOC103428126 [Malus domestica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003121SWIB_MDM2_domain
IPR019835SWIB_domain
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.219300.1Cucsa.219300.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003121SWIB/MDM2 domainGENE3DG3DSA:1.10.245.10coord: 58..139
score: 6.2
IPR003121SWIB/MDM2 domainPFAMPF02201SWIBcoord: 66..139
score: 3.7
IPR003121SWIB/MDM2 domainunknownSSF47592SWIB/MDM2 domaincoord: 60..139
score: 9.16
IPR019835SWIB domainSMARTSM00151swib_2coord: 64..140
score: 7.7
NoneNo IPR availablePANTHERPTHR13844BRG-1 ASSOCIATED FACTOR 60 BAF60coord: 51..140
score: 1.4
NoneNo IPR availablePANTHERPTHR13844:SF8EXPRESSED PROTEINcoord: 51..140
score: 1.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.219300Cla016079Watermelon (97103) v1cgywmB427
Cucsa.219300Csa7G071540Cucumber (Chinese Long) v2cgycuB322
Cucsa.219300MELO3C018505Melon (DHL92) v3.5.1cgymeB379
Cucsa.219300ClCG02G006640Watermelon (Charleston Gray)cgywcgB396
Cucsa.219300CSPI07G07010Wild cucumber (PI 183967)cgycpiB336
Cucsa.219300CmaCh11G017110Cucurbita maxima (Rimu)cgycmaB0620
Cucsa.219300CmaCh19G005640Cucurbita maxima (Rimu)cgycmaB0624
Cucsa.219300CmoCh11G014050Cucurbita moschata (Rifu)cgycmoB0624
Cucsa.219300CmoCh19G005790Cucurbita moschata (Rifu)cgycmoB0627
Cucsa.219300Lsi03G005610Bottle gourd (USVL1VR-Ls)cgylsiB367
Cucsa.219300Cp4.1LG15g04530Cucurbita pepo (Zucchini)cgycpeB0594
Cucsa.219300Cp4.1LG04g07720Cucurbita pepo (Zucchini)cgycpeB0602
Cucsa.219300MELO3C018505.2Melon (DHL92) v3.6.1cgymedB377
Cucsa.219300CsaV3_7G007990Cucumber (Chinese Long) v3cgycucB342
Cucsa.219300Cla97C02G033620Watermelon (97103) v2cgywmbB395
Cucsa.219300Bhi05G000883Wax gourdcgywgoB449
Cucsa.219300Carg26995Silver-seed gourdcarcgyB0228
Cucsa.219300Carg16346Silver-seed gourdcarcgyB0524
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.219300Cucumber (Chinese Long) v3cgycucB336
Cucsa.219300Cucumber (Chinese Long) v3cgycucB339
Cucsa.219300Cucumber (Chinese Long) v3cgycucB340
Cucsa.219300Watermelon (97103) v2cgywmbB397
Cucsa.219300Watermelon (97103) v2cgywmbB396
Cucsa.219300Watermelon (97103) v2cgywmbB393
Cucsa.219300Watermelon (97103) v2cgywmbB398
Cucsa.219300Wax gourdcgywgoB443
Cucsa.219300Wax gourdcgywgoB445
Cucsa.219300Wax gourdcgywgoB452
Cucsa.219300Wax gourdcgywgoB454
Cucsa.219300Cucumber (Gy14) v1cgycgyB118
Cucsa.219300Cucumber (Gy14) v1cgycgyB119
Cucsa.219300Cucurbita maxima (Rimu)cgycmaB0623
Cucsa.219300Cucurbita maxima (Rimu)cgycmaB0629
Cucsa.219300Cucurbita moschata (Rifu)cgycmoB0621
Cucsa.219300Cucurbita moschata (Rifu)cgycmoB0625
Cucsa.219300Cucurbita moschata (Rifu)cgycmoB0626
Cucsa.219300Cucurbita moschata (Rifu)cgycmoB0632
Cucsa.219300Wild cucumber (PI 183967)cgycpiB331
Cucsa.219300Wild cucumber (PI 183967)cgycpiB334
Cucsa.219300Cucumber (Chinese Long) v2cgycuB318
Cucsa.219300Cucumber (Chinese Long) v2cgycuB321
Cucsa.219300Melon (DHL92) v3.5.1cgymeB380
Cucsa.219300Melon (DHL92) v3.5.1cgymeB382
Cucsa.219300Watermelon (Charleston Gray)cgywcgB393
Cucsa.219300Watermelon (Charleston Gray)cgywcgB398
Cucsa.219300Watermelon (Charleston Gray)cgywcgB399
Cucsa.219300Watermelon (97103) v1cgywmB421
Cucsa.219300Watermelon (97103) v1cgywmB422
Cucsa.219300Watermelon (97103) v1cgywmB424
Cucsa.219300Cucurbita pepo (Zucchini)cgycpeB0592
Cucsa.219300Cucurbita pepo (Zucchini)cgycpeB0593
Cucsa.219300Cucurbita pepo (Zucchini)cgycpeB0599
Cucsa.219300Cucurbita pepo (Zucchini)cgycpeB0603
Cucsa.219300Bottle gourd (USVL1VR-Ls)cgylsiB366
Cucsa.219300Bottle gourd (USVL1VR-Ls)cgylsiB368
Cucsa.219300Bottle gourd (USVL1VR-Ls)cgylsiB370
Cucsa.219300Melon (DHL92) v3.6.1cgymedB378
Cucsa.219300Melon (DHL92) v3.6.1cgymedB380
Cucsa.219300Melon (DHL92) v3.6.1cgymedB381
Cucsa.219300Silver-seed gourdcarcgyB0221
Cucsa.219300Silver-seed gourdcarcgyB0344
Cucsa.219300Silver-seed gourdcarcgyB0434
Cucsa.219300Silver-seed gourdcarcgyB0873