CmaCh19G005640 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh19G005640
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	SWIb domain-containing protein
Location	Cma_Chr19 : 6390924 .. 6393241 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCGACTTTCGAGCTTCTCGTCTCACCGCTTCATCTTCGCTCTATCCATTTTTCCAACGTGCACGCAACCAGTCGTCAGTTCCGGCCATGGCTTTCGTCTCCACCTTCGTCTCCGGCGAGCTGTCGCTCCTCCTCGCCAGAGCCTCCGCTGTCGTCTCCTCCGTCAAGCATCCTTATCAACTTCCTTTGCCTAATTTGCGCTTCTCCCGCACCATTACCTTCGCTTCCGCCTCCAACCAGGCCACTGCGTCCTCCCGGCAGCCCCGTGGCATCATGAAGCCCCGGAGGATTTCGCCGGAGATGCAGGCGCTTGTTGGTGCTCCCGAGATTTCTCGTACCCAAGCCCTTAAGGTTATTTGGGCTCACATTAAAGAACATAATCTTCAGGTAGACTCTCTCCTTCCTCTGTTGTTTTTTATTTTTCTTTTTTCATTCCTCGTTGTTCTTTCATTCATCTGTTGATGTTACTAGTTTTCAGAGAATAATCCTTCAAGTTTATGGTATTTTTTTTCTTGAGTTCTGTTGTTTGATGTATCGCCATGGATGAAGAATATCTTGTGCTGAAATTAATCCAAGATCTCCTTTCAGAACAAGACATTGGATCTTGTTCTTTAGAATTTTCTTACAGTTTTCTTTCTAGAATACTCTTTAATGACCGTTAGATTATGTTTCTTCCACTCATAAATCATTTGTTTCCAAGATGCTTTAGAATGTGGCCTTTTGTATTAGTGAAGTTTGCAAGTTTAGGAGATTTTTGCTCAGAGTTGTTTGGTTCTGAGGAGGCTGTAAGATGTATTGGCATGGCTTGAAAATGTCTTGGTCTGAAACGAGGGTTTTGGAGGTTAGTGTACACCTAAGTCCACCGCTAGCCGATGTTGTCATATCGGGCGGTGTGCCATCGTAGACGCTGGTTCTCGAAGGGGGTGGATTGTGAGATCTCTCATCGGTTGAAGATGGGAACGAAGGGTGTGGAAACCTCTCCCTCGTAGACGCGTTTTAAAAACCTTGAGGGAAACCCCAAAAAGGAAAGTTTATATGGGAACGACAATATCGGCTAGCAATTAGGGTTTAGGGTTTAGAAATTAGGGGTTGAAAGCATACAACCTCACAACCCTAAAGTTGAGTCGATTTGTTGTTTTGTTTTCGATTATTTCTTCATTCCTATAGAAACTTAGTGACAAAAAATCATAATTTGCGACATAGTTGGCTCCTTAGAAATCAAGGGTTCAAAGCACGAAACCCCAAAACCCGAATGTTGAGGCGATTCGTTGTTTTATTTTTTATAACTTCTTCATTCTTATAGAAACCTAGTGAGAAGAAAATCATAATTTGCAATGTAGTTGGCTCATGAACCCTAGAACCCCAAAGTTAAGTCGATTCATTGTTTTGTTTTTTTATAATTTCTTCATTCTTATAGAAACCTAGTGACAAGAAAATCATAATTTGCAAAGTAGTTGGCTCATTAGAAATCAGGGTTTCAAAGCACGGAACCCTAAAACCCCGAAGTCGAGTTGATTTGTTGTTTTGTTTATGATAATTTCTTCATTCGGATAGAAACCTAGTGACAAGAAAGTCATAATTTGCAACATAGTTGGCTCCTTAGGCATCAGGGGTACAAACCCCAGAACCCCGAAGTCGAGTCGTTTAGTTGTTCTGTTTTTGATAATTTCTTCATTCTTATAGAAACCCAGTGACAAGAAAATCATAATTTGGGACGTAGTTATTTCCCTAGAAATTATCAGGGGTTCAAATCATGGAACCCCTAACTCCGAAGTCGAGTCGATTCATTGTTTTGTTTATTATAATTTCTTCATTCTTACAGAAACCTAGCGACAAGAAAATCATAATGTGCGACGAGAAGCTGAAGAAAATATTCGGAGGGAAAGATGAAGTCGGGTTTCTGGAGATTGCTGGGCTAATAAGTTCCCACTTTCTATGATGATTTGAAGAACGGAAGATGAACTTTGTTTGTTTGTTTTGGGAGTAGCTCAGGTACACTGCTCACTGAATCCTGCAGTTCATAGCTCTCTTTTTGTTAAGTAGTTGGATAGAGAAGAAGCTTTTGTAAGAACATGTTTATGTAGGGATTGTTCTATGGAAATCTTTGTTACTCATTAGTTTGGGTAAAATGTGTTACTTTTGTACTCTACATGCCTGCTTTTTCTGCTTCCGTTCGCCCTATCTTAGTCTCGAGTGCCTCGATGTATAAATATTAGTCAATTTGACCGTCACTCCGTGGTGAAACATGGTATTATCTATTGGTATGTCGTTGCTAGTCATAGTGTAGTTGCTAAAATTAAACAACACGAGCTTCTAAAC

mRNA sequence

TCGACTTTCGAGCTTCTCGTCTCACCGCTTCATCTTCGCTCTATCCATTTTTCCAACGTGCACGCAACCAGTCGTCAGTTCCGGCCATGGCTTTCGTCTCCACCTTCGTCTCCGGCGAGCTGTCGCTCCTCCTCGCCAGAGCCTCCGCTGTCGTCTCCTCCGTCAAGCATCCTTATCAACTTCCTTTGCCTAATTTGCGCTTCTCCCGCACCATTACCTTCGCTTCCGCCTCCAACCAGGCCACTGCGTCCTCCCGGCAGCCCCGTGGCATCATGAAGCCCCGGAGGATTTCGCCGGAGATGCAGGCGCTTGTTGGTGCTCCCGAGATTTCTCGTACCCAAGCCCTTAAGGTTATTTGGGCTCACATTAAAGAACATAATCTTCAGAAACCTAGCGACAAGAAAATCATAATGTGCGACGAGAAGCTGAAGAAAATATTCGGAGGGAAAGATGAAGTCGGGTTTCTGGAGATTGCTGGGCTAATAAGTTCCCACTTTCTATGATGATTTGAAGAACGGAAGATGAACTTTGTTTGTTTGTTTTGGGAGTAGCTCAGGTACACTGCTCACTGAATCCTGCAGTTCATAGCTCTCTTTTTGTTAAGTAGTTGGATAGAGAAGAAGCTTTTGTAAGAACATGTTTATGTAGGGATTGTTCTATGGAAATCTTTGTTACTCATTAGTTTGGGTAAAATGTGTTACTTTTGTACTCTACATGCCTGCTTTTTCTGCTTCCGTTCGCCCTATCTTAGTCTCGAGTGCCTCGATGTATAAATATTAGTCAATTTGACCGTCACTCCGTGGTGAAACATGGTATTATCTATTGGTATGTCGTTGCTAGTCATAGTGTAGTTGCTAAAATTAAACAACACGAGCTTCTAAAC

Coding sequence (CDS)

ATGGCTTTCGTCTCCACCTTCGTCTCCGGCGAGCTGTCGCTCCTCCTCGCCAGAGCCTCCGCTGTCGTCTCCTCCGTCAAGCATCCTTATCAACTTCCTTTGCCTAATTTGCGCTTCTCCCGCACCATTACCTTCGCTTCCGCCTCCAACCAGGCCACTGCGTCCTCCCGGCAGCCCCGTGGCATCATGAAGCCCCGGAGGATTTCGCCGGAGATGCAGGCGCTTGTTGGTGCTCCCGAGATTTCTCGTACCCAAGCCCTTAAGGTTATTTGGGCTCACATTAAAGAACATAATCTTCAGAAACCTAGCGACAAGAAAATCATAATGTGCGACGAGAAGCTGAAGAAAATATTCGGAGGGAAAGATGAAGTCGGGTTTCTGGAGATTGCTGGGCTAATAAGTTCCCACTTTCTATGA

Protein sequence

MAFVSTFVSGELSLLLARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQATASSRQPRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKIIMCDEKLKKIFGGKDEVGFLEIAGLISSHFL

Homology

[Close]

BLAST of CmaCh19G005640 vs. Swiss-Prot
Match: TRI1_YEAST (Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRI1 PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 5.3e-10
Identity = 27/54 (50.00%), Postives = 41/54 (75.93%), Query Frame = 1


Query: 68  ISPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKIIMCDEKLKKIFGGK 122
           +S  +Q  +G+ E+ RTQ +K+IW +IKEH+LQ P D++ I+CDEK++ IFG K
Sbjct: 126 LSAPLQKFLGSEELPRTQVVKMIWQYIKEHDLQNPKDRREILCDEKMEPIFGKK 179

[Close]

BLAST of CmaCh19G005640 vs. Swiss-Prot
Match: UAF30_SCHPO (Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=spp27 PE=1 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.2e-09
Identity = 25/55 (45.45%), Postives = 41/55 (74.55%), Query Frame = 1


Query: 64  KPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKIIMCDEKLKKIF 119
           KP ++SP++   +G  ++SR Q +K +W +IK H+LQ P+DK+ I+CD+KLK +F
Sbjct: 119 KPMKLSPKLAEFLGLEQLSRPQTVKKLWEYIKAHDLQDPNDKRTILCDDKLKSVF 173

[Close]

BLAST of CmaCh19G005640 vs. Swiss-Prot
Match: UAF30_YEAST (Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UAF30 PE=1 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 4.5e-09
Identity = 28/69 (40.58%), Postives = 47/69 (68.12%), Query Frame = 1


Query: 68  ISPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKIIMCDEKLKKIFGGKDEVGFL 127
           +S  + +L+G  E++RT+ ++ +WA+IK HNLQ P++KK I+CDEKL+ I G        
Sbjct: 126 LSKSLASLLGEHELTRTEVVRRLWAYIKAHNLQNPNNKKEILCDEKLELILG--KSTNMF 185

Query: 128 EIAGLISSH 137
           E+  +++SH
Sbjct: 186 EMHKILASH 192

[Close]

BLAST of CmaCh19G005640 vs. TrEMBL
Match: A0A0A0K2G6_CUCSA (Brg-1 associated factor OS=Cucumis sativus GN=Csa_7G071540 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 3.1e-49
Identity = 106/140 (75.71%), Postives = 122/140 (87.14%), Query Frame = 1


Query: 1   MAFVSTFVSGELSLLLARASAVVSS--VKHPYQLPLPNLRFSRTITFASASNQATASSRQ 60
           MAF+STF++ + SLL+ + S   SS  +KH  QLPLP+LRF RT+TFA AS QATA SR+
Sbjct: 1   MAFLSTFIAVKPSLLVVKPSPTTSSSNLKHLNQLPLPDLRFPRTVTFALASKQATAPSRE 60

Query: 61  PRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKIIMCDEKLKKIF 120
           PRGI KPR+ISPE+QALVGAPEISRTQALKVIWA+IKE+NLQKPS+KK+I CDEKLKKIF
Sbjct: 61  PRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSNKKVIACDEKLKKIF 120

Query: 121 GGKDEVGFLEIAGLISSHFL 139
           GGKDEVGFLEIAGLIS HFL
Sbjct: 121 GGKDEVGFLEIAGLISPHFL 140

[Close]

BLAST of CmaCh19G005640 vs. TrEMBL
Match: V4UA08_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029545mg PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 1.4e-36
Identity = 86/136 (63.24%), Postives = 103/136 (75.74%), Query Frame = 1


Query: 3   FVSTFVSGELSLLLARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQATASSRQPRGI 62
           F +TF+S E +    + S   SS K P Q    +LR  RT+T A+AS +     R+PRGI
Sbjct: 8   FTTTFLSPETASSFLKPS---SSGK-PGQFSPVHLRTVRTVTLATASPKPVTGKREPRGI 67

Query: 63  MKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKIIMCDEKLKKIFGGKD 122
           MKPRR+SPEM+A VGAPEI RTQALK+IWAHIK+HNLQ P +KK+I+CDEKLKKIFGG+D
Sbjct: 68  MKPRRVSPEMEAFVGAPEIPRTQALKLIWAHIKQHNLQDPENKKVIICDEKLKKIFGGRD 127

Query: 123 EVGFLEIAGLISSHFL 139
            VGFLEIAGLIS HFL
Sbjct: 128 RVGFLEIAGLISPHFL 139

[Close]

BLAST of CmaCh19G005640 vs. TrEMBL
Match: M5VLL6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013038mg PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 2.3e-36
Identity = 87/135 (64.44%), Postives = 106/135 (78.52%), Query Frame = 1


Query: 5   STFVSGELSLLLARA-SAVVSSVKHPYQLPLPNLRFSRTITFASASNQATASSRQPRGIM 64
           STF+SGE S     + S+  SS++ P+     NLR  R  T A+AS  AT + RQPRGIM
Sbjct: 10  STFLSGETSSFPNTSFSSSSSSLRFPHPNFPANLRMVRIPTLATASKPAT-TPRQPRGIM 69

Query: 65  KPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKIIMCDEKLKKIFGGKDE 124
           KPR++SPEMQALVG PEISRTQALK+IWAHIK++NLQ P +K+II+CDEKLKKIF GKD+
Sbjct: 70  KPRKVSPEMQALVGTPEISRTQALKLIWAHIKQNNLQDPQNKRIIVCDEKLKKIFAGKDQ 129

Query: 125 VGFLEIAGLISSHFL 139
           VGFLE+AGLI+ HFL
Sbjct: 130 VGFLEVAGLITPHFL 143

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BLAST of CmaCh19G005640 vs. TrEMBL
Match: A0A067LIK8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16293 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 3.0e-36
Identity = 85/134 (63.43%), Postives = 100/134 (74.63%), Query Frame = 1


Query: 9   SGELSLLLARASAVVSSVKHPYQLPLP----NLRFSRTITFASASNQATASSRQPRGIMK 68
           SG  S L ++ +    +      LPLP    NLR  RTIT A+AS+Q     R+PRGIMK
Sbjct: 5   SGIFSTLFSQQTVSFLNPSFSRLLPLPPPSANLRMVRTITCATASSQQQQQERRPRGIMK 64

Query: 69  PRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKIIMCDEKLKKIFGGKDEV 128
           PR +SPEM  LVGAPEI RTQALK+IWA+IKEHNLQ P++KKII+CDEKLKKIFGG+D V
Sbjct: 65  PRPVSPEMADLVGAPEIPRTQALKLIWAYIKEHNLQDPNNKKIIICDEKLKKIFGGRDSV 124

Query: 129 GFLEIAGLISSHFL 139
           GFLE+AGLIS HFL
Sbjct: 125 GFLEVAGLISPHFL 138

[Close]

BLAST of CmaCh19G005640 vs. TrEMBL
Match: A0A061E193_THECC (SWIB/MDM2 domain superfamily protein OS=Theobroma cacao GN=TCM_007182 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.5e-35
Identity = 87/138 (63.04%), Postives = 107/138 (77.54%), Query Frame = 1


Query: 2   AFVSTFVSGELSLLLARASAVVSSVKHPYQLPLP-NLRFSRTITFASASNQATASSRQPR 61
           A  STF+S +     A++S+  SS++    LPLP N+R  R +T A+AS  AT  +RQPR
Sbjct: 6   AIFSTFISSQTGSFSAKSSS--SSLR----LPLPTNVRMGRAVTQAAASKPATG-TRQPR 65

Query: 62  GIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKIIMCDEKLKKIFGG 121
           GIMKP+R+S EMQA+VG PEI RTQALK IWA+IKEHNLQ P +K++I+CDEKLKKIFGG
Sbjct: 66  GIMKPQRVSAEMQAVVGDPEIPRTQALKRIWAYIKEHNLQDPENKRVIICDEKLKKIFGG 125

Query: 122 KDEVGFLEIAGLISSHFL 139
           KD VGFLE+AGLIS HFL
Sbjct: 126 KDRVGFLEVAGLISPHFL 136

[Close]

BLAST of CmaCh19G005640 vs. TAIR10
Match: AT2G14880.1 (AT2G14880.1 SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 132.1 bits (331), Expect = 2.6e-31
Identity = 67/107 (62.62%), Postives = 84/107 (78.50%), Query Frame = 1


Query: 33  PLPNLRFSRTITFASASNQATASSRQ-PRGIMKPRRISPEMQALVGAPEISRTQALKVIW 92
           P   LR  R +T A+ S++ TA++++ PRGIMKPR +SPEMQ +V  PEI+RTQALK IW
Sbjct: 35  PAAKLRLVRAVTSATESSEPTATNKRVPRGIMKPRPVSPEMQDIVELPEIARTQALKRIW 94

Query: 93  AHIKEHNLQKPSDKKIIMCDEKLKKIFGGKDEVGFLEIAGLISSHFL 139
           A+IKEH+LQ P +K+ I+CDEKLKKIF G+D VGFLEIA LI  HFL
Sbjct: 95  AYIKEHDLQDPQNKREILCDEKLKKIFEGRDRVGFLEIAKLIGPHFL 141

[Close]

BLAST of CmaCh19G005640 vs. TAIR10
Match: AT4G34290.1 (AT4G34290.1 SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 127.1 bits (318), Expect = 8.4e-30
Identity = 74/142 (52.11%), Postives = 95/142 (66.90%), Query Frame = 1


Query: 3   FVSTFVSGELSLL---LARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQ---ATASS 62
           F +TF+  + + L   +   S++  S  HP      NLR  R +T A+A++     T  +
Sbjct: 8   FSTTFLCVDTAPLRSSMLSPSSLRLSPNHP-----TNLRMVRAVTSAAAASSDPTTTTKT 67

Query: 63  RQPRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKIIMCDEKLKK 122
           R+PRGIMKPR +S  MQ +VG PEI RTQALK IWA+IKEH+LQ P +K+ I+CDEKLKK
Sbjct: 68  REPRGIMKPRPVSQAMQDVVGVPEIPRTQALKRIWAYIKEHDLQDPQNKRDILCDEKLKK 127

Query: 123 IFGGKDEVGFLEIAGLISSHFL 139
           IF GK+ VGFLEIA LI  HFL
Sbjct: 128 IFEGKERVGFLEIAKLIGPHFL 144

[Close]

BLAST of CmaCh19G005640 vs. TAIR10
Match: AT2G35605.1 (AT2G35605.1 SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 91.3 bits (225), Expect = 5.1e-19
Identity = 46/97 (47.42%), Postives = 64/97 (65.98%), Query Frame = 1


Query: 41  RTITFASASNQATASSRQPRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQ 100
           R +   +AS+    + RQ  GI+K   +S  +   +G  E+SRT A+K IW +IK +NLQ
Sbjct: 9   RVLMAKAASSTGAKTGRQGTGILKVVPVSKPLANFIGENEVSRTTAVKKIWEYIKLNNLQ 68

Query: 101 KPSDKKIIMCDEKLKKIFGGKDEVGFLEIAGLISSHF 138
            P +K+ I+CDE+LK IF GKD VGFLEI+ L+S HF
Sbjct: 69  NPVNKREILCDEQLKTIFSGKDTVGFLEISKLLSQHF 105

[Close]

BLAST of CmaCh19G005640 vs. TAIR10
Match: AT3G03590.1 (AT3G03590.1 SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 89.7 bits (221), Expect = 1.5e-18
Identity = 56/140 (40.00%), Postives = 76/140 (54.29%), Query Frame = 1


Query: 1   MAFVSTFVSGELSLLLARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQATASSRQPR 60
           M+ V+  V      LLA AS   SS+        P  +          +   + + + PR
Sbjct: 1   MSSVAAMVFRGARSLLAPASRATSSLVSAGSTKKPAAKPKAKAKPKPKAKSDSPAKKTPR 60

Query: 61  --GIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKIIMCDEKLKKIF 120
             GI K   +SP +   +G  E SRT A+K IW +IK H+LQ P+DK+ I CDE LK IF
Sbjct: 61  STGIFKVTPVSPVLAQFLGTGETSRTDAIKGIWTYIKSHDLQNPADKREIFCDETLKLIF 120

Query: 121 GGKDEVGFLEIAGLISSHFL 139
            GKD+VGFLEI+ L+S HF+
Sbjct: 121 EGKDKVGFLEISKLLSPHFV 140

[Close]

BLAST of CmaCh19G005640 vs. TAIR10
Match: AT1G31760.1 (AT1G31760.1 SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 89.4 bits (220), Expect = 1.9e-18
Identity = 43/97 (44.33%), Postives = 64/97 (65.98%), Query Frame = 1


Query: 41  RTITFASASNQATASSRQPRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQ 100
           RT+   +A+ +A   + + +GI K R +S ++ +  G  E++R  ALK +W ++K HNLQ
Sbjct: 12  RTLMSKAATVEAVTVAGEGKGIFKTRPVSQQLASFAGERELTRGSALKKVWEYVKLHNLQ 71

Query: 101 KPSDKKIIMCDEKLKKIFGGKDEVGFLEIAGLISSHF 138
            P++KK I CD+KLK IF GKD+VG  EI  L+S HF
Sbjct: 72  NPANKKEIHCDDKLKTIFDGKDKVGITEIMKLLSPHF 108

[Close]

BLAST of CmaCh19G005640 vs. NCBI nr
Match: gi|449438339|ref|XP_004136946.1| (PREDICTED: uncharacterized protein LOC101217337 [Cucumis sativus])

HSP 1 Score: 202.6 bits (514), Expect = 4.5e-49
Identity = 106/140 (75.71%), Postives = 122/140 (87.14%), Query Frame = 1


Query: 1   MAFVSTFVSGELSLLLARASAVVSS--VKHPYQLPLPNLRFSRTITFASASNQATASSRQ 60
           MAF+STF++ + SLL+ + S   SS  +KH  QLPLP+LRF RT+TFA AS QATA SR+
Sbjct: 1   MAFLSTFIAVKPSLLVVKPSPTTSSSNLKHLNQLPLPDLRFPRTVTFALASKQATAPSRE 60

Query: 61  PRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKIIMCDEKLKKIF 120
           PRGI KPR+ISPE+QALVGAPEISRTQALKVIWA+IKE+NLQKPS+KK+I CDEKLKKIF
Sbjct: 61  PRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSNKKVIACDEKLKKIF 120

Query: 121 GGKDEVGFLEIAGLISSHFL 139
           GGKDEVGFLEIAGLIS HFL
Sbjct: 121 GGKDEVGFLEIAGLISPHFL 140

[Close]

BLAST of CmaCh19G005640 vs. NCBI nr
Match: gi|659110045|ref|XP_008455019.1| (PREDICTED: uncharacterized protein LOC103495293 [Cucumis melo])

HSP 1 Score: 202.6 bits (514), Expect = 4.5e-49
Identity = 106/143 (74.13%), Postives = 122/143 (85.31%), Query Frame = 1


Query: 1   MAFVSTFVSGELSLLLARASAVVSS-----VKHPYQLPLPNLRFSRTITFASASNQATAS 60
           MAF+STF++ + SLL+ + S   SS     +KH  QLPLP+LRF RT+TFA ASNQATA 
Sbjct: 1   MAFLSTFIAVKPSLLVVKPSPTTSSSSSSSLKHLNQLPLPDLRFPRTVTFAFASNQATAP 60

Query: 61  SRQPRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKIIMCDEKLK 120
            R+PRGI KPR+ISPE+QALVGAPEISRTQALKVIWA+IKE+NLQKPSDKK+I+CDEKLK
Sbjct: 61  RREPRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSDKKVIVCDEKLK 120

Query: 121 KIFGGKDEVGFLEIAGLISSHFL 139
            IFGGKDEVGFLEIAGLIS HFL
Sbjct: 121 NIFGGKDEVGFLEIAGLISPHFL 143

[Close]

BLAST of CmaCh19G005640 vs. NCBI nr
Match: gi|567860420|ref|XP_006422864.1| (hypothetical protein CICLE_v10029545mg [Citrus clementina])

HSP 1 Score: 160.6 bits (405), Expect = 1.9e-36
Identity = 86/136 (63.24%), Postives = 103/136 (75.74%), Query Frame = 1


Query: 3   FVSTFVSGELSLLLARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQATASSRQPRGI 62
           F +TF+S E +    + S   SS K P Q    +LR  RT+T A+AS +     R+PRGI
Sbjct: 8   FTTTFLSPETASSFLKPS---SSGK-PGQFSPVHLRTVRTVTLATASPKPVTGKREPRGI 67

Query: 63  MKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKIIMCDEKLKKIFGGKD 122
           MKPRR+SPEM+A VGAPEI RTQALK+IWAHIK+HNLQ P +KK+I+CDEKLKKIFGG+D
Sbjct: 68  MKPRRVSPEMEAFVGAPEIPRTQALKLIWAHIKQHNLQDPENKKVIICDEKLKKIFGGRD 127

Query: 123 EVGFLEIAGLISSHFL 139
            VGFLEIAGLIS HFL
Sbjct: 128 RVGFLEIAGLISPHFL 139

[Close]

BLAST of CmaCh19G005640 vs. NCBI nr
Match: gi|658057342|ref|XP_008364448.1| (PREDICTED: uncharacterized protein LOC103428126 [Malus domestica])

HSP 1 Score: 160.6 bits (405), Expect = 1.9e-36
Identity = 86/134 (64.18%), Postives = 100/134 (74.63%), Query Frame = 1


Query: 5   STFVSGELSLLLARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQATASSRQPRGIMK 64
           STF SGE S  +   S   SS     +    NLR  R  T A+AS  AT + R+PRGIMK
Sbjct: 13  STFFSGETSSFI---SPPFSSPSSSLRFAPANLRMVRIPTLATASKPATTTPREPRGIMK 72

Query: 65  PRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKIIMCDEKLKKIFGGKDEV 124
           PR++SPEMQALVGAPEISRTQALK IWAHIK++NLQ P +K+II+CDEKLKKIF GKD V
Sbjct: 73  PRKVSPEMQALVGAPEISRTQALKQIWAHIKQNNLQDPQNKRIIVCDEKLKKIFAGKDRV 132

Query: 125 GFLEIAGLISSHFL 139
           GFLE+AGLI+ HFL
Sbjct: 133 GFLEVAGLITPHFL 143

[Close]

BLAST of CmaCh19G005640 vs. NCBI nr
Match: gi|595793657|ref|XP_007200577.1| (hypothetical protein PRUPE_ppa013038mg [Prunus persica])

HSP 1 Score: 159.8 bits (403), Expect = 3.3e-36
Identity = 87/135 (64.44%), Postives = 106/135 (78.52%), Query Frame = 1


Query: 5   STFVSGELSLLLARA-SAVVSSVKHPYQLPLPNLRFSRTITFASASNQATASSRQPRGIM 64
           STF+SGE S     + S+  SS++ P+     NLR  R  T A+AS  AT + RQPRGIM
Sbjct: 10  STFLSGETSSFPNTSFSSSSSSLRFPHPNFPANLRMVRIPTLATASKPAT-TPRQPRGIM 69

Query: 65  KPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKIIMCDEKLKKIFGGKDE 124
           KPR++SPEMQALVG PEISRTQALK+IWAHIK++NLQ P +K+II+CDEKLKKIF GKD+
Sbjct: 70  KPRKVSPEMQALVGTPEISRTQALKLIWAHIKQNNLQDPQNKRIIVCDEKLKKIFAGKDQ 129

Query: 125 VGFLEIAGLISSHFL 139
           VGFLE+AGLI+ HFL
Sbjct: 130 VGFLEVAGLITPHFL 143

The following BLAST results are available for this feature:

BLAST of CmaCh19G005640 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TRI1_YEAST	5.3e-10	50.00	Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRI1 PE...	[more]
UAF30_SCHPO	1.2e-09	45.45	Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 97...	[more]
UAF30_YEAST	4.5e-09	40.58	Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATC...	[more]

BLAST of CmaCh19G005640 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K2G6_CUCSA	3.1e-49	75.71	Brg-1 associated factor OS=Cucumis sativus GN=Csa_7G071540 PE=4 SV=1	[more]
V4UA08_9ROSI	1.4e-36	63.24	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029545mg PE=4 SV=1	[more]
M5VLL6_PRUPE	2.3e-36	64.44	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013038mg PE=4 SV=1	[more]
A0A067LIK8_JATCU	3.0e-36	63.43	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16293 PE=4 SV=1	[more]
A0A061E193_THECC	1.5e-35	63.04	SWIB/MDM2 domain superfamily protein OS=Theobroma cacao GN=TCM_007182 PE=4 SV=1	[more]

BLAST of CmaCh19G005640 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G14880.1	2.6e-31	62.62	SWIB/MDM2 domain superfamily protein	[more]
AT4G34290.1	8.4e-30	52.11	SWIB/MDM2 domain superfamily protein	[more]
AT2G35605.1	5.1e-19	47.42	SWIB/MDM2 domain superfamily protein	[more]
AT3G03590.1	1.5e-18	40.00	SWIB/MDM2 domain superfamily protein	[more]
AT1G31760.1	1.9e-18	44.33	SWIB/MDM2 domain superfamily protein	[more]

BLAST of CmaCh19G005640 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449438339\|ref\|XP_004136946.1\|	4.5e-49	75.71	PREDICTED: uncharacterized protein LOC101217337 [Cucumis sativus]	[more]
gi\|659110045\|ref\|XP_008455019.1\|	4.5e-49	74.13	PREDICTED: uncharacterized protein LOC103495293 [Cucumis melo]	[more]
gi\|567860420\|ref\|XP_006422864.1\|	1.9e-36	63.24	hypothetical protein CICLE_v10029545mg [Citrus clementina]	[more]
gi\|658057342\|ref\|XP_008364448.1\|	1.9e-36	64.18	PREDICTED: uncharacterized protein LOC103428126 [Malus domestica]	[more]
gi\|595793657\|ref\|XP_007200577.1\|	3.3e-36	64.44	hypothetical protein PRUPE_ppa013038mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003121	SWIB_MDM2_domain
IPR019835	SWIB_domain

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh19G005640.1	CmaCh19G005640.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003121	SWIB/MDM2 domain	GENE3D	G3DSA:1.10.245.10		coord: 56..137 score: 1.9
IPR003121	SWIB/MDM2 domain	PFAM	PF02201	SWIB	coord: 64..137 score: 6.4
IPR003121	SWIB/MDM2 domain	unknown	SSF47592	SWIB/MDM2 domain	coord: 55..137 score: 7.19
IPR019835	SWIB domain	SMART	SM00151	swib_2	coord: 62..138 score: 1.4
None	No IPR available	PANTHER	PTHR13844	BRG-1 ASSOCIATED FACTOR 60 BAF60	coord: 46..138 score: 1.3
None	No IPR available	PANTHER	PTHR13844:SF8	EXPRESSED PROTEIN	coord: 46..138 score: 1.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh19G005640	Cucsa.219300	Cucumber (Gy14) v1	cgycmaB0624
CmaCh19G005640	Cla016079	Watermelon (97103) v1	cmawmB503
CmaCh19G005640	Csa7G071540	Cucumber (Chinese Long) v2	cmacuB528
CmaCh19G005640	MELO3C018505	Melon (DHL92) v3.5.1	cmameB463
CmaCh19G005640	ClCG02G006640	Watermelon (Charleston Gray)	cmawcgB460
CmaCh19G005640	CSPI07G07010	Wild cucumber (PI 183967)	cmacpiB534
CmaCh19G005640	CmoCh19G005790	Cucurbita moschata (Rifu)	cmacmoB508
CmaCh19G005640	CmoCh11G014050	Cucurbita moschata (Rifu)	cmacmoB494
CmaCh19G005640	Lsi03G005610	Bottle gourd (USVL1VR-Ls)	cmalsiB484
CmaCh19G005640	Cp4.1LG15g04530	Cucurbita pepo (Zucchini)	cmacpeB522
CmaCh19G005640	Cp4.1LG04g07720	Cucurbita pepo (Zucchini)	cmacpeB539
CmaCh19G005640	MELO3C018505.2	Melon (DHL92) v3.6.1	cmamedB535
CmaCh19G005640	CsaV3_7G007990	Cucumber (Chinese Long) v3	cmacucB0639
CmaCh19G005640	Cla97C02G033620	Watermelon (97103) v2	cmawmbB531
CmaCh19G005640	Bhi05G000883	Wax gourd	cmawgoB0658
CmaCh19G005640	CsGy7G006580	Cucumber (Gy14) v2	cgybcmaB945
CmaCh19G005640	Carg16346	Silver-seed gourd	carcmaB0632
CmaCh19G005640	Carg26995	Silver-seed gourd	carcmaB0261

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh19G005640	CmaCh11G017110	Cucurbita maxima (Rimu)	cmacmaB149

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh19G005640	Bottle gourd (USVL1VR-Ls)	cmalsiB485
CmaCh19G005640	Bottle gourd (USVL1VR-Ls)	cmalsiB498
CmaCh19G005640	Cucumber (Gy14) v2	cgybcmaB210
CmaCh19G005640	Cucumber (Gy14) v2	cgybcmaB521
CmaCh19G005640	Melon (DHL92) v3.6.1	cmamedB540
CmaCh19G005640	Melon (DHL92) v3.6.1	cmamedB561
CmaCh19G005640	Silver-seed gourd	carcmaB0253
CmaCh19G005640	Silver-seed gourd	carcmaB0407
CmaCh19G005640	Silver-seed gourd	carcmaB0528
CmaCh19G005640	Cucumber (Chinese Long) v3	cmacucB0607
CmaCh19G005640	Cucumber (Chinese Long) v3	cmacucB0627
CmaCh19G005640	Watermelon (97103) v2	cmawmbB535
CmaCh19G005640	Watermelon (97103) v2	cmawmbB546
CmaCh19G005640	Wax gourd	cmawgoB0642
CmaCh19G005640	Wax gourd	cmawgoB0664
CmaCh19G005640	Wax gourd	cmawgoB0672
CmaCh19G005640	Cucurbita maxima (Rimu)	cmacmaB340
CmaCh19G005640	Cucurbita maxima (Rimu)	cmacmaB415
CmaCh19G005640	Cucurbita maxima (Rimu)	cmacmaB457
CmaCh19G005640	Cucurbita maxima (Rimu)	cmacmaB458
CmaCh19G005640	Cucurbita moschata (Rifu)	cmacmoB502
CmaCh19G005640	Cucurbita moschata (Rifu)	cmacmoB530