CmoCh19G005790 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh19G005790
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	SWIb domain-containing protein
Location	Cmo_Chr19 : 6568435 .. 6570105 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCTCACCGCTTCATCCTCGCTCTATCCATTTTTCGAACGTGCACACAACCAGTCGTCAGTTCCGGCCATGGCTTTCGTCTCCACCTTCGTCTCCGGCGAACCGTCGCTCCTCGTCGCCAGAGCCTCCGCTGTCGTCTCCTCCGTCAAGCATCCCTATCAACTTCCTCTGCCTAATTTGCGCTTCTCCCGCACCATTACCTTCGCATCCGCCTCCAACCAGACCACTGCCTCCTCCCGGCAGCCCCGTGGCATCATGAAGCCCCGGAGGATTTCGCCGGAGATGCAGGCGCTTGTTGGTGCTCCCGAGATTTCTCGTACCGAAGCCCTTAAGGTCATTTGGACTCACATTAAAGAACATAATCTTCAGGTAGACTCTCTCCTTTCTCTGTTGTTTTTCATTTTTCTTTTTTCTTTCGTCGTTGTTCTTTCATTCATCTGTTGATGTTACTAGTTTTCGGAGAATAATCCTTCAAGTTTATGGTATTTTTTTTCTCGAGTTCTGTTGTTTGATGTATCGCCATGGATGAAAAATATCTTGTGCTGAAATTAATCCAACATCTCCTTCCAGAACAAGACATTGGATCTTGTTCTTTAGAATTTTCTTACAGTTAAATCATTTGTTTCTTCCACTCTTAAATCATTTGTTTTGAAGATGCTTTAGATGTGACCTTTTTTATTAGTGAAGTTCGTAAGTTTAGGAGACAGAGTTGTTGGGTTCTGAGGAGGCTGTAAGATGTATTGGCATGGCTTGAAAATGTCTTGGTCTGAAACGAGGGTTTTGTAGGTTGATGTACACCTAAGTCCACTGCTAGCCGATGTTGTCATACCGGGCGGTGTGCCATCGTAGATGCTGGTCCTCGAAGAGGGTGGATACGATTGAAGATGAGAATGAAACATTTTTTATAAGGCTGTGAAAACTACCTCCTAGCATACCCGACAATATCTGCTAGCAATTAGGGCTTAGGGTTTAGAAATGAGGGGTTGAAAGCATAGAACCTCACAACCTTGAAGTTGAGTCGATTTGTTGTTTTGTTTCGATTATTTCTTCATTCTTATAGAAAGTTAGTGACAAAAAAATCATAATTTGCGACATAGTTAGCTCCTTGGAAATCAAGGGTTCAAAGCACGAAACCCCCCCATAACTCCATAACTCCAATGTCGAGGTGATTCTTTAATCATAATTTGCAAAGTAGGCTCCTTAGAAATCAGGGTTTCAAAGCACGGAACCCCAAAACCCCGAAGTCGAGTTGATTTGTTGTTTTGTTTATGATAATTTCTTCATTCTTATAGAAACCTAGCGACAAGAAAGCCATAATTTGCGACATAGTTGGCTCCTTAGAAAATCATTTAATTTGGGACGTAGTTAGCTCCCTAGAAATCAAGGGTTCAAAGCATAGAACCCCAGAACCCTGAACTCGAGTCGATTCATTGTTTTGTTTCTAATAATTTCTTCATTCTTACAGAAACCCAGCGACAAGAAAATCATAATATGCGACGAGAAGCTGAAGAAAATATTCGGAGGGAAAGACGAAGTCGGGTTTCTGGAGATTGCAGGGCTAATAAGTTCCCACTTTCTATGATGATTTGAAGAATGGAAGATGAACTTTGTTTGTTCGTTTGTTTCGGGAGTCGCTCAGGTATTATTGCTCACTGAATCCTGCAGTTCATAG

mRNA sequence

GCCTCACCGCTTCATCCTCGCTCTATCCATTTTTCGAACGTGCACACAACCAGTCGTCAGTTCCGGCCATGGCTTTCGTCTCCACCTTCGTCTCCGGCGAACCGTCGCTCCTCGTCGCCAGAGCCTCCGCTGTCGTCTCCTCCGTCAAGCATCCCTATCAACTTCCTCTGCCTAATTTGCGCTTCTCCCGCACCATTACCTTCGCATCCGCCTCCAACCAGACCACTGCCTCCTCCCGGCAGCCCCGTGGCATCATGAAGCCCCGGAGGATTTCGCCGGAGATGCAGGCGCTTGTTGGTGCTCCCGAGATTTCTCGTACCGAAGCCCTTAAGGTCATTTGGACTCACATTAAAGAACATAATCTTCAGAAACCCAGCGACAAGAAAATCATAATATGCGACGAGAAGCTGAAGAAAATATTCGGAGGGAAAGACGAAATGAACTTTGTTTGTTCGTTTGTTTCGGGAGTCGCTCAGGTATTATTGCTCACTGAATCCTGCAGTTCATAG

Coding sequence (CDS)

ATGGCTTTCGTCTCCACCTTCGTCTCCGGCGAACCGTCGCTCCTCGTCGCCAGAGCCTCCGCTGTCGTCTCCTCCGTCAAGCATCCCTATCAACTTCCTCTGCCTAATTTGCGCTTCTCCCGCACCATTACCTTCGCATCCGCCTCCAACCAGACCACTGCCTCCTCCCGGCAGCCCCGTGGCATCATGAAGCCCCGGAGGATTTCGCCGGAGATGCAGGCGCTTGTTGGTGCTCCCGAGATTTCTCGTACCGAAGCCCTTAAGGTCATTTGGACTCACATTAAAGAACATAATCTTCAGAAACCCAGCGACAAGAAAATCATAATATGCGACGAGAAGCTGAAGAAAATATTCGGAGGGAAAGACGAAATGAACTTTGTTTGTTCGTTTGTTTCGGGAGTCGCTCAGGTATTATTGCTCACTGAATCCTGCAGTTCATAG

Homology

[Close]

BLAST of CmoCh19G005790 vs. Swiss-Prot
Match: TRI1_YEAST (Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRI1 PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 7.4e-10
Identity = 27/57 (47.37%), Postives = 42/57 (73.68%), Query Frame = 1


Query: 68  ISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIICDEKLKKIFGGKDEM 125
           +S  +Q  +G+ E+ RT+ +K+IW +IKEH+LQ P D++ I+CDEK++ IFG K  M
Sbjct: 126 LSAPLQKFLGSEELPRTQVVKMIWQYIKEHDLQNPKDRREILCDEKMEPIFGKKMTM 182

[Close]

BLAST of CmoCh19G005790 vs. Swiss-Prot
Match: UAF30_SCHPO (Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=spp27 PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.8e-09
Identity = 24/55 (43.64%), Postives = 41/55 (74.55%), Query Frame = 1


Query: 64  KPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIICDEKLKKIF 119
           KP ++SP++   +G  ++SR + +K +W +IK H+LQ P+DK+ I+CD+KLK +F
Sbjct: 119 KPMKLSPKLAEFLGLEQLSRPQTVKKLWEYIKAHDLQDPNDKRTILCDDKLKSVF 173

[Close]

BLAST of CmoCh19G005790 vs. Swiss-Prot
Match: UAF30_YEAST (Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UAF30 PE=1 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.4e-08
Identity = 26/57 (45.61%), Postives = 40/57 (70.18%), Query Frame = 1


Query: 68  ISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIICDEKLKKIFGGKDEM 125
           +S  + +L+G  E++RTE ++ +W +IK HNLQ P++KK I+CDEKL+ I G    M
Sbjct: 126 LSKSLASLLGEHELTRTEVVRRLWAYIKAHNLQNPNNKKEILCDEKLELILGKSTNM 182

[Close]

BLAST of CmoCh19G005790 vs. TrEMBL
Match: A0A0A0K2G6_CUCSA (Brg-1 associated factor OS=Cucumis sativus GN=Csa_7G071540 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 1.7e-42
Identity = 92/129 (71.32%), Postives = 110/129 (85.27%), Query Frame = 1


Query: 1   MAFVSTFVSGEPSLLVARASAVVSS--VKHPYQLPLPNLRFSRTITFASASNQTTASSRQ 60
           MAF+STF++ +PSLLV + S   SS  +KH  QLPLP+LRF RT+TFA AS Q TA SR+
Sbjct: 1   MAFLSTFIAVKPSLLVVKPSPTTSSSNLKHLNQLPLPDLRFPRTVTFALASKQATAPSRE 60

Query: 61  PRGIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIICDEKLKKIF 120
           PRGI KPR+ISPE+QALVGAPEISRT+ALKVIW +IKE+NLQKPS+KK+I CDEKLKKIF
Sbjct: 61  PRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSNKKVIACDEKLKKIF 120

Query: 121 GGKDEMNFV 128
           GGKDE+ F+
Sbjct: 121 GGKDEVGFL 129

[Close]

BLAST of CmoCh19G005790 vs. TrEMBL
Match: V4UA08_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029545mg PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.2e-29
Identity = 71/125 (56.80%), Postives = 89/125 (71.20%), Query Frame = 1


Query: 3   FVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPRGI 62
           F +TF+S E     A +    SS   P Q    +LR  RT+T A+AS +     R+PRGI
Sbjct: 8   FTTTFLSPE----TASSFLKPSSSGKPGQFSPVHLRTVRTVTLATASPKPVTGKREPRGI 67

Query: 63  MKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIICDEKLKKIFGGKD 122
           MKPRR+SPEM+A VGAPEI RT+ALK+IW HIK+HNLQ P +KK+IICDEKLKKIFGG+D
Sbjct: 68  MKPRRVSPEMEAFVGAPEIPRTQALKLIWAHIKQHNLQDPENKKVIICDEKLKKIFGGRD 127

Query: 123 EMNFV 128
            + F+
Sbjct: 128 RVGFL 128

[Close]

BLAST of CmoCh19G005790 vs. TrEMBL
Match: M5VLL6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013038mg PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 6.4e-29
Identity = 73/124 (58.87%), Postives = 93/124 (75.00%), Query Frame = 1


Query: 5   STFVSGEPSLLVARA-SAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPRGIM 64
           STF+SGE S     + S+  SS++ P+     NLR  R  T A+AS   T + RQPRGIM
Sbjct: 10  STFLSGETSSFPNTSFSSSSSSLRFPHPNFPANLRMVRIPTLATASKPAT-TPRQPRGIM 69

Query: 65  KPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIICDEKLKKIFGGKDE 124
           KPR++SPEMQALVG PEISRT+ALK+IW HIK++NLQ P +K+II+CDEKLKKIF GKD+
Sbjct: 70  KPRKVSPEMQALVGTPEISRTQALKLIWAHIKQNNLQDPQNKRIIVCDEKLKKIFAGKDQ 129

Query: 125 MNFV 128
           + F+
Sbjct: 130 VGFL 132

[Close]

BLAST of CmoCh19G005790 vs. TrEMBL
Match: A0A067LIK8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16293 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.4e-28
Identity = 68/100 (68.00%), Postives = 80/100 (80.00%), Query Frame = 1


Query: 32  LPLP----NLRFSRTITFASASNQTTASSRQPRGIMKPRRISPEMQALVGAPEISRTEAL 91
           LPLP    NLR  RTIT A+AS+Q     R+PRGIMKPR +SPEM  LVGAPEI RT+AL
Sbjct: 28  LPLPPPSANLRMVRTITCATASSQQQQQERRPRGIMKPRPVSPEMADLVGAPEIPRTQAL 87

Query: 92  KVIWTHIKEHNLQKPSDKKIIICDEKLKKIFGGKDEMNFV 128
           K+IW +IKEHNLQ P++KKIIICDEKLKKIFGG+D + F+
Sbjct: 88  KLIWAYIKEHNLQDPNNKKIIICDEKLKKIFGGRDSVGFL 127

[Close]

BLAST of CmoCh19G005790 vs. TrEMBL
Match: A0A061E193_THECC (SWIB/MDM2 domain superfamily protein OS=Theobroma cacao GN=TCM_007182 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 7.1e-28
Identity = 73/127 (57.48%), Postives = 94/127 (74.02%), Query Frame = 1


Query: 2   AFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLP-NLRFSRTITFASASNQTTASSRQPR 61
           A  STF+S +     A++S+  SS++    LPLP N+R  R +T A+AS   T  +RQPR
Sbjct: 6   AIFSTFISSQTGSFSAKSSS--SSLR----LPLPTNVRMGRAVTQAAASKPATG-TRQPR 65

Query: 62  GIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIICDEKLKKIFGG 121
           GIMKP+R+S EMQA+VG PEI RT+ALK IW +IKEHNLQ P +K++IICDEKLKKIFGG
Sbjct: 66  GIMKPQRVSAEMQAVVGDPEIPRTQALKRIWAYIKEHNLQDPENKRVIICDEKLKKIFGG 125

Query: 122 KDEMNFV 128
           KD + F+
Sbjct: 126 KDRVGFL 125

[Close]

BLAST of CmoCh19G005790 vs. TAIR10
Match: AT2G14880.1 (AT2G14880.1 SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 110.5 bits (275), Expect = 8.6e-25
Identity = 54/96 (56.25%), Postives = 74/96 (77.08%), Query Frame = 1


Query: 33  PLPNLRFSRTITFASASNQTTASSRQ-PRGIMKPRRISPEMQALVGAPEISRTEALKVIW 92
           P   LR  R +T A+ S++ TA++++ PRGIMKPR +SPEMQ +V  PEI+RT+ALK IW
Sbjct: 35  PAAKLRLVRAVTSATESSEPTATNKRVPRGIMKPRPVSPEMQDIVELPEIARTQALKRIW 94

Query: 93  THIKEHNLQKPSDKKIIICDEKLKKIFGGKDEMNFV 128
            +IKEH+LQ P +K+ I+CDEKLKKIF G+D + F+
Sbjct: 95  AYIKEHDLQDPQNKREILCDEKLKKIFEGRDRVGFL 130

[Close]

BLAST of CmoCh19G005790 vs. TAIR10
Match: AT4G34290.1 (AT4G34290.1 SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 109.0 bits (271), Expect = 2.5e-24
Identity = 58/111 (52.25%), Postives = 77/111 (69.37%), Query Frame = 1


Query: 20  SAVVSSVKHPYQLPLPNLRFSRTITFASASNQ---TTASSRQPRGIMKPRRISPEMQALV 79
           S++  S  HP      NLR  R +T A+A++    TT  +R+PRGIMKPR +S  MQ +V
Sbjct: 28  SSLRLSPNHP-----TNLRMVRAVTSAAAASSDPTTTTKTREPRGIMKPRPVSQAMQDVV 87

Query: 80  GAPEISRTEALKVIWTHIKEHNLQKPSDKKIIICDEKLKKIFGGKDEMNFV 128
           G PEI RT+ALK IW +IKEH+LQ P +K+ I+CDEKLKKIF GK+ + F+
Sbjct: 88  GVPEIPRTQALKRIWAYIKEHDLQDPQNKRDILCDEKLKKIFEGKERVGFL 133

[Close]

BLAST of CmoCh19G005790 vs. TAIR10
Match: AT3G03590.1 (AT3G03590.1 SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 74.7 bits (182), Expect = 5.2e-14
Identity = 47/129 (36.43%), Postives = 68/129 (52.71%), Query Frame = 1


Query: 1   MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPR 60
           M+ V+  V      L+A AS   SS+        P  +          +   + + + PR
Sbjct: 1   MSSVAAMVFRGARSLLAPASRATSSLVSAGSTKKPAAKPKAKAKPKPKAKSDSPAKKTPR 60

Query: 61  --GIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIICDEKLKKIF 120
             GI K   +SP +   +G  E SRT+A+K IWT+IK H+LQ P+DK+ I CDE LK IF
Sbjct: 61  STGIFKVTPVSPVLAQFLGTGETSRTDAIKGIWTYIKSHDLQNPADKREIFCDETLKLIF 120

Query: 121 GGKDEMNFV 128
            GKD++ F+
Sbjct: 121 EGKDKVGFL 129

[Close]

BLAST of CmoCh19G005790 vs. TAIR10
Match: AT1G49520.1 (AT1G49520.1 SWIB complex BAF60b domain-containing protein)

HSP 1 Score: 73.6 bits (179), Expect = 1.2e-13
Identity = 31/58 (53.45%), Postives = 44/58 (75.86%), Query Frame = 1


Query: 61  GIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIICDEKLKKIF 119
           G  K   +SPE+QA  G P+++RTE +K++W +IKE+NLQ PSDK+ IICDE L+ +F
Sbjct: 250 GFTKVCSLSPELQAFTGTPQLARTEVVKMLWKYIKENNLQDPSDKRTIICDESLRSLF 307

[Close]

BLAST of CmoCh19G005790 vs. TAIR10
Match: AT2G35605.1 (AT2G35605.1 SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 73.2 bits (178), Expect = 1.5e-13
Identity = 37/87 (42.53%), Postives = 55/87 (63.22%), Query Frame = 1


Query: 41  RTITFASASNQTTASSRQPRGIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQ 100
           R +   +AS+    + RQ  GI+K   +S  +   +G  E+SRT A+K IW +IK +NLQ
Sbjct: 9   RVLMAKAASSTGAKTGRQGTGILKVVPVSKPLANFIGENEVSRTTAVKKIWEYIKLNNLQ 68

Query: 101 KPSDKKIIICDEKLKKIFGGKDEMNFV 128
            P +K+ I+CDE+LK IF GKD + F+
Sbjct: 69  NPVNKREILCDEQLKTIFSGKDTVGFL 95

[Close]

BLAST of CmoCh19G005790 vs. NCBI nr
Match: gi|659110045|ref|XP_008455019.1| (PREDICTED: uncharacterized protein LOC103495293 [Cucumis melo])

HSP 1 Score: 181.0 bits (458), Expect = 1.5e-42
Identity = 92/132 (69.70%), Postives = 110/132 (83.33%), Query Frame = 1


Query: 1   MAFVSTFVSGEPSLLVARASAVVSS-----VKHPYQLPLPNLRFSRTITFASASNQTTAS 60
           MAF+STF++ +PSLLV + S   SS     +KH  QLPLP+LRF RT+TFA ASNQ TA 
Sbjct: 1   MAFLSTFIAVKPSLLVVKPSPTTSSSSSSSLKHLNQLPLPDLRFPRTVTFAFASNQATAP 60

Query: 61  SRQPRGIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIICDEKLK 120
            R+PRGI KPR+ISPE+QALVGAPEISRT+ALKVIW +IKE+NLQKPSDKK+I+CDEKLK
Sbjct: 61  RREPRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSDKKVIVCDEKLK 120

Query: 121 KIFGGKDEMNFV 128
            IFGGKDE+ F+
Sbjct: 121 NIFGGKDEVGFL 132

[Close]

BLAST of CmoCh19G005790 vs. NCBI nr
Match: gi|449438339|ref|XP_004136946.1| (PREDICTED: uncharacterized protein LOC101217337 [Cucumis sativus])

HSP 1 Score: 180.3 bits (456), Expect = 2.5e-42
Identity = 92/129 (71.32%), Postives = 110/129 (85.27%), Query Frame = 1


Query: 1   MAFVSTFVSGEPSLLVARASAVVSS--VKHPYQLPLPNLRFSRTITFASASNQTTASSRQ 60
           MAF+STF++ +PSLLV + S   SS  +KH  QLPLP+LRF RT+TFA AS Q TA SR+
Sbjct: 1   MAFLSTFIAVKPSLLVVKPSPTTSSSNLKHLNQLPLPDLRFPRTVTFALASKQATAPSRE 60

Query: 61  PRGIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIICDEKLKKIF 120
           PRGI KPR+ISPE+QALVGAPEISRT+ALKVIW +IKE+NLQKPS+KK+I CDEKLKKIF
Sbjct: 61  PRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSNKKVIACDEKLKKIF 120

Query: 121 GGKDEMNFV 128
           GGKDE+ F+
Sbjct: 121 GGKDEVGFL 129

[Close]

BLAST of CmoCh19G005790 vs. NCBI nr
Match: gi|567860420|ref|XP_006422864.1| (hypothetical protein CICLE_v10029545mg [Citrus clementina])

HSP 1 Score: 136.7 bits (343), Expect = 3.2e-29
Identity = 71/125 (56.80%), Postives = 89/125 (71.20%), Query Frame = 1


Query: 3   FVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPRGI 62
           F +TF+S E     A +    SS   P Q    +LR  RT+T A+AS +     R+PRGI
Sbjct: 8   FTTTFLSPE----TASSFLKPSSSGKPGQFSPVHLRTVRTVTLATASPKPVTGKREPRGI 67

Query: 63  MKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIICDEKLKKIFGGKD 122
           MKPRR+SPEM+A VGAPEI RT+ALK+IW HIK+HNLQ P +KK+IICDEKLKKIFGG+D
Sbjct: 68  MKPRRVSPEMEAFVGAPEIPRTQALKLIWAHIKQHNLQDPENKKVIICDEKLKKIFGGRD 127

Query: 123 EMNFV 128
            + F+
Sbjct: 128 RVGFL 128

[Close]

BLAST of CmoCh19G005790 vs. NCBI nr
Match: gi|658057342|ref|XP_008364448.1| (PREDICTED: uncharacterized protein LOC103428126 [Malus domestica])

HSP 1 Score: 136.0 bits (341), Expect = 5.4e-29
Identity = 72/123 (58.54%), Postives = 87/123 (70.73%), Query Frame = 1


Query: 5   STFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPRGIMK 64
           STF SGE S  +   S   SS     +    NLR  R  T A+AS   T + R+PRGIMK
Sbjct: 13  STFFSGETSSFI---SPPFSSPSSSLRFAPANLRMVRIPTLATASKPATTTPREPRGIMK 72

Query: 65  PRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIICDEKLKKIFGGKDEM 124
           PR++SPEMQALVGAPEISRT+ALK IW HIK++NLQ P +K+II+CDEKLKKIF GKD +
Sbjct: 73  PRKVSPEMQALVGAPEISRTQALKQIWAHIKQNNLQDPQNKRIIVCDEKLKKIFAGKDRV 132

Query: 125 NFV 128
            F+
Sbjct: 133 GFL 132

[Close]

BLAST of CmoCh19G005790 vs. NCBI nr
Match: gi|595793657|ref|XP_007200577.1| (hypothetical protein PRUPE_ppa013038mg [Prunus persica])

HSP 1 Score: 135.2 bits (339), Expect = 9.2e-29
Identity = 73/124 (58.87%), Postives = 93/124 (75.00%), Query Frame = 1


Query: 5   STFVSGEPSLLVARA-SAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPRGIM 64
           STF+SGE S     + S+  SS++ P+     NLR  R  T A+AS   T + RQPRGIM
Sbjct: 10  STFLSGETSSFPNTSFSSSSSSLRFPHPNFPANLRMVRIPTLATASKPAT-TPRQPRGIM 69

Query: 65  KPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIICDEKLKKIFGGKDE 124
           KPR++SPEMQALVG PEISRT+ALK+IW HIK++NLQ P +K+II+CDEKLKKIF GKD+
Sbjct: 70  KPRKVSPEMQALVGTPEISRTQALKLIWAHIKQNNLQDPQNKRIIVCDEKLKKIFAGKDQ 129

Query: 125 MNFV 128
           + F+
Sbjct: 130 VGFL 132

The following BLAST results are available for this feature:

BLAST of CmoCh19G005790 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TRI1_YEAST	7.4e-10	47.37	Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRI1 PE...	[more]
UAF30_SCHPO	2.8e-09	43.64	Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 97...	[more]
UAF30_YEAST	1.4e-08	45.61	Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATC...	[more]

BLAST of CmoCh19G005790 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K2G6_CUCSA	1.7e-42	71.32	Brg-1 associated factor OS=Cucumis sativus GN=Csa_7G071540 PE=4 SV=1	[more]
V4UA08_9ROSI	2.2e-29	56.80	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029545mg PE=4 SV=1	[more]
M5VLL6_PRUPE	6.4e-29	58.87	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013038mg PE=4 SV=1	[more]
A0A067LIK8_JATCU	1.4e-28	68.00	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16293 PE=4 SV=1	[more]
A0A061E193_THECC	7.1e-28	57.48	SWIB/MDM2 domain superfamily protein OS=Theobroma cacao GN=TCM_007182 PE=4 SV=1	[more]

BLAST of CmoCh19G005790 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G14880.1	8.6e-25	56.25	SWIB/MDM2 domain superfamily protein	[more]
AT4G34290.1	2.5e-24	52.25	SWIB/MDM2 domain superfamily protein	[more]
AT3G03590.1	5.2e-14	36.43	SWIB/MDM2 domain superfamily protein	[more]
AT1G49520.1	1.2e-13	53.45	SWIB complex BAF60b domain-containing protein	[more]
AT2G35605.1	1.5e-13	42.53	SWIB/MDM2 domain superfamily protein	[more]

BLAST of CmoCh19G005790 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659110045\|ref\|XP_008455019.1\|	1.5e-42	69.70	PREDICTED: uncharacterized protein LOC103495293 [Cucumis melo]	[more]
gi\|449438339\|ref\|XP_004136946.1\|	2.5e-42	71.32	PREDICTED: uncharacterized protein LOC101217337 [Cucumis sativus]	[more]
gi\|567860420\|ref\|XP_006422864.1\|	3.2e-29	56.80	hypothetical protein CICLE_v10029545mg [Citrus clementina]	[more]
gi\|658057342\|ref\|XP_008364448.1\|	5.4e-29	58.54	PREDICTED: uncharacterized protein LOC103428126 [Malus domestica]	[more]
gi\|595793657\|ref\|XP_007200577.1\|	9.2e-29	58.87	hypothetical protein PRUPE_ppa013038mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003121	SWIB_MDM2_domain
IPR019835	SWIB_domain

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh19G005790.1	CmoCh19G005790.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003121	SWIB/MDM2 domain	GENE3D	G3DSA:1.10.245.10		coord: 56..126 score: 5.9
IPR003121	SWIB/MDM2 domain	PFAM	PF02201	SWIB	coord: 64..126 score: 1.7
IPR003121	SWIB/MDM2 domain	unknown	SSF47592	SWIB/MDM2 domain	coord: 55..126 score: 1.24
IPR019835	SWIB domain	SMART	SM00151	swib_2	coord: 62..143 score: 2.2
None	No IPR available	PANTHER	PTHR13844	BRG-1 ASSOCIATED FACTOR 60 BAF60	coord: 46..126 score: 3.0
None	No IPR available	PANTHER	PTHR13844:SF8	EXPRESSED PROTEIN	coord: 46..126 score: 3.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh19G005790	Cucsa.219300	Cucumber (Gy14) v1	cgycmoB0627
CmoCh19G005790	CmaCh11G017110	Cucurbita maxima (Rimu)	cmacmoB143
CmoCh19G005790	CmaCh19G005640	Cucurbita maxima (Rimu)	cmacmoB508
CmoCh19G005790	Cla016079	Watermelon (97103) v1	cmowmB496
CmoCh19G005790	Csa7G071540	Cucumber (Chinese Long) v2	cmocuB519
CmoCh19G005790	MELO3C018505	Melon (DHL92) v3.5.1	cmomeB454
CmoCh19G005790	ClCG02G006640	Watermelon (Charleston Gray)	cmowcgB459
CmoCh19G005790	CSPI07G07010	Wild cucumber (PI 183967)	cmocpiB525
CmoCh19G005790	Lsi03G005610	Bottle gourd (USVL1VR-Ls)	cmolsiB468
CmoCh19G005790	Cp4.1LG15g04530	Cucurbita pepo (Zucchini)	cmocpeB481
CmoCh19G005790	Cp4.1LG04g07720	Cucurbita pepo (Zucchini)	cmocpeB494
CmoCh19G005790	MELO3C018505.2	Melon (DHL92) v3.6.1	cmomedB523
CmoCh19G005790	CsaV3_7G007990	Cucumber (Chinese Long) v3	cmocucB0623
CmoCh19G005790	Cla97C02G033620	Watermelon (97103) v2	cmowmbB512
CmoCh19G005790	Bhi05G000883	Wax gourd	cmowgoB0659
CmoCh19G005790	CsGy7G006580	Cucumber (Gy14) v2	cgybcmoB928
CmoCh19G005790	Carg16346	Silver-seed gourd	carcmoB0615
CmoCh19G005790	Carg26995	Silver-seed gourd	carcmoB0268

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh19G005790	CmoCh11G014050	Cucurbita moschata (Rifu)	cmocmoB110

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh19G005790	Cucurbita moschata (Rifu)	cmocmoB395
CmoCh19G005790	Cucurbita maxima (Rimu)	cmacmoB718
CmoCh19G005790	Bottle gourd (USVL1VR-Ls)	cmolsiB469
CmoCh19G005790	Bottle gourd (USVL1VR-Ls)	cmolsiB482
CmoCh19G005790	Cucumber (Gy14) v2	cgybcmoB492
CmoCh19G005790	Melon (DHL92) v3.6.1	cmomedB526
CmoCh19G005790	Melon (DHL92) v3.6.1	cmomedB549
CmoCh19G005790	Silver-seed gourd	carcmoB0512
CmoCh19G005790	Cucumber (Chinese Long) v3	cmocucB0611
CmoCh19G005790	Watermelon (97103) v2	cmowmbB519
CmoCh19G005790	Wax gourd	cmowgoB0642
CmoCh19G005790	Wax gourd	cmowgoB0670