Cp4.1LG04g07720 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG04g07720
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionSWIB domain-containing protein
LocationCp4.1LG04 : 3917138 .. 3919709 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCGCGTTCAGAATTTCGAGCTTCTCGGTCTCACCACTTCACCTTCGCTCTATCCAGTTACCGAGCGCACAGGCACACCCAACACTTCCAGTCGTCAGTTCCGGCCATGGCTTTCGTCTCCACCTTCATCTCCGGCGAACTGTCGCTCCTCACAGTCAGAGCCTCCGCCACCCCCTCCTCCGTCAAGCATCCCTATCAATTCCCTCCGTCTAATTTGCACTTCGCCCGCACTGTTACCTTCGCTTCTACCTCCAACCAGGCCACTGCCTCCCAACGCCAGCCCCGAGGTATCATGAAGCCCAAGCGGATTTCTCCGGAGATGCAGGCGCTTGTCGGTGTTCCCGAGATTTCCCGTACCCAAGCCCTTAAGGTCATTTGGGCTCACATTAAAGAGCATAATCTTCAGGTAGAATTTCTCTTCCTCTGTTGTTTTTCATTTTTCCTTGTCTCTTTATTTCCATGTTTGTTTTCCTTTCACCTCGTCTTCGTCTTTCAGTGATACTAGTTAATTAGAGAATAGGTTTTTCGGTGACCACTTTTAGGGGTTTTTGCTCTGTTCTGAGGATATCGTATGATGTATCGGCTTGCGTGACGAAAGAGTCTTGTTCTGAAATGATGTCTGAAGCCCTCATTTCCGAACAAGACCTTGGATGGTTTGTTTAGAGTTTTCTTACTGTGTTCTGTTTAAAATTTGCTTCGATAATCATTGGATTAATTTCTACGACTCTTAATTCTTCATTTGACGATAGATTAGGGGAGTTTTGTTCCGAGTTATGATGTATTAGCATATGAAAATGTCTTGTTGTCTTTTAAATTTTCATAGAGTGTTCTTGTTGGGCTGCGCTATAATGACCATTGGATGAATTTCTACCACTATTAGTGCATTGTTTTGAAGATGTTTTGGTATTTGGGTAGTAATTCTATAAGATTTGATATCCTTGTTGTTGAGAGTTCTTCTTTTATGAGGGGTTTCAAGATGATTTTGCTGCTTCGGAGTTTCATGGTTAACTTTTTTCTGATTTGTGCATTTGTTTTCAAAGACTAAGAACAGATTTAGCAAAATTTCTGTTCATTCTCTGGTTTTCATTTATCTCTGAAGTTGAATCCACCCATTTTAGTGCAATATTTCTTGAACATAAATACCTTCTCTTTGTGCACTTACCATAGACTCATTCCATAATGTCTGCACAGATTCTTCTACCAGCCTCCACCATTCATTGAGCTCTCTCCTCGTTAGGCATTTCTTCTTATTTGACTCTTCATAAACTCTCCCCAACTCTGTCAACCAATTCTAATTCTTTATTCCTTCCCACATTTCTATCCCTACTTGAGTTCTTCACATAGATTCCGTTTTCTCTAACTTCATAATGTTATAATTATTCCTCTTGAAGCAGTTGTTGGGGTTTCCTCAGCGTGCTTTTCAGCCCTGGCTTTTGTAACTTTAGTTGGCTAAGGATTATGGATTATGGAAACTTTTATATTTTCGTTTAGTCACCGGATAATGGTATTCGCTCATCGGCGGGTTTTTGCTTGTGTTCTAGGGCGGTTCTGAAAAGTTGCTTTCTCCTTCCAATATCTCAATGTTCCCCTAGGAAACAACGGGACCTGGATTTCGAAAAGAAAGAACCTAAAACAGGAACCCTAGTTTGGAAACCCTAAATTGAGTCACGGTCATCATTTTTCGGGCATGTTGGCGATATATACTTTAGTTCCTTGAGTTCTCTTACATTAAATGCTGCCTAATACTTCACAAAGAGACAGAAAATTTGTATGATAGTGGCCTTCTCAGAAATTAGGTGTTCAAAGCACAGAAACCCATAGTCGAGTCGATTTGTTTTGTTTTGTTTTGTTTCTGATTCTATTCTTCATTCTTTTCAATATTTGTTTTGTTTTTTATTGTGCTCATCTTTGTTTTAGAAACCGAGCGACAAAAAAGTCATAATCTGCGACGAGAAGCTGAAGAACATATTCGGAGGGAAAGATGAAGTTGGGTTTCTGGAGATTGCAGGATTGATAAGTCCCCACTTTCTAAAATGATTGGAAGTACGGAAAATAGGGATCTGGGGACCTTCAGTTGACCTTCAGTTGAGTCCATGAAGATGAACTTTGTGTGTGTTGTTTTGTTGTGGAAGTCTCCAAATCCGGTTGATGCGGATGCTTTTAGGTATTATTCCTCACTGAATCCTGGCGTTCAGAGCCCTTTTGTTTGTAGTAGTGGATACAGAGGAAAGCTTTTGTAAGAACTTTGGTTGGAGATTTGTGTAGGGATTATTATATTCAAATCTTTGTTGCTCATTAGTTTGGGAAATCTTTCACTTTTTAATACTACATGCTTACCATTTTGCACTTGGGTTTGCACTTAGCTTCGCCCGATGTGATCGATCAACACGTTGTGGCTACCTATTCTAAACCATTGGAGGTATGATGACACTGTAACTTTTAGTTTCTCTACCCTTAAACTTTTAGGTCTTGAAAATACCTTATTGTTAGTTTTGGATGGAAATCGTTAGTATCGTTTCATAAATACCCTTGAAAGTTCAAGAGTATTTTAACATCGATTAAGGTCAACCAAT

mRNA sequence

GCGCGTTCAGAATTTCGAGCTTCTCGGTCTCACCACTTCACCTTCGCTCTATCCAGTTACCGAGCGCACAGGCACACCCAACACTTCCAGTCGTCAGTTCCGGCCATGGCTTTCGTCTCCACCTTCATCTCCGGCGAACTGTCGCTCCTCACAGTCAGAGCCTCCGCCACCCCCTCCTCCGTCAAGCATCCCTATCAATTCCCTCCGTCTAATTTGCACTTCGCCCGCACTGTTACCTTCGCTTCTACCTCCAACCAGGCCACTGCCTCCCAACGCCAGCCCCGAGGTATCATGAAGCCCAAGCGGATTTCTCCGGAGATGCAGGCGCTTGTCGGTGTTCCCGAGATTTCCCGTACCCAAGCCCTTAAGGTCATTTGGGCTCACATTAAAGAGCATAATCTTCAGAAACCGAGCGACAAAAAAGTCATAATCTGCGACGAGAAGCTGAAGAACATATTCGGAGGGAAAGATGAAGTTGGGTTTCTGGAGATTGCAGGATTGATAAGTCCCCACTTTCTAAAATGATTGGAAGTACGGAAAATAGGGATCTGGGGACCTTCAGTTGACCTTCAGTTGAGTCCATGAAGATGAACTTTGTGTGTGTTGTTTTGTTGTGGAAGTCTCCAAATCCGGTTGATGCGGATGCTTTTAGGTATTATTCCTCACTGAATCCTGGCGTTCAGAGCCCTTTTGTTTGTAGTAGTGGATACAGAGGAAAGCTTTTGTAAGAACTTTGGTTGGAGATTTGTGTAGGGATTATTATATTCAAATCTTTGTTGCTCATTAGTTTGGGAAATCTTTCACTTTTTAATACTACATGCTTACCATTTTGCACTTGGGTTTGCACTTAGCTTCGCCCGATGTGATCGATCAACACGTTGTGGCTACCTATTCTAAACCATTGGAGGTATGATGACACTGTAACTTTTAGTTTCTCTACCCTTAAACTTTTAGGTCTTGAAAATACCTTATTGTTAGTTTTGGATGGAAATCGTTAGTATCGTTTCATAAATACCCTTGAAAGTTCAAGAGTATTTTAACATCGATTAAGGTCAACCAAT

Coding sequence (CDS)

ATGGCTTTCGTCTCCACCTTCATCTCCGGCGAACTGTCGCTCCTCACAGTCAGAGCCTCCGCCACCCCCTCCTCCGTCAAGCATCCCTATCAATTCCCTCCGTCTAATTTGCACTTCGCCCGCACTGTTACCTTCGCTTCTACCTCCAACCAGGCCACTGCCTCCCAACGCCAGCCCCGAGGTATCATGAAGCCCAAGCGGATTTCTCCGGAGATGCAGGCGCTTGTCGGTGTTCCCGAGATTTCCCGTACCCAAGCCCTTAAGGTCATTTGGGCTCACATTAAAGAGCATAATCTTCAGAAACCGAGCGACAAAAAAGTCATAATCTGCGACGAGAAGCTGAAGAACATATTCGGAGGGAAAGATGAAGTTGGGTTTCTGGAGATTGCAGGATTGATAAGTCCCCACTTTCTAAAATGA

Protein sequence

MAFVSTFISGELSLLTVRASATPSSVKHPYQFPPSNLHFARTVTFASTSNQATASQRQPRGIMKPKRISPEMQALVGVPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFLK
Homology
[Close]
BLAST of Cp4.1LG04g07720 vs. Swiss-Prot
Match: UAF30_SCHPO (Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=spp27 PE=1 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.1e-10
Identity = 25/55 (45.45%), Postives = 43/55 (78.18%), Query Frame = 1 

Query: 64  KPKRISPEMQALVGVPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIF 119
           KP ++SP++   +G+ ++SR Q +K +W +IK H+LQ P+DK+ I+CD+KLK++F
Sbjct: 119 KPMKLSPKLAEFLGLEQLSRPQTVKKLWEYIKAHDLQDPNDKRTILCDDKLKSVF 173

[Close]
BLAST of Cp4.1LG04g07720 vs. Swiss-Prot
Match: TRI1_YEAST (Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRI1 PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 9.1e-10
Identity = 27/54 (50.00%), Postives = 40/54 (74.07%), Query Frame = 1 

Query: 68  ISPEMQALVGVPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFGGK 122
           +S  +Q  +G  E+ RTQ +K+IW +IKEH+LQ P D++ I+CDEK++ IFG K
Sbjct: 126 LSAPLQKFLGSEELPRTQVVKMIWQYIKEHDLQNPKDRREILCDEKMEPIFGKK 179

[Close]
BLAST of Cp4.1LG04g07720 vs. Swiss-Prot
Match: UAF30_YEAST (Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UAF30 PE=1 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.3e-08
Identity = 25/52 (48.08%), Postives = 40/52 (76.92%), Query Frame = 1 

Query: 68  ISPEMQALVGVPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFG 120
           +S  + +L+G  E++RT+ ++ +WA+IK HNLQ P++KK I+CDEKL+ I G
Sbjct: 126 LSKSLASLLGEHELTRTEVVRRLWAYIKAHNLQNPNNKKEILCDEKLELILG 177

[Close]
BLAST of Cp4.1LG04g07720 vs. Swiss-Prot
Match: C3H19_ARATH (Zinc finger CCCH domain-containing protein 19 OS=Arabidopsis thaliana GN=NERD PE=1 SV=3)

HSP 1 Score: 51.6 bits (122), Expect = 8.0e-06
Identity = 23/51 (45.10%), Postives = 34/51 (66.67%), Query Frame = 1 

Query: 89  VIWAHIKEHNLQKPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFLK 140
           ++ A+IK +NL+ P  K  +ICD +L+N+F GK  VG  E+  L+  HFLK
Sbjct: 835 LLLAYIKRYNLRDPRRKSQVICDSRLQNLF-GKSHVGHFEMLNLLDSHFLK 884

[Close]
BLAST of Cp4.1LG04g07720 vs. TrEMBL
Match: A0A0A0K2G6_CUCSA (Brg-1 associated factor OS=Cucumis sativus GN=Csa_7G071540 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 1.5e-46
Identity = 103/140 (73.57%), Postives = 116/140 (82.86%), Query Frame = 1 

Query: 1   MAFVSTFISGELSLLTVRASATPSS--VKHPYQFPPSNLHFARTVTFASTSNQATASQRQ 60
           MAF+STFI+ + SLL V+ S T SS  +KH  Q P  +L F RTVTFA  S QATA  R+
Sbjct: 1   MAFLSTFIAVKPSLLVVKPSPTTSSSNLKHLNQLPLPDLRFPRTVTFALASKQATAPSRE 60

Query: 61  PRGIMKPKRISPEMQALVGVPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIF 120
           PRGI KP++ISPE+QALVG PEISRTQALKVIWA+IKE+NLQKPS+KKVI CDEKLK IF
Sbjct: 61  PRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSNKKVIACDEKLKKIF 120

Query: 121 GGKDEVGFLEIAGLISPHFL 139
           GGKDEVGFLEIAGLISPHFL
Sbjct: 121 GGKDEVGFLEIAGLISPHFL 140

[Close]
BLAST of Cp4.1LG04g07720 vs. TrEMBL
Match: V4UA08_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029545mg PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 7.7e-40
Identity = 87/136 (63.97%), Postives = 102/136 (75.00%), Query Frame = 1 

Query: 3   FVSTFISGELSLLTVRASATPSSVKHPYQFPPSNLHFARTVTFASTSNQATASQRQPRGI 62
           F +TF+S E    T  +   PSS   P QF P +L   RTVT A+ S +    +R+PRGI
Sbjct: 8   FTTTFLSPE----TASSFLKPSSSGKPGQFSPVHLRTVRTVTLATASPKPVTGKREPRGI 67

Query: 63  MKPKRISPEMQALVGVPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFGGKD 122
           MKP+R+SPEM+A VG PEI RTQALK+IWAHIK+HNLQ P +KKVIICDEKLK IFGG+D
Sbjct: 68  MKPRRVSPEMEAFVGAPEIPRTQALKLIWAHIKQHNLQDPENKKVIICDEKLKKIFGGRD 127

Query: 123 EVGFLEIAGLISPHFL 139
            VGFLEIAGLISPHFL
Sbjct: 128 RVGFLEIAGLISPHFL 139

[Close]
BLAST of Cp4.1LG04g07720 vs. TrEMBL
Match: M5VLL6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013038mg PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 2.5e-38
Identity = 84/135 (62.22%), Postives = 106/135 (78.52%), Query Frame = 1 

Query: 5   STFISGELSLL-TVRASATPSSVKHPYQFPPSNLHFARTVTFASTSNQATASQRQPRGIM 64
           STF+SGE S       S++ SS++ P+   P+NL   R  T A+ S  AT + RQPRGIM
Sbjct: 10  STFLSGETSSFPNTSFSSSSSSLRFPHPNFPANLRMVRIPTLATASKPAT-TPRQPRGIM 69

Query: 65  KPKRISPEMQALVGVPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFGGKDE 124
           KP+++SPEMQALVG PEISRTQALK+IWAHIK++NLQ P +K++I+CDEKLK IF GKD+
Sbjct: 70  KPRKVSPEMQALVGTPEISRTQALKLIWAHIKQNNLQDPQNKRIIVCDEKLKKIFAGKDQ 129

Query: 125 VGFLEIAGLISPHFL 139
           VGFLE+AGLI+PHFL
Sbjct: 130 VGFLEVAGLITPHFL 143

[Close]
BLAST of Cp4.1LG04g07720 vs. TrEMBL
Match: F6H677_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0091g00430 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 6.1e-37
Identity = 84/141 (59.57%), Postives = 103/141 (73.05%), Query Frame = 1 

Query: 1   MAFVSTFISGELSLLTVRASATPSSVKHPYQFPPSNLHFARTVTFASTSNQATAS--QRQ 60
           +  +STF SGE +  +  A +  S    P   P +NL   RTVT A+ S    A+  +R+
Sbjct: 5   LGVISTFFSGETASFSKSALSLTSLRHLPPPSPHTNLRLVRTVTSAAASKPPAAATGKRE 64

Query: 61  PRGIMKPKRISPEMQALVGVPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIF 120
           PRGIMKP+RISPEMQ  +GVPEI RTQALK IWA+IK+HNLQ P +KK+I+CDEKLK+IF
Sbjct: 65  PRGIMKPRRISPEMQDFLGVPEIPRTQALKQIWAYIKQHNLQDPENKKIIVCDEKLKSIF 124

Query: 121 GGKDEVGFLEIAGLISPHFLK 140
            GKD VGFLEIAGLI+PHFLK
Sbjct: 125 AGKDRVGFLEIAGLINPHFLK 145

[Close]
BLAST of Cp4.1LG04g07720 vs. TrEMBL
Match: A0A0B0NPQ8_GOSAR (Protein TRI1 OS=Gossypium arboreum GN=F383_01511 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 6.1e-37
Identity = 86/137 (62.77%), Postives = 100/137 (72.99%), Query Frame = 1 

Query: 2   AFVSTFISGELSLLTVRASATPSSVKHPYQFPPSNLHFARTVTFASTSNQATASQRQPRG 61
           AF+STFIS +        S +P S       PP+N+   RTVT A+ S  AT   R PRG
Sbjct: 6   AFLSTFISPQT------VSFSPKSFSSLSLLPPTNVRTVRTVTLATASQPATGP-RTPRG 65

Query: 62  IMKPKRISPEMQALVGVPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFGGK 121
           IMKP+R++PEMQ +VGVPEI RTQALK IWA+IKEHNLQ P +KK+I CDEKLK IFGGK
Sbjct: 66  IMKPRRVTPEMQDVVGVPEIPRTQALKQIWAYIKEHNLQDPENKKIINCDEKLKKIFGGK 125

Query: 122 DEVGFLEIAGLISPHFL 139
           D +GFLEIAGLISPHFL
Sbjct: 126 DRIGFLEIAGLISPHFL 135

[Close]
BLAST of Cp4.1LG04g07720 vs. TAIR10
Match: AT2G14880.1 (AT2G14880.1 SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 136.0 bits (341), Expect = 1.8e-32
Identity = 74/135 (54.81%), Postives = 95/135 (70.37%), Query Frame = 1 

Query: 5   STFISGELSLLTVRASATPSSVKHPYQFPPSNLHFARTVTFASTSNQATAS-QRQPRGIM 64
           STF+   +   + R  +TP S       P + L   R VT A+ S++ TA+ +R PRGIM
Sbjct: 9   STFLC--IKTTSFRNPSTPLSSLRFASHPAAKLRLVRAVTSATESSEPTATNKRVPRGIM 68

Query: 65  KPKRISPEMQALVGVPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFGGKDE 124
           KP+ +SPEMQ +V +PEI+RTQALK IWA+IKEH+LQ P +K+ I+CDEKLK IF G+D 
Sbjct: 69  KPRPVSPEMQDIVELPEIARTQALKRIWAYIKEHDLQDPQNKREILCDEKLKKIFEGRDR 128

Query: 125 VGFLEIAGLISPHFL 139
           VGFLEIA LI PHFL
Sbjct: 129 VGFLEIAKLIGPHFL 141

[Close]
BLAST of Cp4.1LG04g07720 vs. TAIR10
Match: AT4G34290.1 (AT4G34290.1 SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 129.8 bits (325), Expect = 1.3e-30
Identity = 73/139 (52.52%), Postives = 95/139 (68.35%), Query Frame = 1 

Query: 3   FVSTFISGELSLLTVRASATPSSVKHPYQFPPSNLHFARTVTFASTSNQ---ATASQRQP 62
           F +TF+  + + L   +  +PSS++     P +NL   R VT A+ ++     T   R+P
Sbjct: 8   FSTTFLCVDTAPLR-SSMLSPSSLRLSPNHP-TNLRMVRAVTSAAAASSDPTTTTKTREP 67

Query: 63  RGIMKPKRISPEMQALVGVPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFG 122
           RGIMKP+ +S  MQ +VGVPEI RTQALK IWA+IKEH+LQ P +K+ I+CDEKLK IF 
Sbjct: 68  RGIMKPRPVSQAMQDVVGVPEIPRTQALKRIWAYIKEHDLQDPQNKRDILCDEKLKKIFE 127

Query: 123 GKDEVGFLEIAGLISPHFL 139
           GK+ VGFLEIA LI PHFL
Sbjct: 128 GKERVGFLEIAKLIGPHFL 144

[Close]
BLAST of Cp4.1LG04g07720 vs. TAIR10
Match: AT3G03590.1 (AT3G03590.1 SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 97.1 bits (240), Expect = 9.4e-21
Identity = 60/135 (44.44%), Postives = 78/135 (57.78%), Query Frame = 1 

Query: 10  GELSLLTVRASATPS-----SVKHPYQFPPSNLHFARTVTFASTSNQATASQRQPRGIMK 69
           G  SLL   + AT S     S K P   P +    A+    A + + A  + R   GI K
Sbjct: 11  GARSLLAPASRATSSLVSAGSTKKPAAKPKAK---AKPKPKAKSDSPAKKTPRST-GIFK 70

Query: 70  PKRISPEMQALVGVPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFGGKDEV 129
              +SP +   +G  E SRT A+K IW +IK H+LQ P+DK+ I CDE LK IF GKD+V
Sbjct: 71  VTPVSPVLAQFLGTGETSRTDAIKGIWTYIKSHDLQNPADKREIFCDETLKLIFEGKDKV 130

Query: 130 GFLEIAGLISPHFLK 140
           GFLEI+ L+SPHF+K
Sbjct: 131 GFLEISKLLSPHFVK 141

[Close]
BLAST of Cp4.1LG04g07720 vs. TAIR10
Match: AT2G35605.1 (AT2G35605.1 SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 90.9 bits (224), Expect = 6.7e-19
Identity = 46/99 (46.46%), Postives = 64/99 (64.65%), Query Frame = 1 

Query: 41  RTVTFASTSNQATASQRQPRGIMKPKRISPEMQALVGVPEISRTQALKVIWAHIKEHNLQ 100
           R +   + S+    + RQ  GI+K   +S  +   +G  E+SRT A+K IW +IK +NLQ
Sbjct: 9   RVLMAKAASSTGAKTGRQGTGILKVVPVSKPLANFIGENEVSRTTAVKKIWEYIKLNNLQ 68

Query: 101 KPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFLK 140
            P +K+ I+CDE+LK IF GKD VGFLEI+ L+S HF K
Sbjct: 69  NPVNKREILCDEQLKTIFSGKDTVGFLEISKLLSQHFPK 107

[Close]
BLAST of Cp4.1LG04g07720 vs. TAIR10
Match: AT1G31760.1 (AT1G31760.1 SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 90.5 bits (223), Expect = 8.8e-19
Identity = 43/99 (43.43%), Postives = 64/99 (64.65%), Query Frame = 1 

Query: 41  RTVTFASTSNQATASQRQPRGIMKPKRISPEMQALVGVPEISRTQALKVIWAHIKEHNLQ 100
           RT+   + + +A     + +GI K + +S ++ +  G  E++R  ALK +W ++K HNLQ
Sbjct: 12  RTLMSKAATVEAVTVAGEGKGIFKTRPVSQQLASFAGERELTRGSALKKVWEYVKLHNLQ 71

Query: 101 KPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFLK 140
            P++KK I CD+KLK IF GKD+VG  EI  L+SPHF K
Sbjct: 72  NPANKKEIHCDDKLKTIFDGKDKVGITEIMKLLSPHFPK 110

[Close]
BLAST of Cp4.1LG04g07720 vs. NCBI nr
Match: gi|659110045|ref|XP_008455019.1| (PREDICTED: uncharacterized protein LOC103495293 [Cucumis melo])

HSP 1 Score: 201.1 bits (510), Expect = 1.3e-48
Identity = 106/143 (74.13%), Postives = 120/143 (83.92%), Query Frame = 1 

Query: 1   MAFVSTFISGELSLLTVRASATPSS-----VKHPYQFPPSNLHFARTVTFASTSNQATAS 60
           MAF+STFI+ + SLL V+ S T SS     +KH  Q P  +L F RTVTFA  SNQATA 
Sbjct: 1   MAFLSTFIAVKPSLLVVKPSPTTSSSSSSSLKHLNQLPLPDLRFPRTVTFAFASNQATAP 60

Query: 61  QRQPRGIMKPKRISPEMQALVGVPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLK 120
           +R+PRGI KP++ISPE+QALVG PEISRTQALKVIWA+IKE+NLQKPSDKKVI+CDEKLK
Sbjct: 61  RREPRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSDKKVIVCDEKLK 120

Query: 121 NIFGGKDEVGFLEIAGLISPHFL 139
           NIFGGKDEVGFLEIAGLISPHFL
Sbjct: 121 NIFGGKDEVGFLEIAGLISPHFL 143

[Close]
BLAST of Cp4.1LG04g07720 vs. NCBI nr
Match: gi|449438339|ref|XP_004136946.1| (PREDICTED: uncharacterized protein LOC101217337 [Cucumis sativus])

HSP 1 Score: 193.7 bits (491), Expect = 2.1e-46
Identity = 103/140 (73.57%), Postives = 116/140 (82.86%), Query Frame = 1 

Query: 1   MAFVSTFISGELSLLTVRASATPSS--VKHPYQFPPSNLHFARTVTFASTSNQATASQRQ 60
           MAF+STFI+ + SLL V+ S T SS  +KH  Q P  +L F RTVTFA  S QATA  R+
Sbjct: 1   MAFLSTFIAVKPSLLVVKPSPTTSSSNLKHLNQLPLPDLRFPRTVTFALASKQATAPSRE 60

Query: 61  PRGIMKPKRISPEMQALVGVPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIF 120
           PRGI KP++ISPE+QALVG PEISRTQALKVIWA+IKE+NLQKPS+KKVI CDEKLK IF
Sbjct: 61  PRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSNKKVIACDEKLKKIF 120

Query: 121 GGKDEVGFLEIAGLISPHFL 139
           GGKDEVGFLEIAGLISPHFL
Sbjct: 121 GGKDEVGFLEIAGLISPHFL 140

[Close]
BLAST of Cp4.1LG04g07720 vs. NCBI nr
Match: gi|567860420|ref|XP_006422864.1| (hypothetical protein CICLE_v10029545mg [Citrus clementina])

HSP 1 Score: 171.4 bits (433), Expect = 1.1e-39
Identity = 87/136 (63.97%), Postives = 102/136 (75.00%), Query Frame = 1 

Query: 3   FVSTFISGELSLLTVRASATPSSVKHPYQFPPSNLHFARTVTFASTSNQATASQRQPRGI 62
           F +TF+S E    T  +   PSS   P QF P +L   RTVT A+ S +    +R+PRGI
Sbjct: 8   FTTTFLSPE----TASSFLKPSSSGKPGQFSPVHLRTVRTVTLATASPKPVTGKREPRGI 67

Query: 63  MKPKRISPEMQALVGVPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFGGKD 122
           MKP+R+SPEM+A VG PEI RTQALK+IWAHIK+HNLQ P +KKVIICDEKLK IFGG+D
Sbjct: 68  MKPRRVSPEMEAFVGAPEIPRTQALKLIWAHIKQHNLQDPENKKVIICDEKLKKIFGGRD 127

Query: 123 EVGFLEIAGLISPHFL 139
            VGFLEIAGLISPHFL
Sbjct: 128 RVGFLEIAGLISPHFL 139

[Close]
BLAST of Cp4.1LG04g07720 vs. NCBI nr
Match: gi|595793657|ref|XP_007200577.1| (hypothetical protein PRUPE_ppa013038mg [Prunus persica])

HSP 1 Score: 166.4 bits (420), Expect = 3.6e-38
Identity = 84/135 (62.22%), Postives = 106/135 (78.52%), Query Frame = 1 

Query: 5   STFISGELSLL-TVRASATPSSVKHPYQFPPSNLHFARTVTFASTSNQATASQRQPRGIM 64
           STF+SGE S       S++ SS++ P+   P+NL   R  T A+ S  AT + RQPRGIM
Sbjct: 10  STFLSGETSSFPNTSFSSSSSSLRFPHPNFPANLRMVRIPTLATASKPAT-TPRQPRGIM 69

Query: 65  KPKRISPEMQALVGVPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFGGKDE 124
           KP+++SPEMQALVG PEISRTQALK+IWAHIK++NLQ P +K++I+CDEKLK IF GKD+
Sbjct: 70  KPRKVSPEMQALVGTPEISRTQALKLIWAHIKQNNLQDPQNKRIIVCDEKLKKIFAGKDQ 129

Query: 125 VGFLEIAGLISPHFL 139
           VGFLE+AGLI+PHFL
Sbjct: 130 VGFLEVAGLITPHFL 143

[Close]
BLAST of Cp4.1LG04g07720 vs. NCBI nr
Match: gi|658057342|ref|XP_008364448.1| (PREDICTED: uncharacterized protein LOC103428126 [Malus domestica])

HSP 1 Score: 166.0 bits (419), Expect = 4.7e-38
Identity = 83/134 (61.94%), Postives = 101/134 (75.37%), Query Frame = 1 

Query: 5   STFISGELSLLTVRASATPSSVKHPYQFPPSNLHFARTVTFASTSNQATASQRQPRGIMK 64
           STF SGE S       ++PSS     +F P+NL   R  T A+ S  AT + R+PRGIMK
Sbjct: 13  STFFSGETSSFISPPFSSPSS---SLRFAPANLRMVRIPTLATASKPATTTPREPRGIMK 72

Query: 65  PKRISPEMQALVGVPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFGGKDEV 124
           P+++SPEMQALVG PEISRTQALK IWAHIK++NLQ P +K++I+CDEKLK IF GKD V
Sbjct: 73  PRKVSPEMQALVGAPEISRTQALKQIWAHIKQNNLQDPQNKRIIVCDEKLKKIFAGKDRV 132

Query: 125 GFLEIAGLISPHFL 139
           GFLE+AGLI+PHFL
Sbjct: 133 GFLEVAGLITPHFL 143

The following BLAST results are available for this feature:
BLAST of Cp4.1LG04g07720 vs. Swiss-Prot
Match NameE-valueIdentityDescription
UAF30_SCHPO3.1e-1045.45Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 97... [more]
TRI1_YEAST9.1e-1050.00Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRI1 PE... [more]
UAF30_YEAST2.3e-0848.08Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATC... [more]
C3H19_ARATH8.0e-0645.10Zinc finger CCCH domain-containing protein 19 OS=Arabidopsis thaliana GN=NERD PE... [more]
BLAST of Cp4.1LG04g07720 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K2G6_CUCSA1.5e-4673.57Brg-1 associated factor OS=Cucumis sativus GN=Csa_7G071540 PE=4 SV=1[more]
V4UA08_9ROSI7.7e-4063.97Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029545mg PE=4 SV=1[more]
M5VLL6_PRUPE2.5e-3862.22Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013038mg PE=4 SV=1[more]
F6H677_VITVI6.1e-3759.57Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0091g00430 PE=4 SV=... [more]
A0A0B0NPQ8_GOSAR6.1e-3762.77Protein TRI1 OS=Gossypium arboreum GN=F383_01511 PE=4 SV=1[more]
BLAST of Cp4.1LG04g07720 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G14880.11.8e-3254.81 SWIB/MDM2 domain superfamily protein[more]
AT4G34290.11.3e-3052.52 SWIB/MDM2 domain superfamily protein[more]
AT3G03590.19.4e-2144.44 SWIB/MDM2 domain superfamily protein[more]
AT2G35605.16.7e-1946.46 SWIB/MDM2 domain superfamily protein[more]
AT1G31760.18.8e-1943.43 SWIB/MDM2 domain superfamily protein[more]
BLAST of Cp4.1LG04g07720 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659110045|ref|XP_008455019.1|1.3e-4874.13PREDICTED: uncharacterized protein LOC103495293 [Cucumis melo][more]
gi|449438339|ref|XP_004136946.1|2.1e-4673.57PREDICTED: uncharacterized protein LOC101217337 [Cucumis sativus][more]
gi|567860420|ref|XP_006422864.1|1.1e-3963.97hypothetical protein CICLE_v10029545mg [Citrus clementina][more]
gi|595793657|ref|XP_007200577.1|3.6e-3862.22hypothetical protein PRUPE_ppa013038mg [Prunus persica][more]
gi|658057342|ref|XP_008364448.1|4.7e-3861.94PREDICTED: uncharacterized protein LOC103428126 [Malus domestica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR019835SWIB_domain
IPR003121SWIB_MDM2_domain
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG04g07720.1Cp4.1LG04g07720.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003121SWIB/MDM2 domainGENE3DG3DSA:1.10.245.10coord: 55..139
score: 1.0
IPR003121SWIB/MDM2 domainPFAMPF02201SWIBcoord: 65..137
score: 1.8
IPR003121SWIB/MDM2 domainunknownSSF47592SWIB/MDM2 domaincoord: 56..139
score: 1.0
IPR019835SWIB domainSMARTSM00151swib_2coord: 62..139
score: 2.8
NoneNo IPR availablePANTHERPTHR13844BRG-1 ASSOCIATED FACTOR 60 BAF60coord: 46..139
score: 2.5
NoneNo IPR availablePANTHERPTHR13844:SF8EXPRESSED PROTEINcoord: 46..139
score: 2.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG04g07720Cucsa.219300Cucumber (Gy14) v1cgycpeB0602
Cp4.1LG04g07720CmaCh11G017110Cucurbita maxima (Rimu)cmacpeB154
Cp4.1LG04g07720CmaCh19G005640Cucurbita maxima (Rimu)cmacpeB539
Cp4.1LG04g07720CmoCh19G005790Cucurbita moschata (Rifu)cmocpeB494
Cp4.1LG04g07720CmoCh11G014050Cucurbita moschata (Rifu)cmocpeB126
Cp4.1LG04g07720Cla016079Watermelon (97103) v1cpewmB665
Cp4.1LG04g07720Csa7G071540Cucumber (Chinese Long) v2cpecuB695
Cp4.1LG04g07720MELO3C018505Melon (DHL92) v3.5.1cpemeB604
Cp4.1LG04g07720ClCG02G006640Watermelon (Charleston Gray)cpewcgB590
Cp4.1LG04g07720CSPI07G07010Wild cucumber (PI 183967)cpecpiB697
Cp4.1LG04g07720Lsi03G005610Bottle gourd (USVL1VR-Ls)cpelsiB543
Cp4.1LG04g07720MELO3C018505.2Melon (DHL92) v3.6.1cpemedB715
Cp4.1LG04g07720CsaV3_7G007990Cucumber (Chinese Long) v3cpecucB0868
Cp4.1LG04g07720Bhi05G000883Wax gourdcpewgoB0847
Cp4.1LG04g07720CsGy7G006580Cucumber (Gy14) v2cgybcpeB969
Cp4.1LG04g07720Carg16346Silver-seed gourdcarcpeB0639
Cp4.1LG04g07720Carg26995Silver-seed gourdcarcpeB0272
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG04g07720Cp4.1LG15g04530Cucurbita pepo (Zucchini)cpecpeB269
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG04g07720Cucurbita maxima (Rimu)cmacpeB749
Cp4.1LG04g07720Cucurbita moschata (Rifu)cmocpeB321
Cp4.1LG04g07720Cucurbita moschata (Rifu)cmocpeB703
Cp4.1LG04g07720Bottle gourd (USVL1VR-Ls)cpelsiB552
Cp4.1LG04g07720Watermelon (Charleston Gray)cpewcgB624
Cp4.1LG04g07720Cucumber (Gy14) v2cgybcpeB237
Cp4.1LG04g07720Melon (DHL92) v3.6.1cpemedB746
Cp4.1LG04g07720Melon (DHL92) v3.6.1cpemedB771
Cp4.1LG04g07720Silver-seed gourdcarcpeB0266
Cp4.1LG04g07720Silver-seed gourdcarcpeB0409
Cp4.1LG04g07720Silver-seed gourdcarcpeB0529
Cp4.1LG04g07720Cucumber (Chinese Long) v3cpecucB0834
Cp4.1LG04g07720Cucumber (Chinese Long) v3cpecucB0847
Cp4.1LG04g07720Wax gourdcpewgoB0845
Cp4.1LG04g07720Wax gourdcpewgoB0860
Cp4.1LG04g07720Wax gourdcpewgoB0879
Cp4.1LG04g07720Cucurbita pepo (Zucchini)cpecpeB133
Cp4.1LG04g07720Cucurbita pepo (Zucchini)cpecpeB400
Cp4.1LG04g07720Cucurbita pepo (Zucchini)cpecpeB497
Cp4.1LG04g07720Cucurbita pepo (Zucchini)cpecpeB500