Bhi05G000883 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi05G000883
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	upstream activation factor subunit spp27-like
Location	chr5 : 36698250 .. 36703319 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTCGAGCTTCTCGAGTTATCGGTCTTACCGCTTCACCTTCTTCGCTTTATCCATTTTTCGAACGCACTCACAACCTATCGTCCCTTCCGGCCATGGCTTTCCTCTCCACCTTCATCTCCGGCGAACCGTCGCTCCTCGTCGTCAAAGCCTCCGCCACCGCCACTTCCGTCAAGCAACCTTATCAACTCCCTCTCCCTAATTTGCGCTTCGCCCGCACCGTTACCTTTGCTTCCGCCTCCAACCAGGCCACTGCCTCCCACCGGCAGCCCCGTGGCATCATGAAGCCCCGGAGAATTTCACCGGAGATGCAAGCGCTTGTCGGCGCTCCTGAGATATCCCGTACCCAAGCCCTTAAAGTCATTTGGGCTCACATTAAAGAACATAATCTTCAGGTAGAATCCCTCTTCCTCTGTTGTTTTTCGTCTTTCTTTTTCTTTCCTTTCCCTTCTTTCGTCTGTTGGTGTTACTAGTTAATTAGAGAATAGGCTTTTCTGTGATGTGTTTTTTTTTTCTTTCAGTGGAGTTGCAGTTTTATGGGATTTTTTTTTCTTTTTTAGTCTGAGAAGATTTTTTGATGTATCGAGTCCAAAACTTCATTTCAGAACAAGACATTGGATGTTGGTTTTTAGAATTTTCTCACTGTGTTCTTTCTGGAATTATCTTCAACTCTTTGAAGAAAGTTTTGATGTATGTGGTTTTTTTTTTTTTTTTTGAATTAGTGGAGTTTGTATGCTTAAGGGATTTTTGCTCTGAGTTGTTGGGTTATGAGGAGGTTGTAAGATGTATTGGCATGGACTGAAAATGTATTGTTCTGAAATGAGGGTTTTGGATTGTTGGTTTTTAAAATTTTCTGACTGTGTTCTTGTTTGAATGCGCATTTATCATCATTGGATGAATTTTTTTTAACAACTCTTAATGTATTATTTTGAAGAGGGTTTAGATGTGGCATGTGGGTAGTAATTCTTTTAGCTTATTTGACATCCTCGTTATTGAGTTTGAGGCTTGTAAGATGTTTGAAGAGCTTTTGCTGTTCTTGGTTTCCTAGTTAACTCTTTTCAGATTTGTGCATTTGTTTTCAAAGACTTGGAACAGTTCTAGAAAAATTTATGCTCATTTTATAGTATTCAATTATCTCAAAGTTTGAATCCATCCATTTTAGTGCTGTTTTATGATTATAAATACCTTATGTTTTGATAAGATATACATATTCTAAAAATTGGCAGAAGGTTCTAATTATACTATTATAGTATCACTTTGTCTACTCACCATACACTCTCATTGCATAGTTTTTACACAAGTTCCTGTACAAGCTTTATCATTCTCTCTTTACTTTCTTAGTCTCTCTATTTCTCTCTCTAGGCATTTCTTCTTATTTGCTCTCATCATAAACTCTCTCCCACTTTCTTAACCAATTCTATTTCTCTAAAACTCGCTCACCATTCTTTATTCCTTAGCATATTTCTATCCCCAATTGGCTCCATATACATTTACTTTACCCTCTAACTCCATAATGTTATAATATTTCTTCCTGGAACAGTTGTTTGGGGTTTCCTTTTCCTTGGCACGTTTATCAACCTTGCTTTTGTGACTTTTTTTTTTTTTAGTACACGGGAGGTATAGGGGGATTTGAATCACTGACCTCGTGAGGTTACTAACACATTTATATGTCAATTGAGCTATGTTTGGTTTGGCCCTGCTTTTGTGACTTTGTTAACTAAGATTATGGAAACTCTATGTTTTTAGTCTTGTCATGTATGTTGGTGATATATACTGTAGTTCCTGGAATTTTCGTACAATAGTTGTTCTTTCTTTGGCTAAATACTGCCTAGTGTTTTATCTCCCCCCCCCCCAAAAAAAAAAAAAAAAAAAAAGAAGATAGTTTGCTTCTTAGAAATCAGTGGTTCGAAGCACAGAAACCCGGAGTCGAGTCTATTTGTTTTGTTTCTAAAAATTATATTCTTCATTTTTTTAGAAACCTAGCGACAAGAAAGTAATAATTTGCGACGAGAAGCTGAAGAATATATTTGGAGGGAAAGATGAAGTTGGATTTCTGGAGATTGCAGGGTTAATAAGTCCACACTTTTTATAATGATTTGAAGAATGGAAGATAGGCATCTGGGACTTTCAGTTCAGTCCATGAAGGTGAACTTTCTTTTTTTGTTGTGGGAATCTCTCAACTCAGGTATTGCTTACTGAATCCTGTAGTTCAGAGCCCACTTTATGTTTAGTAGTTGGATAGAGAAAAAGAAGGTTTTGTAAGAACTTTGTTTGGAGGTTTATGTAGAGATTGTTATATGGAAATCTTTGTTAGTCATTAGTTTTTGGGTAAAATGTTTTACTTTTGTATTCTACATGCTTGCTTTTTGTGCTTCTATTTGCCCTGGTCTTGATGATTTAGTTGCTAATGAAATTGTATTATTTCAACACCATACATAAAGCTACTTTGTCTTTTCAAATACTAGTTTATCAAAGCAAAATTCACATAATTATTGAATTCAAGCATTGAGATTTTATTATTGTTTTTTAAAAAAGAAATTAAAATTTGGTTCAAATCTTAGGTTAGGTTCCAATACTTTGAGAAGCTCTGTAACCCTGATAGCATGTAAATTGTCATAAATTTATTTTGGATCATTTGGATATATTGGAATTCGAGATTTAAGTAATTTGCTAAATTAGCTCTAATTTCGTTATTTTGAGTTAATCAGAATTAAATTTGGCTTGTGGTTACAATTGGATTATTGTAATCAAGTAATTCAATTTCATTAAGTGGTTAAAGATTTAAAATTATATTGGAGGGAAATTTTAGGAAAAAGATTTGAGGCATTGGGCTTAATTTAATTAGGCCTAATTAGTTGAGGATTTTGAGTTATTTTGGAAGAAGATTGTTTGTTGAGGATATCTTTTATTTTGGACTTGGAATTTAAGGAGGGAAATATGTATATTTTGGAATTTGAAAAGGAAAGAAATTTGGAAAAAAGAGGGAAAAAAAGTAATAACAAAGGGGGAGGAGATTTTGGAATGAAAGAAGGAAAAGGAAAAAAAATGTTATATTTATATTTTAGAGGGTTGGGGTTTTATTTAATGAAAAGAAAGATCTAAAAAGAACGGAAAAGAAATTTTTTTTCCTCTCCTCCCTCTGTTGCACGCGTTGGAATCGTCCAAGACACCTCTCATTTTGCTTAAGAAACCCACGTCGTCGCATGATTCGAGCCACCGGTTTCTCTCCCTCTCTTCTCTGTTTGGTGTAGGGATCCAACAAAGTCGTCGGTCATAGATACCTTGTGTCCCCCTTTGTTCGCGAACTTGTCGTGTCACCCAACACCGTCTCCTCAGTTTCACTGTGGGTTTGCTGTAGAACGGAATCAATGCTCTTTAAACTCTGTCTAGGGTAAGTTTTCCCTTAGTTTTTTTTAAAAGATTCTGGTTGTTAGGTTTAGATGTGTCTAATGGTTGTCTTAAGCTTGGTGTTGGGACGTTAGATTCGATGTTTGATGAGTGTCGAAGCAACTATGCAGTAGCTATCGAGGTGATTGCAACAAGTTTGGGTAAGGATATTTCGGTAAGTTTTGTGGGATTTTCTTAAAGTTGTTGAAAACCCATTAAGATTTGGTAAGAGTTTGGACTGGCCCATAATGTGTTGATGCTTGATTCGATTGTTGGAGTTTTTGAAGCGTTATCCAGCAGGAGTAAAGGTCATTTGGTGAGTTTTGGTTAGGCAACTTGATGACCCAATGTCTTTTAGCTCTATATTTTTTTACACCCATTATATTTTGGATTTTAGATCGAAAATTTTGGGGTGTTGAGTGTCGCGACCCAGCAGCTTAGGAGGATAATACAACGACTATTGGTAAGTAATTAAGATTCTAAACTCATATGGATTGGTAGTTGTGTAGTGTGTTTGGTGTAAATTATTAAAATTTGCTTGTTTGGCCTTACGTCATGTTGATGTCGAGGAATTGAAGGACTCTGATCTGGGCCATGTTTCGTGTTGTATCAAGATATCTCCAAGGATTAATCTGATTTGTTTGAATTAGTTTTCGAATTTTAATCTGAAGGAAGCGTCTTACTACTGGTTCGCCTTCGAACTCGTCGTCCTTACCATATAATAATGATTGGACTGTTTGATTTAATGATATGGATTGTTTGGATTGTTTGATTAAATGATATGGATTGTTTGGACTGTTTGATTTAATGAAATGGATTGTTTTGGCTATGATGTTATGTAAAGATGACTGAGAGCATATTGGTAATTTTTCCTAAGATAAGCAACTGTGATTATAATAAAAAATTTATAAGTGGACTGATGCATGCTAAATATATATATTTATGGTGCATGTTAACCTTTTTATTTGGACGTGGGTACACCTTATGACGGATTGTATGTTCCTTCGGGATACACACCTATGACCGCTTATGTGCACATTTATGATTGATTGTGTACCTTTGGATGTACATCTGTGACCGATGTGTGCTCTTTGGGACACACCTACGACTGTTACCTATGACTGATATGTGCTTTCTTCGGGATCATGTTTATGATTGATGTGTTTCCTTCGGGATCACGTTTATGACTGATATGTGATCCTACGGGTTCACTACGACTGATGTGATATGGTCGTACACCATTGCCTATATGGAATGTTTAACATGTTACCTCGATGGCCCAATAGTGGGTCGCTTATTGAGTATATTTATACTCATCATTTCTTCCTTTATGTTTTTAGGTAACGACAGGAATAAGTCAGTGAGTGACAAATGGAACCCATGACAAAGCCATATGGGGATAGAAGAAATCGCTTTCTTTTAGTCTATGTTTTATTTAGTCTATCATTGTTTTAAAATTTGAATTTAATGTTAGAAAGGATATTTTATTGTTTTGGATATTTTCTTTGAGATTGTTTTTTTTAATGGGACACCGATCAAATGTTTCATTCATTTGATTTAACAGATGATTTAATAATTTGGTTTGAAATAGTTGTCCTTGTCTCCACTAAGTTTTATGCTTTGTTGGTCAAGATGTTTGAATGAAAGTGTGTTG

mRNA sequence

ATTTCGAGCTTCTCGAGTTATCGGTCTTACCGCTTCACCTTCTTCGCTTTATCCATTTTTCGAACGCACTCACAACCTATCGTCCCTTCCGGCCATGGCTTTCCTCTCCACCTTCATCTCCGGCGAACCGTCGCTCCTCGTCGTCAAAGCCTCCGCCACCGCCACTTCCGTCAAGCAACCTTATCAACTCCCTCTCCCTAATTTGCGCTTCGCCCGCACCGTTACCTTTGCTTCCGCCTCCAACCAGGCCACTGCCTCCCACCGGCAGCCCCGTGGCATCATGAAGCCCCGGAGAATTTCACCGGAGATGCAAGCGCTTGTCGGCGCTCCTGAGATATCCCGTACCCAAGCCCTTAAAGTCATTTGGGCTCACATTAAAGAACATAATCTTCAGAAACCTAGCGACAAGAAAGTAATAATTTGCGACGAGAAGCTGAAGAATATATTTGGAGGGAAAGATGAAGTTGGATTTCTGGAGATTGCAGGGTTAATAAGTCCACACTTTTTATAATGATTTGAAGAATGGAAGATAGGCATCTGGGACTTTCAGTTCAGTCCATGAAGGTGAACTTTCTTTTTTTGTTGTGGGAATCTCTCAACTCAGGTAACGACAGGAATAAGTCAGTGAGTGACAAATGGAACCCATGACAAAGCCATATGGGGATAGAAGAAATCGCTTTCTTTTAGTCTATGTTTTATTTAGTCTATCATTGTTTTAAAATTTGAATTTAATGTTAGAAAGGATATTTTATTGTTTTGGATATTTTCTTTGAGATTGTTTTTTTTAATGGGACACCGATCAAATGTTTCATTCATTTGATTTAACAGATGATTTAATAATTTGGTTTGAAATAGTTGTCCTTGTCTCCACTAAGTTTTATGCTTTGTTGGTCAAGATGTTTGAATGAAAGTGTGTTG

Coding sequence (CDS)

ATGGCTTTCCTCTCCACCTTCATCTCCGGCGAACCGTCGCTCCTCGTCGTCAAAGCCTCCGCCACCGCCACTTCCGTCAAGCAACCTTATCAACTCCCTCTCCCTAATTTGCGCTTCGCCCGCACCGTTACCTTTGCTTCCGCCTCCAACCAGGCCACTGCCTCCCACCGGCAGCCCCGTGGCATCATGAAGCCCCGGAGAATTTCACCGGAGATGCAAGCGCTTGTCGGCGCTCCTGAGATATCCCGTACCCAAGCCCTTAAAGTCATTTGGGCTCACATTAAAGAACATAATCTTCAGAAACCTAGCGACAAGAAAGTAATAATTTGCGACGAGAAGCTGAAGAATATATTTGGAGGGAAAGATGAAGTTGGATTTCTGGAGATTGCAGGGTTAATAAGTCCACACTTTTTATAA

Protein sequence

MAFLSTFISGEPSLLVVKASATATSVKQPYQLPLPNLRFARTVTFASASNQATASHRQPRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL

Homology

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BLAST of Bhi05G000883 vs. Swiss-Prot
Match: sp|Q05024|TRI1_YEAST (Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TRI1 PE=1 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.1e-10
Identity = 27/54 (50.00%), Postives = 41/54 (75.93%), Query Frame = 0


Query: 68  ISPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFGGK 122
           +S  +Q  +G+ E+ RTQ +K+IW +IKEH+LQ P D++ I+CDEK++ IFG K
Sbjct: 126 LSAPLQKFLGSEELPRTQVVKMIWQYIKEHDLQNPKDRREILCDEKMEPIFGKK 179

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BLAST of Bhi05G000883 vs. Swiss-Prot
Match: sp|Q08747|UAF30_YEAST (Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=UAF30 PE=1 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.7e-08
Identity = 25/52 (48.08%), Postives = 40/52 (76.92%), Query Frame = 0


Query: 68  ISPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFG 120
           +S  + +L+G  E++RT+ ++ +WA+IK HNLQ P++KK I+CDEKL+ I G
Sbjct: 126 LSKSLASLLGEHELTRTEVVRRLWAYIKAHNLQNPNNKKEILCDEKLELILG 177

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BLAST of Bhi05G000883 vs. Swiss-Prot
Match: sp|O74503|UAF30_SCHPO (Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=spp27 PE=1 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 4.3e-07
Identity = 21/43 (48.84%), Postives = 34/43 (79.07%), Query Frame = 0


Query: 76  VGAPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIF 119
           +G  ++SR Q +K +W +IK H+LQ P+DK+ I+CD+KLK++F
Sbjct: 131 LGLEQLSRPQTVKKLWEYIKAHDLQDPNDKRTILCDDKLKSVF 173

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BLAST of Bhi05G000883 vs. TAIR10
Match: AT2G14880.1 (SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 136.0 bits (341), Expect = 1.8e-32
Identity = 69/107 (64.49%), Postives = 83/107 (77.57%), Query Frame = 0


Query: 33  PLPNLRFARTVTFASASNQATASH-RQPRGIMKPRRISPEMQALVGAPEISRTQALKVIW 92
           P   LR  R VT A+ S++ TA++ R PRGIMKPR +SPEMQ +V  PEI+RTQALK IW
Sbjct: 35  PAAKLRLVRAVTSATESSEPTATNKRVPRGIMKPRPVSPEMQDIVELPEIARTQALKRIW 94

Query: 93  AHIKEHNLQKPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL 139
           A+IKEH+LQ P +K+ I+CDEKLK IF G+D VGFLEIA LI PHFL
Sbjct: 95  AYIKEHDLQDPQNKREILCDEKLKKIFEGRDRVGFLEIAKLIGPHFL 141

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BLAST of Bhi05G000883 vs. TAIR10
Match: AT4G34290.1 (SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 121.3 bits (303), Expect = 4.6e-28
Identity = 70/134 (52.24%), Postives = 83/134 (61.94%), Query Frame = 0


Query: 13  SLLVVKASATATSVKQPYQLPL-----PNLRFARTVT---FASASNQATASHRQPRGIMK 72
           + L V  +   +S+  P  L L      NLR  R VT               R+PRGIMK
Sbjct: 11  TFLCVDTAPLRSSMLSPSSLRLSPNHPTNLRMVRAVTSXXXXXXXXXXXXKTREPRGIMK 70

Query: 73  PRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFGGKDEV 132
           PR +S  MQ +VG PEI RTQALK IWA+IKEH+LQ P +K+ I+CDEKLK IF GK+ V
Sbjct: 71  PRPVSQAMQDVVGVPEIPRTQALKRIWAYIKEHDLQDPQNKRDILCDEKLKKIFEGKERV 130

Query: 133 GFLEIAGLISPHFL 139
           GFLEIA LI PHFL
Sbjct: 131 GFLEIAKLIGPHFL 144

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BLAST of Bhi05G000883 vs. TAIR10
Match: AT3G03590.1 (SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 94.0 bits (232), Expect = 7.9e-20
Identity = 44/78 (56.41%), Postives = 56/78 (71.79%), Query Frame = 0


Query: 61  GIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFGG 120
           GI K   +SP +   +G  E SRT A+K IW +IK H+LQ P+DK+ I CDE LK IF G
Sbjct: 63  GIFKVTPVSPVLAQFLGTGETSRTDAIKGIWTYIKSHDLQNPADKREIFCDETLKLIFEG 122

Query: 121 KDEVGFLEIAGLISPHFL 139
           KD+VGFLEI+ L+SPHF+
Sbjct: 123 KDKVGFLEISKLLSPHFV 140

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BLAST of Bhi05G000883 vs. TAIR10
Match: AT1G31760.1 (SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 92.4 bits (228), Expect = 2.3e-19
Identity = 44/97 (45.36%), Postives = 64/97 (65.98%), Query Frame = 0


Query: 41  RTVTFASASNQATASHRQPRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQ 100
           RT+   +A+ +A     + +GI K R +S ++ +  G  E++R  ALK +W ++K HNLQ
Sbjct: 12  RTLMSKAATVEAVTVAGEGKGIFKTRPVSQQLASFAGERELTRGSALKKVWEYVKLHNLQ 71

Query: 101 KPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHF 138
            P++KK I CD+KLK IF GKD+VG  EI  L+SPHF
Sbjct: 72  NPANKKEIHCDDKLKTIFDGKDKVGITEIMKLLSPHF 108

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BLAST of Bhi05G000883 vs. TAIR10
Match: AT2G35605.1 (SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 91.7 bits (226), Expect = 3.9e-19
Identity = 46/97 (47.42%), Postives = 64/97 (65.98%), Query Frame = 0


Query: 41  RTVTFASASNQATASHRQPRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQ 100
           R +   +AS+    + RQ  GI+K   +S  +   +G  E+SRT A+K IW +IK +NLQ
Sbjct: 9   RVLMAKAASSTGAKTGRQGTGILKVVPVSKPLANFIGENEVSRTTAVKKIWEYIKLNNLQ 68

Query: 101 KPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHF 138
            P +K+ I+CDE+LK IF GKD VGFLEI+ L+S HF
Sbjct: 69  NPVNKREILCDEQLKTIFSGKDTVGFLEISKLLSQHF 105

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BLAST of Bhi05G000883 vs. TrEMBL
Match: tr|A0A1S3C0N2|A0A1S3C0N2_CUCME (SWI/SNF complex component SNF12 homolog OS=Cucumis melo OX=3656 GN=LOC103495293 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 4.2e-52
Identity = 113/143 (79.02%), Postives = 123/143 (86.01%), Query Frame = 0


Query: 1   MAFLSTFISGEPSLLVVKAS-----ATATSVKQPYQLPLPNLRFARTVTFASASNQATAS 60
           MAFLSTFI+ +PSLLVVK S          +K   QLPLP+LRF RTVTFA ASNQATA 
Sbjct: 1   MAFLSTFIAVKPSLLVVKPSXXXXXXXXXXLKHLNQLPLPDLRFPRTVTFAFASNQATAP 60

Query: 61  HRQPRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLK 120
            R+PRGI KPR+ISPE+QALVGAPEISRTQALKVIWA+IKE+NLQKPSDKKVI+CDEKLK
Sbjct: 61  RREPRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSDKKVIVCDEKLK 120

Query: 121 NIFGGKDEVGFLEIAGLISPHFL 139
           NIFGGKDEVGFLEIAGLISPHFL
Sbjct: 121 NIFGGKDEVGFLEIAGLISPHFL 143

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BLAST of Bhi05G000883 vs. TrEMBL
Match: tr|A0A0A0K2G6|A0A0A0K2G6_CUCSA (Brg-1 associated factor OS=Cucumis sativus OX=3659 GN=Csa_7G071540 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 1.6e-51
Identity = 112/140 (80.00%), Postives = 123/140 (87.86%), Query Frame = 0


Query: 1   MAFLSTFISGEPSLLVVKASATATS--VKQPYQLPLPNLRFARTVTFASASNQATASHRQ 60
           MAFLSTFI+ +PSLLVVK S T +S  +K   QLPLP+LRF RTVTFA AS QATA  R+
Sbjct: 1   MAFLSTFIAVKPSLLVVKPSPTTSSSNLKHLNQLPLPDLRFPRTVTFALASKQATAPSRE 60

Query: 61  PRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIF 120
           PRGI KPR+ISPE+QALVGAPEISRTQALKVIWA+IKE+NLQKPS+KKVI CDEKLK IF
Sbjct: 61  PRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSNKKVIACDEKLKKIF 120

Query: 121 GGKDEVGFLEIAGLISPHFL 139
           GGKDEVGFLEIAGLISPHFL
Sbjct: 121 GGKDEVGFLEIAGLISPHFL 140

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BLAST of Bhi05G000883 vs. TrEMBL
Match: tr|A0A2I4H7H1|A0A2I4H7H1_9ROSI (zinc finger CCCH domain-containing protein 44-like OS=Juglans regia OX=51240 GN=LOC109014199 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 8.3e-40
Identity = 90/139 (64.75%), Postives = 109/139 (78.42%), Query Frame = 0


Query: 1   MAFLSTFISGEPSLLVVKASATATS-VKQPYQLPLPNLRFARTVTFASASNQATASHRQP 60
           +   ST +S + + L VK S +++S +  P+Q+P  NLR  RTVT+A+ SN+A    R P
Sbjct: 7   LGLFSTSLSSKTASLTVKPSWSSSSPILHPHQVP-ANLRTVRTVTYATVSNEAPGK-RAP 66

Query: 61  RGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFG 120
           RGIMKPRR+SPEMQ LVG PEISRTQALK IWAHIKEHNLQ P +K++IICDEKLK IFG
Sbjct: 67  RGIMKPRRVSPEMQDLVGVPEISRTQALKQIWAHIKEHNLQDPENKRIIICDEKLKKIFG 126

Query: 121 GKDEVGFLEIAGLISPHFL 139
           GK+ +GFLEIAGLISPHFL
Sbjct: 127 GKERIGFLEIAGLISPHFL 143

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BLAST of Bhi05G000883 vs. TrEMBL
Match: tr|V4UA08|V4UA08_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10029545mg PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 9.2e-39
Identity = 87/136 (63.97%), Postives = 104/136 (76.47%), Query Frame = 0


Query: 3   FLSTFISGEPSLLVVKASATATSVKQPYQLPLPNLRFARTVTFASASNQATASHRQPRGI 62
           F +TF+S E +   +K S++     +P Q    +LR  RTVT A+AS +     R+PRGI
Sbjct: 8   FTTTFLSPETASSFLKPSSSG----KPGQFSPVHLRTVRTVTLATASPKPVTGKREPRGI 67

Query: 63  MKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFGGKD 122
           MKPRR+SPEM+A VGAPEI RTQALK+IWAHIK+HNLQ P +KKVIICDEKLK IFGG+D
Sbjct: 68  MKPRRVSPEMEAFVGAPEIPRTQALKLIWAHIKQHNLQDPENKKVIICDEKLKKIFGGRD 127

Query: 123 EVGFLEIAGLISPHFL 139
            VGFLEIAGLISPHFL
Sbjct: 128 RVGFLEIAGLISPHFL 139

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BLAST of Bhi05G000883 vs. TrEMBL
Match: tr|A0A1R3HUD8|A0A1R3HUD8_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_17060 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 9.2e-39
Identity = 95/138 (68.84%), Postives = 108/138 (78.26%), Query Frame = 0


Query: 2   AFLSTFISGEPSLLVVKASATATSVKQPYQLPLP-NLRFARTVTFASASNQATASHRQPR 61
           A  STFIS  P  +   A ++++SV+    L LP N+R  RTVT A+AS  AT + RQPR
Sbjct: 7   AIFSTFIS--PQTVPFSAKSSSSSVR----LILPTNVRTLRTVTQATASKPATGT-RQPR 66

Query: 62  GIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFGG 121
           GIMKPRR+SPEMQALVG PEISRTQALK IWAHIKEHNLQ P +KK+I+CDEKLK IF G
Sbjct: 67  GIMKPRRVSPEMQALVGVPEISRTQALKQIWAHIKEHNLQDPENKKIIVCDEKLKKIFKG 126

Query: 122 KDEVGFLEIAGLISPHFL 139
           KD VGFLEIAGLISPHFL
Sbjct: 127 KDRVGFLEIAGLISPHFL 137

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BLAST of Bhi05G000883 vs. NCBI nr
Match: XP_022952608.1 (uncharacterized protein LOC111455244 [Cucurbita moschata])

HSP 1 Score: 244.2 bits (622), Expect = 2.6e-61
Identity = 121/138 (87.68%), Postives = 129/138 (93.48%), Query Frame = 0


Query: 1   MAFLSTFISGEPSLLVVKASATATSVKQPYQLPLPNLRFARTVTFASASNQATASHRQPR 60
           MAF+STF+SGEPSLLV +ASA  +SVK PYQLPLPNLRF+RT+TFASASNQ TAS RQPR
Sbjct: 1   MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPR 60

Query: 61  GIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFGG 120
           GIMKPRRISPEMQALVGAPEISRT+ALKVIW HIKEHNLQKPSDKK+IICDEKLK IFGG
Sbjct: 61  GIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIICDEKLKKIFGG 120

Query: 121 KDEVGFLEIAGLISPHFL 139
           KDEVGFLEIAGLIS HFL
Sbjct: 121 KDEVGFLEIAGLISSHFL 138

[Close]

BLAST of Bhi05G000883 vs. NCBI nr
Match: XP_023553864.1 (uncharacterized protein LOC111811315 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 244.2 bits (622), Expect = 2.6e-61
Identity = 121/138 (87.68%), Postives = 129/138 (93.48%), Query Frame = 0


Query: 1   MAFLSTFISGEPSLLVVKASATATSVKQPYQLPLPNLRFARTVTFASASNQATASHRQPR 60
           MAF+STF+SGEPSLLV +ASA  +SVK PYQLPLPNLRF+RT+TFASASNQ TAS RQPR
Sbjct: 1   MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPR 60

Query: 61  GIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFGG 120
           GIMKPRRISPEMQALVGAPEISRTQALKVIW HIKEHNLQKP+DKK+IICDEKLK IFGG
Sbjct: 61  GIMKPRRISPEMQALVGAPEISRTQALKVIWTHIKEHNLQKPNDKKIIICDEKLKKIFGG 120

Query: 121 KDEVGFLEIAGLISPHFL 139
           KDEVGFLEIAGLIS HFL
Sbjct: 121 KDEVGFLEIAGLISSHFL 138

[Close]

BLAST of Bhi05G000883 vs. NCBI nr
Match: XP_022972543.1 (uncharacterized protein LOC111471082 [Cucurbita maxima])

HSP 1 Score: 242.3 bits (617), Expect = 9.9e-61
Identity = 121/138 (87.68%), Postives = 130/138 (94.20%), Query Frame = 0


Query: 1   MAFLSTFISGEPSLLVVKASATATSVKQPYQLPLPNLRFARTVTFASASNQATASHRQPR 60
           MAF+STF+SGE SLL+ +ASA  +SVK PYQLPLPNLRF+RT+TFASASNQATAS RQPR
Sbjct: 1   MAFVSTFVSGELSLLLARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQATASSRQPR 60

Query: 61  GIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFGG 120
           GIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKK+I+CDEKLK IFGG
Sbjct: 61  GIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKIIMCDEKLKKIFGG 120

Query: 121 KDEVGFLEIAGLISPHFL 139
           KDEVGFLEIAGLIS HFL
Sbjct: 121 KDEVGFLEIAGLISSHFL 138

[Close]

BLAST of Bhi05G000883 vs. NCBI nr
Match: XP_022989003.1 (uncharacterized protein LOC111486197 [Cucurbita maxima])

HSP 1 Score: 241.5 bits (615), Expect = 1.7e-60
Identity = 123/138 (89.13%), Postives = 128/138 (92.75%), Query Frame = 0


Query: 1   MAFLSTFISGEPSLLVVKASATATSVKQPYQLPLPNLRFARTVTFASASNQATASHRQPR 60
           MAF+STFISGE SLL V+ASAT++SVK PYQ P  NL FARTVTFAS SNQATAS RQPR
Sbjct: 1   MAFVSTFISGELSLLTVRASATSSSVKHPYQFPPSNLHFARTVTFASTSNQATASQRQPR 60

Query: 61  GIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFGG 120
           GIMKP+RISPEMQALVG PEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFGG
Sbjct: 61  GIMKPKRISPEMQALVGVPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFGG 120

Query: 121 KDEVGFLEIAGLISPHFL 139
           KDEVGFLEIAGLISPHFL
Sbjct: 121 KDEVGFLEIAGLISPHFL 138

[Close]

BLAST of Bhi05G000883 vs. NCBI nr
Match: XP_022927946.1 (uncharacterized protein LOC111434699 [Cucurbita moschata] >XP_023529230.1 uncharacterized protein LOC111792129 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 240.7 bits (613), Expect = 2.9e-60
Identity = 123/138 (89.13%), Postives = 127/138 (92.03%), Query Frame = 0


Query: 1   MAFLSTFISGEPSLLVVKASATATSVKQPYQLPLPNLRFARTVTFASASNQATASHRQPR 60
           MAF+STFISGE SLL V+ASAT +SVK PYQ P  NL FARTVTFAS SNQATAS RQPR
Sbjct: 1   MAFVSTFISGELSLLTVRASATPSSVKHPYQFPPSNLHFARTVTFASTSNQATASQRQPR 60

Query: 61  GIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFGG 120
           GIMKP+RISPEMQALVG PEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFGG
Sbjct: 61  GIMKPKRISPEMQALVGVPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFGG 120

Query: 121 KDEVGFLEIAGLISPHFL 139
           KDEVGFLEIAGLISPHFL
Sbjct: 121 KDEVGFLEIAGLISPHFL 138

The following BLAST results are available for this feature:

BLAST of Bhi05G000883 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q05024\|TRI1_YEAST	4.1e-10	50.00	Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 ...	[more]
sp\|Q08747\|UAF30_YEAST	1.7e-08	48.08	Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATC...	[more]
sp\|O74503\|UAF30_SCHPO	4.3e-07	48.84	Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 97...	[more]

BLAST of Bhi05G000883 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G14880.1	1.8e-32	64.49	SWIB/MDM2 domain superfamily protein	[more]
AT4G34290.1	4.6e-28	52.24	SWIB/MDM2 domain superfamily protein	[more]
AT3G03590.1	7.9e-20	56.41	SWIB/MDM2 domain superfamily protein	[more]
AT1G31760.1	2.3e-19	45.36	SWIB/MDM2 domain superfamily protein	[more]
AT2G35605.1	3.9e-19	47.42	SWIB/MDM2 domain superfamily protein	[more]

BLAST of Bhi05G000883 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C0N2\|A0A1S3C0N2_CUCME	4.2e-52	79.02	SWI/SNF complex component SNF12 homolog OS=Cucumis melo OX=3656 GN=LOC103495293 ...	[more]
tr\|A0A0A0K2G6\|A0A0A0K2G6_CUCSA	1.6e-51	80.00	Brg-1 associated factor OS=Cucumis sativus OX=3659 GN=Csa_7G071540 PE=4 SV=1	[more]
tr\|A0A2I4H7H1\|A0A2I4H7H1_9ROSI	8.3e-40	64.75	zinc finger CCCH domain-containing protein 44-like OS=Juglans regia OX=51240 GN=...	[more]
tr\|V4UA08\|V4UA08_9ROSI	9.2e-39	63.97	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10029545mg PE=4 ...	[more]
tr\|A0A1R3HUD8\|A0A1R3HUD8_COCAP	9.2e-39	68.84	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_17060 PE=4 ...	[more]

BLAST of Bhi05G000883 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022952608.1	2.6e-61	87.68	uncharacterized protein LOC111455244 [Cucurbita moschata]	[more]
XP_023553864.1	2.6e-61	87.68	uncharacterized protein LOC111811315 [Cucurbita pepo subsp. pepo]	[more]
XP_022972543.1	9.9e-61	87.68	uncharacterized protein LOC111471082 [Cucurbita maxima]	[more]
XP_022989003.1	1.7e-60	89.13	uncharacterized protein LOC111486197 [Cucurbita maxima]	[more]
XP_022927946.1	2.9e-60	89.13	uncharacterized protein LOC111434699 [Cucurbita moschata] >XP_023529230.1 unchar...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036885	SWIB_MDM2_dom_sf
IPR003121	SWIB_MDM2_domain
IPR019835	SWIB_domain

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi05M000883	Bhi05M000883	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019835	SWIB domain	SMART	SM00151	swib_2	coord: 62..138 e-value: 1.8E-28 score: 110.5
IPR003121	SWIB/MDM2 domain	PFAM	PF02201	SWIB	coord: 64..137 e-value: 6.4E-28 score: 96.4
IPR036885	SWIB/MDM2 domain superfamily	GENE3D	G3DSA:1.10.245.10		coord: 56..138 e-value: 1.9E-25 score: 90.6
IPR036885	SWIB/MDM2 domain superfamily	SUPERFAMILY	SSF47592	SWIB/MDM2 domain	coord: 56..137
None	No IPR available	PANTHER	PTHR13844:SF8	EXPRESSED PROTEIN	coord: 4..138
None	No IPR available	PANTHER	PTHR13844	BRG-1 ASSOCIATED FACTOR 60 BAF60	coord: 4..138

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Bhi05G000883	Csa7G071540	Cucumber (Chinese Long) v2	cuwgoB673
Bhi05G000883	MELO3C018505	Melon (DHL92) v3.5.1	mewgoB217
Bhi05G000883	ClCG02G006640	Watermelon (Charleston Gray)	wcgwgoB268
Bhi05G000883	CSPI07G07010	Wild cucumber (PI 183967)	cpiwgoB684
Bhi05G000883	Cucsa.219300	Cucumber (Gy14) v1	cgywgoB449
Bhi05G000883	CmaCh19G005640	Cucurbita maxima (Rimu)	cmawgoB0658
Bhi05G000883	CmaCh11G017110	Cucurbita maxima (Rimu)	cmawgoB0125
Bhi05G000883	CmoCh19G005790	Cucurbita moschata (Rifu)	cmowgoB0659
Bhi05G000883	CmoCh11G014050	Cucurbita moschata (Rifu)	cmowgoB0112
Bhi05G000883	Lsi03G005610	Bottle gourd (USVL1VR-Ls)	lsiwgoB317
Bhi05G000883	Cp4.1LG15g04530	Cucurbita pepo (Zucchini)	cpewgoB0331
Bhi05G000883	Cp4.1LG04g07720	Cucurbita pepo (Zucchini)	cpewgoB0847
Bhi05G000883	CsGy7G006580	Cucumber (Gy14) v2	cgybwgoB644
Bhi05G000883	MELO3C018505.2	Melon (DHL92) v3.6.1	medwgoB217
Bhi05G000883	Carg16346	Silver-seed gourd	carwgoB0550
Bhi05G000883	CsaV3_7G007990	Cucumber (Chinese Long) v3	cucwgoB698
Bhi05G000883	Cla016079	Watermelon (97103) v1	wgowmB275
Bhi05G000883	Cla97C02G033620	Watermelon (97103) v2	wgowmbB243

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi05G000883	Cucumber (Gy14) v1	cgywgoB445
Bhi05G000883	Cucumber (Gy14) v2	cgybwgoB632
Bhi05G000883	Cucurbita maxima (Rimu)	cmawgoB0116
Bhi05G000883	Cucurbita maxima (Rimu)	cmawgoB0642
Bhi05G000883	Cucurbita moschata (Rifu)	cmowgoB0642
Bhi05G000883	Cucurbita pepo (Zucchini)	cpewgoB0317
Bhi05G000883	Wild cucumber (PI 183967)	cpiwgoB672
Bhi05G000883	Cucumber (Chinese Long) v3	cucwgoB686
Bhi05G000883	Cucumber (Chinese Long) v2	cuwgoB661
Bhi05G000883	Bottle gourd (USVL1VR-Ls)	lsiwgoB320
Bhi05G000883	Watermelon (Charleston Gray)	wcgwgoB277
Bhi05G000883	Watermelon (97103) v2	wgowmbB253
Bhi05G000883	Silver-seed gourd	carwgoB0548