Cucsa.219300.1 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.219300.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	SWIB domain-containing protein
Location	scaffold01658 : 1125028 .. 1126906 (-)
Sequence length	757

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCGAAATTCGACCTTCTCGAGTTATCGCTCTTACCGCTTCTCCTTCTTCGCTTTATCCATTTTTTGAGAACAACCTTTCGTCACTCACTGCCTTCCGGCCATGGCTTTCCTCTCCACCTTCATCGCCGTCAAACCGTCGCTCCTCGTCGTCAAACCCTCCCCCACCACCTCCTCCTCCAACCTCAAGCATCTCAATCAACTCCCTCTCCCTGATTTGCGCTTCCCCCGCACTGTTACCTTCGCTTTAGCGTCCAAGCAGGCCACTGCCCCTAGCCGGGAGCCCCGTGGCATCACGAAGCCCAGGAAAATTTCACCGGAGTTGCAAGCGCTTGTCGGCGCTCCTGAGATTTCCCGCACTCAAGCTCTTAAGGTCATTTGGGCTTACATTAAAGAAAATAATCTTCAGGTAGAATCTCTTTTTCTTTTCGTTTTCTGTTTTTCTTTTTCTTTCCATGCTGTTTTCATTACTTTTCTTTTATATGTTTTTTTTTTCTTCAGTGGGGTTGAAAGTTTATGGGGTTTCCATAGTTTTCTAAACCCTCATTTCAGAACCAGATATTGGATGTTGGTCTTTAGAATTTTTCTTGCTGTGTTCTTTCTGGAATGCGGTTTAATGGTTATTAGATAATGTTTTTTCGACTCTTAATGGTTTATTTTGAAGATTGTTTCGATGTGGTTTTTCTTATTAGTGAAGTTTGTATAAGAAAGTGGGAGATGGTTGCTCTGATTTGTTGGGTTCGGAGGAGGTTGTAAGATATATTGGCATGGTTTGAAAATTTCTTGTTCTGAAATAATGGTTTTGGATTGTTGGTCTTTAGAATTTTCTTGCTGTGTTGTTGTTAGAGTGTGCTTTGATGATCATTGGATGAAAGCTTTTAACAACTCTTAATGCATTATTTTGGAGAGGGTTTAGATGTGGCAAGTGGATAGTAATGCTTGTTACTGGGTTTGAGGCCTTTAAGGTTTCTGAAGAGCTTTTTCTGTTCTGGGTTTCGTTAACTCTTTTCTGATTTGTACATTTGTTTTCAAAGACATGGAACAGTTCTAGAAAAACATACTTTTGTTTTTCGGTTTTCCATTGTTTCATAGATTGAATCCATTCATTTAATAGCTGTTTTTATGAACATAAACACCTTCTGAAATTTATATTGGTAAAAGGTTCTAATTACAGTATCTCTTTCTGTACTCACCACATGCTCTCATTGCGTAGTTTTTACCCTAATTCCTATACGAGCTTTATCATTCTCCTCTTATTTGCTCTCGCCGTAAACTCTCCCACTTTCTTATGCAATTCTGTTTGTCTAAAAACTCGCTCACCATTTTTTGTTCCCTACCTTTAGCTTTGTCATTTACGTTGGTGATATCTACTTTAGTTCCATGAGTTCTCTTACATTACTGCATTAAACTTGTCCTTGGTGTTTCATAAAAGAACATAAATTGGTTATGATAGTTGATGTCTTACAAATCATTGATTTGAAGCACAGAAACAATTTGTTTTTCTTTTAAATTATTTTCTTTATTCTTTCAGAAACCAAGCAACAAGAAAGTCATAGCTTGCGACGAGAAACTGAAGAAGATATTTGGAGGGAAAGATGAGGTTGGATTTCTGGAGATTGCAGGTTTAATAAGTCCACACTTTCTATAATTATTCGAAGTATGGAAGATAGACATAATGGACCATCTTTTCAGTCCATGAATATGAACCTTTTTTTCTTTTTGGTTGTGGGAGTGTCTCAACTCAGGTATTGCTCACTGAATCATGCAGTTGAGAGCCCACCTTATGATTAGTAGTTGAATAGAGAGAAAGAAAGCCTTTGTAAGAACTATGTTTGGTGGTTTATTGTAGAGATTGTTATATGGAAATCTCGTTTAGTTATT

mRNA sequence

TCCGAAATTCGACCTTCTCGAGTTATCGCTCTTACCGCTTCTCCTTCTTCGCTTTATCCATTTTTTGAGAACAACCTTTCGTCACTCACTGCCTTCCGGCCATGGCTTTCCTCTCCACCTTCATCGCCGTCAAACCGTCGCTCCTCGTCGTCAAACCCTCCCCCACCACCTCCTCCTCCAACCTCAAGCATCTCAATCAACTCCCTCTCCCTGATTTGCGCTTCCCCCGCACTGTTACCTTCGCTTTAGCGTCCAAGCAGGCCACTGCCCCTAGCCGGGAGCCCCGTGGCATCACGAAGCCCAGGAAAATTTCACCGGAGTTGCAAGCGCTTGTCGGCGCTCCTGAGATTTCCCGCACTCAAGCTCTTAAGGTCATTTGGGCTTACATTAAAGAAAATAATCTTCAGAAACCAAGCAACAAGAAAGTCATAGCTTGCGACGAGAAACTGAAGAAGATATTTGGAGGGAAAGATGAGGTTGGATTTCTGGAGATTGCAGGTTTAATAAGTCCACACTTTCTATAATTATTCGAAGTATGGAAGATAGACATAATGGACCATCTTTTCAGTCCATGAATATGAACCTTTTTTTCTTTTTGGTTGTGGGAGTGTCTCAACTCAGGTATTGCTCACTGAATCATGCAGTTGAGAGCCCACCTTATGATTAGTAGTTGAATAGAGAGAAAGAAAGCCTTTGTAAGAACTATGTTTGGTGGTTTATTGTAGAGATTGTTATATGGAAATCTCGTTTAGTTATT

Coding sequence (CDS)

ATGGCTTTCCTCTCCACCTTCATCGCCGTCAAACCGTCGCTCCTCGTCGTCAAACCCTCCCCCACCACCTCCTCCTCCAACCTCAAGCATCTCAATCAACTCCCTCTCCCTGATTTGCGCTTCCCCCGCACTGTTACCTTCGCTTTAGCGTCCAAGCAGGCCACTGCCCCTAGCCGGGAGCCCCGTGGCATCACGAAGCCCAGGAAAATTTCACCGGAGTTGCAAGCGCTTGTCGGCGCTCCTGAGATTTCCCGCACTCAAGCTCTTAAGGTCATTTGGGCTTACATTAAAGAAAATAATCTTCAGAAACCAAGCAACAAGAAAGTCATAGCTTGCGACGAGAAACTGAAGAAGATATTTGGAGGGAAAGATGAGGTTGGATTTCTGGAGATTGCAGGTTTAATAAGTCCACACTTTCTATAA

Protein sequence

MAFLSTFIAVKPSLLVVKPSPTTSSSNLKHLNQLPLPDLRFPRTVTFALASKQATAPSREPRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSNKKVIACDEKLKKIFGGKDEVGFLEIAGLISPHFL*

Homology

[Close]

BLAST of Cucsa.219300.1 vs. Swiss-Prot
Match: UAF30_SCHPO (Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=spp27 PE=1 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.2e-10
Identity = 29/69 (42.03%), Postives = 46/69 (66.67%), Query Frame = 1


Query: 52  KQATAPSREPRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSNKKVIA 111
           K+   P+  P  + KP K+SP+L   +G  ++SR Q +K +W YIK ++LQ P++K+ I 
Sbjct: 107 KRNQDPANNP--LNKPMKLSPKLAEFLGLEQLSRPQTVKKLWEYIKAHDLQDPNDKRTIL 166

Query: 112 CDEKLKKIF 121
           CD+KLK +F
Sbjct: 167 CDDKLKSVF 173

[Close]

BLAST of Cucsa.219300.1 vs. Swiss-Prot
Match: TRI1_YEAST (Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRI1 PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.7e-09
Identity = 27/54 (50.00%), Postives = 40/54 (74.07%), Query Frame = 1


Query: 70  ISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSNKKVIACDEKLKKIFGGK 124
           +S  LQ  +G+ E+ RTQ +K+IW YIKE++LQ P +++ I CDEK++ IFG K
Sbjct: 126 LSAPLQKFLGSEELPRTQVVKMIWQYIKEHDLQNPKDRREILCDEKMEPIFGKK 179

[Close]

BLAST of Cucsa.219300.1 vs. Swiss-Prot
Match: UAF30_YEAST (Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UAF30 PE=1 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 4.6e-09
Identity = 28/57 (49.12%), Postives = 41/57 (71.93%), Query Frame = 1


Query: 65  TKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSNKKVIACDEKLKKIFG 122
           T+   +S  L +L+G  E++RT+ ++ +WAYIK +NLQ P+NKK I CDEKL+ I G
Sbjct: 121 TRKVTLSKSLASLLGEHELTRTEVVRRLWAYIKAHNLQNPNNKKEILCDEKLELILG 177

[Close]

BLAST of Cucsa.219300.1 vs. TrEMBL
Match: A0A0A0K2G6_CUCSA (Brg-1 associated factor OS=Cucumis sativus GN=Csa_7G071540 PE=4 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 1.7e-71
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 1


Query: 1   MAFLSTFIAVKPSLLVVKPSPTTSSSNLKHLNQLPLPDLRFPRTVTFALASKQATAPSRE 60
           MAFLSTFIAVKPSLLVVKPSPTTSSSNLKHLNQLPLPDLRFPRTVTFALASKQATAPSRE
Sbjct: 1   MAFLSTFIAVKPSLLVVKPSPTTSSSNLKHLNQLPLPDLRFPRTVTFALASKQATAPSRE 60

Query: 61  PRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSNKKVIACDEKLKKIF 120
           PRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSNKKVIACDEKLKKIF
Sbjct: 61  PRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSNKKVIACDEKLKKIF 120

Query: 121 GGKDEVGFLEIAGLISPHFL 141
           GGKDEVGFLEIAGLISPHFL
Sbjct: 121 GGKDEVGFLEIAGLISPHFL 140

[Close]

BLAST of Cucsa.219300.1 vs. TrEMBL
Match: A0A0D2SYU2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G021200 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 2.5e-38
Identity = 91/139 (65.47%), Postives = 104/139 (74.82%), Query Frame = 1


Query: 2   AFLSTFIAVKPSLLVVKPSPTTSSSNLKHLNQLPLPDLRFPRTVTFALASKQATAPSREP 61
           AFLSTFI+ +     V  SP +SSS    L  LP   +R  RTVT A AS+ AT P R P
Sbjct: 6   AFLSTFISPQ----TVSFSPKSSSS----LRLLPPTSVRMVRTVTLATASQPATGP-RTP 65

Query: 62  RGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSNKKVIACDEKLKKIFG 121
           RGI KPR+++PE+Q +VG PEI RTQALK IWAYIKE+NLQ P NKK+I CDEKLKKIFG
Sbjct: 66  RGIMKPRRVTPEMQDVVGVPEIPRTQALKQIWAYIKEHNLQDPENKKIINCDEKLKKIFG 125

Query: 122 GKDEVGFLEIAGLISPHFL 141
           GKD +GFLEIAGLISPHFL
Sbjct: 126 GKDRIGFLEIAGLISPHFL 135

[Close]

BLAST of Cucsa.219300.1 vs. TrEMBL
Match: A0A0B0NPQ8_GOSAR (Protein TRI1 OS=Gossypium arboreum GN=F383_01511 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.3e-37
Identity = 90/139 (64.75%), Postives = 105/139 (75.54%), Query Frame = 1


Query: 2   AFLSTFIAVKPSLLVVKPSPTTSSSNLKHLNQLPLPDLRFPRTVTFALASKQATAPSREP 61
           AFLSTFI+ +     V  SP + SS    L+ LP  ++R  RTVT A AS+ AT P R P
Sbjct: 6   AFLSTFISPQ----TVSFSPKSFSS----LSLLPPTNVRTVRTVTLATASQPATGP-RTP 65

Query: 62  RGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSNKKVIACDEKLKKIFG 121
           RGI KPR+++PE+Q +VG PEI RTQALK IWAYIKE+NLQ P NKK+I CDEKLKKIFG
Sbjct: 66  RGIMKPRRVTPEMQDVVGVPEIPRTQALKQIWAYIKEHNLQDPENKKIINCDEKLKKIFG 125

Query: 122 GKDEVGFLEIAGLISPHFL 141
           GKD +GFLEIAGLISPHFL
Sbjct: 126 GKDRIGFLEIAGLISPHFL 135

[Close]

BLAST of Cucsa.219300.1 vs. TrEMBL
Match: M5VLL6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013038mg PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 1.4e-36
Identity = 86/140 (61.43%), Postives = 103/140 (73.57%), Query Frame = 1


Query: 5   STFIAVKPSLLVVKPSPTTSSSNLKHLNQLPLPD----LRFPRTVTFALASKQATAPSRE 64
           STF++ + S       P TS S+     + P P+    LR  R  T A ASK AT P R+
Sbjct: 10  STFLSGETSSF-----PNTSFSSSSSSLRFPHPNFPANLRMVRIPTLATASKPATTP-RQ 69

Query: 65  PRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSNKKVIACDEKLKKIF 124
           PRGI KPRK+SPE+QALVG PEISRTQALK+IWA+IK+NNLQ P NK++I CDEKLKKIF
Sbjct: 70  PRGIMKPRKVSPEMQALVGTPEISRTQALKLIWAHIKQNNLQDPQNKRIIVCDEKLKKIF 129

Query: 125 GGKDEVGFLEIAGLISPHFL 141
            GKD+VGFLE+AGLI+PHFL
Sbjct: 130 AGKDQVGFLEVAGLITPHFL 143

[Close]

BLAST of Cucsa.219300.1 vs. TrEMBL
Match: V4UA08_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029545mg PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 5.3e-36
Identity = 81/138 (58.70%), Postives = 100/138 (72.46%), Query Frame = 1


Query: 3   FLSTFIAVKPSLLVVKPSPTTSSSNLKHLNQLPLPDLRFPRTVTFALASKQATAPSREPR 62
           F +TF++ + +   +KPS +        ++      LR  RTVT A AS +     REPR
Sbjct: 8   FTTTFLSPETASSFLKPSSSGKPGQFSPVH------LRTVRTVTLATASPKPVTGKREPR 67

Query: 63  GITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSNKKVIACDEKLKKIFGG 122
           GI KPR++SPE++A VGAPEI RTQALK+IWA+IK++NLQ P NKKVI CDEKLKKIFGG
Sbjct: 68  GIMKPRRVSPEMEAFVGAPEIPRTQALKLIWAHIKQHNLQDPENKKVIICDEKLKKIFGG 127

Query: 123 KDEVGFLEIAGLISPHFL 141
           +D VGFLEIAGLISPHFL
Sbjct: 128 RDRVGFLEIAGLISPHFL 139

[Close]

BLAST of Cucsa.219300.1 vs. TAIR10
Match: AT2G14880.1 (AT2G14880.1 SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 138.7 bits (348), Expect = 2.8e-33
Identity = 77/137 (56.20%), Postives = 95/137 (69.34%), Query Frame = 1


Query: 5   STFIAVKPSLLVVKPSPTTSSSNLKHLNQLPLPDLRFPRTVTFALASKQATAPS-REPRG 64
           STF+ +K +      +P+T  S+L+  +  P   LR  R VT A  S + TA + R PRG
Sbjct: 9   STFLCIKTTSF---RNPSTPLSSLRFASH-PAAKLRLVRAVTSATESSEPTATNKRVPRG 68

Query: 65  ITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSNKKVIACDEKLKKIFGGK 124
           I KPR +SPE+Q +V  PEI+RTQALK IWAYIKE++LQ P NK+ I CDEKLKKIF G+
Sbjct: 69  IMKPRPVSPEMQDIVELPEIARTQALKRIWAYIKEHDLQDPQNKREILCDEKLKKIFEGR 128

Query: 125 DEVGFLEIAGLISPHFL 141
           D VGFLEIA LI PHFL
Sbjct: 129 DRVGFLEIAKLIGPHFL 141

[Close]

BLAST of Cucsa.219300.1 vs. TAIR10
Match: AT4G34290.1 (AT4G34290.1 SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 130.2 bits (326), Expect = 1.0e-30
Identity = 77/141 (54.61%), Postives = 92/141 (65.25%), Query Frame = 1


Query: 3   FLSTFIAVKPSLLVVKPSPTTSSSNLKHLNQLPLPDLRFPRTVTFALASKQ---ATAPSR 62
           F +TF+ V  + L    S   S S+L+     P  +LR  R VT A A+      T  +R
Sbjct: 8   FSTTFLCVDTAPL---RSSMLSPSSLRLSPNHPT-NLRMVRAVTSAAAASSDPTTTTKTR 67

Query: 63  EPRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSNKKVIACDEKLKKI 122
           EPRGI KPR +S  +Q +VG PEI RTQALK IWAYIKE++LQ P NK+ I CDEKLKKI
Sbjct: 68  EPRGIMKPRPVSQAMQDVVGVPEIPRTQALKRIWAYIKEHDLQDPQNKRDILCDEKLKKI 127

Query: 123 FGGKDEVGFLEIAGLISPHFL 141
           F GK+ VGFLEIA LI PHFL
Sbjct: 128 FEGKERVGFLEIAKLIGPHFL 144

[Close]

BLAST of Cucsa.219300.1 vs. TAIR10
Match: AT1G31760.1 (AT1G31760.1 SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 96.3 bits (238), Expect = 1.6e-20
Identity = 47/97 (48.45%), Postives = 64/97 (65.98%), Query Frame = 1


Query: 43  RTVTFALASKQATAPSREPRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQ 102
           RT+    A+ +A   + E +GI K R +S +L +  G  E++R  ALK +W Y+K +NLQ
Sbjct: 12  RTLMSKAATVEAVTVAGEGKGIFKTRPVSQQLASFAGERELTRGSALKKVWEYVKLHNLQ 71

Query: 103 KPSNKKVIACDEKLKKIFGGKDEVGFLEIAGLISPHF 140
            P+NKK I CD+KLK IF GKD+VG  EI  L+SPHF
Sbjct: 72  NPANKKEIHCDDKLKTIFDGKDKVGITEIMKLLSPHF 108

[Close]

BLAST of Cucsa.219300.1 vs. TAIR10
Match: AT2G35605.1 (AT2G35605.1 SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 94.0 bits (232), Expect = 8.0e-20
Identity = 49/97 (50.52%), Postives = 59/97 (60.82%), Query Frame = 1


Query: 43  RTVTFALASKQATAPSREPRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQ 102
           R +    AS       R+  GI K   +S  L   +G  E+SRT A+K IW YIK NNLQ
Sbjct: 9   RVLMAKAASSTGAKTGRQGTGILKVVPVSKPLANFIGENEVSRTTAVKKIWEYIKLNNLQ 68

Query: 103 KPSNKKVIACDEKLKKIFGGKDEVGFLEIAGLISPHF 140
            P NK+ I CDE+LK IF GKD VGFLEI+ L+S HF
Sbjct: 69  NPVNKREILCDEQLKTIFSGKDTVGFLEISKLLSQHF 105

[Close]

BLAST of Cucsa.219300.1 vs. TAIR10
Match: AT3G03590.1 (AT3G03590.1 SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 92.0 bits (227), Expect = 3.1e-19
Identity = 47/92 (51.09%), Postives = 62/92 (67.39%), Query Frame = 1


Query: 51  SKQATAPSREPR--GITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSNKK 110
           +K  +   + PR  GI K   +SP L   +G  E SRT A+K IW YIK ++LQ P++K+
Sbjct: 49  AKSDSPAKKTPRSTGIFKVTPVSPVLAQFLGTGETSRTDAIKGIWTYIKSHDLQNPADKR 108

Query: 111 VIACDEKLKKIFGGKDEVGFLEIAGLISPHFL 141
            I CDE LK IF GKD+VGFLEI+ L+SPHF+
Sbjct: 109 EIFCDETLKLIFEGKDKVGFLEISKLLSPHFV 140

[Close]

BLAST of Cucsa.219300.1 vs. NCBI nr
Match: gi|449438339|ref|XP_004136946.1| (PREDICTED: uncharacterized protein LOC101217337 [Cucumis sativus])

HSP 1 Score: 276.6 bits (706), Expect = 2.5e-71
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 1


Query: 1   MAFLSTFIAVKPSLLVVKPSPTTSSSNLKHLNQLPLPDLRFPRTVTFALASKQATAPSRE 60
           MAFLSTFIAVKPSLLVVKPSPTTSSSNLKHLNQLPLPDLRFPRTVTFALASKQATAPSRE
Sbjct: 1   MAFLSTFIAVKPSLLVVKPSPTTSSSNLKHLNQLPLPDLRFPRTVTFALASKQATAPSRE 60

Query: 61  PRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSNKKVIACDEKLKKIF 120
           PRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSNKKVIACDEKLKKIF
Sbjct: 61  PRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSNKKVIACDEKLKKIF 120

Query: 121 GGKDEVGFLEIAGLISPHFL 141
           GGKDEVGFLEIAGLISPHFL
Sbjct: 121 GGKDEVGFLEIAGLISPHFL 140

[Close]

BLAST of Cucsa.219300.1 vs. NCBI nr
Match: gi|659110045|ref|XP_008455019.1| (PREDICTED: uncharacterized protein LOC103495293 [Cucumis melo])

HSP 1 Score: 258.5 bits (659), Expect = 7.0e-66
Identity = 133/143 (93.01%), Postives = 135/143 (94.41%), Query Frame = 1


Query: 1   MAFLSTFIAVKPSLLVVKPSPTTSSSN---LKHLNQLPLPDLRFPRTVTFALASKQATAP 60
           MAFLSTFIAVKPSLLVVKPSPTTSSS+   LKHLNQLPLPDLRFPRTVTFA AS QATAP
Sbjct: 1   MAFLSTFIAVKPSLLVVKPSPTTSSSSSSSLKHLNQLPLPDLRFPRTVTFAFASNQATAP 60

Query: 61  SREPRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSNKKVIACDEKLK 120
            REPRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPS+KKVI CDEKLK
Sbjct: 61  RREPRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSDKKVIVCDEKLK 120

Query: 121 KIFGGKDEVGFLEIAGLISPHFL 141
            IFGGKDEVGFLEIAGLISPHFL
Sbjct: 121 NIFGGKDEVGFLEIAGLISPHFL 143

[Close]

BLAST of Cucsa.219300.1 vs. NCBI nr
Match: gi|823203404|ref|XP_012436129.1| (PREDICTED: SWI/SNF complex component SNF12 homolog [Gossypium raimondii])

HSP 1 Score: 166.4 bits (420), Expect = 3.6e-38
Identity = 91/139 (65.47%), Postives = 104/139 (74.82%), Query Frame = 1


Query: 2   AFLSTFIAVKPSLLVVKPSPTTSSSNLKHLNQLPLPDLRFPRTVTFALASKQATAPSREP 61
           AFLSTFI+ +     V  SP +SSS    L  LP   +R  RTVT A AS+ AT P R P
Sbjct: 6   AFLSTFISPQ----TVSFSPKSSSS----LRLLPPTSVRMVRTVTLATASQPATGP-RTP 65

Query: 62  RGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSNKKVIACDEKLKKIFG 121
           RGI KPR+++PE+Q +VG PEI RTQALK IWAYIKE+NLQ P NKK+I CDEKLKKIFG
Sbjct: 66  RGIMKPRRVTPEMQDVVGVPEIPRTQALKQIWAYIKEHNLQDPENKKIINCDEKLKKIFG 125

Query: 122 GKDEVGFLEIAGLISPHFL 141
           GKD +GFLEIAGLISPHFL
Sbjct: 126 GKDRIGFLEIAGLISPHFL 135

[Close]

BLAST of Cucsa.219300.1 vs. NCBI nr
Match: gi|728834326|gb|KHG13769.1| (Protein TRI1 [Gossypium arboreum])

HSP 1 Score: 164.1 bits (414), Expect = 1.8e-37
Identity = 90/139 (64.75%), Postives = 105/139 (75.54%), Query Frame = 1


Query: 2   AFLSTFIAVKPSLLVVKPSPTTSSSNLKHLNQLPLPDLRFPRTVTFALASKQATAPSREP 61
           AFLSTFI+ +     V  SP + SS    L+ LP  ++R  RTVT A AS+ AT P R P
Sbjct: 6   AFLSTFISPQ----TVSFSPKSFSS----LSLLPPTNVRTVRTVTLATASQPATGP-RTP 65

Query: 62  RGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSNKKVIACDEKLKKIFG 121
           RGI KPR+++PE+Q +VG PEI RTQALK IWAYIKE+NLQ P NKK+I CDEKLKKIFG
Sbjct: 66  RGIMKPRRVTPEMQDVVGVPEIPRTQALKQIWAYIKEHNLQDPENKKIINCDEKLKKIFG 125

Query: 122 GKDEVGFLEIAGLISPHFL 141
           GKD +GFLEIAGLISPHFL
Sbjct: 126 GKDRIGFLEIAGLISPHFL 135

[Close]

BLAST of Cucsa.219300.1 vs. NCBI nr
Match: gi|658057342|ref|XP_008364448.1| (PREDICTED: uncharacterized protein LOC103428126 [Malus domestica])

HSP 1 Score: 162.9 bits (411), Expect = 4.0e-37
Identity = 87/136 (63.97%), Postives = 100/136 (73.53%), Query Frame = 1


Query: 5   STFIAVKPSLLVVKPSPTTSSSNLKHLNQLPLPDLRFPRTVTFALASKQATAPSREPRGI 64
           STF + + S  +  P  + SSS    L   P  +LR  R  T A ASK AT   REPRGI
Sbjct: 13  STFFSGETSSFISPPFSSPSSS----LRFAPA-NLRMVRIPTLATASKPATTTPREPRGI 72

Query: 65  TKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSNKKVIACDEKLKKIFGGKD 124
            KPRK+SPE+QALVGAPEISRTQALK IWA+IK+NNLQ P NK++I CDEKLKKIF GKD
Sbjct: 73  MKPRKVSPEMQALVGAPEISRTQALKQIWAHIKQNNLQDPQNKRIIVCDEKLKKIFAGKD 132

Query: 125 EVGFLEIAGLISPHFL 141
            VGFLE+AGLI+PHFL
Sbjct: 133 RVGFLEVAGLITPHFL 143

The following BLAST results are available for this feature:

BLAST of Cucsa.219300.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
UAF30_SCHPO	4.2e-10	42.03	Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 97...	[more]
TRI1_YEAST	2.7e-09	50.00	Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRI1 PE...	[more]
UAF30_YEAST	4.6e-09	49.12	Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATC...	[more]

BLAST of Cucsa.219300.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K2G6_CUCSA	1.7e-71	100.00	Brg-1 associated factor OS=Cucumis sativus GN=Csa_7G071540 PE=4 SV=1	[more]
A0A0D2SYU2_GOSRA	2.5e-38	65.47	Uncharacterized protein OS=Gossypium raimondii GN=B456_008G021200 PE=4 SV=1	[more]
A0A0B0NPQ8_GOSAR	1.3e-37	64.75	Protein TRI1 OS=Gossypium arboreum GN=F383_01511 PE=4 SV=1	[more]
M5VLL6_PRUPE	1.4e-36	61.43	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013038mg PE=4 SV=1	[more]
V4UA08_9ROSI	5.3e-36	58.70	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029545mg PE=4 SV=1	[more]

BLAST of Cucsa.219300.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G14880.1	2.8e-33	56.20	SWIB/MDM2 domain superfamily protein	[more]
AT4G34290.1	1.0e-30	54.61	SWIB/MDM2 domain superfamily protein	[more]
AT1G31760.1	1.6e-20	48.45	SWIB/MDM2 domain superfamily protein	[more]
AT2G35605.1	8.0e-20	50.52	SWIB/MDM2 domain superfamily protein	[more]
AT3G03590.1	3.1e-19	51.09	SWIB/MDM2 domain superfamily protein	[more]

BLAST of Cucsa.219300.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449438339\|ref\|XP_004136946.1\|	2.5e-71	100.00	PREDICTED: uncharacterized protein LOC101217337 [Cucumis sativus]	[more]
gi\|659110045\|ref\|XP_008455019.1\|	7.0e-66	93.01	PREDICTED: uncharacterized protein LOC103495293 [Cucumis melo]	[more]
gi\|823203404\|ref\|XP_012436129.1\|	3.6e-38	65.47	PREDICTED: SWI/SNF complex component SNF12 homolog [Gossypium raimondii]	[more]
gi\|728834326\|gb\|KHG13769.1\|	1.8e-37	64.75	Protein TRI1 [Gossypium arboreum]	[more]
gi\|658057342\|ref\|XP_008364448.1\|	4.0e-37	63.97	PREDICTED: uncharacterized protein LOC103428126 [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR003121	SWIB_MDM2_domain
IPR019835	SWIB_domain

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.219300	Cucsa.219300	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.219300.1	Cucsa.219300.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.219300.1.CDS.2	Cucsa.219300.1.CDS.2	CDS
Cucsa.219300.1.CDS.1	Cucsa.219300.1.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.219300.1.three_prime_UTR.1	Cucsa.219300.1.three_prime_UTR.1	three_prime_UTR

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.219300.1.five_prime_UTR.1	Cucsa.219300.1.five_prime_UTR.1	five_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003121	SWIB/MDM2 domain	GENE3D	G3DSA:1.10.245.10		coord: 58..139 score: 6.2
IPR003121	SWIB/MDM2 domain	PFAM	PF02201	SWIB	coord: 66..139 score: 3.7
IPR003121	SWIB/MDM2 domain	unknown	SSF47592	SWIB/MDM2 domain	coord: 60..139 score: 9.16
IPR019835	SWIB domain	SMART	SM00151	swib_2	coord: 64..140 score: 7.7
None	No IPR available	PANTHER	PTHR13844	BRG-1 ASSOCIATED FACTOR 60 BAF60	coord: 51..140 score: 1.4
None	No IPR available	PANTHER	PTHR13844:SF8	EXPRESSED PROTEIN	coord: 51..140 score: 1.4