Cucsa.218660 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.218660
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionZinc finger-like protein
Locationscaffold01658 : 679366 .. 680163 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGAACATAACTTTGATGATTGTATGTCTACTGGTTGCTTCATGGGTATGTCACTAAGAATTACCGATCCCGACTTGAGCCTTCAACCACAAAGCCAAAATCAAACTCCACACAACTCCCCAACATTTGTCAAACAGATCAACCTGAAGTTAAAAGTTGAAGTCAAATGCCAACACTTTCAAGCAGATGAAGAAGGCGACACATTTGCATCAACTTTAATGATTGAACACATAGTTTCACACCATCCCTTTCCAACTTTCCAACTTCCTGTCTCCGTCTTCAGGCATGGTAACAGAACTTTGAAGCGATTACTTTTTCAGCAGTTTCAGATATTTAGAGGCATCATCAACATTCAACTTGTGGCTGACGAAATAATAGAACACTGGGTTAAAAAAGAAGAAGATAGAGAGAATAATTCTGGGGTACTGCTTGAAGAGATATATCCTCTCGAAATTACGATAGAGTTGCTGCTTCTTCGAATGATTCATGCAATAGACCAACCAGAAGAAACGATAGATCAACCACAAGTAACGATGGTTCCAGCAAGCGAGAGTGCTATGGAGAGTATGCTGAAGAGAGTGGAAAAGGAGGAGATAGTGAAAGTGGGTGAGGACAAAAGCATTAATTGTGTTATCTGTTTGGAGGAAATTAGTAAAAAGATGAAAGGAAGTGAGGGAGTGGTGTTACAAATGCCATGCTTGCATATGTTTCATGAAGAATGTATAAGGACGTGGTTGAAGACAAGTCATTACTGCCCAACTTGTAGATTTTCAATGCCTATAAACAACAATTGA

mRNA sequence

ATGGCCGAACATAACTTTGATGATTGTATGTCTACTGGTTGCTTCATGGGTATGTCACTAAGAATTACCGATCCCGACTTGAGCCTTCAACCACAAAGCCAAAATCAAACTCCACACAACTCCCCAACATTTGTCAAACAGATCAACCTGAAGTTAAAAGTTGAAGTCAAATGCCAACACTTTCAAGCAGATGAAGAAGGCGACACATTTGCATCAACTTTAATGATTGAACACATAGTTTCACACCATCCCTTTCCAACTTTCCAACTTCCTGTCTCCGTCTTCAGGCATGGTAACAGAACTTTGAAGCGATTACTTTTTCAGCAGTTTCAGATATTTAGAGGCATCATCAACATTCAACTTGTGGCTGACGAAATAATAGAACACTGGGTTAAAAAAGAAGAAGATAGAGAGAATAATTCTGGGGTACTGCTTGAAGAGATATATCCTCTCGAAATTACGATAGAGTTGCTGCTTCTTCGAATGATTCATGCAATAGACCAACCAGAAGAAACGATAGATCAACCACAAGTAACGATGGTTCCAGCAAGCGAGAGTGCTATGGAGAGTATGCTGAAGAGAGTGGAAAAGGAGGAGATAGTGAAAGTGGGTGAGGACAAAAGCATTAATTGTGTTATCTGTTTGGAGGAAATTAGTAAAAAGATGAAAGGAAGTGAGGGAGTGGTGTTACAAATGCCATGCTTGCATATGTTTCATGAAGAATGTATAAGGACGTGGTTGAAGACAAGTCATTACTGCCCAACTTGTAGATTTTCAATGCCTATAAACAACAATTGA

Coding sequence (CDS)

ATGGCCGAACATAACTTTGATGATTGTATGTCTACTGGTTGCTTCATGGGTATGTCACTAAGAATTACCGATCCCGACTTGAGCCTTCAACCACAAAGCCAAAATCAAACTCCACACAACTCCCCAACATTTGTCAAACAGATCAACCTGAAGTTAAAAGTTGAAGTCAAATGCCAACACTTTCAAGCAGATGAAGAAGGCGACACATTTGCATCAACTTTAATGATTGAACACATAGTTTCACACCATCCCTTTCCAACTTTCCAACTTCCTGTCTCCGTCTTCAGGCATGGTAACAGAACTTTGAAGCGATTACTTTTTCAGCAGTTTCAGATATTTAGAGGCATCATCAACATTCAACTTGTGGCTGACGAAATAATAGAACACTGGGTTAAAAAAGAAGAAGATAGAGAGAATAATTCTGGGGTACTGCTTGAAGAGATATATCCTCTCGAAATTACGATAGAGTTGCTGCTTCTTCGAATGATTCATGCAATAGACCAACCAGAAGAAACGATAGATCAACCACAAGTAACGATGGTTCCAGCAAGCGAGAGTGCTATGGAGAGTATGCTGAAGAGAGTGGAAAAGGAGGAGATAGTGAAAGTGGGTGAGGACAAAAGCATTAATTGTGTTATCTGTTTGGAGGAAATTAGTAAAAAGATGAAAGGAAGTGAGGGAGTGGTGTTACAAATGCCATGCTTGCATATGTTTCATGAAGAATGTATAAGGACGTGGTTGAAGACAAGTCATTACTGCCCAACTTGTAGATTTTCAATGCCTATAAACAACAATTGA

Protein sequence

MAEHNFDDCMSTGCFMGMSLRITDPDLSLQPQSQNQTPHNSPTFVKQINLKLKVEVKCQHFQADEEGDTFASTLMIEHIVSHHPFPTFQLPVSVFRHGNRTLKRLLFQQFQIFRGIINIQLVADEIIEHWVKKEEDRENNSGVLLEEIYPLEITIELLLLRMIHAIDQPEETIDQPQVTMVPASESAMESMLKRVEKEEIVKVGEDKSINCVICLEEISKKMKGSEGVVLQMPCLHMFHEECIRTWLKTSHYCPTCRFSMPINNN*
Homology
[Close]
BLAST of Cucsa.218660 vs. Swiss-Prot
Match: SDIR1_ARATH (E3 ubiquitin-protein ligase SDIR1 OS=Arabidopsis thaliana GN=SDIR1 PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.4e-06
Identity = 47/208 (22.60%), Postives = 77/208 (37.02%), Query Frame = 1 

Query: 52  LKVEVKCQHFQADEEGDTFASTLMIEHI-VSHHPFPTFQLPVSVFRHGNRTLKRLLFQQF 111
           L++   CQ  QA  +    A++ +  H  +  H  P+  L       G R    LL ++F
Sbjct: 77  LRMYATCQQLQAHAQAQAAAASGLFSHTELRLHVPPSIALATRGRLQGLRLQLALLDREF 136

Query: 112 QIFRGIINIQLVADEIIEHWVKKEEDRENNSGVLLEEIYPLEITIELLLLRMIHAIDQPE 171
                        D   E     + D  + + +  EEI  L +                 
Sbjct: 137 D------------DLDYETLRALDSDNVSTTSMSEEEINALPV--------------HKY 196

Query: 172 ETIDQPQVTMVPASESAMESMLKRVEKEEIVKVGEDKSINCVICLEEISKKMKGSEGVVL 231
           + +D      +    S   S  K ++     K G +  + C +CLE+++        +V 
Sbjct: 197 KVLDPENGCSLAKQASTSSSAEKMLDSANESKKGTEDELTCSVCLEQVTVGE-----IVR 253

Query: 232 QMPCLHMFHEECIRTWLKTSHYCPTCRF 259
            +PCLH FH  CI  WL+    CP C+F
Sbjct: 257 TLPCLHQFHAGCIDPWLRQQGTCPVCKF 253

[Close]
BLAST of Cucsa.218660 vs. Swiss-Prot
Match: AMFR_HUMAN (E3 ubiquitin-protein ligase AMFR OS=Homo sapiens GN=AMFR PE=1 SV=2)

HSP 1 Score: 52.4 bits (124), Expect = 9.0e-06
Identity = 26/78 (33.33%), Postives = 38/78 (48.72%), Query Frame = 1 

Query: 188 MESMLKRVEKEEIVKVGEDKSINCVICLEEISKKMKGSEGVVLQMPCLHMFHEECIRTWL 247
           ME+       EE+    +D    C IC + +    K        +PC H+FH  C+R+WL
Sbjct: 322 MEARFAVATPEELAVNNDD----CAICWDSMQAARK--------LPCGHLFHNSCLRSWL 381

Query: 248 KTSHYCPTCRFSMPINNN 266
           +    CPTCR S+ I +N
Sbjct: 382 EQDTSCPTCRMSLNIADN 387

[Close]
BLAST of Cucsa.218660 vs. TrEMBL
Match: A0A0A0K493_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G067540 PE=4 SV=1)

HSP 1 Score: 543.9 bits (1400), Expect = 1.1e-151
Identity = 265/265 (100.00%), Postives = 265/265 (100.00%), Query Frame = 1 

Query: 1   MAEHNFDDCMSTGCFMGMSLRITDPDLSLQPQSQNQTPHNSPTFVKQINLKLKVEVKCQH 60
           MAEHNFDDCMSTGCFMGMSLRITDPDLSLQPQSQNQTPHNSPTFVKQINLKLKVEVKCQH
Sbjct: 1   MAEHNFDDCMSTGCFMGMSLRITDPDLSLQPQSQNQTPHNSPTFVKQINLKLKVEVKCQH 60

Query: 61  FQADEEGDTFASTLMIEHIVSHHPFPTFQLPVSVFRHGNRTLKRLLFQQFQIFRGIINIQ 120
           FQADEEGDTFASTLMIEHIVSHHPFPTFQLPVSVFRHGNRTLKRLLFQQFQIFRGIINIQ
Sbjct: 61  FQADEEGDTFASTLMIEHIVSHHPFPTFQLPVSVFRHGNRTLKRLLFQQFQIFRGIINIQ 120

Query: 121 LVADEIIEHWVKKEEDRENNSGVLLEEIYPLEITIELLLLRMIHAIDQPEETIDQPQVTM 180
           LVADEIIEHWVKKEEDRENNSGVLLEEIYPLEITIELLLLRMIHAIDQPEETIDQPQVTM
Sbjct: 121 LVADEIIEHWVKKEEDRENNSGVLLEEIYPLEITIELLLLRMIHAIDQPEETIDQPQVTM 180

Query: 181 VPASESAMESMLKRVEKEEIVKVGEDKSINCVICLEEISKKMKGSEGVVLQMPCLHMFHE 240
           VPASESAMESMLKRVEKEEIVKVGEDKSINCVICLEEISKKMKGSEGVVLQMPCLHMFHE
Sbjct: 181 VPASESAMESMLKRVEKEEIVKVGEDKSINCVICLEEISKKMKGSEGVVLQMPCLHMFHE 240

Query: 241 ECIRTWLKTSHYCPTCRFSMPINNN 266
           ECIRTWLKTSHYCPTCRFSMPINNN
Sbjct: 241 ECIRTWLKTSHYCPTCRFSMPINNN 265

[Close]
BLAST of Cucsa.218660 vs. TrEMBL
Match: A0A0A0K2A1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G067550 PE=4 SV=1)

HSP 1 Score: 394.0 bits (1011), Expect = 1.4e-106
Identity = 197/266 (74.06%), Postives = 226/266 (84.96%), Query Frame = 1 

Query: 1   MAEHNFDDCMSTGCFMGMSLRITDPDLSLQPQSQNQTPHNSPTFVKQINLKLKVEVKCQH 60
           MAE NFDDC S G +MGMSLRITDP          QT  NSPT VKQI+L  KVEVKCQH
Sbjct: 1   MAEQNFDDCTS-GYYMGMSLRITDPI---------QTRSNSPTSVKQIDLNFKVEVKCQH 60

Query: 61  FQADEEGDTFASTLMIEHIVSHHPFPTFQLPVSVFRHGNRTLKRLLFQQFQIFRGIINIQ 120
           FQA EE  TFA+T + EHI++H PFP  QLPVS+F+HG++TLKRLLFQ+FQ+FR IINI+
Sbjct: 61  FQAGEEDTTFATTFLSEHIIAHQPFPALQLPVSIFKHGDKTLKRLLFQKFQMFRAIINIE 120

Query: 121 LVADEIIEHWVKK-EEDRENNSGVLLEEIYPLEITIELLLLRMIHAIDQPEETIDQPQVT 180
           LV D+II+HWVKK E+D+ENNSGV  EEIYPLEITIE+L+L+MI A+DQP+ETIDQPQV 
Sbjct: 121 LVTDQIIKHWVKKVEDDKENNSGV-FEEIYPLEITIEVLVLQMIDAVDQPQETIDQPQVR 180

Query: 181 MVPASESAMESMLKRVEKEEIVKVGEDKSINCVICLEEISKKMKGSEGVVLQMPCLHMFH 240
           MVP S+SAM+SMLKRVE EEI+KVG+ KSI+CVICLE+ISK+ KGSEGVVLQMPCLHMFH
Sbjct: 181 MVPTSDSAMKSMLKRVENEEIMKVGDYKSISCVICLEKISKEEKGSEGVVLQMPCLHMFH 240

Query: 241 EECIRTWLKTSHYCPTCRFSMPINNN 266
           EECIR WLKTSHYCPTCRFSM INNN
Sbjct: 241 EECIRKWLKTSHYCPTCRFSMTINNN 255

[Close]
BLAST of Cucsa.218660 vs. TrEMBL
Match: A0A0A0K7L0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G067560 PE=4 SV=1)

HSP 1 Score: 386.0 bits (990), Expect = 3.8e-104
Identity = 196/268 (73.13%), Postives = 223/268 (83.21%), Query Frame = 1 

Query: 1   MAEHNFDDCM-STGCFMGMSLRITDPDLSLQPQSQNQTPHNSPTFVKQINLKLKVEVKCQ 60
           MAE  F  C   +G ++GMSLRITDPDL  QPQSQ +TP NSPT VKQI+L  KVEVKCQ
Sbjct: 1   MAEQIFGPCRYGSGSYIGMSLRITDPDLRHQPQSQIRTPPNSPTLVKQIDLNFKVEVKCQ 60

Query: 61  H-FQADEEGD-TFASTLMIEHIVSHHPFPTFQLPVSVFRHGNRTLKRLLFQQFQIFRGII 120
           H FQA E G+ TFA+ L+ EHI SHHP PT QLPVS+F+HG++TLKRLLF++FQI+R II
Sbjct: 61  HYFQAGEGGNSTFATALLSEHISSHHPLPTLQLPVSIFKHGDKTLKRLLFREFQIYRAII 120

Query: 121 NIQLVADEIIEHWVKKEEDRENNSGVLLEEIYPLEITIELLLLRMIHAIDQPEETI-DQP 180
           NI+LV DEII+HWVKK  D EN++  + EEIYPLEITIELL+ +MIHAIDQP E + DQP
Sbjct: 121 NIELVVDEIIKHWVKKV-DEENSTSQVFEEIYPLEITIELLVYQMIHAIDQPHEIMMDQP 180

Query: 181 QVTMVPASESAMESMLKRVEKEEIVKVGEDKSINCVICLEEISKKMKGSEGVVLQMPCLH 240
           QV MVP SESAMESMLK+VE EEIVK G++KSINCVICLEEISK+ KGSE VVLQMPCLH
Sbjct: 181 QVMMVPTSESAMESMLKKVENEEIVKFGDNKSINCVICLEEISKEKKGSEAVVLQMPCLH 240

Query: 241 MFHEECIRTWLKTSHYCPTCRFSMPINN 265
           MFHEECIR WLK SHYCPTCRFSMP NN
Sbjct: 241 MFHEECIRKWLKRSHYCPTCRFSMPTNN 267

[Close]
BLAST of Cucsa.218660 vs. TrEMBL
Match: E5GCQ4_CUCME (Hypothetical zinc finger protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 352.4 bits (903), Expect = 4.7e-94
Identity = 184/268 (68.66%), Postives = 216/268 (80.60%), Query Frame = 1 

Query: 1   MAEHNFDDCMSTGCFMGMSLRITDPDLS-LQPQSQNQTPHNSPTFVKQINLKLKVEVKCQ 60
           MAE N D CMS G +MGMSLRITDPDL   QPQSQ QT  NSP  VKQI+L  K++VKCQ
Sbjct: 1   MAEQNLDACMSAGYYMGMSLRITDPDLRHRQPQSQIQTQPNSPALVKQIDLNFKLQVKCQ 60

Query: 61  HFQADEEGDTFASTLMIEHIVSHHPFPTFQLPVSVFRHGNRTLKRLLFQQFQIFRGIINI 120
           HF A EEG TFA+TL+ EHI+S   FP  QLP+S+F+ G++TLKRLLFQ+FQ+FRGI+N+
Sbjct: 61  HFGAGEEGSTFATTLLSEHIISQPTFPALQLPISIFKRGDKTLKRLLFQKFQMFRGIVNV 120

Query: 121 QLVADEIIEHWVKK-EEDRENNSGVLLEEIYPLEITIELLLLRMIHAIDQPEETIDQPQ- 180
           +LV DEII+HW++K EED+ENNS V   EIYPLEI IELL+ RMI AI      IDQPQ 
Sbjct: 121 ELVVDEIIKHWIRKVEEDQENNSRV-FAEIYPLEIRIELLVCRMIPAI------IDQPQE 180

Query: 181 VTMVPASESAMESMLKRVE-KEEIVKVGEDKSINCVICLEEISKKMKGSEGVVLQMPCLH 240
           V MVP S++AMESMLKRVE  EE++K+G+D SI+CVICLE+I K+ K S  VVLQMPCLH
Sbjct: 181 VMMVPTSDNAMESMLKRVENNEELMKLGDD-SIDCVICLEKIGKEEKRSGRVVLQMPCLH 240

Query: 241 MFHEECIRTWLKTSHYCPTCRFSMPINN 265
           MFHEECIR WLKTSH+CPTCRFSMPINN
Sbjct: 241 MFHEECIRKWLKTSHFCPTCRFSMPINN 260

[Close]
BLAST of Cucsa.218660 vs. TrEMBL
Match: E5GCQ3_CUCME (Hypothetical zinc finger protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 1.7e-88
Identity = 171/269 (63.57%), Postives = 215/269 (79.93%), Query Frame = 1 

Query: 1   MAEHNFDDCM-STGCFMGMSLRITDPDLSLQPQSQ-NQTPHNSPTFVKQINLKLKVEVKC 60
           MAE  F+ C   +G +MGMSLRITDP+   QP +Q +QT  +SPT V+QI LK KV++KC
Sbjct: 1   MAEEIFNICRYGSGSYMGMSLRITDPNPRHQPLNQIDQT--SSPTLVEQICLKFKVQLKC 60

Query: 61  QHFQADEEGDTFASTLMIEHIVSHHPFPTFQLPVSVFRHGNRTLKRLLFQQFQIFRGIIN 120
           QHFQ  E G+  ++TL+ EHI S H F TFQLP+S+F+HG++TLKR+LF++F+++  IIN
Sbjct: 61  QHFQVWEGGNGHSTTLVREHIRSQHSFATFQLPISIFKHGDKTLKRILFREFKMYGDIIN 120

Query: 121 IQLVADEIIEHWVKK---EEDRENNSGVLLEEIYPLEITIELLLLRMIHAIDQPEETIDQ 180
           I+L+A+EII+HWV+K   EED+ENNS VL ++IYPLEI I LL+ +MI A+      IDQ
Sbjct: 121 IELLANEIIKHWVRKVEEEEDQENNSNVLFKKIYPLEIMIRLLVSKMIRAVQPRLAMIDQ 180

Query: 181 PQVTMVPASESAMESMLKRVEKEEIVKVGEDKSINCVICLEEISKKMKGSEGVVLQMPCL 240
           P   MVP S+SA+ESMLKRVE EEI+K G+D+SINCV+CLEEISK+ KGSE  VLQMPCL
Sbjct: 181 P--LMVPTSDSAVESMLKRVENEEIMKSGDDESINCVVCLEEISKEEKGSETTVLQMPCL 240

Query: 241 HMFHEECIRTWLKTSHYCPTCRFSMPINN 265
           HMFHEECIR WLKTSHYCPTCRFSMPI+N
Sbjct: 241 HMFHEECIRKWLKTSHYCPTCRFSMPIDN 265

[Close]
BLAST of Cucsa.218660 vs. TAIR10
Match: AT1G18760.1 (AT1G18760.1 Zinc finger, C3HC4 type (RING finger) family protein)

HSP 1 Score: 65.1 bits (157), Expect = 7.6e-11
Identity = 35/117 (29.91%), Postives = 60/117 (51.28%), Query Frame = 1 

Query: 150 PLEITIELLLLRMIHAIDQPEETI-----DQPQVTMVPASESAMESMLKRVEKEEIVKVG 209
           P+E   E+    +    DQ EE +     +   +++ PA++  + S+ +++ K+      
Sbjct: 114 PIEEEYEIEEEDLSEEEDQIEEAVRASLEETNNISLRPANKLVVNSLARKIYKKTT---- 173

Query: 210 EDKSINCVICLEEISKKMKGSEGVVLQMPCLHMFHEECIRTWLKTSHYCPTCRFSMP 262
              +  C ICLEE +   K     V+ +PC H F +EC+ TW +T+H CP CRF +P
Sbjct: 174 -SSTERCTICLEEFNDGTK-----VMTLPCGHEFDDECVLTWFETNHDCPLCRFKLP 220

[Close]
BLAST of Cucsa.218660 vs. TAIR10
Match: AT1G74620.1 (AT1G74620.1 RING/U-box superfamily protein)

HSP 1 Score: 55.8 bits (133), Expect = 4.6e-08
Identity = 27/78 (34.62%), Postives = 43/78 (55.13%), Query Frame = 1 

Query: 184 SESAMESMLKRVEKEEIVKVGEDKSINCVICLEEISKKMKGSEGVVLQMPCLHMFHEECI 243
           +  A E++L        + V   +   C IC+E+    ++GS  +V ++PC H FH +CI
Sbjct: 156 ANKAAENLLIDSYCYNYLNVATTEENGCAICMEDY---IEGSS-IVAKLPCDHEFHGDCI 215

Query: 244 RTWLKTSHYCPTCRFSMP 262
             WL+ +H CP CR S+P
Sbjct: 216 NKWLQLNHMCPLCRSSIP 229

[Close]
BLAST of Cucsa.218660 vs. TAIR10
Match: AT3G55530.1 (AT3G55530.1 RING/U-box superfamily protein)

HSP 1 Score: 55.1 bits (131), Expect = 7.8e-08
Identity = 47/208 (22.60%), Postives = 77/208 (37.02%), Query Frame = 1 

Query: 52  LKVEVKCQHFQADEEGDTFASTLMIEHI-VSHHPFPTFQLPVSVFRHGNRTLKRLLFQQF 111
           L++   CQ  QA  +    A++ +  H  +  H  P+  L       G R    LL ++F
Sbjct: 77  LRMYATCQQLQAHAQAQAAAASGLFSHTELRLHVPPSIALATRGRLQGLRLQLALLDREF 136

Query: 112 QIFRGIINIQLVADEIIEHWVKKEEDRENNSGVLLEEIYPLEITIELLLLRMIHAIDQPE 171
                        D   E     + D  + + +  EEI  L +                 
Sbjct: 137 D------------DLDYETLRALDSDNVSTTSMSEEEINALPV--------------HKY 196

Query: 172 ETIDQPQVTMVPASESAMESMLKRVEKEEIVKVGEDKSINCVICLEEISKKMKGSEGVVL 231
           + +D      +    S   S  K ++     K G +  + C +CLE+++        +V 
Sbjct: 197 KVLDPENGCSLAKQASTSSSAEKMLDSANESKKGTEDELTCSVCLEQVTVGE-----IVR 253

Query: 232 QMPCLHMFHEECIRTWLKTSHYCPTCRF 259
            +PCLH FH  CI  WL+    CP C+F
Sbjct: 257 TLPCLHQFHAGCIDPWLRQQGTCPVCKF 253

[Close]
BLAST of Cucsa.218660 vs. TAIR10
Match: AT5G54990.1 (AT5G54990.1 RING/U-box superfamily protein)

HSP 1 Score: 52.8 bits (125), Expect = 3.9e-07
Identity = 21/50 (42.00%), Postives = 32/50 (64.00%), Query Frame = 1 

Query: 208 SINCVICLEEISKKMKGSEGVVLQMPCLHMFHEECIRTWLKTSHYCPTCR 258
           +++C ICL E+S  +       +++PC H+FH +CI TWLK +  CP CR
Sbjct: 171 ALDCPICLTELSSGVSR-----MKLPCSHVFHRDCIMTWLKKNPSCPICR 215

[Close]
BLAST of Cucsa.218660 vs. TAIR10
Match: AT4G28370.1 (AT4G28370.1 RING/U-box superfamily protein)

HSP 1 Score: 50.8 bits (120), Expect = 1.5e-06
Identity = 21/55 (38.18%), Postives = 32/55 (58.18%), Query Frame = 1 

Query: 207 KSINCVICLEEISKKMKGSEGVVLQMPCLHMFHEECIRTWLKTSHYCPTCRFSMP 262
           ++ +CVIC+  I  +   S+ +V   PC H FH  C++ W+     CPTCR S+P
Sbjct: 508 RTTDCVICMTAIDLRQHTSDCMVT--PCEHFFHSGCLQRWMDIKMECPTCRRSLP 560

[Close]
BLAST of Cucsa.218660 vs. NCBI nr
Match: gi|778730182|ref|XP_011659721.1| (PREDICTED: E3 ubiquitin-protein ligase SDIR1-like [Cucumis sativus])

HSP 1 Score: 543.9 bits (1400), Expect = 1.6e-151
Identity = 265/265 (100.00%), Postives = 265/265 (100.00%), Query Frame = 1 

Query: 1   MAEHNFDDCMSTGCFMGMSLRITDPDLSLQPQSQNQTPHNSPTFVKQINLKLKVEVKCQH 60
           MAEHNFDDCMSTGCFMGMSLRITDPDLSLQPQSQNQTPHNSPTFVKQINLKLKVEVKCQH
Sbjct: 1   MAEHNFDDCMSTGCFMGMSLRITDPDLSLQPQSQNQTPHNSPTFVKQINLKLKVEVKCQH 60

Query: 61  FQADEEGDTFASTLMIEHIVSHHPFPTFQLPVSVFRHGNRTLKRLLFQQFQIFRGIINIQ 120
           FQADEEGDTFASTLMIEHIVSHHPFPTFQLPVSVFRHGNRTLKRLLFQQFQIFRGIINIQ
Sbjct: 61  FQADEEGDTFASTLMIEHIVSHHPFPTFQLPVSVFRHGNRTLKRLLFQQFQIFRGIINIQ 120

Query: 121 LVADEIIEHWVKKEEDRENNSGVLLEEIYPLEITIELLLLRMIHAIDQPEETIDQPQVTM 180
           LVADEIIEHWVKKEEDRENNSGVLLEEIYPLEITIELLLLRMIHAIDQPEETIDQPQVTM
Sbjct: 121 LVADEIIEHWVKKEEDRENNSGVLLEEIYPLEITIELLLLRMIHAIDQPEETIDQPQVTM 180

Query: 181 VPASESAMESMLKRVEKEEIVKVGEDKSINCVICLEEISKKMKGSEGVVLQMPCLHMFHE 240
           VPASESAMESMLKRVEKEEIVKVGEDKSINCVICLEEISKKMKGSEGVVLQMPCLHMFHE
Sbjct: 181 VPASESAMESMLKRVEKEEIVKVGEDKSINCVICLEEISKKMKGSEGVVLQMPCLHMFHE 240

Query: 241 ECIRTWLKTSHYCPTCRFSMPINNN 266
           ECIRTWLKTSHYCPTCRFSMPINNN
Sbjct: 241 ECIRTWLKTSHYCPTCRFSMPINNN 265

[Close]
BLAST of Cucsa.218660 vs. NCBI nr
Match: gi|700188567|gb|KGN43800.1| (hypothetical protein Csa_7G067550 [Cucumis sativus])

HSP 1 Score: 394.0 bits (1011), Expect = 2.0e-106
Identity = 197/266 (74.06%), Postives = 226/266 (84.96%), Query Frame = 1 

Query: 1   MAEHNFDDCMSTGCFMGMSLRITDPDLSLQPQSQNQTPHNSPTFVKQINLKLKVEVKCQH 60
           MAE NFDDC S G +MGMSLRITDP          QT  NSPT VKQI+L  KVEVKCQH
Sbjct: 1   MAEQNFDDCTS-GYYMGMSLRITDPI---------QTRSNSPTSVKQIDLNFKVEVKCQH 60

Query: 61  FQADEEGDTFASTLMIEHIVSHHPFPTFQLPVSVFRHGNRTLKRLLFQQFQIFRGIINIQ 120
           FQA EE  TFA+T + EHI++H PFP  QLPVS+F+HG++TLKRLLFQ+FQ+FR IINI+
Sbjct: 61  FQAGEEDTTFATTFLSEHIIAHQPFPALQLPVSIFKHGDKTLKRLLFQKFQMFRAIINIE 120

Query: 121 LVADEIIEHWVKK-EEDRENNSGVLLEEIYPLEITIELLLLRMIHAIDQPEETIDQPQVT 180
           LV D+II+HWVKK E+D+ENNSGV  EEIYPLEITIE+L+L+MI A+DQP+ETIDQPQV 
Sbjct: 121 LVTDQIIKHWVKKVEDDKENNSGV-FEEIYPLEITIEVLVLQMIDAVDQPQETIDQPQVR 180

Query: 181 MVPASESAMESMLKRVEKEEIVKVGEDKSINCVICLEEISKKMKGSEGVVLQMPCLHMFH 240
           MVP S+SAM+SMLKRVE EEI+KVG+ KSI+CVICLE+ISK+ KGSEGVVLQMPCLHMFH
Sbjct: 181 MVPTSDSAMKSMLKRVENEEIMKVGDYKSISCVICLEKISKEEKGSEGVVLQMPCLHMFH 240

Query: 241 EECIRTWLKTSHYCPTCRFSMPINNN 266
           EECIR WLKTSHYCPTCRFSM INNN
Sbjct: 241 EECIRKWLKTSHYCPTCRFSMTINNN 255

[Close]
BLAST of Cucsa.218660 vs. NCBI nr
Match: gi|700188568|gb|KGN43801.1| (hypothetical protein Csa_7G067560 [Cucumis sativus])

HSP 1 Score: 386.0 bits (990), Expect = 5.5e-104
Identity = 196/268 (73.13%), Postives = 223/268 (83.21%), Query Frame = 1 

Query: 1   MAEHNFDDCM-STGCFMGMSLRITDPDLSLQPQSQNQTPHNSPTFVKQINLKLKVEVKCQ 60
           MAE  F  C   +G ++GMSLRITDPDL  QPQSQ +TP NSPT VKQI+L  KVEVKCQ
Sbjct: 1   MAEQIFGPCRYGSGSYIGMSLRITDPDLRHQPQSQIRTPPNSPTLVKQIDLNFKVEVKCQ 60

Query: 61  H-FQADEEGD-TFASTLMIEHIVSHHPFPTFQLPVSVFRHGNRTLKRLLFQQFQIFRGII 120
           H FQA E G+ TFA+ L+ EHI SHHP PT QLPVS+F+HG++TLKRLLF++FQI+R II
Sbjct: 61  HYFQAGEGGNSTFATALLSEHISSHHPLPTLQLPVSIFKHGDKTLKRLLFREFQIYRAII 120

Query: 121 NIQLVADEIIEHWVKKEEDRENNSGVLLEEIYPLEITIELLLLRMIHAIDQPEETI-DQP 180
           NI+LV DEII+HWVKK  D EN++  + EEIYPLEITIELL+ +MIHAIDQP E + DQP
Sbjct: 121 NIELVVDEIIKHWVKKV-DEENSTSQVFEEIYPLEITIELLVYQMIHAIDQPHEIMMDQP 180

Query: 181 QVTMVPASESAMESMLKRVEKEEIVKVGEDKSINCVICLEEISKKMKGSEGVVLQMPCLH 240
           QV MVP SESAMESMLK+VE EEIVK G++KSINCVICLEEISK+ KGSE VVLQMPCLH
Sbjct: 181 QVMMVPTSESAMESMLKKVENEEIVKFGDNKSINCVICLEEISKEKKGSEAVVLQMPCLH 240

Query: 241 MFHEECIRTWLKTSHYCPTCRFSMPINN 265
           MFHEECIR WLK SHYCPTCRFSMP NN
Sbjct: 241 MFHEECIRKWLKRSHYCPTCRFSMPTNN 267

[Close]
BLAST of Cucsa.218660 vs. NCBI nr
Match: gi|659111005|ref|XP_008455526.1| (PREDICTED: uncharacterized protein LOC103495678 [Cucumis melo])

HSP 1 Score: 352.4 bits (903), Expect = 6.7e-94
Identity = 184/268 (68.66%), Postives = 216/268 (80.60%), Query Frame = 1 

Query: 1   MAEHNFDDCMSTGCFMGMSLRITDPDLS-LQPQSQNQTPHNSPTFVKQINLKLKVEVKCQ 60
           MAE N D CMS G +MGMSLRITDPDL   QPQSQ QT  NSP  VKQI+L  K++VKCQ
Sbjct: 1   MAEQNLDACMSAGYYMGMSLRITDPDLRHRQPQSQIQTQPNSPALVKQIDLNFKLQVKCQ 60

Query: 61  HFQADEEGDTFASTLMIEHIVSHHPFPTFQLPVSVFRHGNRTLKRLLFQQFQIFRGIINI 120
           HF A EEG TFA+TL+ EHI+S   FP  QLP+S+F+ G++TLKRLLFQ+FQ+FRGI+N+
Sbjct: 61  HFGAGEEGSTFATTLLSEHIISQPTFPALQLPISIFKRGDKTLKRLLFQKFQMFRGIVNV 120

Query: 121 QLVADEIIEHWVKK-EEDRENNSGVLLEEIYPLEITIELLLLRMIHAIDQPEETIDQPQ- 180
           +LV DEII+HW++K EED+ENNS V   EIYPLEI IELL+ RMI AI      IDQPQ 
Sbjct: 121 ELVVDEIIKHWIRKVEEDQENNSRV-FAEIYPLEIRIELLVCRMIPAI------IDQPQE 180

Query: 181 VTMVPASESAMESMLKRVE-KEEIVKVGEDKSINCVICLEEISKKMKGSEGVVLQMPCLH 240
           V MVP S++AMESMLKRVE  EE++K+G+D SI+CVICLE+I K+ K S  VVLQMPCLH
Sbjct: 181 VMMVPTSDNAMESMLKRVENNEELMKLGDD-SIDCVICLEKIGKEEKRSGRVVLQMPCLH 240

Query: 241 MFHEECIRTWLKTSHYCPTCRFSMPINN 265
           MFHEECIR WLKTSH+CPTCRFSMPINN
Sbjct: 241 MFHEECIRKWLKTSHFCPTCRFSMPINN 260

[Close]
BLAST of Cucsa.218660 vs. NCBI nr
Match: gi|659111003|ref|XP_008455525.1| (PREDICTED: uncharacterized protein LOC103495676 [Cucumis melo])

HSP 1 Score: 334.0 bits (855), Expect = 2.5e-88
Identity = 171/269 (63.57%), Postives = 215/269 (79.93%), Query Frame = 1 

Query: 1   MAEHNFDDCM-STGCFMGMSLRITDPDLSLQPQSQ-NQTPHNSPTFVKQINLKLKVEVKC 60
           MAE  F+ C   +G +MGMSLRITDP+   QP +Q +QT  +SPT V+QI LK KV++KC
Sbjct: 1   MAEEIFNICRYGSGSYMGMSLRITDPNPRHQPLNQIDQT--SSPTLVEQICLKFKVQLKC 60

Query: 61  QHFQADEEGDTFASTLMIEHIVSHHPFPTFQLPVSVFRHGNRTLKRLLFQQFQIFRGIIN 120
           QHFQ  E G+  ++TL+ EHI S H F TFQLP+S+F+HG++TLKR+LF++F+++  IIN
Sbjct: 61  QHFQVWEGGNGHSTTLVREHIRSQHSFATFQLPISIFKHGDKTLKRILFREFKMYGDIIN 120

Query: 121 IQLVADEIIEHWVKK---EEDRENNSGVLLEEIYPLEITIELLLLRMIHAIDQPEETIDQ 180
           I+L+A+EII+HWV+K   EED+ENNS VL ++IYPLEI I LL+ +MI A+      IDQ
Sbjct: 121 IELLANEIIKHWVRKVEEEEDQENNSNVLFKKIYPLEIMIRLLVSKMIRAVQPRLAMIDQ 180

Query: 181 PQVTMVPASESAMESMLKRVEKEEIVKVGEDKSINCVICLEEISKKMKGSEGVVLQMPCL 240
           P   MVP S+SA+ESMLKRVE EEI+K G+D+SINCV+CLEEISK+ KGSE  VLQMPCL
Sbjct: 181 P--LMVPTSDSAVESMLKRVENEEIMKSGDDESINCVVCLEEISKEEKGSETTVLQMPCL 240

Query: 241 HMFHEECIRTWLKTSHYCPTCRFSMPINN 265
           HMFHEECIR WLKTSHYCPTCRFSMPI+N
Sbjct: 241 HMFHEECIRKWLKTSHYCPTCRFSMPIDN 265

The following BLAST results are available for this feature:
BLAST of Cucsa.218660 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SDIR1_ARATH1.4e-0622.60E3 ubiquitin-protein ligase SDIR1 OS=Arabidopsis thaliana GN=SDIR1 PE=1 SV=1[more]
AMFR_HUMAN9.0e-0633.33E3 ubiquitin-protein ligase AMFR OS=Homo sapiens GN=AMFR PE=1 SV=2[more]
BLAST of Cucsa.218660 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K493_CUCSA1.1e-151100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G067540 PE=4 SV=1[more]
A0A0A0K2A1_CUCSA1.4e-10674.06Uncharacterized protein OS=Cucumis sativus GN=Csa_7G067550 PE=4 SV=1[more]
A0A0A0K7L0_CUCSA3.8e-10473.13Uncharacterized protein OS=Cucumis sativus GN=Csa_7G067560 PE=4 SV=1[more]
E5GCQ4_CUCME4.7e-9468.66Hypothetical zinc finger protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E5GCQ3_CUCME1.7e-8863.57Hypothetical zinc finger protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
BLAST of Cucsa.218660 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G18760.17.6e-1129.91 Zinc finger, C3HC4 type (RING finger) family protein[more]
AT1G74620.14.6e-0834.62 RING/U-box superfamily protein[more]
AT3G55530.17.8e-0822.60 RING/U-box superfamily protein[more]
AT5G54990.13.9e-0742.00 RING/U-box superfamily protein[more]
AT4G28370.11.5e-0638.18 RING/U-box superfamily protein[more]
BLAST of Cucsa.218660 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778730182|ref|XP_011659721.1|1.6e-151100.00PREDICTED: E3 ubiquitin-protein ligase SDIR1-like [Cucumis sativus][more]
gi|700188567|gb|KGN43800.1|2.0e-10674.06hypothetical protein Csa_7G067550 [Cucumis sativus][more]
gi|700188568|gb|KGN43801.1|5.5e-10473.13hypothetical protein Csa_7G067560 [Cucumis sativus][more]
gi|659111005|ref|XP_008455526.1|6.7e-9468.66PREDICTED: uncharacterized protein LOC103495678 [Cucumis melo][more]
gi|659111003|ref|XP_008455525.1|2.5e-8863.57PREDICTED: uncharacterized protein LOC103495676 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR011016Znf_RING-CH
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.218660.1Cucsa.218660.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 210..257
score: 3.9
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 211..256
score: 5.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 211..257
score: 12
IPR011016Zinc finger, RING-CH-typeSMARTSM00744ringv_2coord: 210..257
score: 7.
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 202..261
score: 2.9
NoneNo IPR availablePANTHERPTHR22763RING ZINC FINGER PROTEINcoord: 170..265
score: 1.9E-19coord: 106..127
score: 1.9
NoneNo IPR availablePANTHERPTHR22763:SF78E3 UBIQUITIN-PROTEIN LIGASE RHA2Acoord: 170..265
score: 1.9E-19coord: 106..127
score: 1.9
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 198..262
score: 1.44

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.218660Csa7G067540Cucumber (Chinese Long) v2cgycuB322
Cucsa.218660MELO3C018566Melon (DHL92) v3.5.1cgymeB379
Cucsa.218660CSPI07G06330Wild cucumber (PI 183967)cgycpiB336
Cucsa.218660Lsi03G006560Bottle gourd (USVL1VR-Ls)cgylsiB364
Cucsa.218660Cp4.1LG15g04030Cucurbita pepo (Zucchini)cgycpeB0594
Cucsa.218660MELO3C028580.2Melon (DHL92) v3.6.1cgymedB377
Cucsa.218660CsaV3_7G007310Cucumber (Chinese Long) v3cgycucB342
Cucsa.218660Bhi05G000815Wax gourdcgywgoB450
Cucsa.218660Carg16308Silver-seed gourdcarcgyB0524
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.218660Wax gourdcgywgoB443
Cucsa.218660Wax gourdcgywgoB445
Cucsa.218660Cucumber (Gy14) v1cgycgyB119
Cucsa.218660Cucurbita maxima (Rimu)cgycmaB0620
Cucsa.218660Cucurbita maxima (Rimu)cgycmaB0622
Cucsa.218660Cucurbita maxima (Rimu)cgycmaB0624
Cucsa.218660Cucurbita maxima (Rimu)cgycmaB0627
Cucsa.218660Cucurbita maxima (Rimu)cgycmaB0629
Cucsa.218660Cucurbita moschata (Rifu)cgycmoB0623
Cucsa.218660Cucurbita moschata (Rifu)cgycmoB0624
Cucsa.218660Cucurbita moschata (Rifu)cgycmoB0627
Cucsa.218660Cucurbita moschata (Rifu)cgycmoB0629
Cucsa.218660Cucurbita moschata (Rifu)cgycmoB0632
Cucsa.218660Wild cucumber (PI 183967)cgycpiB335
Cucsa.218660Melon (DHL92) v3.5.1cgymeB380
Cucsa.218660Melon (DHL92) v3.5.1cgymeB383
Cucsa.218660Watermelon (Charleston Gray)cgywcgB391
Cucsa.218660Watermelon (Charleston Gray)cgywcgB393
Cucsa.218660Watermelon (Charleston Gray)cgywcgB396
Cucsa.218660Watermelon (Charleston Gray)cgywcgB399
Cucsa.218660Watermelon (97103) v1cgywmB415
Cucsa.218660Watermelon (97103) v1cgywmB421
Cucsa.218660Watermelon (97103) v1cgywmB422
Cucsa.218660Cucurbita pepo (Zucchini)cgycpeB0596
Cucsa.218660Cucurbita pepo (Zucchini)cgycpeB0599
Cucsa.218660Cucurbita pepo (Zucchini)cgycpeB0601
Cucsa.218660Cucurbita pepo (Zucchini)cgycpeB0602
Cucsa.218660Bottle gourd (USVL1VR-Ls)cgylsiB366
Cucsa.218660Bottle gourd (USVL1VR-Ls)cgylsiB367
Cucsa.218660Melon (DHL92) v3.6.1cgymedB381
Cucsa.218660Silver-seed gourdcarcgyB0221
Cucsa.218660Silver-seed gourdcarcgyB0338
Cucsa.218660Silver-seed gourdcarcgyB0435
Cucsa.218660Silver-seed gourdcarcgyB0824
Cucsa.218660Silver-seed gourdcarcgyB0825
Cucsa.218660Watermelon (97103) v2cgywmbB393
Cucsa.218660Watermelon (97103) v2cgywmbB395
Cucsa.218660Watermelon (97103) v2cgywmbB399