CsaV3_7G007310 (gene) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.TTAATCTTTTATTGGTTTCCTAATGGAATTCCGTTTTCTAAAACCTTAAGGAAATTGGAAAAGTCTCTCTTATATATATCTTTCATTCTATTCTCATATTTTCACATCTTCTCATCGCTATAACTCTCTCCACTTGGTCTTCGTCTTCATCTCAACCGCAATGGCCGAACATAACTTTGATGATTGTATGTCTACTGGTTGCTTCATGGGTATGTCACTAAGAATTACCGATCCCGACTTGAGCCTTCAACCACAAAGCCAAAATCAAACTCCACACAACTCCCCAACATTTGTCAAACAGATCAACCTGAAGTTAAAAGTTGAAGTCAAATGCCAACACTTTCAAGCAGATGAAGAAGGCGACACATTTGCATCAACTTTAATGATTGAACACATAGTTTCACACCATCCCTTTCCAACTTTCCAACTTCCTGTCTCCGTCTTCAGGCATGGTAACAGAACTTTGAAGCGATTACTTTTTCAGCAGTTTCAGATATTTAGAGGCATCATCAACATTCAACTTGTGGCTGACGAAATAATAGAACACTGGGTTAAAAAAGAAGAAGATAGAGAGAATAATTCTGGGGTACTGCTTGAAGAGATATATCCTCTCGAAATTACGATAGAGTTGCTGCTTCTTCGAATGATTCATGCAATAGACCAACCAGAAGAAACGATAGATCAACCACAAGTAACGATGGTTCCAGCAAGCGAGAGTGCTATGGAGAGTATGCTGAAGAGAGTGGAAAAGGAGGAGATAGTGAAAGTGGGTGAGGACAAAAGCATTAATTGTGTTATCTGTTTGGAGGAAATTAGTAAAAAGATGAAAGGAAGTGAGGGAGTGGTGTTACAAATGCCATGCTTGCATATGTTTCATGAAGAATGTATAAGGACGTGGTTGAAGACAAGTCATTACTGCCCAACTTGTAGATTTTCAATGCCTATAAACAACAATTGA ATGGCCGAACATAACTTTGATGATTGTATGTCTACTGGTTGCTTCATGGGTATGTCACTAAGAATTACCGATCCCGACTTGAGCCTTCAACCACAAAGCCAAAATCAAACTCCACACAACTCCCCAACATTTGTCAAACAGATCAACCTGAAGTTAAAAGTTGAAGTCAAATGCCAACACTTTCAAGCAGATGAAGAAGGCGACACATTTGCATCAACTTTAATGATTGAACACATAGTTTCACACCATCCCTTTCCAACTTTCCAACTTCCTGTCTCCGTCTTCAGGCATGGTAACAGAACTTTGAAGCGATTACTTTTTCAGCAGTTTCAGATATTTAGAGGCATCATCAACATTCAACTTGTGGCTGACGAAATAATAGAACACTGGGTTAAAAAAGAAGAAGATAGAGAGAATAATTCTGGGGTACTGCTTGAAGAGATATATCCTCTCGAAATTACGATAGAGTTGCTGCTTCTTCGAATGATTCATGCAATAGACCAACCAGAAGAAACGATAGATCAACCACAAGTAACGATGGTTCCAGCAAGCGAGAGTGCTATGGAGAGTATGCTGAAGAGAGTGGAAAAGGAGGAGATAGTGAAAGTGGGTGAGGACAAAAGCATTAATTGTGTTATCTGTTTGGAGGAAATTAGTAAAAAGATGAAAGGAAGTGAGGGAGTGGTGTTACAAATGCCATGCTTGCATATGTTTCATGAAGAATGTATAAGGACGTGGTTGAAGACAAGTCATTACTGCCCAACTTGTAGATTTTCAATGCCTATAAACAACAATTGA ATGGCCGAACATAACTTTGATGATTGTATGTCTACTGGTTGCTTCATGGGTATGTCACTAAGAATTACCGATCCCGACTTGAGCCTTCAACCACAAAGCCAAAATCAAACTCCACACAACTCCCCAACATTTGTCAAACAGATCAACCTGAAGTTAAAAGTTGAAGTCAAATGCCAACACTTTCAAGCAGATGAAGAAGGCGACACATTTGCATCAACTTTAATGATTGAACACATAGTTTCACACCATCCCTTTCCAACTTTCCAACTTCCTGTCTCCGTCTTCAGGCATGGTAACAGAACTTTGAAGCGATTACTTTTTCAGCAGTTTCAGATATTTAGAGGCATCATCAACATTCAACTTGTGGCTGACGAAATAATAGAACACTGGGTTAAAAAAGAAGAAGATAGAGAGAATAATTCTGGGGTACTGCTTGAAGAGATATATCCTCTCGAAATTACGATAGAGTTGCTGCTTCTTCGAATGATTCATGCAATAGACCAACCAGAAGAAACGATAGATCAACCACAAGTAACGATGGTTCCAGCAAGCGAGAGTGCTATGGAGAGTATGCTGAAGAGAGTGGAAAAGGAGGAGATAGTGAAAGTGGGTGAGGACAAAAGCATTAATTGTGTTATCTGTTTGGAGGAAATTAGTAAAAAGATGAAAGGAAGTGAGGGAGTGGTGTTACAAATGCCATGCTTGCATATGTTTCATGAAGAATGTATAAGGACGTGGTTGAAGACAAGTCATTACTGCCCAACTTGTAGATTTTCAATGCCTATAAACAACAATTGA MAEHNFDDCMSTGCFMGMSLRITDPDLSLQPQSQNQTPHNSPTFVKQINLKLKVEVKCQHFQADEEGDTFASTLMIEHIVSHHPFPTFQLPVSVFRHGNRTLKRLLFQQFQIFRGIINIQLVADEIIEHWVKKEEDRENNSGVLLEEIYPLEITIELLLLRMIHAIDQPEETIDQPQVTMVPASESAMESMLKRVEKEEIVKVGEDKSINCVICLEEISKKMKGSEGVVLQMPCLHMFHEECIRTWLKTSHYCPTCRFSMPINNN
BLAST of CsaV3_7G007310 vs. NCBI nr
Match: XP_011659721.1 (PREDICTED: E3 ubiquitin-protein ligase SDIR1-like [Cucumis sativus] >KGN43799.1 hypothetical protein Csa_7G067540 [Cucumis sativus]) HSP 1 Score: 540.0 bits (1390), Expect = 4.4e-150 Identity = 265/265 (100.00%), Postives = 265/265 (100.00%), Query Frame = 0
BLAST of CsaV3_7G007310 vs. NCBI nr
Match: KGN43800.1 (hypothetical protein Csa_7G067550 [Cucumis sativus]) HSP 1 Score: 390.6 bits (1002), Expect = 4.3e-105 Identity = 197/266 (74.06%), Postives = 226/266 (84.96%), Query Frame = 0
BLAST of CsaV3_7G007310 vs. NCBI nr
Match: KGN43801.1 (hypothetical protein Csa_7G067560 [Cucumis sativus]) HSP 1 Score: 382.5 bits (981), Expect = 1.2e-102 Identity = 196/268 (73.13%), Postives = 223/268 (83.21%), Query Frame = 0
BLAST of CsaV3_7G007310 vs. NCBI nr
Match: ADN34253.1 (hypothetical zinc finger protein [Cucumis melo subsp. melo]) HSP 1 Score: 349.4 bits (895), Expect = 1.1e-92 Identity = 184/268 (68.66%), Postives = 216/268 (80.60%), Query Frame = 0
BLAST of CsaV3_7G007310 vs. NCBI nr
Match: ADN34252.1 (hypothetical zinc finger protein [Cucumis melo subsp. melo]) HSP 1 Score: 330.5 bits (846), Expect = 5.3e-87 Identity = 171/269 (63.57%), Postives = 215/269 (79.93%), Query Frame = 0
BLAST of CsaV3_7G007310 vs. TAIR10
Match: AT5G59550.1 (zinc finger (C3HC4-type RING finger) family protein) HSP 1 Score: 62.4 bits (150), Expect = 4.9e-10 Identity = 34/84 (40.48%), Postives = 47/84 (55.95%), Query Frame = 0
BLAST of CsaV3_7G007310 vs. TAIR10
Match: AT3G46620.1 (zinc finger (C3HC4-type RING finger) family protein) HSP 1 Score: 61.6 bits (148), Expect = 8.3e-10 Identity = 34/80 (42.50%), Postives = 44/80 (55.00%), Query Frame = 0
BLAST of CsaV3_7G007310 vs. TAIR10
Match: AT3G58720.2 (RING/U-box superfamily protein) HSP 1 Score: 60.8 bits (146), Expect = 1.4e-09 Identity = 27/55 (49.09%), Postives = 31/55 (56.36%), Query Frame = 0
BLAST of CsaV3_7G007310 vs. TAIR10
Match: AT3G13228.1 (RING/U-box superfamily protein) HSP 1 Score: 60.5 bits (145), Expect = 1.9e-09 Identity = 28/80 (35.00%), Postives = 49/80 (61.25%), Query Frame = 0
BLAST of CsaV3_7G007310 vs. TAIR10
Match: AT3G19950.1 (RING/U-box superfamily protein) HSP 1 Score: 59.3 bits (142), Expect = 4.1e-09 Identity = 28/83 (33.73%), Postives = 51/83 (61.45%), Query Frame = 0
BLAST of CsaV3_7G007310 vs. Swiss-Prot
Match: sp|Q940T5|RDUF2_ARATH (E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 SV=1) HSP 1 Score: 62.4 bits (150), Expect = 8.8e-09 Identity = 34/84 (40.48%), Postives = 47/84 (55.95%), Query Frame = 0
BLAST of CsaV3_7G007310 vs. Swiss-Prot
Match: sp|Q9SNB6|RDUF1_ARATH (E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana OX=3702 GN=RDUF1 PE=1 SV=1) HSP 1 Score: 61.6 bits (148), Expect = 1.5e-08 Identity = 34/80 (42.50%), Postives = 44/80 (55.00%), Query Frame = 0
BLAST of CsaV3_7G007310 vs. Swiss-Prot
Match: sp|Q8LPN7|RNG1L_ARATH (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1) HSP 1 Score: 59.3 bits (142), Expect = 7.5e-08 Identity = 28/83 (33.73%), Postives = 51/83 (61.45%), Query Frame = 0
BLAST of CsaV3_7G007310 vs. Swiss-Prot
Match: sp|Q3T0W3|RN181_BOVIN (E3 ubiquitin-protein ligase RNF181 OS=Bos taurus OX=9913 GN=RNF181 PE=2 SV=1) HSP 1 Score: 58.2 bits (139), Expect = 1.7e-07 Identity = 26/84 (30.95%), Postives = 46/84 (54.76%), Query Frame = 0
BLAST of CsaV3_7G007310 vs. Swiss-Prot
Match: sp|Q9P0P0|RN181_HUMAN (E3 ubiquitin-protein ligase RNF181 OS=Homo sapiens OX=9606 GN=RNF181 PE=1 SV=1) HSP 1 Score: 58.2 bits (139), Expect = 1.7e-07 Identity = 25/84 (29.76%), Postives = 46/84 (54.76%), Query Frame = 0
BLAST of CsaV3_7G007310 vs. TrEMBL
Match: tr|A0A0A0K493|A0A0A0K493_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G067540 PE=4 SV=1) HSP 1 Score: 540.0 bits (1390), Expect = 2.9e-150 Identity = 265/265 (100.00%), Postives = 265/265 (100.00%), Query Frame = 0
BLAST of CsaV3_7G007310 vs. TrEMBL
Match: tr|A0A0A0K2A1|A0A0A0K2A1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G067550 PE=4 SV=1) HSP 1 Score: 390.6 bits (1002), Expect = 2.9e-105 Identity = 197/266 (74.06%), Postives = 226/266 (84.96%), Query Frame = 0
BLAST of CsaV3_7G007310 vs. TrEMBL
Match: tr|A0A0A0K7L0|A0A0A0K7L0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G067560 PE=4 SV=1) HSP 1 Score: 382.5 bits (981), Expect = 7.8e-103 Identity = 196/268 (73.13%), Postives = 223/268 (83.21%), Query Frame = 0
BLAST of CsaV3_7G007310 vs. TrEMBL
Match: tr|E5GCQ4|E5GCQ4_CUCME (Hypothetical zinc finger protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1) HSP 1 Score: 349.4 bits (895), Expect = 7.3e-93 Identity = 184/268 (68.66%), Postives = 216/268 (80.60%), Query Frame = 0
BLAST of CsaV3_7G007310 vs. TrEMBL
Match: tr|E5GCQ3|E5GCQ3_CUCME (Hypothetical zinc finger protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1) HSP 1 Score: 330.5 bits (846), Expect = 3.5e-87 Identity = 171/269 (63.57%), Postives = 215/269 (79.93%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |