Cucsa.217840 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.217840
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	RNA-binding CRS1 / YhbY (CRM) domain protein
Location	scaffold01658 : 77332 .. 81080 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTTCTTGATTTCCCTTTCATCTCCCTTAGGGATTATTTAAAAAACGACTCTTTCCTAGGAATTTATTGATTTACTTTACGACCATGCCTCGCTGCCGCGGGTTATCTATCATCGCCTTTTCAAGGTACGTTCTTCATCTCTAGAAATCTCATGGGTTTCATTCAATGGTTTTGAAATTGAATACATTTCCTCATTTATCAAATTCATCTCAACAGTGTGTATCGTCTTGTTTAAAGTAGATTTCAGGGTTGTCTACGAGTTTTTCCATCTGTTGTGTACACATTTTCCCTTTGGAAAGCATATGGAATTGGATGATTGTGGTATGGTGTTTTTGCAGGGGTTCATTGTTTGGATTCATTCCTCTGATTAGAAATGTATCACCTCTATCTTTATTGAGCATACCCACATCATTTGAGCAGTCCTCACATGGAAGTTGGGAGCATCAAGCAAGTAGTTGTATAGTGAAGTCTCTCAACGAATCAATGTCTAGAGACTGTCCGCCTGGGTTCTCTTTTACTCGGAGATACAGTATGCGGGAGAGCAGTGGTGGGTTTAAAAGATGGCAATCTGTTAGGCATTTTAGCAATGCCGTTGTGGAGCTTAAAACAGACAACAATACTGTCAGGTTTTCTTTTGGTTGTCCTTCTAGTACTAACGGTTCCCGACTGAAACAAAAGGTGGCAAAAACCAAAATGTCTAAGAAGGCTAAATTGAATGAACTCAGATTCTATCGTCTTAAGGCGAAAAAGAAGAAGACATCTCCCAATCCAGAAGTTAGGATCAGATATTCCCTTGAGAAGGTTCGATACTATCTATAATTTTTAGTTATTCCTTTAGCTTATAATTGAGTGTAGTCTACTCTCCCTTTATAGAAAAAGTGTGTGGCCATTGTCTTGTAAGAGGAGTATTTGATTTCAGTGCCTGCTGAAAAGCTTTTTATCCACATATAATATGTTTGTGTAGCTGATTGAGTTGATTGAATTTTGATTAGCATTTCTTTGAGTAGCCGTGTCTATGTGCATGTGATAAGGTGGCCAGTAACCACTGTTTCTCTGACTTCTGCTTTACACATTTGTAAAACTGTGAAAGTTTATCCTTTGGTTTAGTTCGTGTACTGACTTTGCGTGACTAATGATTTATACATACAAGTGATTGTCATCAAAGTTTAGCTTACAGTTTCATGTAAACCTTTTCTTTTTtATACGAATCATTTGTATGAACATAAAGAAATATTTCATAGAAAATTTTCAAATGAAGAGTCAAGAATAATTTACTTAGTGTTTATACCTTCAACTCAAGGTAAGTGCATACTAATGGTTCAGTTGAATTTTGAATTAATATGTGGACTAATCGAATTGTTCTAATACTTCTTAATGATCATTTGTTCTTATGAACTATGAAGTTATTTGATCTTTGAAGAAATAAGTATTGTATGTAGGCCAAAAGAAAAGAAGCGTGGCTAATTGAGAAGTTGAGGAAATTTGAGATTCCAAAACCTTTTGTAGAAAAGTATGATCCTGAAATTCTTACTGAGGAAGAGAAGCACTACTTGAAGCGTACAGGGGAGAAAAAGAAGAACTTTGTTCTTTTGGGGAGGCGAGGAGTCTTTGGTGGAGTTGTTCTCAATATGCATATGCATTGGAAGAAGCATGAAACTGTTAAAGTTATTTGCAAACCTTGCAAGCCTGGGCAGGTTCATGAATATGCCGAAGAACTTACTCGATTGAGCAAAGGCATTGTGATTGACATAAAACCCAACAACAGCATAATTTTCTATCGGGGAAAGAACTATGTGCAGCCCGAAGTAATGTCACCTCCAAATACGCTATCAAAAGACAAGGTAAGCTGATCTCATTCCTGAAAAGTGAAATGATCAAACAAAATACATTTAATTGATTGATGTGAAAAATTACAAAAGGCAAATTAACCTACCACAGTGGAAGTTTTCAAATTCAGTTAACCACTAATCTGTAGAATTTGTCATTAATAGAATTTGGAAATAAGAAGAGTGGATCAAGAAATGGGGAATTAAATCAAACTCTGTAATTTGATTATAATGTTATGTTTTTTCAATTTGAGAAGCCATCGGAAAATGACACAACAATCAACATAACTTTTCCTATGTAAAATATTGCAGGCTTTGGAAAAATATAAGTATGAACAATCACTTGAACATACAAGCCAGTTCATTGAAAAGTTGGAGAAAGAACTTGAAGATTTTCAGAAGCATCTAGCTCAGTTCAAGAGGAGAAAGGAAGATGCCGCTTTAGAATCCATGGTTAACTCTTGACCGGTAACATTTGTTTTTtACCTGTCATTTCCCACTCACCTATTGTTATAGTTGGCTTTTGTCAAGCATAAATGTTCTTTGAATAAGTTGAGATGTAAAAGTTGAAAGCCATTGTAAGAAGAACAAATACTGATATGGCACGACATGTAGATAGCAACGTCATTTTTTTAAAAATATAGATTGTAGGGCACGATAGCCATGATGATACATTTATTTAAATTCATATTTTTGTTTAATGATATGATTTTAAATTTGATTTTGCCCATTAGCTTAAGTTTTATGGTCAATTGAGATGGTAACAAAGAAAGTGATCCAAGGAGTTCCTTGTTCAAGCCTCAGCATTGTTGATTCCTATCCAATTAATATTTATTTTCATTTGTTGGATTTTTTTCATATTTCAAACTCACAAGTGAGGGAAAGTGTTAGATGGTATATAATTAAATTTACCTCCACCTAACTATCACATATCTTAAACTGTGAGATTGTTGGGAGATGATTTTCTCAAACAAACATTTATGAAGGTTCTGATTTGAATTGCTCCAACTCCTCTTCTATTGAATCATCCACTCCATGAATTTTTTGATACATGTCAGATTAGGATCATGCCACCAATTGCCTTCTGAGATAGTCTATTTTAGAGCTGTAGAGCAACAGTTTTCCTCAATAAATGGTGATGGGCAAGCAGATGATGCACCTGGATCCTTGTACAGAAGTGTGAATGGCGAAGACTTAAAGGTACTTGTCCACCGAGTGTCAAAAGAGGGAAAAGAAAACAAAGAAAAAATTGTACTACCCATGTCTTTTAATCAACAACACTAGTGTCATCTTTATATTAGTTCGGTTACTACTTACTTTACCTTATTTGTTGATTTCACATATCCTACTTGCGTTGGCCTGAACGGAATTAGAATTGAGGATGTAGTGTGTTCGCCTCCGAGAACCATATGTTTTTGTGTAGGGGTCACAACATATCCTCACTATAGTACTAAACATAGTGATTATGAGACCGTTTCATGGGACTTGTCAATTAGGATCTTAGAATTATCCTAACTTGCTTGGAATTTTTATATCATCGATTTAATTGTTTTACTTCTAACACCCATCATCTGTTCTGTTCCATCCATAAGTTAATGTTTATGCTCATTTTCTTTATGATGCAGAATCATAGAAAGGTAGAGACACATATGGGTGAGGTCATCTGCTCAAGACACGGCGAGCCATATCCTAATGGCCGGAGCAGTTACATATATCGGAAACTATTTGGCCAATGGTTGCAAAGAAGCTAGTCTCCTTCAATAGTTTATGGGAGAAAGTGAGCCAATTATACAAAGTCGAATTTGCAGACATAGGGGAACGAACACAACATATCACAATTTATTGTTTTTGTGATGTCTCAATTTTATGAAAATTTCTATGGATAGTATTATAAAACAAAAAATTCAAAACATATTTAGACTA

mRNA sequence

TGTTCTTGATTTCCCTTTCATCTCCCTTAGGGATTATTTAAAAAACGACTCTTTCCTAGGAATTTATTGATTTACTTTACGACCATGCCTCGCTGCCGCGGGTTATCTATCATCGCCTTTTCAAGGGGTTCATTGTTTGGATTCATTCCTCTGATTAGAAATGTATCACCTCTATCTTTATTGAGCATACCCACATCATTTGAGCAGTCCTCACATGGAAGTTGGGAGCATCAAGCAAGTAGTTGTATAGTGAAGTCTCTCAACGAATCAATGTCTAGAGACTGTCCGCCTGGGTTCTCTTTTACTCGGAGATACAGTATGCGGGAGAGCAGTGGTGGGTTTAAAAGATGGCAATCTGTTAGGCATTTTAGCAATGCCGTTGTGGAGCTTAAAACAGACAACAATACTGTCAGGTTTTCTTTTGGTTGTCCTTCTAGTACTAACGGTTCCCGACTGAAACAAAAGGTGGCAAAAACCAAAATGTCTAAGAAGGCTAAATTGAATGAACTCAGATTCTATCGTCTTAAGGCGAAAAAGAAGAAGACATCTCCCAATCCAGAAGTTAGGATCAGATATTCCCTTGAGAAGGCCAAAAGAAAAGAAGCGTGGCTAATTGAGAAGTTGAGGAAATTTGAGATTCCAAAACCTTTTGTAGAAAAGTATGATCCTGAAATTCTTACTGAGGAAGAGAAGCACTACTTGAAGCGTACAGGGGAGAAAAAGAAGAACTTTGTTCTTTTGGGGAGGCGAGGAGTCTTTGGTGGAGTTGTTCTCAATATGCATATGCATTGGAAGAAGCATGAAACTGTTAAAGTTATTTGCAAACCTTGCAAGCCTGGGCAGGTTCATGAATATGCCGAAGAACTTACTCGATTGAGCAAAGGCATTGTGATTGACATAAAACCCAACAACAGCATAATTTTCTATCGGGGAAAGAACTATGTGCAGCCCGAAGTAATGTCACCTCCAAATACGCTATCAAAAGACAAGGCTTTGGAAAAATATAAGTATGAACAATCACTTGAACATACAAGCCAGTTCATTGAAAAGTTGGAGAAAGAACTTGAAGATTTTCAGAAGCATCTAGCTCAGTTCAAGAGGAGAAAGGAAGATGCCGCTTTAGAATCCATGGTTAACTCTTGACCGATTAGGATCATGCCACCAATTGCCTTCTGAGATAGTCTATTTTAGAGCTGTAGAGCAACAGTTTTCCTCAATAAATGGTGATGGGCAAGCAGATGATGCACCTGGATCCTTGTACAGAAGTGTGAATGGCGAAGACTTAAAGAATCATAGAAAGGTAGAGACACATATGGGTGAGGTCATCTGCTCAAGACACGGCGAGCCATATCCTAATGGCCGGAGCAGTTACATATATCGGAAACTATTTGGCCAATGGTTGCAAAGAAGCTAGTCTCCTTCAATAGTTTATGGGAGAAAGTGAGCCAATTATACAAAGTCGAATTTGCAGACATAGGGGAACGAACACAACATATCACAATTTATTGTTTTTGTGATGTCTCAATTTTATGAAAATTTCTATGGATAGTATTATAAAACAAAAAATTCAAAACATATTTAGACTA

Coding sequence (CDS)

ATGCCTCGCTGCCGCGGGTTATCTATCATCGCCTTTTCAAGGGGTTCATTGTTTGGATTCATTCCTCTGATTAGAAATGTATCACCTCTATCTTTATTGAGCATACCCACATCATTTGAGCAGTCCTCACATGGAAGTTGGGAGCATCAAGCAAGTAGTTGTATAGTGAAGTCTCTCAACGAATCAATGTCTAGAGACTGTCCGCCTGGGTTCTCTTTTACTCGGAGATACAGTATGCGGGAGAGCAGTGGTGGGTTTAAAAGATGGCAATCTGTTAGGCATTTTAGCAATGCCGTTGTGGAGCTTAAAACAGACAACAATACTGTCAGGTTTTCTTTTGGTTGTCCTTCTAGTACTAACGGTTCCCGACTGAAACAAAAGGTGGCAAAAACCAAAATGTCTAAGAAGGCTAAATTGAATGAACTCAGATTCTATCGTCTTAAGGCGAAAAAGAAGAAGACATCTCCCAATCCAGAAGTTAGGATCAGATATTCCCTTGAGAAGGCCAAAAGAAAAGAAGCGTGGCTAATTGAGAAGTTGAGGAAATTTGAGATTCCAAAACCTTTTGTAGAAAAGTATGATCCTGAAATTCTTACTGAGGAAGAGAAGCACTACTTGAAGCGTACAGGGGAGAAAAAGAAGAACTTTGTTCTTTTGGGGAGGCGAGGAGTCTTTGGTGGAGTTGTTCTCAATATGCATATGCATTGGAAGAAGCATGAAACTGTTAAAGTTATTTGCAAACCTTGCAAGCCTGGGCAGGTTCATGAATATGCCGAAGAACTTACTCGATTGAGCAAAGGCATTGTGATTGACATAAAACCCAACAACAGCATAATTTTCTATCGGGGAAAGAACTATGTGCAGCCCGAAGTAATGTCACCTCCAAATACGCTATCAAAAGACAAGGCTTTGGAAAAATATAAGTATGAACAATCACTTGAACATACAAGCCAGTTCATTGAAAAGTTGGAGAAAGAACTTGAAGATTTTCAGAAGCATCTAGCTCAGTTCAAGAGGAGAAAGGAAGATGCCGCTTTAGAATCCATGGTTAACTCTTGA

Protein sequence

MPRCRGLSIIAFSRGSLFGFIPLIRNVSPLSLLSIPTSFEQSSHGSWEHQASSCIVKSLNESMSRDCPPGFSFTRRYSMRESSGGFKRWQSVRHFSNAVVELKTDNNTVRFSFGCPSSTNGSRLKQKVAKTKMSKKAKLNELRFYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLIEKLRKFEIPKPFVEKYDPEILTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLNMHMHWKKHETVKVICKPCKPGQVHEYAEELTRLSKGIVIDIKPNNSIIFYRGKNYVQPEVMSPPNTLSKDKALEKYKYEQSLEHTSQFIEKLEKELEDFQKHLAQFKRRKEDAALESMVNS*

Homology

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BLAST of Cucsa.217840 vs. Swiss-Prot
Match: Y3544_ARATH (Uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Arabidopsis thaliana GN=At3g25440 PE=2 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 2.2e-44
Identity = 100/225 (44.44%), Postives = 141/225 (62.67%), Query Frame = 1


Query: 117 SSTNGSRLKQKVAKTKMSKKAKLNELRFYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWL 176
           SS +G    +   K    K+A +  L+F+R K KK+      E +I   L KA++KE  L
Sbjct: 96  SSQDGDSCTKLKRKKLKGKRAVVRWLKFFRWKKKKEFERMTSEEKILNKLRKARKKEERL 155

Query: 177 IEKLRKFEIPKPFVEKYDPEILTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLNMHMHW 236
           +E ++K E  +     +DPEILT EE  Y  + G K KN+V +GRRG++ GV+LNMH+HW
Sbjct: 156 METMKKLEPSESAETTHDPEILTPEEHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLHW 215

Query: 237 KKHETVKVICKPCKPGQVHEYAEELTRLSKGIVIDIKPNNSIIFYRGKNYVQP--EVMSP 296
           KKH+T++V+ K   P +V E A EL RL+ GIV+D+   N+II YRGKNYVQP  E+MSP
Sbjct: 216 KKHQTLQVVIKTFTPDEVKEIAVELARLTGGIVLDVHEGNTIIMYRGKNYVQPPTEIMSP 275

Query: 297 PNTLSKDKALEKYKYEQSLEHTSQFIEKLEKELEDFQKHLAQFKR 340
             TL + KAL+K K   +L    ++I +LE+EL+  Q   A+ KR
Sbjct: 276 RITLPRKKALDKSKCRDALRAVRKYIPRLEQELQLLQAQ-AETKR 319

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BLAST of Cucsa.217840 vs. Swiss-Prot
Match: CFM2_ARATH (CRM-domain containing factor CFM2, chloroplastic OS=Arabidopsis thaliana GN=CFM2 PE=1 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 2.0e-24
Identity = 71/226 (31.42%), Postives = 120/226 (53.10%), Query Frame = 1


Query: 120 NGSRLKQKVAKTKMSKKAK--LNELRFYRLKAKKKKTSP----NPEVRIRYSLEKAKRKE 179
           N   +K +  K  +  +AK   + ++ +++K++++ +         +++  +LEK    E
Sbjct: 498 NEEEIKPRAVKEDIELEAKDQKDHIQTHQMKSRQRNSPEAILEKTSMKLSMALEKKANAE 557

Query: 180 AWLIEKLRKFEIPKPFVEKYDPEILTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLNMH 239
             L + L   E P+  +   D E +T +EK+ L++ G K K F+LLGRRGVF G + NMH
Sbjct: 558 KVLAD-LENRESPQ--LSDIDKEGITNDEKYMLRKIGLKMKPFLLLGRRGVFDGTIENMH 617

Query: 240 MHWKKHETVKVICKPCKPGQVHEYAEELTRLSKGIVIDIK---PNNSIIFYRGKNYVQPE 299
           +HWK  E VK+IC        H+ AE L   S GI++ ++      +II YRGKNY +P+
Sbjct: 618 LHWKYRELVKIICNEYSIEAAHKVAEILEAESGGILVAVEMVSKGYAIIVYRGKNYERPQ 677

Query: 300 VMSPPNTLSKDKALEKYKYEQSLEHTSQFIEKLEKELEDFQKHLAQ 337
            + P   LSK +AL++    Q  +     + KL   +E+  + L +
Sbjct: 678 CLRPQTLLSKREALKRSVEAQRRKSLKLHVLKLSNNIEELNRQLVE 720

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BLAST of Cucsa.217840 vs. Swiss-Prot
Match: CFM3_ORYSJ (CRM-domain containing factor CFM3, chloroplastic/mitochondrial OS=Oryza sativa subsp. japonica GN=CFM3 PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.8e-22
Identity = 66/191 (34.55%), Postives = 101/191 (52.88%), Query Frame = 1


Query: 161 RIRYSLEKAKRKEAWLIEKLRKFEIP-KPFVEKYDPEILTEEEKHYLKRTGEKKKNFVLL 220
           ++ + L+ A++K       L K E   KP      PE +T+EE+   ++ G + K F+LL
Sbjct: 554 KLEWKLQLAQKKIEKAERVLGKVETALKPTEGIQPPETITDEERFMFRKLGLRMKAFLLL 613

Query: 221 GRRGVFGGVVLNMHMHWKKHETVKVICKPCKPGQVHEYAEELTRLSKGIVID---IKPNN 280
           GRRGVF G + NMH+HWK  E VK++ K    G V + A  L   S GI++    +    
Sbjct: 614 GRRGVFDGTIENMHLHWKYRELVKILVKAKSFGDVKKIALSLEAESGGILVSVDKVSKGY 673

Query: 281 SIIFYRGKNYVQPEVMSPPNTLSKDKALEKYKYEQSLEHTSQFIEKLEKELEDFQKHLAQ 340
           +I+ +RGK+Y +P  + P N LSK KAL +    Q  E  S  I  L + ++  +  L Q
Sbjct: 674 AIVVFRGKDYARPSKLRPRNLLSKRKALARSIEIQRREALSHHIATLNRRVKKLKAELLQ 733

Query: 341 FKRRKEDAALE 348
            +  KE+  +E
Sbjct: 734 MEGVKEEGDVE 744

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BLAST of Cucsa.217840 vs. Swiss-Prot
Match: CFM3_MAIZE (CRM-domain containing factor CFM3, chloroplastic/mitochondrial OS=Zea mays GN=CFM3 PE=1 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 7.0e-22
Identity = 65/180 (36.11%), Postives = 96/180 (53.33%), Query Frame = 1


Query: 166 LEKAKRKEAWLIEKLRKFEIPKPFVEKYDPEILTEEEKHYLKRTGEKKKNFVLLGRRGVF 225
           +EKA+R    +   LR  E  +P      PE +T+EE+   ++ G + K F+LLGRRGVF
Sbjct: 558 MEKAERVLGKVETALRPTEDSRP------PETITDEERFMFRKLGLRMKAFLLLGRRGVF 617

Query: 226 GGVVLNMHMHWKKHETVKVICKPCKPGQVHEYAEELTRLSKGIVID---IKPNNSIIFYR 285
            G + NMH+HWK  E VK++ K      V   A  L   S GI++    +    +I+ +R
Sbjct: 618 DGTIENMHLHWKYRELVKILVKAKSFADVKRIALSLEAESGGILVSVDKVSKGYAIVVFR 677

Query: 286 GKNYVQPEVMSPPNTLSKDKALEKYKYEQSLEHTSQFIEKLEKELEDFQKHLAQFKRRKE 343
           GKNY +P  + P N LSK KAL +    Q  +  S+   KL +++E  +  L Q +  KE
Sbjct: 678 GKNYRRPSSLRPRNLLSKRKALARSIELQRHQALSRHFAKLNRKVERLKAELVQMEDVKE 731

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BLAST of Cucsa.217840 vs. Swiss-Prot
Match: CFM3A_ARATH (CRM-domain containing factor CFM3A, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=CFM3A PE=2 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.2e-21
Identity = 71/185 (38.38%), Postives = 100/185 (54.05%), Query Frame = 1


Query: 166 LEKAKRKEAWLIEKLRKFE--------IPKPFVEKYDPEILTEEEKHYLKRTGEKKKNFV 225
           + K +RK A+   KL K E          KP  ++ DPE +T+EE+   ++ G K K F+
Sbjct: 598 VRKLERKLAFAERKLLKAERGLAKVEVCLKPAEQREDPESITDEERFMFRKLGLKMKAFL 657

Query: 226 LLGRRGVFGGVVLNMHMHWKKHETVKVICKPCKPGQVHEYAEELTRLSKGIVIDI---KP 285
           LLGRRGVF G V NMH+HWK  E VK+I K      V + A  L   S GI++ I     
Sbjct: 658 LLGRRGVFDGTVENMHLHWKYRELVKIIVKAKTFDGVKKVALALEAESGGILVSIDKVTK 717

Query: 286 NNSIIFYRGKNYVQPEVMSPPNTLSKDKAL----EKYKYEQSLEHTSQF---IEKLEKEL 333
             +II YRG++Y +P ++ P N L+K KAL    E  + E  L+H S      ++L  E+
Sbjct: 718 GYAIIVYRGQDYKRPTMLRPKNLLTKRKALARSIELQRREGLLKHISTMQAKAKQLRAEI 777

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BLAST of Cucsa.217840 vs. TrEMBL
Match: A0A0A0K5Y2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G062730 PE=4 SV=1)

HSP 1 Score: 712.2 bits (1837), Expect = 3.1e-202
Identity = 352/352 (100.00%), Postives = 352/352 (100.00%), Query Frame = 1


Query: 1   MPRCRGLSIIAFSRGSLFGFIPLIRNVSPLSLLSIPTSFEQSSHGSWEHQASSCIVKSLN 60
           MPRCRGLSIIAFSRGSLFGFIPLIRNVSPLSLLSIPTSFEQSSHGSWEHQASSCIVKSLN
Sbjct: 1   MPRCRGLSIIAFSRGSLFGFIPLIRNVSPLSLLSIPTSFEQSSHGSWEHQASSCIVKSLN 60

Query: 61  ESMSRDCPPGFSFTRRYSMRESSGGFKRWQSVRHFSNAVVELKTDNNTVRFSFGCPSSTN 120
           ESMSRDCPPGFSFTRRYSMRESSGGFKRWQSVRHFSNAVVELKTDNNTVRFSFGCPSSTN
Sbjct: 61  ESMSRDCPPGFSFTRRYSMRESSGGFKRWQSVRHFSNAVVELKTDNNTVRFSFGCPSSTN 120

Query: 121 GSRLKQKVAKTKMSKKAKLNELRFYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLIEKL 180
           GSRLKQKVAKTKMSKKAKLNELRFYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLIEKL
Sbjct: 121 GSRLKQKVAKTKMSKKAKLNELRFYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLIEKL 180

Query: 181 RKFEIPKPFVEKYDPEILTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLNMHMHWKKHE 240
           RKFEIPKPFVEKYDPEILTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLNMHMHWKKHE
Sbjct: 181 RKFEIPKPFVEKYDPEILTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLNMHMHWKKHE 240

Query: 241 TVKVICKPCKPGQVHEYAEELTRLSKGIVIDIKPNNSIIFYRGKNYVQPEVMSPPNTLSK 300
           TVKVICKPCKPGQVHEYAEELTRLSKGIVIDIKPNNSIIFYRGKNYVQPEVMSPPNTLSK
Sbjct: 241 TVKVICKPCKPGQVHEYAEELTRLSKGIVIDIKPNNSIIFYRGKNYVQPEVMSPPNTLSK 300

Query: 301 DKALEKYKYEQSLEHTSQFIEKLEKELEDFQKHLAQFKRRKEDAALESMVNS 353
           DKALEKYKYEQSLEHTSQFIEKLEKELEDFQKHLAQFKRRKEDAALESMVNS
Sbjct: 301 DKALEKYKYEQSLEHTSQFIEKLEKELEDFQKHLAQFKRRKEDAALESMVNS 352

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BLAST of Cucsa.217840 vs. TrEMBL
Match: A0A067LDM8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09572 PE=4 SV=1)

HSP 1 Score: 432.2 bits (1110), Expect = 6.2e-118
Identity = 231/352 (65.62%), Postives = 264/352 (75.00%), Query Frame = 1


Query: 12  FSRGSLFGFIPLIRN--VSPLSLLSIPTSFEQSSHGSWEHQASSCIVKSLNESMS----- 71
           F+ GS+ G   L  N  V   SL+ +   F+Q S+ S  H+A+S +   LN + S     
Sbjct: 3   FAIGSIRGRTNLGHNYIVKRESLVLLSFLFQQGSNLSSLHKATS-VTPLLNWTTSVNLRS 62

Query: 72  -----------RDCPPGFSFTRRYSMRESSGGFKRWQSVRHFSNAVVELKTDNNTVRFSF 131
                      R   P F  T+R ++  S    + W   R  S A  ELKTDN+ VRF+F
Sbjct: 63  YRAVIPFLEAVRVSSPNFLLTQRLNVFASHSVLRSWVYRRWMSRASFELKTDNDVVRFAF 122

Query: 132 GCPSSTNGSRLKQK--VAKTKMSKKAKLNELRFYRLKAKKKKTSPNPEVRIRYSLEKAKR 191
           G     NGS  K+K    + KMS+KAKLNELRFYRLKAKKKK SPNPEVRIRY LEKAKR
Sbjct: 123 GKQPGKNGSSEKRKKTTKRVKMSRKAKLNELRFYRLKAKKKKNSPNPEVRIRYKLEKAKR 182

Query: 192 KEAWLIEKLRKFEIPKPFVEKYDPEILTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLN 251
           KE WLIEKLRKFE+PK   E YDPEILTEEEKHYLKRTGEKKKNFVL+GRRGVFGGVVLN
Sbjct: 183 KEVWLIEKLRKFEVPKIPAEVYDPEILTEEEKHYLKRTGEKKKNFVLVGRRGVFGGVVLN 242

Query: 252 MHMHWKKHETVKVICKPCKPGQVHEYAEELTRLSKGIVIDIKPNNSIIFYRGKNYVQPEV 311
           MH+HWKKHETVKVIC+PCKPGQ+HEYAEEL RLSKGIVIDIKPNNSI+FYRGKNYVQPEV
Sbjct: 243 MHLHWKKHETVKVICRPCKPGQIHEYAEELARLSKGIVIDIKPNNSIVFYRGKNYVQPEV 302

Query: 312 MSPPNTLSKDKALEKYKYEQSLEHTSQFIEKLEKELEDFQKHLAQFKRRKED 344
           MSPPNTLSK KALEKYKYEQSLEHTSQFIEKLEKELE++ +H+A++++ KED
Sbjct: 303 MSPPNTLSKQKALEKYKYEQSLEHTSQFIEKLEKELEEYLEHVARYRKLKED 353

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BLAST of Cucsa.217840 vs. TrEMBL
Match: K7KRJ8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_05G236500 PE=4 SV=1)

HSP 1 Score: 424.1 bits (1089), Expect = 1.7e-115
Identity = 221/352 (62.78%), Postives = 256/352 (72.73%), Query Frame = 1


Query: 5   RGLSIIAFSRGSLFGFIPLIRNVSPLSLLSIPTSFEQSSHGSWEHQASSCIVKS------ 64
           RG S   F+R SLF    L+ +V  ++     TS+       W      CI +       
Sbjct: 12  RGFSC-TFNRDSLFWLCCLVEHVPTIASCPTTTSY------FWSFTPDKCIYQRTYRTPS 71

Query: 65  -LNESMSRDCPPGFSFTRRYSMRESSGGFKRWQSVRHFSNAVVELKTDNNTVRFSFGCPS 124
            L+   S     GF   +R ++  S      W   R+ SN  VELKT N+ +RFS G   
Sbjct: 72  HLSGVSSLASRSGFLLMQRSNIFGSHDILGSWLPARYISNESVELKTHNDVIRFSLGKSD 131

Query: 125 STNGSRLKQKVAKTKMSKKAKLNELRFYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLI 184
             N ++  Q   K KMS+KAKLNELRFYRLKAKKK  SPNPEVRIRY LEKAKRKE WLI
Sbjct: 132 DINNAKKSQLNKKFKMSRKAKLNELRFYRLKAKKKMNSPNPEVRIRYKLEKAKRKETWLI 191

Query: 185 EKLRKFEIPKPFVEKYDPEILTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLNMHMHWK 244
           EKLRKF++PKP  E YDPEILTEEE+HYLKRTGE+KK++V +GRRGVFGGVVLNMH+HWK
Sbjct: 192 EKLRKFDVPKPPPETYDPEILTEEERHYLKRTGERKKHYVPVGRRGVFGGVVLNMHLHWK 251

Query: 245 KHETVKVICKPCKPGQVHEYAEELTRLSKGIVIDIKPNNSIIFYRGKNYVQPEVMSPPNT 304
            HETVKVICKPCKPGQVHEYAEEL RLSKGIVIDIKPNN+IIFYRGKNYV+PEVMSPPNT
Sbjct: 252 NHETVKVICKPCKPGQVHEYAEELARLSKGIVIDIKPNNTIIFYRGKNYVKPEVMSPPNT 311

Query: 305 LSKDKALEKYKYEQSLEHTSQFIEKLEKELEDFQKHLAQFKRRKEDAALESM 350
           LSK KALEKY+YEQSLEHTSQFIEKLEKELE++ +HLA+FK+ KED A + +
Sbjct: 312 LSKAKALEKYRYEQSLEHTSQFIEKLEKELEEYHQHLAKFKKGKEDTAKDGL 356

[Close]

BLAST of Cucsa.217840 vs. TrEMBL
Match: K7L4Y2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_08G043700 PE=4 SV=1)

HSP 1 Score: 420.2 bits (1079), Expect = 2.4e-114
Identity = 219/346 (63.29%), Postives = 255/346 (73.70%), Query Frame = 1


Query: 5   RGLSIIAFSRGSLFGFIPLIRNVSPLSLLSIPTSFEQS-SHGSWEHQASSCIVKSLNESM 64
           RG S   F+R SLF    L+ +V  ++     TS+  S +     HQ +    + L+   
Sbjct: 12  RGFSC-TFNRDSLFWLCCLVEHVPTIASSPTTTSYFWSFTPDKCIHQRTYRTPRHLSRVP 71

Query: 65  SRDCPPGFSFTRRYSMRESSGGFKRWQSVRHFSNAVVELKTDNNTVRFSFGCPSSTNGSR 124
           S    PGF   +R ++         W   R+ SN  VELKTDNN VRFS       N  +
Sbjct: 72  SLSSRPGFLLMQRSNIFGIHDILGNWLPARYISNESVELKTDNNVVRFSLDKSDDINYGK 131

Query: 125 LKQKVAKTKMSKKAKLNELRFYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLIEKLRKF 184
             Q   + KMS+KAKLNELRFYRLKAKKK  SPNPEVRI Y LEKAKRKE WL+EKLRKF
Sbjct: 132 KSQLNKRVKMSRKAKLNELRFYRLKAKKKMISPNPEVRITYKLEKAKRKETWLVEKLRKF 191

Query: 185 EIPKPFVEKYDPEILTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLNMHMHWKKHETVK 244
           ++PK   E +DPEILTEEE+HYLKRTGEKKK++V +GRRGVFGGVVLNMH+HWK HETVK
Sbjct: 192 DVPKSPPETFDPEILTEEERHYLKRTGEKKKHYVPVGRRGVFGGVVLNMHLHWKNHETVK 251

Query: 245 VICKPCKPGQVHEYAEELTRLSKGIVIDIKPNNSIIFYRGKNYVQPEVMSPPNTLSKDKA 304
           VICKPCKPGQVHEYAEEL RLSKGIVIDIKPNN+IIFYRGKNYVQPEVMSPPNTLSK KA
Sbjct: 252 VICKPCKPGQVHEYAEELARLSKGIVIDIKPNNTIIFYRGKNYVQPEVMSPPNTLSKVKA 311

Query: 305 LEKYKYEQSLEHTSQFIEKLEKELEDFQKHLAQFKRRKEDAALESM 350
           LEKY+YEQSLEHTSQFIE+LEKELE++ +HLA+FK+ KED A + +
Sbjct: 312 LEKYRYEQSLEHTSQFIERLEKELEEYHQHLAKFKKGKEDNAKDGL 356

[Close]

BLAST of Cucsa.217840 vs. TrEMBL
Match: A0A0B2Q5J0_GLYSO (Putative CRM domain-containing protein, chloroplastic OS=Glycine soja GN=glysoja_002652 PE=4 SV=1)

HSP 1 Score: 419.5 bits (1077), Expect = 4.1e-114
Identity = 219/342 (64.04%), Postives = 253/342 (73.98%), Query Frame = 1


Query: 5   RGLSIIAFSRGSLFGFIPLIRNVSPLSLLSIPTSFEQS-SHGSWEHQASSCIVKSLNESM 64
           RG S   F+R SLF    L+ +V  ++     TS+  S +     HQ +    + L+   
Sbjct: 12  RGFSC-TFNRDSLFWLCCLVEHVPTIASSPTTTSYFWSFTPDKCIHQRTYRTPRHLSRVP 71

Query: 65  SRDCPPGFSFTRRYSMRESSGGFKRWQSVRHFSNAVVELKTDNNTVRFSFGCPSSTNGSR 124
           S    PGF   +R ++         W   R+ SN  VELKTDNN VRFS       N  +
Sbjct: 72  SLSSRPGFLLMQRSNIFGIHDILGNWLPARYISNESVELKTDNNVVRFSLDKSDDINYGK 131

Query: 125 LKQKVAKTKMSKKAKLNELRFYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLIEKLRKF 184
             Q   + KMS+KAKLNELRFYRLKAKKK  SPNPEVRI Y LEKAKRKE WL+EKLRKF
Sbjct: 132 KSQLNKRVKMSRKAKLNELRFYRLKAKKKMISPNPEVRITYKLEKAKRKETWLVEKLRKF 191

Query: 185 EIPKPFVEKYDPEILTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLNMHMHWKKHETVK 244
           ++PK   E +DPEILTEEE+HYLKRTGEKKK++V +GRRGVFGGVVLNMH+HWK HETVK
Sbjct: 192 DVPKSPPETFDPEILTEEERHYLKRTGEKKKHYVPVGRRGVFGGVVLNMHLHWKNHETVK 251

Query: 245 VICKPCKPGQVHEYAEELTRLSKGIVIDIKPNNSIIFYRGKNYVQPEVMSPPNTLSKDKA 304
           VICKPCKPGQVHEYAEEL RLSKGIVIDIKPNN+IIFYRGKNYVQPEVMSPPNTLSK KA
Sbjct: 252 VICKPCKPGQVHEYAEELARLSKGIVIDIKPNNTIIFYRGKNYVQPEVMSPPNTLSKVKA 311

Query: 305 LEKYKYEQSLEHTSQFIEKLEKELEDFQKHLAQFKRRKEDAA 346
           LEKY+YEQSLEHTSQFIE+LEKELE++ +HLA+FK+ KED A
Sbjct: 312 LEKYRYEQSLEHTSQFIERLEKELEEYHQHLAKFKKGKEDNA 352

[Close]

BLAST of Cucsa.217840 vs. TAIR10
Match: AT4G13070.1 (AT4G13070.1 RNA-binding CRS1 / YhbY (CRM) domain protein)

HSP 1 Score: 392.5 bits (1007), Expect = 2.7e-109
Identity = 193/279 (69.18%), Postives = 235/279 (84.23%), Query Frame = 1


Query: 72  SFTRRYSMRESSGGFKRWQSVRHFSNAVVELKTDNNTVRFSFGCPSSTNGS----RLKQK 131
           S  +R+++    G F R    R+ SN+ +EL+TD+N VRF+F   SS+  +    R ++K
Sbjct: 56  SQAQRWNLFAYDGLFSR----RYLSNSTIELRTDDNVVRFAFNNVSSSGNNVVPTRKEKK 115

Query: 132 VAKTKMSKKAKLNELRFYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLIEKLRKFEIPK 191
             + K+S+KAK+NELRFYRLKAKKK  SPNPEVRIRY LEKAKRKE WLIEKLRK+++PK
Sbjct: 116 WKRAKLSRKAKVNELRFYRLKAKKKMNSPNPEVRIRYKLEKAKRKEEWLIEKLRKYDVPK 175

Query: 192 PFVEKYDPEILTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLNMHMHWKKHETVKVICK 251
              E YDPE LTEEE+HYLKRTGEK+KNFVL+GRRGVFGGVVLN+H+HWKKHETVKVICK
Sbjct: 176 SPAEPYDPESLTEEEQHYLKRTGEKRKNFVLVGRRGVFGGVVLNLHLHWKKHETVKVICK 235

Query: 252 PC-KPGQVHEYAEELTRLSKGIVIDIKPNNSIIFYRGKNYVQPEVMSPPNTLSKDKALEK 311
           PC KPGQVHEYAEEL RLSKGIVID+KPNN+I+ YRGKNYV+PEVMSP +TLSKDKALEK
Sbjct: 236 PCNKPGQVHEYAEELARLSKGIVIDVKPNNTIVLYRGKNYVRPEVMSPVDTLSKDKALEK 295

Query: 312 YKYEQSLEHTSQFIEKLEKELEDFQKHLAQFKRRKEDAA 346
           Y+YEQSLEHTS+FIEKLEKELE++ K++A+ K++K++ A
Sbjct: 296 YRYEQSLEHTSEFIEKLEKELEEYHKYVARHKKKKDEEA 330

[Close]

BLAST of Cucsa.217840 vs. TAIR10
Match: AT2G28480.1 (AT2G28480.1 RNA-binding CRS1 / YhbY (CRM) domain protein)

HSP 1 Score: 225.7 bits (574), Expect = 4.4e-59
Identity = 119/216 (55.09%), Postives = 154/216 (71.30%), Query Frame = 1


Query: 123 RLKQKVAKTKMSKKA-KLNELRFYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLIEKLR 182
           RLK K  K +  + A    + R   +K KKKK   N E RI+Y LEKAK KEA LIE+L+
Sbjct: 89  RLKLKRKKEREERNAANRKDPRRLTVKGKKKKFV-NAEERIKYKLEKAKIKEALLIERLK 148

Query: 183 KFEIPKPFVEKYDPEILTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLNMHMHWKKHET 242
           ++E+ K    +  P  +T EE+ YLK+ G+K+ N+V +GRRGVFGGV+LNMH+HWKKHET
Sbjct: 149 RYEVAKVQGPEVRPHEITGEERFYLKKMGQKRSNYVPIGRRGVFGGVILNMHLHWKKHET 208

Query: 243 VKVICKPCKPGQVHEYAEELTRLSKGIVIDIKPNNSIIFYRGKNYVQPEVMSPPNTLSKD 302
           VKVIC   KPGQV +YAEEL +LS G+ ++I  +++IIFYRGK YVQP+VMSP +TLSK 
Sbjct: 209 VKVICNNSKPGQVQQYAEELAKLSGGVPVNIIGDDTIIFYRGKGYVQPQVMSPIDTLSKK 268

Query: 303 KALEKYKYEQSLEHTSQFIEKLEKELEDFQKHLAQF 338
           +A EK KYEQSLE    FI   EKELE + +H+A +
Sbjct: 269 RAYEKSKYEQSLESVRHFIAIAEKELELYYRHVALY 303

[Close]

BLAST of Cucsa.217840 vs. TAIR10
Match: AT3G25440.1 (AT3G25440.1 RNA-binding CRS1 / YhbY (CRM) domain protein)

HSP 1 Score: 181.0 bits (458), Expect = 1.3e-45
Identity = 100/225 (44.44%), Postives = 141/225 (62.67%), Query Frame = 1


Query: 117 SSTNGSRLKQKVAKTKMSKKAKLNELRFYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWL 176
           SS +G    +   K    K+A +  L+F+R K KK+      E +I   L KA++KE  L
Sbjct: 96  SSQDGDSCTKLKRKKLKGKRAVVRWLKFFRWKKKKEFERMTSEEKILNKLRKARKKEERL 155

Query: 177 IEKLRKFEIPKPFVEKYDPEILTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLNMHMHW 236
           +E ++K E  +     +DPEILT EE  Y  + G K KN+V +GRRG++ GV+LNMH+HW
Sbjct: 156 METMKKLEPSESAETTHDPEILTPEEHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLHW 215

Query: 237 KKHETVKVICKPCKPGQVHEYAEELTRLSKGIVIDIKPNNSIIFYRGKNYVQP--EVMSP 296
           KKH+T++V+ K   P +V E A EL RL+ GIV+D+   N+II YRGKNYVQP  E+MSP
Sbjct: 216 KKHQTLQVVIKTFTPDEVKEIAVELARLTGGIVLDVHEGNTIIMYRGKNYVQPPTEIMSP 275

Query: 297 PNTLSKDKALEKYKYEQSLEHTSQFIEKLEKELEDFQKHLAQFKR 340
             TL + KAL+K K   +L    ++I +LE+EL+  Q   A+ KR
Sbjct: 276 RITLPRKKALDKSKCRDALRAVRKYIPRLEQELQLLQAQ-AETKR 319

[Close]

BLAST of Cucsa.217840 vs. TAIR10
Match: AT3G27550.1 (AT3G27550.1 RNA-binding CRS1 / YhbY (CRM) domain protein)

HSP 1 Score: 166.8 bits (421), Expect = 2.4e-41
Identity = 91/211 (43.13%), Postives = 132/211 (62.56%), Query Frame = 1


Query: 117 SSTNGSRLKQKVAKTKMSKKAKLNELRFYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWL 176
           S++ G  ++ KV      +  K   LR  R   K KK     E R+ Y+L++AK+K A L
Sbjct: 13  STSRGRSMRSKVESRMRKESGKT--LREIRRAKKLKKKLMTDEERLIYNLKRAKKKVALL 72

Query: 177 IEKLRKFEIPKPFVEKYDPEILTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLNMHMHW 236
           ++KL+K+++P+     +DPE+ T E+    K+ G K KN+V +G RGVFGGVV NMHMHW
Sbjct: 73  LQKLKKYDLPELPSPVHDPELFTSEQVQAFKKIGFKNKNYVPVGVRGVFGGVVQNMHMHW 132

Query: 237 KKHETVKVICKPCKPGQVHEYAEELTRLSKGIVIDIKPNNSIIFYRGKNYVQPEVMSPPN 296
           K HETV+V C      ++ E A  + RLS G+VI+I    +II +RG+NY QP+ + P N
Sbjct: 133 KFHETVQVCCDNFPKEKIKEMASMIARLSGGVVINIHNVKTIIMFRGRNYRQPKNLIPVN 192

Query: 297 TLSKDKALEKYKYEQSLEHTSQFIEKLEKEL 328
           TL+K KAL K ++EQ+LE     I+K E++L
Sbjct: 193 TLTKRKALFKARFEQALESQKLNIKKTEQQL 221

[Close]

BLAST of Cucsa.217840 vs. TAIR10
Match: AT3G01370.1 (AT3G01370.1 CRM family member 2)

HSP 1 Score: 114.8 bits (286), Expect = 1.1e-25
Identity = 71/226 (31.42%), Postives = 120/226 (53.10%), Query Frame = 1


Query: 120 NGSRLKQKVAKTKMSKKAK--LNELRFYRLKAKKKKTSP----NPEVRIRYSLEKAKRKE 179
           N   +K +  K  +  +AK   + ++ +++K++++ +         +++  +LEK    E
Sbjct: 498 NEEEIKPRAVKEDIELEAKDQKDHIQTHQMKSRQRNSPEAILEKTSMKLSMALEKKANAE 557

Query: 180 AWLIEKLRKFEIPKPFVEKYDPEILTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLNMH 239
             L + L   E P+  +   D E +T +EK+ L++ G K K F+LLGRRGVF G + NMH
Sbjct: 558 KVLAD-LENRESPQ--LSDIDKEGITNDEKYMLRKIGLKMKPFLLLGRRGVFDGTIENMH 617

Query: 240 MHWKKHETVKVICKPCKPGQVHEYAEELTRLSKGIVIDIK---PNNSIIFYRGKNYVQPE 299
           +HWK  E VK+IC        H+ AE L   S GI++ ++      +II YRGKNY +P+
Sbjct: 618 LHWKYRELVKIICNEYSIEAAHKVAEILEAESGGILVAVEMVSKGYAIIVYRGKNYERPQ 677

Query: 300 VMSPPNTLSKDKALEKYKYEQSLEHTSQFIEKLEKELEDFQKHLAQ 337
            + P   LSK +AL++    Q  +     + KL   +E+  + L +
Sbjct: 678 CLRPQTLLSKREALKRSVEAQRRKSLKLHVLKLSNNIEELNRQLVE 720

[Close]

BLAST of Cucsa.217840 vs. NCBI nr
Match: gi|778724321|ref|XP_011658783.1| (PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Cucumis sativus])

HSP 1 Score: 712.2 bits (1837), Expect = 4.4e-202
Identity = 352/352 (100.00%), Postives = 352/352 (100.00%), Query Frame = 1


Query: 1   MPRCRGLSIIAFSRGSLFGFIPLIRNVSPLSLLSIPTSFEQSSHGSWEHQASSCIVKSLN 60
           MPRCRGLSIIAFSRGSLFGFIPLIRNVSPLSLLSIPTSFEQSSHGSWEHQASSCIVKSLN
Sbjct: 1   MPRCRGLSIIAFSRGSLFGFIPLIRNVSPLSLLSIPTSFEQSSHGSWEHQASSCIVKSLN 60

Query: 61  ESMSRDCPPGFSFTRRYSMRESSGGFKRWQSVRHFSNAVVELKTDNNTVRFSFGCPSSTN 120
           ESMSRDCPPGFSFTRRYSMRESSGGFKRWQSVRHFSNAVVELKTDNNTVRFSFGCPSSTN
Sbjct: 61  ESMSRDCPPGFSFTRRYSMRESSGGFKRWQSVRHFSNAVVELKTDNNTVRFSFGCPSSTN 120

Query: 121 GSRLKQKVAKTKMSKKAKLNELRFYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLIEKL 180
           GSRLKQKVAKTKMSKKAKLNELRFYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLIEKL
Sbjct: 121 GSRLKQKVAKTKMSKKAKLNELRFYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLIEKL 180

Query: 181 RKFEIPKPFVEKYDPEILTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLNMHMHWKKHE 240
           RKFEIPKPFVEKYDPEILTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLNMHMHWKKHE
Sbjct: 181 RKFEIPKPFVEKYDPEILTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLNMHMHWKKHE 240

Query: 241 TVKVICKPCKPGQVHEYAEELTRLSKGIVIDIKPNNSIIFYRGKNYVQPEVMSPPNTLSK 300
           TVKVICKPCKPGQVHEYAEELTRLSKGIVIDIKPNNSIIFYRGKNYVQPEVMSPPNTLSK
Sbjct: 241 TVKVICKPCKPGQVHEYAEELTRLSKGIVIDIKPNNSIIFYRGKNYVQPEVMSPPNTLSK 300

Query: 301 DKALEKYKYEQSLEHTSQFIEKLEKELEDFQKHLAQFKRRKEDAALESMVNS 353
           DKALEKYKYEQSLEHTSQFIEKLEKELEDFQKHLAQFKRRKEDAALESMVNS
Sbjct: 301 DKALEKYKYEQSLEHTSQFIEKLEKELEDFQKHLAQFKRRKEDAALESMVNS 352

[Close]

BLAST of Cucsa.217840 vs. NCBI nr
Match: gi|659110425|ref|XP_008455218.1| (PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Cucumis melo])

HSP 1 Score: 624.4 bits (1609), Expect = 1.2e-175
Identity = 317/345 (91.88%), Postives = 324/345 (93.91%), Query Frame = 1


Query: 1   MPRCRGLSIIAFSRGSLFGFIPLIRNVSPLSLLSIPTSFEQSSHGSWEHQASSCIVKSLN 60
           MPRCRG SII  SRGSLFGF  LIRN SPLSLLS+PTSF QSSHGS EHQASS IVKSLN
Sbjct: 1   MPRCRGQSIITISRGSLFGFTSLIRNASPLSLLSVPTSFGQSSHGSCEHQASSRIVKSLN 60

Query: 61  ESMSRDCPPGFSFTRRYSMRESSGGFKRWQSVRHFSNAVVELKTDNNTVRFSFGCPSSTN 120
           ES SRDCPPG S T RYSM ES GGFKRWQSVRHFSNAVVELKTD+NTVRFSFG PSSTN
Sbjct: 61  ESTSRDCPPGSSLTWRYSMWESYGGFKRWQSVRHFSNAVVELKTDSNTVRFSFG-PSSTN 120

Query: 121 GSRLKQ-KVAKTKMSKKAKLNELRFYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLIEK 180
           GS+LKQ KVAKTK+SKK KLNELR YRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLIEK
Sbjct: 121 GSQLKQKKVAKTKLSKKDKLNELRLYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLIEK 180

Query: 181 LRKFEIPKPFVEKYDPEILTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLNMHMHWKKH 240
           LRKFEIPK  VEKYDPEILTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLNMHMHWKKH
Sbjct: 181 LRKFEIPKSVVEKYDPEILTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLNMHMHWKKH 240

Query: 241 ETVKVICKPCKPGQVHEYAEELTRLSKGIVIDIKPNNSIIFYRGKNYVQPEVMSPPNTLS 300
           ETVKVICKPCKPGQVHEYAEEL+RLSKGIVIDIKPNNSIIFYRGKNYVQPEVMSPP+TLS
Sbjct: 241 ETVKVICKPCKPGQVHEYAEELSRLSKGIVIDIKPNNSIIFYRGKNYVQPEVMSPPDTLS 300

Query: 301 KDKALEKYKYEQSLEHTSQFIEKLEKELEDFQKHLAQFKRRKEDA 345
           KDKALEKY+YEQSLEHTSQFIEKLEKELEDFQKHLAQFKRRKEDA
Sbjct: 301 KDKALEKYRYEQSLEHTSQFIEKLEKELEDFQKHLAQFKRRKEDA 344

[Close]

BLAST of Cucsa.217840 vs. NCBI nr
Match: gi|802542415|ref|XP_012081307.1| (PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Jatropha curcas])

HSP 1 Score: 432.2 bits (1110), Expect = 8.8e-118
Identity = 231/352 (65.62%), Postives = 264/352 (75.00%), Query Frame = 1


Query: 12  FSRGSLFGFIPLIRN--VSPLSLLSIPTSFEQSSHGSWEHQASSCIVKSLNESMS----- 71
           F+ GS+ G   L  N  V   SL+ +   F+Q S+ S  H+A+S +   LN + S     
Sbjct: 3   FAIGSIRGRTNLGHNYIVKRESLVLLSFLFQQGSNLSSLHKATS-VTPLLNWTTSVNLRS 62

Query: 72  -----------RDCPPGFSFTRRYSMRESSGGFKRWQSVRHFSNAVVELKTDNNTVRFSF 131
                      R   P F  T+R ++  S    + W   R  S A  ELKTDN+ VRF+F
Sbjct: 63  YRAVIPFLEAVRVSSPNFLLTQRLNVFASHSVLRSWVYRRWMSRASFELKTDNDVVRFAF 122

Query: 132 GCPSSTNGSRLKQK--VAKTKMSKKAKLNELRFYRLKAKKKKTSPNPEVRIRYSLEKAKR 191
           G     NGS  K+K    + KMS+KAKLNELRFYRLKAKKKK SPNPEVRIRY LEKAKR
Sbjct: 123 GKQPGKNGSSEKRKKTTKRVKMSRKAKLNELRFYRLKAKKKKNSPNPEVRIRYKLEKAKR 182

Query: 192 KEAWLIEKLRKFEIPKPFVEKYDPEILTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLN 251
           KE WLIEKLRKFE+PK   E YDPEILTEEEKHYLKRTGEKKKNFVL+GRRGVFGGVVLN
Sbjct: 183 KEVWLIEKLRKFEVPKIPAEVYDPEILTEEEKHYLKRTGEKKKNFVLVGRRGVFGGVVLN 242

Query: 252 MHMHWKKHETVKVICKPCKPGQVHEYAEELTRLSKGIVIDIKPNNSIIFYRGKNYVQPEV 311
           MH+HWKKHETVKVIC+PCKPGQ+HEYAEEL RLSKGIVIDIKPNNSI+FYRGKNYVQPEV
Sbjct: 243 MHLHWKKHETVKVICRPCKPGQIHEYAEELARLSKGIVIDIKPNNSIVFYRGKNYVQPEV 302

Query: 312 MSPPNTLSKDKALEKYKYEQSLEHTSQFIEKLEKELEDFQKHLAQFKRRKED 344
           MSPPNTLSK KALEKYKYEQSLEHTSQFIEKLEKELE++ +H+A++++ KED
Sbjct: 303 MSPPNTLSKQKALEKYKYEQSLEHTSQFIEKLEKELEEYLEHVARYRKLKED 353

[Close]

BLAST of Cucsa.217840 vs. NCBI nr
Match: gi|955322124|ref|XP_014631386.1| (PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic-like [Glycine max])

HSP 1 Score: 424.1 bits (1089), Expect = 2.4e-115
Identity = 221/352 (62.78%), Postives = 256/352 (72.73%), Query Frame = 1


Query: 5   RGLSIIAFSRGSLFGFIPLIRNVSPLSLLSIPTSFEQSSHGSWEHQASSCIVKS------ 64
           RG S   F+R SLF    L+ +V  ++     TS+       W      CI +       
Sbjct: 12  RGFSC-TFNRDSLFWLCCLVEHVPTIASCPTTTSY------FWSFTPDKCIYQRTYRTPS 71

Query: 65  -LNESMSRDCPPGFSFTRRYSMRESSGGFKRWQSVRHFSNAVVELKTDNNTVRFSFGCPS 124
            L+   S     GF   +R ++  S      W   R+ SN  VELKT N+ +RFS G   
Sbjct: 72  HLSGVSSLASRSGFLLMQRSNIFGSHDILGSWLPARYISNESVELKTHNDVIRFSLGKSD 131

Query: 125 STNGSRLKQKVAKTKMSKKAKLNELRFYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLI 184
             N ++  Q   K KMS+KAKLNELRFYRLKAKKK  SPNPEVRIRY LEKAKRKE WLI
Sbjct: 132 DINNAKKSQLNKKFKMSRKAKLNELRFYRLKAKKKMNSPNPEVRIRYKLEKAKRKETWLI 191

Query: 185 EKLRKFEIPKPFVEKYDPEILTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLNMHMHWK 244
           EKLRKF++PKP  E YDPEILTEEE+HYLKRTGE+KK++V +GRRGVFGGVVLNMH+HWK
Sbjct: 192 EKLRKFDVPKPPPETYDPEILTEEERHYLKRTGERKKHYVPVGRRGVFGGVVLNMHLHWK 251

Query: 245 KHETVKVICKPCKPGQVHEYAEELTRLSKGIVIDIKPNNSIIFYRGKNYVQPEVMSPPNT 304
            HETVKVICKPCKPGQVHEYAEEL RLSKGIVIDIKPNN+IIFYRGKNYV+PEVMSPPNT
Sbjct: 252 NHETVKVICKPCKPGQVHEYAEELARLSKGIVIDIKPNNTIIFYRGKNYVKPEVMSPPNT 311

Query: 305 LSKDKALEKYKYEQSLEHTSQFIEKLEKELEDFQKHLAQFKRRKEDAALESM 350
           LSK KALEKY+YEQSLEHTSQFIEKLEKELE++ +HLA+FK+ KED A + +
Sbjct: 312 LSKAKALEKYRYEQSLEHTSQFIEKLEKELEEYHQHLAKFKKGKEDTAKDGL 356

[Close]

BLAST of Cucsa.217840 vs. NCBI nr
Match: gi|955333068|ref|XP_014633880.1| (PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic-like [Glycine max])

HSP 1 Score: 420.2 bits (1079), Expect = 3.5e-114
Identity = 219/346 (63.29%), Postives = 255/346 (73.70%), Query Frame = 1


Query: 5   RGLSIIAFSRGSLFGFIPLIRNVSPLSLLSIPTSFEQS-SHGSWEHQASSCIVKSLNESM 64
           RG S   F+R SLF    L+ +V  ++     TS+  S +     HQ +    + L+   
Sbjct: 22  RGFSC-TFNRDSLFWLCCLVEHVPTIASSPTTTSYFWSFTPDKCIHQRTYRTPRHLSRVP 81

Query: 65  SRDCPPGFSFTRRYSMRESSGGFKRWQSVRHFSNAVVELKTDNNTVRFSFGCPSSTNGSR 124
           S    PGF   +R ++         W   R+ SN  VELKTDNN VRFS       N  +
Sbjct: 82  SLSSRPGFLLMQRSNIFGIHDILGNWLPARYISNESVELKTDNNVVRFSLDKSDDINYGK 141

Query: 125 LKQKVAKTKMSKKAKLNELRFYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLIEKLRKF 184
             Q   + KMS+KAKLNELRFYRLKAKKK  SPNPEVRI Y LEKAKRKE WL+EKLRKF
Sbjct: 142 KSQLNKRVKMSRKAKLNELRFYRLKAKKKMISPNPEVRITYKLEKAKRKETWLVEKLRKF 201

Query: 185 EIPKPFVEKYDPEILTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLNMHMHWKKHETVK 244
           ++PK   E +DPEILTEEE+HYLKRTGEKKK++V +GRRGVFGGVVLNMH+HWK HETVK
Sbjct: 202 DVPKSPPETFDPEILTEEERHYLKRTGEKKKHYVPVGRRGVFGGVVLNMHLHWKNHETVK 261

Query: 245 VICKPCKPGQVHEYAEELTRLSKGIVIDIKPNNSIIFYRGKNYVQPEVMSPPNTLSKDKA 304
           VICKPCKPGQVHEYAEEL RLSKGIVIDIKPNN+IIFYRGKNYVQPEVMSPPNTLSK KA
Sbjct: 262 VICKPCKPGQVHEYAEELARLSKGIVIDIKPNNTIIFYRGKNYVQPEVMSPPNTLSKVKA 321

Query: 305 LEKYKYEQSLEHTSQFIEKLEKELEDFQKHLAQFKRRKEDAALESM 350
           LEKY+YEQSLEHTSQFIE+LEKELE++ +HLA+FK+ KED A + +
Sbjct: 322 LEKYRYEQSLEHTSQFIERLEKELEEYHQHLAKFKKGKEDNAKDGL 366

The following BLAST results are available for this feature:

BLAST of Cucsa.217840 vs. Swiss-Prot


Match Name	E-value	Identity	Description
Y3544_ARATH	2.2e-44	44.44	Uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Arabid...	[more]
CFM2_ARATH	2.0e-24	31.42	CRM-domain containing factor CFM2, chloroplastic OS=Arabidopsis thaliana GN=CFM2...	[more]
CFM3_ORYSJ	1.8e-22	34.55	CRM-domain containing factor CFM3, chloroplastic/mitochondrial OS=Oryza sativa s...	[more]
CFM3_MAIZE	7.0e-22	36.11	CRM-domain containing factor CFM3, chloroplastic/mitochondrial OS=Zea mays GN=CF...	[more]
CFM3A_ARATH	1.2e-21	38.38	CRM-domain containing factor CFM3A, chloroplastic/mitochondrial OS=Arabidopsis t...	[more]

BLAST of Cucsa.217840 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K5Y2_CUCSA	3.1e-202	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G062730 PE=4 SV=1	[more]
A0A067LDM8_JATCU	6.2e-118	65.63	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09572 PE=4 SV=1	[more]
K7KRJ8_SOYBN	1.7e-115	62.78	Uncharacterized protein OS=Glycine max GN=GLYMA_05G236500 PE=4 SV=1	[more]
K7L4Y2_SOYBN	2.4e-114	63.29	Uncharacterized protein OS=Glycine max GN=GLYMA_08G043700 PE=4 SV=1	[more]
A0A0B2Q5J0_GLYSO	4.1e-114	64.04	Putative CRM domain-containing protein, chloroplastic OS=Glycine soja GN=glysoja...	[more]

BLAST of Cucsa.217840 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G13070.1	2.7e-109	69.18	RNA-binding CRS1 / YhbY (CRM) domain protein	[more]
AT2G28480.1	4.4e-59	55.09	RNA-binding CRS1 / YhbY (CRM) domain protein	[more]
AT3G25440.1	1.3e-45	44.44	RNA-binding CRS1 / YhbY (CRM) domain protein	[more]
AT3G27550.1	2.4e-41	43.13	RNA-binding CRS1 / YhbY (CRM) domain protein	[more]
AT3G01370.1	1.1e-25	31.42	CRM family member 2	[more]

BLAST of Cucsa.217840 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778724321\|ref\|XP_011658783.1\|	4.4e-202	100.00	PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplasti...	[more]
gi\|659110425\|ref\|XP_008455218.1\|	1.2e-175	91.88	PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplasti...	[more]
gi\|802542415\|ref\|XP_012081307.1\|	8.8e-118	65.63	PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplasti...	[more]
gi\|955322124\|ref\|XP_014631386.1\|	2.4e-115	62.78	PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplasti...	[more]
gi\|955333068\|ref\|XP_014633880.1\|	3.5e-114	63.29	PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplasti...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001890	RNA-binding_CRM
IPR001890	RNA-binding_CRM
IPR001890	RNA-binding_CRM

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding
GO:0003723	RNA binding
GO:0003723	RNA binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.217840.1	Cucsa.217840.1	mRNA
Cucsa.217840.2	Cucsa.217840.2	mRNA
Cucsa.217840.4	Cucsa.217840.4	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001890	RNA-binding, CRM domain	GENE3D	G3DSA:3.30.110.60		coord: 198..292 score: 3.9
IPR001890	RNA-binding, CRM domain	PFAM	PF01985	CRS1_YhbY	coord: 198..282 score: 1.4
IPR001890	RNA-binding, CRM domain	SMART	SM01103	CRS1_YhbY_2	coord: 198..282 score: 2.0
IPR001890	RNA-binding, CRM domain	PROFILE	PS51295	CRM	coord: 196..293 score: 19
IPR001890	RNA-binding, CRM domain	unknown	SSF75471	YhbY-like	coord: 197..292 score: 3.27
None	No IPR available	unknown	Coil	Coil	coord: 313..347 scor
None	No IPR available	PANTHER	PTHR31426	FAMILY NOT NAMED	coord: 7..345 score: 2.4E
None	No IPR available	PANTHER	PTHR31426:SF3	SUBFAMILY NOT NAMED	coord: 7..345 score: 2.4E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.217840	Cla001845	Watermelon (97103) v1	cgywmB420
Cucsa.217840	Csa7G062730	Cucumber (Chinese Long) v2	cgycuB322
Cucsa.217840	MELO3C018653	Melon (DHL92) v3.5.1	cgymeB379
Cucsa.217840	ClCG09G015320	Watermelon (Charleston Gray)	cgywcgB391
Cucsa.217840	CSPI07G05440	Wild cucumber (PI 183967)	cgycpiB336
Cucsa.217840	CmaCh19G002610	Cucurbita maxima (Rimu)	cgycmaB0625
Cucsa.217840	CmoCh19G002820	Cucurbita moschata (Rifu)	cgycmoB0628
Cucsa.217840	Lsi03G007720	Bottle gourd (USVL1VR-Ls)	cgylsiB367
Cucsa.217840	Cp4.1LG15g02330	Cucurbita pepo (Zucchini)	cgycpeB0595
Cucsa.217840	MELO3C018653.2	Melon (DHL92) v3.6.1	cgymedB377
Cucsa.217840	CsaV3_7G006390	Cucumber (Chinese Long) v3	cgycucB342
Cucsa.217840	Cla97C09G177310	Watermelon (97103) v2	cgywmbB399
Cucsa.217840	Bhi05G000689	Wax gourd	cgywgoB445
Cucsa.217840	Carg24503	Silver-seed gourd	carcgyB1086

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.217840	Cucurbita pepo (Zucchini)	cgycpeB0602
Cucsa.217840	Cucurbita maxima (Rimu)	cgycmaB0620
Cucsa.217840	Cucurbita moschata (Rifu)	cgycmoB0624