CSPI07G05440 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI07G05440
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionRNA-binding CRS1 / YhbY (CRM) domain protein
LocationChr7 : 4072603 .. 4075017 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTTAATGAGGGTAGGGTTGTAATTTTGCCGCAATTGTTGATGAACAATCGTTGATCCTCAAATTTCATCTTAGTTAGCGAATTGTTGATGAACAATCAACACACCCATTCTTAACTCTTGGATTGTTCTTGATTTCCCTTTCATCTCCCTTAGGGGTTATTTAAAAAACGACTCTTTCCTAGGAATTTACTGATTTACTTTACGACCATGCCTCGCTGCCGCGGGTTATCTATCATCGCCTTTTCAAGGTACGTTCTTCATCTCTAGAAATCTCATGGGTTTCATTCAATGGTTTTGAAATTGAATACATTTTCTCATTTATCAAATTCATCTCAACAGTGTGTATCGTCTTGTTTAAAGTAGATTTCAGGGTTGTCTATGAGTTTTTCCATCTGTTGTGTACACATTTTCCCTTTGGAAAGCATATGGAATTGGATGATTGTGGTATGGTGTTTTTGCAGGGGTTCATTGTTTGGATTCATTCCTCTGATTAGAAATGTATCACCTCTATCTTTATTGAGCATACCCACATCATTTGAGCAGTCCTCACATGGAAGTTGGGAGCATCAAGCAAGTAGTTGTATAGTGAAGTCTCTCAACGAATCAATGTCTAGAGACTGTCCGCCTGGGTTCTCTTTTACTCGGAGATACAGTATGCGGGAGAGCAGTGGTGGGTTTAAAAGATGGCAATCTGTTAGGCATTTTAGCAATGCCGTTGTGGAGCTTAAAACAGACAACAATACTGTCAGGTTTTCTTTTGGTTGTCCTTCTAGTACTAACGGTTCCCGACTGAAACAAAAGGTGGCAAAAACCAAAATTTCTAAGAAGGCTAAATTGAATGAACTCAGATTCTATCGTCTTAAGGCGAAAAAGAAGAAGACATCTCCCAATCCAGAAGTTAGGATCAGATATTCCCTTGAGAAGGTTCGATACTATCTATAATTTTTAGTTATTCCTTTAGCTTATAATTGAGTGTAGTCTACTCTCCCTTTATAGAAAAAGTGTGTGGCCATTGTCTTGTAAGAGGAGTATTTGATTTCAGTGCCTGCTGAAAAGCTTTTTATCCACATATAATATGTTTGTGTAGCTGATTGAGTTGATTGAATTTTGATTAGCATTTCTTTGAGTAGCCGTGTCTATGTGCATGTGATAAGATGGCCAGTAACCACTGTTTCTCTGACTTCTGCTTTACACATTTGTAAAACTGTGAAAGTTTATCCTTTGGTTTAGTTCGTGTACTGACTTTGCGTGACTAATGATTTATACATACAAGTGATTGTCATCAAAGTTTAGCTTACAGTTTCATGTAAACCTTTTCTTTTTTATACGAATCATTTGTATGAACAAAAAGAAATATTTCATAGAAAATTTTCAAATGAAGAGTCAAGAATAATTTACTTAGTGTTTATACCTTCAACTCAAGGTAAGTGCATACTAATGGTTCAGTTGAATTTTGAATTAATATGTGGACTAATCGAATTGTTCTAATACTTCTTAATGATCATTTGTTCTTATGAACTATGAAGTTATTTGATCTTTGAAGAAATAAGTATTGTATGTAGGCCAAAAGAAAAGAAGCGTGGCTAATTGAGAAGTTGAGGAAATTTGAGATTCCAAAACCTTTTGTAGAAAAGTATGATCCTGAAATTCTTACTGAGGAAGAGAAGCACTACTTGAAGCGTACAGGGGAGAAAAAGAAGAACTTTGTTCTTTTGGGGAGGCGAGGAGTCTTTGGTGGAGTTGTTCTCAATATGCATATGCATTGGAAGAAGCATGAAACTGTTAAAGTTATTTGCAAACCTTGCAAGCCTGGGCAGGTTCATGAATATGCCGAAGAACTTACTCGATTGAGCAAAGGCATTGTGATTGACATAAAACCCAACAACAGCATAATTTTCTATCGGGGAAAGAACTATGTGCAGCCCGAAGTAATGTCACCTCCAAATACGCTATCAAAAGACAAGGTAAGCTGATCTCATTCCTGAAAAGTGAAATGATCAAACAAAATACATTTAATTGATTGATGTGAAAAATTACAAAAGGCAAATTAACCTACCACAGTGGAAGTTTTCAAATTCAGTTAACCACTAATCTGTAGAATTTGTCATTAATAGAATTTGGAAATAAGAAGAGTGGATCAAGAAATGGGGAATTAAATCAAACTCTGTAATTTGATTATAATGTTATGTTTTTTCAATTTGAGAAGCCATCGGAAAATGACACAACAATCAACATAACTTTTCCTATGTAAAATATTGCAGGCTTTGGAAAAATATAAGTATGAACAATCACTTGAACATACAAGCCAGTTCATTGAAAAGTTGGAGAAAGAACTTGAAGATTTTCAGAAGCATCTAGCTCAGTTCAAGAGGAGAAAGGAAGATGCCGCTTTAGAATCCATGGTTAACTCTTGA

mRNA sequence

ATGCCTCGCTGCCGCGGGTTATCTATCATCGCCTTTTCAAGGGGTTCATTGTTTGGATTCATTCCTCTGATTAGAAATGTATCACCTCTATCTTTATTGAGCATACCCACATCATTTGAGCAGTCCTCACATGGAAGTTGGGAGCATCAAGCAAGTAGTTGTATAGTGAAGTCTCTCAACGAATCAATGTCTAGAGACTGTCCGCCTGGGTTCTCTTTTACTCGGAGATACAGTATGCGGGAGAGCAGTGGTGGGTTTAAAAGATGGCAATCTGTTAGGCATTTTAGCAATGCCGTTGTGGAGCTTAAAACAGACAACAATACTGTCAGGTTTTCTTTTGGTTGTCCTTCTAGTACTAACGGTTCCCGACTGAAACAAAAGGTGGCAAAAACCAAAATTTCTAAGAAGGCTAAATTGAATGAACTCAGATTCTATCGTCTTAAGGCGAAAAAGAAGAAGACATCTCCCAATCCAGAAGTTAGGATCAGATATTCCCTTGAGAAGGCCAAAAGAAAAGAAGCGTGGCTAATTGAGAAGTTGAGGAAATTTGAGATTCCAAAACCTTTTGTAGAAAAGTATGATCCTGAAATTCTTACTGAGGAAGAGAAGCACTACTTGAAGCGTACAGGGGAGAAAAAGAAGAACTTTGTTCTTTTGGGGAGGCGAGGAGTCTTTGGTGGAGTTGTTCTCAATATGCATATGCATTGGAAGAAGCATGAAACTGTTAAAGTTATTTGCAAACCTTGCAAGCCTGGGCAGGTTCATGAATATGCCGAAGAACTTACTCGATTGAGCAAAGGCATTGTGATTGACATAAAACCCAACAACAGCATAATTTTCTATCGGGGAAAGAACTATGTGCAGCCCGAAGTAATGTCACCTCCAAATACGCTATCAAAAGACAAGGCTTTGGAAAAATATAAGTATGAACAATCACTTGAACATACAAGCCAGTTCATTGAAAAGTTGGAGAAAGAACTTGAAGATTTTCAGAAGCATCTAGCTCAGTTCAAGAGGAGAAAGGAAGATGCCGCTTTAGAATCCATGGTTAACTCTTGA

Coding sequence (CDS)

ATGCCTCGCTGCCGCGGGTTATCTATCATCGCCTTTTCAAGGGGTTCATTGTTTGGATTCATTCCTCTGATTAGAAATGTATCACCTCTATCTTTATTGAGCATACCCACATCATTTGAGCAGTCCTCACATGGAAGTTGGGAGCATCAAGCAAGTAGTTGTATAGTGAAGTCTCTCAACGAATCAATGTCTAGAGACTGTCCGCCTGGGTTCTCTTTTACTCGGAGATACAGTATGCGGGAGAGCAGTGGTGGGTTTAAAAGATGGCAATCTGTTAGGCATTTTAGCAATGCCGTTGTGGAGCTTAAAACAGACAACAATACTGTCAGGTTTTCTTTTGGTTGTCCTTCTAGTACTAACGGTTCCCGACTGAAACAAAAGGTGGCAAAAACCAAAATTTCTAAGAAGGCTAAATTGAATGAACTCAGATTCTATCGTCTTAAGGCGAAAAAGAAGAAGACATCTCCCAATCCAGAAGTTAGGATCAGATATTCCCTTGAGAAGGCCAAAAGAAAAGAAGCGTGGCTAATTGAGAAGTTGAGGAAATTTGAGATTCCAAAACCTTTTGTAGAAAAGTATGATCCTGAAATTCTTACTGAGGAAGAGAAGCACTACTTGAAGCGTACAGGGGAGAAAAAGAAGAACTTTGTTCTTTTGGGGAGGCGAGGAGTCTTTGGTGGAGTTGTTCTCAATATGCATATGCATTGGAAGAAGCATGAAACTGTTAAAGTTATTTGCAAACCTTGCAAGCCTGGGCAGGTTCATGAATATGCCGAAGAACTTACTCGATTGAGCAAAGGCATTGTGATTGACATAAAACCCAACAACAGCATAATTTTCTATCGGGGAAAGAACTATGTGCAGCCCGAAGTAATGTCACCTCCAAATACGCTATCAAAAGACAAGGCTTTGGAAAAATATAAGTATGAACAATCACTTGAACATACAAGCCAGTTCATTGAAAAGTTGGAGAAAGAACTTGAAGATTTTCAGAAGCATCTAGCTCAGTTCAAGAGGAGAAAGGAAGATGCCGCTTTAGAATCCATGGTTAACTCTTGA
Homology
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BLAST of CSPI07G05440 vs. Swiss-Prot
Match: Y3544_ARATH (Uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Arabidopsis thaliana GN=At3g25440 PE=2 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 5.7e-40
Identity = 103/239 (43.10%), Postives = 150/239 (62.76%), Query Frame = 1 

Query: 103 KTDNNTVRFSFGCPSSTNGSRLKQKVAKTKISKKAKLNELRFYRLKAKKKKTSPNPEVRI 162
           K++N++ +    C      ++LK+K  K    K+A +  L+F+R K KK+      E +I
Sbjct: 91  KSENSSSQDGDSC------TKLKRKKLK---GKRAVVRWLKFFRWKKKKEFERMTSEEKI 150

Query: 163 RYSLEKAKRKEAWLIEKLRKFEIPKPFVEKYDPEILTEEEKHYLKRTGEKKKNFVLLGRR 222
              L KA++KE  L+E ++K E  +     +DPEILT EE  Y  + G K KN+V +GRR
Sbjct: 151 LNKLRKARKKEERLMETMKKLEPSESAETTHDPEILTPEEHFYYLKMGLKCKNYVPVGRR 210

Query: 223 GVFGGVVLNMHMHWKKHETVKVICKPCKPGQVHEYAEELTRLSKGIVIDIKPNNSIIFYR 282
           G++ GV+LNMH+HWKKH+T++V+ K   P +V E A EL RL+ GIV+D+   N+II YR
Sbjct: 211 GIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVELARLTGGIVLDVHEGNTIIMYR 270

Query: 283 GKNYVQP--EVMSPPNTLSKDKALEKYKYEQSLEHTSQFIEKLEKELEDFQKHLAQFKR 340
           GKNYVQP  E+MSP  TL + KAL+K K   +L    ++I +LE+EL+  Q   A+ KR
Sbjct: 271 GKNYVQPPTEIMSPRITLPRKKALDKSKCRDALRAVRKYIPRLEQELQLLQAQ-AETKR 319

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BLAST of CSPI07G05440 vs. Swiss-Prot
Match: CFM2_ARATH (CRM-domain containing factor CFM2, chloroplastic OS=Arabidopsis thaliana GN=CFM2 PE=1 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.3e-20
Identity = 72/226 (31.86%), Postives = 120/226 (53.10%), Query Frame = 1 

Query: 120 NGSRLKQKVAKTKISKKAK--LNELRFYRLKAKKKKTSP----NPEVRIRYSLEKAKRKE 179
           N   +K +  K  I  +AK   + ++ +++K++++ +         +++  +LEK    E
Sbjct: 498 NEEEIKPRAVKEDIELEAKDQKDHIQTHQMKSRQRNSPEAILEKTSMKLSMALEKKANAE 557

Query: 180 AWLIEKLRKFEIPKPFVEKYDPEILTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLNMH 239
             L + L   E P+  +   D E +T +EK+ L++ G K K F+LLGRRGVF G + NMH
Sbjct: 558 KVLAD-LENRESPQ--LSDIDKEGITNDEKYMLRKIGLKMKPFLLLGRRGVFDGTIENMH 617

Query: 240 MHWKKHETVKVICKPCKPGQVHEYAEELTRLSKGIVIDIK---PNNSIIFYRGKNYVQPE 299
           +HWK  E VK+IC        H+ AE L   S GI++ ++      +II YRGKNY +P+
Sbjct: 618 LHWKYRELVKIICNEYSIEAAHKVAEILEAESGGILVAVEMVSKGYAIIVYRGKNYERPQ 677

Query: 300 VMSPPNTLSKDKALEKYKYEQSLEHTSQFIEKLEKELEDFQKHLAQ 337
            + P   LSK +AL++    Q  +     + KL   +E+  + L +
Sbjct: 678 CLRPQTLLSKREALKRSVEAQRRKSLKLHVLKLSNNIEELNRQLVE 720

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BLAST of CSPI07G05440 vs. Swiss-Prot
Match: CFM3_ORYSJ (CRM-domain containing factor CFM3, chloroplastic/mitochondrial OS=Oryza sativa subsp. japonica GN=CFM3 PE=3 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 6.5e-20
Identity = 66/191 (34.55%), Postives = 101/191 (52.88%), Query Frame = 1 

Query: 161 RIRYSLEKAKRKEAWLIEKLRKFEIP-KPFVEKYDPEILTEEEKHYLKRTGEKKKNFVLL 220
           ++ + L+ A++K       L K E   KP      PE +T+EE+   ++ G + K F+LL
Sbjct: 554 KLEWKLQLAQKKIEKAERVLGKVETALKPTEGIQPPETITDEERFMFRKLGLRMKAFLLL 613

Query: 221 GRRGVFGGVVLNMHMHWKKHETVKVICKPCKPGQVHEYAEELTRLSKGIVID---IKPNN 280
           GRRGVF G + NMH+HWK  E VK++ K    G V + A  L   S GI++    +    
Sbjct: 614 GRRGVFDGTIENMHLHWKYRELVKILVKAKSFGDVKKIALSLEAESGGILVSVDKVSKGY 673

Query: 281 SIIFYRGKNYVQPEVMSPPNTLSKDKALEKYKYEQSLEHTSQFIEKLEKELEDFQKHLAQ 340
           +I+ +RGK+Y +P  + P N LSK KAL +    Q  E  S  I  L + ++  +  L Q
Sbjct: 674 AIVVFRGKDYARPSKLRPRNLLSKRKALARSIEIQRREALSHHIATLNRRVKKLKAELLQ 733

Query: 341 FKRRKEDAALE 348
            +  KE+  +E
Sbjct: 734 MEGVKEEGDVE 744

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BLAST of CSPI07G05440 vs. Swiss-Prot
Match: CFM3_MAIZE (CRM-domain containing factor CFM3, chloroplastic/mitochondrial OS=Zea mays GN=CFM3 PE=1 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.5e-19
Identity = 65/180 (36.11%), Postives = 96/180 (53.33%), Query Frame = 1 

Query: 166 LEKAKRKEAWLIEKLRKFEIPKPFVEKYDPEILTEEEKHYLKRTGEKKKNFVLLGRRGVF 225
           +EKA+R    +   LR  E  +P      PE +T+EE+   ++ G + K F+LLGRRGVF
Sbjct: 558 MEKAERVLGKVETALRPTEDSRP------PETITDEERFMFRKLGLRMKAFLLLGRRGVF 617

Query: 226 GGVVLNMHMHWKKHETVKVICKPCKPGQVHEYAEELTRLSKGIVID---IKPNNSIIFYR 285
            G + NMH+HWK  E VK++ K      V   A  L   S GI++    +    +I+ +R
Sbjct: 618 DGTIENMHLHWKYRELVKILVKAKSFADVKRIALSLEAESGGILVSVDKVSKGYAIVVFR 677

Query: 286 GKNYVQPEVMSPPNTLSKDKALEKYKYEQSLEHTSQFIEKLEKELEDFQKHLAQFKRRKE 343
           GKNY +P  + P N LSK KAL +    Q  +  S+   KL +++E  +  L Q +  KE
Sbjct: 678 GKNYRRPSSLRPRNLLSKRKALARSIELQRHQALSRHFAKLNRKVERLKAELVQMEDVKE 731

[Close]
BLAST of CSPI07G05440 vs. Swiss-Prot
Match: CFM3A_ARATH (CRM-domain containing factor CFM3A, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=CFM3A PE=2 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.5e-19
Identity = 71/185 (38.38%), Postives = 100/185 (54.05%), Query Frame = 1 

Query: 166 LEKAKRKEAWLIEKLRKFE--------IPKPFVEKYDPEILTEEEKHYLKRTGEKKKNFV 225
           + K +RK A+   KL K E          KP  ++ DPE +T+EE+   ++ G K K F+
Sbjct: 598 VRKLERKLAFAERKLLKAERGLAKVEVCLKPAEQREDPESITDEERFMFRKLGLKMKAFL 657

Query: 226 LLGRRGVFGGVVLNMHMHWKKHETVKVICKPCKPGQVHEYAEELTRLSKGIVIDI---KP 285
           LLGRRGVF G V NMH+HWK  E VK+I K      V + A  L   S GI++ I     
Sbjct: 658 LLGRRGVFDGTVENMHLHWKYRELVKIIVKAKTFDGVKKVALALEAESGGILVSIDKVTK 717

Query: 286 NNSIIFYRGKNYVQPEVMSPPNTLSKDKAL----EKYKYEQSLEHTSQF---IEKLEKEL 333
             +II YRG++Y +P ++ P N L+K KAL    E  + E  L+H S      ++L  E+
Sbjct: 718 GYAIIVYRGQDYKRPTMLRPKNLLTKRKALARSIELQRREGLLKHISTMQAKAKQLRAEI 777

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BLAST of CSPI07G05440 vs. TrEMBL
Match: A0A0A0K5Y2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G062730 PE=4 SV=1)

HSP 1 Score: 694.9 bits (1792), Expect = 5.1e-197
Identity = 351/352 (99.72%), Postives = 352/352 (100.00%), Query Frame = 1 

Query: 1   MPRCRGLSIIAFSRGSLFGFIPLIRNVSPLSLLSIPTSFEQSSHGSWEHQASSCIVKSLN 60
           MPRCRGLSIIAFSRGSLFGFIPLIRNVSPLSLLSIPTSFEQSSHGSWEHQASSCIVKSLN
Sbjct: 1   MPRCRGLSIIAFSRGSLFGFIPLIRNVSPLSLLSIPTSFEQSSHGSWEHQASSCIVKSLN 60

Query: 61  ESMSRDCPPGFSFTRRYSMRESSGGFKRWQSVRHFSNAVVELKTDNNTVRFSFGCPSSTN 120
           ESMSRDCPPGFSFTRRYSMRESSGGFKRWQSVRHFSNAVVELKTDNNTVRFSFGCPSSTN
Sbjct: 61  ESMSRDCPPGFSFTRRYSMRESSGGFKRWQSVRHFSNAVVELKTDNNTVRFSFGCPSSTN 120

Query: 121 GSRLKQKVAKTKISKKAKLNELRFYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLIEKL 180
           GSRLKQKVAKTK+SKKAKLNELRFYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLIEKL
Sbjct: 121 GSRLKQKVAKTKMSKKAKLNELRFYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLIEKL 180

Query: 181 RKFEIPKPFVEKYDPEILTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLNMHMHWKKHE 240
           RKFEIPKPFVEKYDPEILTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLNMHMHWKKHE
Sbjct: 181 RKFEIPKPFVEKYDPEILTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLNMHMHWKKHE 240

Query: 241 TVKVICKPCKPGQVHEYAEELTRLSKGIVIDIKPNNSIIFYRGKNYVQPEVMSPPNTLSK 300
           TVKVICKPCKPGQVHEYAEELTRLSKGIVIDIKPNNSIIFYRGKNYVQPEVMSPPNTLSK
Sbjct: 241 TVKVICKPCKPGQVHEYAEELTRLSKGIVIDIKPNNSIIFYRGKNYVQPEVMSPPNTLSK 300

Query: 301 DKALEKYKYEQSLEHTSQFIEKLEKELEDFQKHLAQFKRRKEDAALESMVNS 353
           DKALEKYKYEQSLEHTSQFIEKLEKELEDFQKHLAQFKRRKEDAALESMVNS
Sbjct: 301 DKALEKYKYEQSLEHTSQFIEKLEKELEDFQKHLAQFKRRKEDAALESMVNS 352

[Close]
BLAST of CSPI07G05440 vs. TrEMBL
Match: A0A067LDM8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09572 PE=4 SV=1)

HSP 1 Score: 413.7 bits (1062), Expect = 2.3e-112
Identity = 230/352 (65.34%), Postives = 264/352 (75.00%), Query Frame = 1 

Query: 12  FSRGSLFGFIPLIRN--VSPLSLLSIPTSFEQSSHGSWEHQASSCIVKSLNESMS----- 71
           F+ GS+ G   L  N  V   SL+ +   F+Q S+ S  H+A+S +   LN + S     
Sbjct: 3   FAIGSIRGRTNLGHNYIVKRESLVLLSFLFQQGSNLSSLHKATS-VTPLLNWTTSVNLRS 62

Query: 72  -----------RDCPPGFSFTRRYSMRESSGGFKRWQSVRHFSNAVVELKTDNNTVRFSF 131
                      R   P F  T+R ++  S    + W   R  S A  ELKTDN+ VRF+F
Sbjct: 63  YRAVIPFLEAVRVSSPNFLLTQRLNVFASHSVLRSWVYRRWMSRASFELKTDNDVVRFAF 122

Query: 132 GCPSSTNGSRLKQK--VAKTKISKKAKLNELRFYRLKAKKKKTSPNPEVRIRYSLEKAKR 191
           G     NGS  K+K    + K+S+KAKLNELRFYRLKAKKKK SPNPEVRIRY LEKAKR
Sbjct: 123 GKQPGKNGSSEKRKKTTKRVKMSRKAKLNELRFYRLKAKKKKNSPNPEVRIRYKLEKAKR 182

Query: 192 KEAWLIEKLRKFEIPKPFVEKYDPEILTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLN 251
           KE WLIEKLRKFE+PK   E YDPEILTEEEKHYLKRTGEKKKNFVL+GRRGVFGGVVLN
Sbjct: 183 KEVWLIEKLRKFEVPKIPAEVYDPEILTEEEKHYLKRTGEKKKNFVLVGRRGVFGGVVLN 242

Query: 252 MHMHWKKHETVKVICKPCKPGQVHEYAEELTRLSKGIVIDIKPNNSIIFYRGKNYVQPEV 311
           MH+HWKKHETVKVIC+PCKPGQ+HEYAEEL RLSKGIVIDIKPNNSI+FYRGKNYVQPEV
Sbjct: 243 MHLHWKKHETVKVICRPCKPGQIHEYAEELARLSKGIVIDIKPNNSIVFYRGKNYVQPEV 302

Query: 312 MSPPNTLSKDKALEKYKYEQSLEHTSQFIEKLEKELEDFQKHLAQFKRRKED 344
           MSPPNTLSK KALEKYKYEQSLEHTSQFIEKLEKELE++ +H+A++++ KED
Sbjct: 303 MSPPNTLSKQKALEKYKYEQSLEHTSQFIEKLEKELEEYLEHVARYRKLKED 353

[Close]
BLAST of CSPI07G05440 vs. TrEMBL
Match: K7KRJ8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_05G236500 PE=4 SV=1)

HSP 1 Score: 406.4 bits (1043), Expect = 3.6e-110
Identity = 220/352 (62.50%), Postives = 256/352 (72.73%), Query Frame = 1 

Query: 5   RGLSIIAFSRGSLFGFIPLIRNVSPLSLLSIPTSFEQSSHGSWEHQASSCIVKS------ 64
           RG S   F+R SLF    L+ +V  ++     TS+       W      CI +       
Sbjct: 12  RGFSC-TFNRDSLFWLCCLVEHVPTIASCPTTTSY------FWSFTPDKCIYQRTYRTPS 71

Query: 65  -LNESMSRDCPPGFSFTRRYSMRESSGGFKRWQSVRHFSNAVVELKTDNNTVRFSFGCPS 124
            L+   S     GF   +R ++  S      W   R+ SN  VELKT N+ +RFS G   
Sbjct: 72  HLSGVSSLASRSGFLLMQRSNIFGSHDILGSWLPARYISNESVELKTHNDVIRFSLGKSD 131

Query: 125 STNGSRLKQKVAKTKISKKAKLNELRFYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLI 184
             N ++  Q   K K+S+KAKLNELRFYRLKAKKK  SPNPEVRIRY LEKAKRKE WLI
Sbjct: 132 DINNAKKSQLNKKFKMSRKAKLNELRFYRLKAKKKMNSPNPEVRIRYKLEKAKRKETWLI 191

Query: 185 EKLRKFEIPKPFVEKYDPEILTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLNMHMHWK 244
           EKLRKF++PKP  E YDPEILTEEE+HYLKRTGE+KK++V +GRRGVFGGVVLNMH+HWK
Sbjct: 192 EKLRKFDVPKPPPETYDPEILTEEERHYLKRTGERKKHYVPVGRRGVFGGVVLNMHLHWK 251

Query: 245 KHETVKVICKPCKPGQVHEYAEELTRLSKGIVIDIKPNNSIIFYRGKNYVQPEVMSPPNT 304
            HETVKVICKPCKPGQVHEYAEEL RLSKGIVIDIKPNN+IIFYRGKNYV+PEVMSPPNT
Sbjct: 252 NHETVKVICKPCKPGQVHEYAEELARLSKGIVIDIKPNNTIIFYRGKNYVKPEVMSPPNT 311

Query: 305 LSKDKALEKYKYEQSLEHTSQFIEKLEKELEDFQKHLAQFKRRKEDAALESM 350
           LSK KALEKY+YEQSLEHTSQFIEKLEKELE++ +HLA+FK+ KED A + +
Sbjct: 312 LSKAKALEKYRYEQSLEHTSQFIEKLEKELEEYHQHLAKFKKGKEDTAKDGL 356

[Close]
BLAST of CSPI07G05440 vs. TrEMBL
Match: K7L4Y2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_08G043700 PE=4 SV=1)

HSP 1 Score: 402.1 bits (1032), Expect = 6.8e-109
Identity = 218/346 (63.01%), Postives = 255/346 (73.70%), Query Frame = 1 

Query: 5   RGLSIIAFSRGSLFGFIPLIRNVSPLSLLSIPTSFEQS-SHGSWEHQASSCIVKSLNESM 64
           RG S   F+R SLF    L+ +V  ++     TS+  S +     HQ +    + L+   
Sbjct: 12  RGFSC-TFNRDSLFWLCCLVEHVPTIASSPTTTSYFWSFTPDKCIHQRTYRTPRHLSRVP 71

Query: 65  SRDCPPGFSFTRRYSMRESSGGFKRWQSVRHFSNAVVELKTDNNTVRFSFGCPSSTNGSR 124
           S    PGF   +R ++         W   R+ SN  VELKTDNN VRFS       N  +
Sbjct: 72  SLSSRPGFLLMQRSNIFGIHDILGNWLPARYISNESVELKTDNNVVRFSLDKSDDINYGK 131

Query: 125 LKQKVAKTKISKKAKLNELRFYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLIEKLRKF 184
             Q   + K+S+KAKLNELRFYRLKAKKK  SPNPEVRI Y LEKAKRKE WL+EKLRKF
Sbjct: 132 KSQLNKRVKMSRKAKLNELRFYRLKAKKKMISPNPEVRITYKLEKAKRKETWLVEKLRKF 191

Query: 185 EIPKPFVEKYDPEILTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLNMHMHWKKHETVK 244
           ++PK   E +DPEILTEEE+HYLKRTGEKKK++V +GRRGVFGGVVLNMH+HWK HETVK
Sbjct: 192 DVPKSPPETFDPEILTEEERHYLKRTGEKKKHYVPVGRRGVFGGVVLNMHLHWKNHETVK 251

Query: 245 VICKPCKPGQVHEYAEELTRLSKGIVIDIKPNNSIIFYRGKNYVQPEVMSPPNTLSKDKA 304
           VICKPCKPGQVHEYAEEL RLSKGIVIDIKPNN+IIFYRGKNYVQPEVMSPPNTLSK KA
Sbjct: 252 VICKPCKPGQVHEYAEELARLSKGIVIDIKPNNTIIFYRGKNYVQPEVMSPPNTLSKVKA 311

Query: 305 LEKYKYEQSLEHTSQFIEKLEKELEDFQKHLAQFKRRKEDAALESM 350
           LEKY+YEQSLEHTSQFIE+LEKELE++ +HLA+FK+ KED A + +
Sbjct: 312 LEKYRYEQSLEHTSQFIERLEKELEEYHQHLAKFKKGKEDNAKDGL 356

[Close]
BLAST of CSPI07G05440 vs. TrEMBL
Match: A0A0B2Q5J0_GLYSO (Putative CRM domain-containing protein, chloroplastic OS=Glycine soja GN=glysoja_002652 PE=4 SV=1)

HSP 1 Score: 401.4 bits (1030), Expect = 1.2e-108
Identity = 218/342 (63.74%), Postives = 253/342 (73.98%), Query Frame = 1 

Query: 5   RGLSIIAFSRGSLFGFIPLIRNVSPLSLLSIPTSFEQS-SHGSWEHQASSCIVKSLNESM 64
           RG S   F+R SLF    L+ +V  ++     TS+  S +     HQ +    + L+   
Sbjct: 12  RGFSC-TFNRDSLFWLCCLVEHVPTIASSPTTTSYFWSFTPDKCIHQRTYRTPRHLSRVP 71

Query: 65  SRDCPPGFSFTRRYSMRESSGGFKRWQSVRHFSNAVVELKTDNNTVRFSFGCPSSTNGSR 124
           S    PGF   +R ++         W   R+ SN  VELKTDNN VRFS       N  +
Sbjct: 72  SLSSRPGFLLMQRSNIFGIHDILGNWLPARYISNESVELKTDNNVVRFSLDKSDDINYGK 131

Query: 125 LKQKVAKTKISKKAKLNELRFYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLIEKLRKF 184
             Q   + K+S+KAKLNELRFYRLKAKKK  SPNPEVRI Y LEKAKRKE WL+EKLRKF
Sbjct: 132 KSQLNKRVKMSRKAKLNELRFYRLKAKKKMISPNPEVRITYKLEKAKRKETWLVEKLRKF 191

Query: 185 EIPKPFVEKYDPEILTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLNMHMHWKKHETVK 244
           ++PK   E +DPEILTEEE+HYLKRTGEKKK++V +GRRGVFGGVVLNMH+HWK HETVK
Sbjct: 192 DVPKSPPETFDPEILTEEERHYLKRTGEKKKHYVPVGRRGVFGGVVLNMHLHWKNHETVK 251

Query: 245 VICKPCKPGQVHEYAEELTRLSKGIVIDIKPNNSIIFYRGKNYVQPEVMSPPNTLSKDKA 304
           VICKPCKPGQVHEYAEEL RLSKGIVIDIKPNN+IIFYRGKNYVQPEVMSPPNTLSK KA
Sbjct: 252 VICKPCKPGQVHEYAEELARLSKGIVIDIKPNNTIIFYRGKNYVQPEVMSPPNTLSKVKA 311

Query: 305 LEKYKYEQSLEHTSQFIEKLEKELEDFQKHLAQFKRRKEDAA 346
           LEKY+YEQSLEHTSQFIE+LEKELE++ +HLA+FK+ KED A
Sbjct: 312 LEKYRYEQSLEHTSQFIERLEKELEEYHQHLAKFKKGKEDNA 352

[Close]
BLAST of CSPI07G05440 vs. TAIR10
Match: AT4G13070.1 (AT4G13070.1 RNA-binding CRS1 / YhbY (CRM) domain protein)

HSP 1 Score: 376.7 bits (966), Expect = 1.6e-104
Identity = 193/279 (69.18%), Postives = 235/279 (84.23%), Query Frame = 1 

Query: 72  SFTRRYSMRESSGGFKRWQSVRHFSNAVVELKTDNNTVRFSFGCPSSTNGS----RLKQK 131
           S  +R+++    G F R    R+ SN+ +EL+TD+N VRF+F   SS+  +    R ++K
Sbjct: 56  SQAQRWNLFAYDGLFSR----RYLSNSTIELRTDDNVVRFAFNNVSSSGNNVVPTRKEKK 115

Query: 132 VAKTKISKKAKLNELRFYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLIEKLRKFEIPK 191
             + K+S+KAK+NELRFYRLKAKKK  SPNPEVRIRY LEKAKRKE WLIEKLRK+++PK
Sbjct: 116 WKRAKLSRKAKVNELRFYRLKAKKKMNSPNPEVRIRYKLEKAKRKEEWLIEKLRKYDVPK 175

Query: 192 PFVEKYDPEILTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLNMHMHWKKHETVKVICK 251
              E YDPE LTEEE+HYLKRTGEK+KNFVL+GRRGVFGGVVLN+H+HWKKHETVKVICK
Sbjct: 176 SPAEPYDPESLTEEEQHYLKRTGEKRKNFVLVGRRGVFGGVVLNLHLHWKKHETVKVICK 235

Query: 252 PC-KPGQVHEYAEELTRLSKGIVIDIKPNNSIIFYRGKNYVQPEVMSPPNTLSKDKALEK 311
           PC KPGQVHEYAEEL RLSKGIVID+KPNN+I+ YRGKNYV+PEVMSP +TLSKDKALEK
Sbjct: 236 PCNKPGQVHEYAEELARLSKGIVIDVKPNNTIVLYRGKNYVRPEVMSPVDTLSKDKALEK 295

Query: 312 YKYEQSLEHTSQFIEKLEKELEDFQKHLAQFKRRKEDAA 346
           Y+YEQSLEHTS+FIEKLEKELE++ K++A+ K++K++ A
Sbjct: 296 YRYEQSLEHTSEFIEKLEKELEEYHKYVARHKKKKDEEA 330

[Close]
BLAST of CSPI07G05440 vs. TAIR10
Match: AT2G28480.1 (AT2G28480.1 RNA-binding CRS1 / YhbY (CRM) domain protein)

HSP 1 Score: 211.8 bits (538), Expect = 6.6e-55
Identity = 119/216 (55.09%), Postives = 154/216 (71.30%), Query Frame = 1 

Query: 123 RLKQKVAKTKISKKA-KLNELRFYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLIEKLR 182
           RLK K  K +  + A    + R   +K KKKK   N E RI+Y LEKAK KEA LIE+L+
Sbjct: 89  RLKLKRKKEREERNAANRKDPRRLTVKGKKKKFV-NAEERIKYKLEKAKIKEALLIERLK 148

Query: 183 KFEIPKPFVEKYDPEILTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLNMHMHWKKHET 242
           ++E+ K    +  P  +T EE+ YLK+ G+K+ N+V +GRRGVFGGV+LNMH+HWKKHET
Sbjct: 149 RYEVAKVQGPEVRPHEITGEERFYLKKMGQKRSNYVPIGRRGVFGGVILNMHLHWKKHET 208

Query: 243 VKVICKPCKPGQVHEYAEELTRLSKGIVIDIKPNNSIIFYRGKNYVQPEVMSPPNTLSKD 302
           VKVIC   KPGQV +YAEEL +LS G+ ++I  +++IIFYRGK YVQP+VMSP +TLSK 
Sbjct: 209 VKVICNNSKPGQVQQYAEELAKLSGGVPVNIIGDDTIIFYRGKGYVQPQVMSPIDTLSKK 268

Query: 303 KALEKYKYEQSLEHTSQFIEKLEKELEDFQKHLAQF 338
           +A EK KYEQSLE    FI   EKELE + +H+A +
Sbjct: 269 RAYEKSKYEQSLESVRHFIAIAEKELELYYRHVALY 303

[Close]
BLAST of CSPI07G05440 vs. TAIR10
Match: AT3G25440.1 (AT3G25440.1 RNA-binding CRS1 / YhbY (CRM) domain protein)

HSP 1 Score: 166.4 bits (420), Expect = 3.2e-41
Identity = 103/239 (43.10%), Postives = 150/239 (62.76%), Query Frame = 1 

Query: 103 KTDNNTVRFSFGCPSSTNGSRLKQKVAKTKISKKAKLNELRFYRLKAKKKKTSPNPEVRI 162
           K++N++ +    C      ++LK+K  K    K+A +  L+F+R K KK+      E +I
Sbjct: 91  KSENSSSQDGDSC------TKLKRKKLK---GKRAVVRWLKFFRWKKKKEFERMTSEEKI 150

Query: 163 RYSLEKAKRKEAWLIEKLRKFEIPKPFVEKYDPEILTEEEKHYLKRTGEKKKNFVLLGRR 222
              L KA++KE  L+E ++K E  +     +DPEILT EE  Y  + G K KN+V +GRR
Sbjct: 151 LNKLRKARKKEERLMETMKKLEPSESAETTHDPEILTPEEHFYYLKMGLKCKNYVPVGRR 210

Query: 223 GVFGGVVLNMHMHWKKHETVKVICKPCKPGQVHEYAEELTRLSKGIVIDIKPNNSIIFYR 282
           G++ GV+LNMH+HWKKH+T++V+ K   P +V E A EL RL+ GIV+D+   N+II YR
Sbjct: 211 GIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVELARLTGGIVLDVHEGNTIIMYR 270

Query: 283 GKNYVQP--EVMSPPNTLSKDKALEKYKYEQSLEHTSQFIEKLEKELEDFQKHLAQFKR 340
           GKNYVQP  E+MSP  TL + KAL+K K   +L    ++I +LE+EL+  Q   A+ KR
Sbjct: 271 GKNYVQPPTEIMSPRITLPRKKALDKSKCRDALRAVRKYIPRLEQELQLLQAQ-AETKR 319

[Close]
BLAST of CSPI07G05440 vs. TAIR10
Match: AT3G27550.1 (AT3G27550.1 RNA-binding CRS1 / YhbY (CRM) domain protein)

HSP 1 Score: 152.9 bits (385), Expect = 3.7e-37
Identity = 91/211 (43.13%), Postives = 132/211 (62.56%), Query Frame = 1 

Query: 117 SSTNGSRLKQKVAKTKISKKAKLNELRFYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWL 176
           S++ G  ++ KV      +  K   LR  R   K KK     E R+ Y+L++AK+K A L
Sbjct: 13  STSRGRSMRSKVESRMRKESGKT--LREIRRAKKLKKKLMTDEERLIYNLKRAKKKVALL 72

Query: 177 IEKLRKFEIPKPFVEKYDPEILTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLNMHMHW 236
           ++KL+K+++P+     +DPE+ T E+    K+ G K KN+V +G RGVFGGVV NMHMHW
Sbjct: 73  LQKLKKYDLPELPSPVHDPELFTSEQVQAFKKIGFKNKNYVPVGVRGVFGGVVQNMHMHW 132

Query: 237 KKHETVKVICKPCKPGQVHEYAEELTRLSKGIVIDIKPNNSIIFYRGKNYVQPEVMSPPN 296
           K HETV+V C      ++ E A  + RLS G+VI+I    +II +RG+NY QP+ + P N
Sbjct: 133 KFHETVQVCCDNFPKEKIKEMASMIARLSGGVVINIHNVKTIIMFRGRNYRQPKNLIPVN 192

Query: 297 TLSKDKALEKYKYEQSLEHTSQFIEKLEKEL 328
           TL+K KAL K ++EQ+LE     I+K E++L
Sbjct: 193 TLTKRKALFKARFEQALESQKLNIKKTEQQL 221

[Close]
BLAST of CSPI07G05440 vs. TAIR10
Match: AT3G18390.1 (AT3G18390.1 CRS1 / YhbY (CRM) domain-containing protein)

HSP 1 Score: 102.4 bits (254), Expect = 5.7e-22
Identity = 68/178 (38.20%), Postives = 99/178 (55.62%), Query Frame = 1 

Query: 161 RIRYSLEKAKRKEAWLIEKLRKFEIPK-PFVEKYDPEILTEEEKHYLKRTGEKKKNFVLL 220
           RI++ L  A+ K     + L K E    P    YD E+++EEE+   ++ G K K ++ +
Sbjct: 615 RIQHKLNLAQSKFQRAEKLLSKIEASMIPNGPDYDQEVISEEERAMFRKVGLKMKAYLPI 674

Query: 221 GRRGVFGGVVLNMHMHWKKHETVKVICKPCKPGQVHEYAEELTRLSKGIVIDIK---PNN 280
           G RGVF GV+ NMH+HWK  E VK+I K      V E A  L   S G+++ I+      
Sbjct: 675 GIRGVFDGVIENMHLHWKHRELVKLISKQKNQAFVEETARLLEYESGGVLVAIEKVPKGF 734

Query: 281 SIIFYRGKNYVQPEVMSPPNTLSKDKALEKYKYEQSLEHTSQFIEKLEKELEDFQKHL 335
           ++I+YRGKNY +P  + P N L+K KAL++    Q  E  SQ I +LE+ +E  Q  L
Sbjct: 735 ALIYYRGKNYRRPISLRPRNLLTKAKALKRSIAMQRHEALSQHISELERTIEQMQSQL 792

[Close]
BLAST of CSPI07G05440 vs. NCBI nr
Match: gi|778724321|ref|XP_011658783.1| (PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Cucumis sativus])

HSP 1 Score: 694.9 bits (1792), Expect = 7.3e-197
Identity = 351/352 (99.72%), Postives = 352/352 (100.00%), Query Frame = 1 

Query: 1   MPRCRGLSIIAFSRGSLFGFIPLIRNVSPLSLLSIPTSFEQSSHGSWEHQASSCIVKSLN 60
           MPRCRGLSIIAFSRGSLFGFIPLIRNVSPLSLLSIPTSFEQSSHGSWEHQASSCIVKSLN
Sbjct: 1   MPRCRGLSIIAFSRGSLFGFIPLIRNVSPLSLLSIPTSFEQSSHGSWEHQASSCIVKSLN 60

Query: 61  ESMSRDCPPGFSFTRRYSMRESSGGFKRWQSVRHFSNAVVELKTDNNTVRFSFGCPSSTN 120
           ESMSRDCPPGFSFTRRYSMRESSGGFKRWQSVRHFSNAVVELKTDNNTVRFSFGCPSSTN
Sbjct: 61  ESMSRDCPPGFSFTRRYSMRESSGGFKRWQSVRHFSNAVVELKTDNNTVRFSFGCPSSTN 120

Query: 121 GSRLKQKVAKTKISKKAKLNELRFYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLIEKL 180
           GSRLKQKVAKTK+SKKAKLNELRFYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLIEKL
Sbjct: 121 GSRLKQKVAKTKMSKKAKLNELRFYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLIEKL 180

Query: 181 RKFEIPKPFVEKYDPEILTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLNMHMHWKKHE 240
           RKFEIPKPFVEKYDPEILTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLNMHMHWKKHE
Sbjct: 181 RKFEIPKPFVEKYDPEILTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLNMHMHWKKHE 240

Query: 241 TVKVICKPCKPGQVHEYAEELTRLSKGIVIDIKPNNSIIFYRGKNYVQPEVMSPPNTLSK 300
           TVKVICKPCKPGQVHEYAEELTRLSKGIVIDIKPNNSIIFYRGKNYVQPEVMSPPNTLSK
Sbjct: 241 TVKVICKPCKPGQVHEYAEELTRLSKGIVIDIKPNNSIIFYRGKNYVQPEVMSPPNTLSK 300

Query: 301 DKALEKYKYEQSLEHTSQFIEKLEKELEDFQKHLAQFKRRKEDAALESMVNS 353
           DKALEKYKYEQSLEHTSQFIEKLEKELEDFQKHLAQFKRRKEDAALESMVNS
Sbjct: 301 DKALEKYKYEQSLEHTSQFIEKLEKELEDFQKHLAQFKRRKEDAALESMVNS 352

[Close]
BLAST of CSPI07G05440 vs. NCBI nr
Match: gi|659110425|ref|XP_008455218.1| (PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Cucumis melo])

HSP 1 Score: 607.8 bits (1566), Expect = 1.2e-170
Identity = 317/345 (91.88%), Postives = 324/345 (93.91%), Query Frame = 1 

Query: 1   MPRCRGLSIIAFSRGSLFGFIPLIRNVSPLSLLSIPTSFEQSSHGSWEHQASSCIVKSLN 60
           MPRCRG SII  SRGSLFGF  LIRN SPLSLLS+PTSF QSSHGS EHQASS IVKSLN
Sbjct: 1   MPRCRGQSIITISRGSLFGFTSLIRNASPLSLLSVPTSFGQSSHGSCEHQASSRIVKSLN 60

Query: 61  ESMSRDCPPGFSFTRRYSMRESSGGFKRWQSVRHFSNAVVELKTDNNTVRFSFGCPSSTN 120
           ES SRDCPPG S T RYSM ES GGFKRWQSVRHFSNAVVELKTD+NTVRFSFG PSSTN
Sbjct: 61  ESTSRDCPPGSSLTWRYSMWESYGGFKRWQSVRHFSNAVVELKTDSNTVRFSFG-PSSTN 120

Query: 121 GSRLKQ-KVAKTKISKKAKLNELRFYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLIEK 180
           GS+LKQ KVAKTK+SKK KLNELR YRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLIEK
Sbjct: 121 GSQLKQKKVAKTKLSKKDKLNELRLYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLIEK 180

Query: 181 LRKFEIPKPFVEKYDPEILTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLNMHMHWKKH 240
           LRKFEIPK  VEKYDPEILTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLNMHMHWKKH
Sbjct: 181 LRKFEIPKSVVEKYDPEILTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLNMHMHWKKH 240

Query: 241 ETVKVICKPCKPGQVHEYAEELTRLSKGIVIDIKPNNSIIFYRGKNYVQPEVMSPPNTLS 300
           ETVKVICKPCKPGQVHEYAEEL+RLSKGIVIDIKPNNSIIFYRGKNYVQPEVMSPP+TLS
Sbjct: 241 ETVKVICKPCKPGQVHEYAEELSRLSKGIVIDIKPNNSIIFYRGKNYVQPEVMSPPDTLS 300

Query: 301 KDKALEKYKYEQSLEHTSQFIEKLEKELEDFQKHLAQFKRRKEDA 345
           KDKALEKY+YEQSLEHTSQFIEKLEKELEDFQKHLAQFKRRKEDA
Sbjct: 301 KDKALEKYRYEQSLEHTSQFIEKLEKELEDFQKHLAQFKRRKEDA 344

[Close]
BLAST of CSPI07G05440 vs. NCBI nr
Match: gi|802542415|ref|XP_012081307.1| (PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Jatropha curcas])

HSP 1 Score: 413.7 bits (1062), Expect = 3.3e-112
Identity = 230/352 (65.34%), Postives = 264/352 (75.00%), Query Frame = 1 

Query: 12  FSRGSLFGFIPLIRN--VSPLSLLSIPTSFEQSSHGSWEHQASSCIVKSLNESMS----- 71
           F+ GS+ G   L  N  V   SL+ +   F+Q S+ S  H+A+S +   LN + S     
Sbjct: 3   FAIGSIRGRTNLGHNYIVKRESLVLLSFLFQQGSNLSSLHKATS-VTPLLNWTTSVNLRS 62

Query: 72  -----------RDCPPGFSFTRRYSMRESSGGFKRWQSVRHFSNAVVELKTDNNTVRFSF 131
                      R   P F  T+R ++  S    + W   R  S A  ELKTDN+ VRF+F
Sbjct: 63  YRAVIPFLEAVRVSSPNFLLTQRLNVFASHSVLRSWVYRRWMSRASFELKTDNDVVRFAF 122

Query: 132 GCPSSTNGSRLKQK--VAKTKISKKAKLNELRFYRLKAKKKKTSPNPEVRIRYSLEKAKR 191
           G     NGS  K+K    + K+S+KAKLNELRFYRLKAKKKK SPNPEVRIRY LEKAKR
Sbjct: 123 GKQPGKNGSSEKRKKTTKRVKMSRKAKLNELRFYRLKAKKKKNSPNPEVRIRYKLEKAKR 182

Query: 192 KEAWLIEKLRKFEIPKPFVEKYDPEILTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLN 251
           KE WLIEKLRKFE+PK   E YDPEILTEEEKHYLKRTGEKKKNFVL+GRRGVFGGVVLN
Sbjct: 183 KEVWLIEKLRKFEVPKIPAEVYDPEILTEEEKHYLKRTGEKKKNFVLVGRRGVFGGVVLN 242

Query: 252 MHMHWKKHETVKVICKPCKPGQVHEYAEELTRLSKGIVIDIKPNNSIIFYRGKNYVQPEV 311
           MH+HWKKHETVKVIC+PCKPGQ+HEYAEEL RLSKGIVIDIKPNNSI+FYRGKNYVQPEV
Sbjct: 243 MHLHWKKHETVKVICRPCKPGQIHEYAEELARLSKGIVIDIKPNNSIVFYRGKNYVQPEV 302

Query: 312 MSPPNTLSKDKALEKYKYEQSLEHTSQFIEKLEKELEDFQKHLAQFKRRKED 344
           MSPPNTLSK KALEKYKYEQSLEHTSQFIEKLEKELE++ +H+A++++ KED
Sbjct: 303 MSPPNTLSKQKALEKYKYEQSLEHTSQFIEKLEKELEEYLEHVARYRKLKED 353

[Close]
BLAST of CSPI07G05440 vs. NCBI nr
Match: gi|955322124|ref|XP_014631386.1| (PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic-like [Glycine max])

HSP 1 Score: 406.4 bits (1043), Expect = 5.2e-110
Identity = 220/352 (62.50%), Postives = 256/352 (72.73%), Query Frame = 1 

Query: 5   RGLSIIAFSRGSLFGFIPLIRNVSPLSLLSIPTSFEQSSHGSWEHQASSCIVKS------ 64
           RG S   F+R SLF    L+ +V  ++     TS+       W      CI +       
Sbjct: 12  RGFSC-TFNRDSLFWLCCLVEHVPTIASCPTTTSY------FWSFTPDKCIYQRTYRTPS 71

Query: 65  -LNESMSRDCPPGFSFTRRYSMRESSGGFKRWQSVRHFSNAVVELKTDNNTVRFSFGCPS 124
            L+   S     GF   +R ++  S      W   R+ SN  VELKT N+ +RFS G   
Sbjct: 72  HLSGVSSLASRSGFLLMQRSNIFGSHDILGSWLPARYISNESVELKTHNDVIRFSLGKSD 131

Query: 125 STNGSRLKQKVAKTKISKKAKLNELRFYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLI 184
             N ++  Q   K K+S+KAKLNELRFYRLKAKKK  SPNPEVRIRY LEKAKRKE WLI
Sbjct: 132 DINNAKKSQLNKKFKMSRKAKLNELRFYRLKAKKKMNSPNPEVRIRYKLEKAKRKETWLI 191

Query: 185 EKLRKFEIPKPFVEKYDPEILTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLNMHMHWK 244
           EKLRKF++PKP  E YDPEILTEEE+HYLKRTGE+KK++V +GRRGVFGGVVLNMH+HWK
Sbjct: 192 EKLRKFDVPKPPPETYDPEILTEEERHYLKRTGERKKHYVPVGRRGVFGGVVLNMHLHWK 251

Query: 245 KHETVKVICKPCKPGQVHEYAEELTRLSKGIVIDIKPNNSIIFYRGKNYVQPEVMSPPNT 304
            HETVKVICKPCKPGQVHEYAEEL RLSKGIVIDIKPNN+IIFYRGKNYV+PEVMSPPNT
Sbjct: 252 NHETVKVICKPCKPGQVHEYAEELARLSKGIVIDIKPNNTIIFYRGKNYVKPEVMSPPNT 311

Query: 305 LSKDKALEKYKYEQSLEHTSQFIEKLEKELEDFQKHLAQFKRRKEDAALESM 350
           LSK KALEKY+YEQSLEHTSQFIEKLEKELE++ +HLA+FK+ KED A + +
Sbjct: 312 LSKAKALEKYRYEQSLEHTSQFIEKLEKELEEYHQHLAKFKKGKEDTAKDGL 356

[Close]
BLAST of CSPI07G05440 vs. NCBI nr
Match: gi|947093094|gb|KRH41679.1| (hypothetical protein GLYMA_08G043700 [Glycine max])

HSP 1 Score: 402.1 bits (1032), Expect = 9.8e-109
Identity = 218/346 (63.01%), Postives = 255/346 (73.70%), Query Frame = 1 

Query: 5   RGLSIIAFSRGSLFGFIPLIRNVSPLSLLSIPTSFEQS-SHGSWEHQASSCIVKSLNESM 64
           RG S   F+R SLF    L+ +V  ++     TS+  S +     HQ +    + L+   
Sbjct: 12  RGFSC-TFNRDSLFWLCCLVEHVPTIASSPTTTSYFWSFTPDKCIHQRTYRTPRHLSRVP 71

Query: 65  SRDCPPGFSFTRRYSMRESSGGFKRWQSVRHFSNAVVELKTDNNTVRFSFGCPSSTNGSR 124
           S    PGF   +R ++         W   R+ SN  VELKTDNN VRFS       N  +
Sbjct: 72  SLSSRPGFLLMQRSNIFGIHDILGNWLPARYISNESVELKTDNNVVRFSLDKSDDINYGK 131

Query: 125 LKQKVAKTKISKKAKLNELRFYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLIEKLRKF 184
             Q   + K+S+KAKLNELRFYRLKAKKK  SPNPEVRI Y LEKAKRKE WL+EKLRKF
Sbjct: 132 KSQLNKRVKMSRKAKLNELRFYRLKAKKKMISPNPEVRITYKLEKAKRKETWLVEKLRKF 191

Query: 185 EIPKPFVEKYDPEILTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLNMHMHWKKHETVK 244
           ++PK   E +DPEILTEEE+HYLKRTGEKKK++V +GRRGVFGGVVLNMH+HWK HETVK
Sbjct: 192 DVPKSPPETFDPEILTEEERHYLKRTGEKKKHYVPVGRRGVFGGVVLNMHLHWKNHETVK 251

Query: 245 VICKPCKPGQVHEYAEELTRLSKGIVIDIKPNNSIIFYRGKNYVQPEVMSPPNTLSKDKA 304
           VICKPCKPGQVHEYAEEL RLSKGIVIDIKPNN+IIFYRGKNYVQPEVMSPPNTLSK KA
Sbjct: 252 VICKPCKPGQVHEYAEELARLSKGIVIDIKPNNTIIFYRGKNYVQPEVMSPPNTLSKVKA 311

Query: 305 LEKYKYEQSLEHTSQFIEKLEKELEDFQKHLAQFKRRKEDAALESM 350
           LEKY+YEQSLEHTSQFIE+LEKELE++ +HLA+FK+ KED A + +
Sbjct: 312 LEKYRYEQSLEHTSQFIERLEKELEEYHQHLAKFKKGKEDNAKDGL 356

The following BLAST results are available for this feature:
BLAST of CSPI07G05440 vs. Swiss-Prot
Match NameE-valueIdentityDescription
Y3544_ARATH5.7e-4043.10Uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Arabid... [more]
CFM2_ARATH1.3e-2031.86CRM-domain containing factor CFM2, chloroplastic OS=Arabidopsis thaliana GN=CFM2... [more]
CFM3_ORYSJ6.5e-2034.55CRM-domain containing factor CFM3, chloroplastic/mitochondrial OS=Oryza sativa s... [more]
CFM3_MAIZE1.5e-1936.11CRM-domain containing factor CFM3, chloroplastic/mitochondrial OS=Zea mays GN=CF... [more]
CFM3A_ARATH1.5e-1938.38CRM-domain containing factor CFM3A, chloroplastic/mitochondrial OS=Arabidopsis t... [more]
BLAST of CSPI07G05440 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K5Y2_CUCSA5.1e-19799.72Uncharacterized protein OS=Cucumis sativus GN=Csa_7G062730 PE=4 SV=1[more]
A0A067LDM8_JATCU2.3e-11265.34Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09572 PE=4 SV=1[more]
K7KRJ8_SOYBN3.6e-11062.50Uncharacterized protein OS=Glycine max GN=GLYMA_05G236500 PE=4 SV=1[more]
K7L4Y2_SOYBN6.8e-10963.01Uncharacterized protein OS=Glycine max GN=GLYMA_08G043700 PE=4 SV=1[more]
A0A0B2Q5J0_GLYSO1.2e-10863.74Putative CRM domain-containing protein, chloroplastic OS=Glycine soja GN=glysoja... [more]
BLAST of CSPI07G05440 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G13070.11.6e-10469.18 RNA-binding CRS1 / YhbY (CRM) domain protein[more]
AT2G28480.16.6e-5555.09 RNA-binding CRS1 / YhbY (CRM) domain protein[more]
AT3G25440.13.2e-4143.10 RNA-binding CRS1 / YhbY (CRM) domain protein[more]
AT3G27550.13.7e-3743.13 RNA-binding CRS1 / YhbY (CRM) domain protein[more]
AT3G18390.15.7e-2238.20 CRS1 / YhbY (CRM) domain-containing protein[more]
BLAST of CSPI07G05440 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778724321|ref|XP_011658783.1|7.3e-19799.72PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplasti... [more]
gi|659110425|ref|XP_008455218.1|1.2e-17091.88PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplasti... [more]
gi|802542415|ref|XP_012081307.1|3.3e-11265.34PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplasti... [more]
gi|955322124|ref|XP_014631386.1|5.2e-11062.50PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplasti... [more]
gi|947093094|gb|KRH41679.1|9.8e-10963.01hypothetical protein GLYMA_08G043700 [Glycine max][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001890RNA-binding_CRM
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI07G05440.1CSPI07G05440.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001890RNA-binding, CRM domainGENE3DG3DSA:3.30.110.60coord: 198..292
score: 3.9
IPR001890RNA-binding, CRM domainPFAMPF01985CRS1_YhbYcoord: 198..282
score: 1.4
IPR001890RNA-binding, CRM domainSMARTSM01103CRS1_YhbY_2coord: 198..282
score: 2.0
IPR001890RNA-binding, CRM domainPROFILEPS51295CRMcoord: 196..293
score: 19
IPR001890RNA-binding, CRM domainunknownSSF75471YhbY-likecoord: 197..292
score: 3.27
NoneNo IPR availableunknownCoilCoilcoord: 313..347
scor
NoneNo IPR availablePANTHERPTHR31426FAMILY NOT NAMEDcoord: 7..345
score: 1.7E
NoneNo IPR availablePANTHERPTHR31426:SF3SUBFAMILY NOT NAMEDcoord: 7..345
score: 1.7E