CmaCh19G002610 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh19G002610
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	RNA-binding CRS1 / YhbY (CRM) domain protein
Location	Cma_Chr19 : 1866321 .. 1870606 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTCCATAATTTGAGCGCTAGAAAGGCACAATTTCACCTTAGATCGCAAATTTGCCAGTTTAGCAGATTTTCCCTGAATCCTCAATTCCCCCAAAGCTAGCAAATTGTTGATGATGAACCAGTCCAGCCATTTTCAACTCTGGGGTTGTATTGGATTCCCCCCCTTTCATCTTATTTCTGCATTGAACGAACAATCTGCTAGGGATTGATTGATTGATTGATTTAGGACCATGTCTCGCGGTCATGCTCTATCCATTGCCATTTCAAGGTACTCTCTCCATCTCTGTAAATCTCATGGGTTTCATTCAAAAGTTATGGAATCGAATACATTTCATGCTTATCAACTTAGCCCTAGTGAAATATATTAGTTCATCTCATAACAGAGGGTCTCTGTTTGTTGAAATCTGTTGTACTCATTATTTAGCATTATAATAGGACATCATTTAAGGAAGATTTCAGGTTGTCTATGAGATTTTCCTTCGGAGATATATGGAATTGGATGATTATGGTGTGATATTTATGCAGGGATTCATTGTATGGATTCATTTCTCTGATTAGAAATGTTTCACGTCTATCTTTATTCAACATACCCACATCATTTGGGCAGTCCTCATATGAAAGTTGTGAGCATCAAATAAGTAATTGTATATCAAAGTCTCTCCAGGAATCGACGTCTATACGCTATCCGCCTGGCTTCTTTTTCACTAAGCGATATAGTATGTGTGAGAGCCTTGGTGGGTTTGAAAAATGGCAATCTGTTAGGCATTTTAGCAATGGGGCTGTGGAGCTGAAGACAGATAGCAATATTGTCAGGTTTTCTTTTGGTGGGTCTTCTAGTACTAACGGTTCCCCACGGAAACAAAAGAAGGTGGCAAAAGCCAAATTGTCTAAGAAGGCCAAATTGAATGAACTCAGACTCTATCGTCTTAAGGCGAAAAAGAAGAAGACATCTCCCAATCCAGAAGTTAGGATCAGATATTCCCTTGAAAAGGTTGGATACCATCTATAATTTATAGTTATACTAACAGCTTTTAATTGATTGCTAGTCTTCCTCTATAGAAAAGTGTGCCACAATCTTCTTGTAAGAGGAGTATTCGATTACTTACTTTGAATCTTTTTATCCATATATAATATGTTTGTTACCGGTATGAAGGTGACTGAGGTTTGATTAGCATTTCTTTGTGTAGTTGTGTGCATGTGATAAAATGCCTAATGTGAGATCCCACATTGGTTGGGGAGGAGAACGAAGCACCCTTTATAAGGATGTAGAAACCTCTCCCTAGCAGACGCGTTTTAAAAACCTTGAGGGAAAGTTCGAAAGGGAAAGCCCAAAGAGGACAATATATGCTAGCAGGGGCTTGGACCGTTACGAATGGTATCAAAGCCAGACACCGGGCGATGTGCCAGCGAGGAGGCTAAGCCTCGAAGAGGGTGGACACAAGGAGGTGTGCCAGCAAAGACGGTGGGCCCCAAAGGAGGGAGGATTGTGAGATCCCACATCGGTTGGGGAGGAGAACAAAGCACCCTTTATAAGGGTGTGGAAACCTCTCTCTAGCAGATGCGTTTTAAAAAGTTTGAGGGGAAGCCCAAAAGGGACAATATCTGCTAGCGGTAGACTTGGGTTGTTACAGCTAATAACCACTTTTTCTCTGACTTATTCTGCTTGACACGTTTGTACAACTATGAAAGTTTATTCTGTGTATCGACCATGTATGACTAATAATCCATAATATTCAGTAATTGTCGTCAAAATTTAACTTAAAGTTTCATGTAAAATCGTTTCTTTTCAATAAGAATCATTTATATTAAACAAAAATAAGTATTTCATACAAAACTTTCAAAGCAAGCGCCAAGAGAAAAACATTTTATGTGATTTTTATGCCTTCAACACAATGCTAGTGAATTTTCAAGGTTCTGTTGAATTTTGAATTAATATTTAGGACCAATTGAACTGTTCTTGGACCTCCTAGTGATCATTTGTTCTTATGAACCAATAAGTTGTTTGATCTTATAATGTCTTGAAGGATCAAATGATATATGTAGGCCAAAAGGAAAGAAGCGTGGCTGATTGAGAAGTTGAGGAAATTCGAGGTTCCAAAATCTGTTCTTGAAAATTATGATCCTGAAATTCTTACTGAAGAGGAGAAGCACTACTTGAAGCGTACAGGGGAGAAAAAGAAGAACTTTGTTCTGTTGGGGAGGCGAGGAGTCTTTGGTGGAGTTGTTCTTAATATGCATTTGCATTGGAAGAAGCATGAAACTGTCAAAGTTATTTGCAAGCCTTGCAAGCCTGGGCAGGTTCATGAATATGCTGAAGAACTTGCTCGGTTGAGTAAAGGCATTGTGATTGATATTAAACCCAACAACAGCATAGTCTTTTATCGGGGAAAGAACTATGTGCAGCCTGAAGTAATGTCGCCTCCAGATACGCTATCAAAAGACAAGGTAAGCTCAGCTCATTCCTGAAAACTGAAATGATCAAACAAAATAGATTTAATTGATTAGTGTTAGAATTACAATGGGAAATTAACCTAATCTGCAGAATTTATTTCGTAAGTAGCAGCCGCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCCCCCCCCCCCCCCCACACACACACACACACACACTCCACAGAGGTTTGATAATATTTACTCTTATGCATGTGAAATTTTTAGTTTTATATGTTTTATAGAAACTTATGCATATGAAATTTGTAGTTTTTACAATAATTACTTTGTGAATATGTTATTTGTAAGCTTATAGAACCTCATGTTATATATGGACGAGAATGAACATTCCCAGGGAGGTTTTGAGAGCTCTTGCCTCCTGCCTCTCCAATGCAGATCTGTTCACAAAATGCCAAAAGATGATCCCTCCCTGGATACCGTGCATATACTAGGTTCTCTCCCGGGCCTTGCTGATCATGAAACTAGCTGAAGGGGCCCACACGCCCAAAATACTCTCTTTTGTGCTCTCCTTCTCTTACCTTTTTCTCTTATATACATTTTGTATTGGGGTTTATGTGAGGTCCGACATCGGTTGGAGAGAAGGACGAAGCATTCCTTATAAGAGTGTGGAAACCTCTCCCTAGCAGACGCGTTTTAAAACCGTGAGGCTGACGGCGATACATAACGGTCCAAAGTGAATAATATCTGCTATCGGTGGGTTTGGGCTATTACAGTTTGTTATAAACTTTTTGAATAAAAGTATAGATTCTGCACCTCTTCTACTGTTTTATTTCATGCCCATCTTTGTATCTTGCTTTTCTGCATCTCAAGAAACGTTTGTACCTTCTTTCTACCTTCCGGCTCAAAGATCACCCAAGATACTTTGCATACCTGCTTCAAACCCAAGTTTTGGACTATGTAAAGTAGTAAGATTACCTTTCTAACGAAGTTTCTAATGGTTCGAGTTCAGTTTATTGTAACCAAGCGTTCGGCTATTTGGTTAGAAAGGAATTGGTCACTCTTTTAGAAAAGGCTCTAATAGGTTGGATTGTTCAAATTCAGTCGATGGCTTCACTAGTTCACTTTGACCTTCTATCCCAAAATTTTATGTTTTGTTCTTAGACAGTCCTTTTTTACCTCTTCTACATCATAACAGCTTTAATCAAGCAACATAACTTTTCGCATGTAAAATATTGCAGGCCTTGGAAAAATATAAGTATGAACAATCACTTGAACATACAAGTCAGTTCGTTGAAAAGTTGGAGAAAGAACTTGAAGATTTTCATAAGCATCTTGCTCAGTTCAAGAGAAAGAAGGAAGAGGCTGCTGTAGAATTCATGGTTAACTCATGA

mRNA sequence

TTTTCCATAATTTGAGCGCTAGAAAGGCACAATTTCACCTTAGATCGCAAATTTGCCAGTTTAGCAGATTTTCCCTGAATCCTCAATTCCCCCAAAGCTAGCAAATTGTTGATGATGAACCAGTCCAGCCATTTTCAACTCTGGGGTTGTATTGGATTCCCCCCCTTTCATCTTATTTCTGCATTGAACGAACAATCTGCTAGGGATTGATTGATTGATTGATTTAGGACCATGTCTCGCGGTCATGCTCTATCCATTGCCATTTCAAGGGATTCATTGTATGGATTCATTTCTCTGATTAGAAATGTTTCACGTCTATCTTTATTCAACATACCCACATCATTTGGGCAGTCCTCATATGAAAGTTGTGAGCATCAAATAAGTAATTGTATATCAAAGTCTCTCCAGGAATCGACGTCTATACGCTATCCGCCTGGCTTCTTTTTCACTAAGCGATATAGTATGTGTGAGAGCCTTGGTGGGTTTGAAAAATGGCAATCTGTTAGGCATTTTAGCAATGGGGCTGTGGAGCTGAAGACAGATAGCAATATTGTCAGGTTTTCTTTTGGTGGGTCTTCTAGTACTAACGGTTCCCCACGGAAACAAAAGAAGGTGGCAAAAGCCAAATTGTCTAAGAAGGCCAAATTGAATGAACTCAGACTCTATCGTCTTAAGGCGAAAAAGAAGAAGACATCTCCCAATCCAGAAGTTAGGATCAGATATTCCCTTGAAAAGGCCAAAAGGAAAGAAGCGTGGCTGATTGAGAAGTTGAGGAAATTCGAGGTTCCAAAATCTGTTCTTGAAAATTATGATCCTGAAATTCTTACTGAAGAGGAGAAGCACTACTTGAAGCGTACAGGGGAGAAAAAGAAGAACTTTGTTCTGTTGGGGAGGCGAGGAGTCTTTGGTGGAGTTGTTCTTAATATGCATTTGCATTGGAAGAAGCATGAAACTGTCAAAGTTATTTGCAAGCCTTGCAAGCCTGGGCAGGTTCATGAATATGCTGAAGAACTTGCTCGGTTGAGTAAAGGCATTGTGATTGATATTAAACCCAACAACAGCATAGTCTTTTATCGGGGAAAGAACTATGTGCAGCCTGAAGTAATGTCGCCTCCAGATACGCTATCAAAAGACAAGGCCTTGGAAAAATATAAGTATGAACAATCACTTGAACATACAAGTCAGTTCGTTGAAAAGTTGGAGAAAGAACTTGAAGATTTTCATAAGCATCTTGCTCAGTTCAAGAGAAAGAAGGAAGAGGCTGCTGTAGAATTCATGGTTAACTCATGA

Coding sequence (CDS)

ATGTCTCGCGGTCATGCTCTATCCATTGCCATTTCAAGGGATTCATTGTATGGATTCATTTCTCTGATTAGAAATGTTTCACGTCTATCTTTATTCAACATACCCACATCATTTGGGCAGTCCTCATATGAAAGTTGTGAGCATCAAATAAGTAATTGTATATCAAAGTCTCTCCAGGAATCGACGTCTATACGCTATCCGCCTGGCTTCTTTTTCACTAAGCGATATAGTATGTGTGAGAGCCTTGGTGGGTTTGAAAAATGGCAATCTGTTAGGCATTTTAGCAATGGGGCTGTGGAGCTGAAGACAGATAGCAATATTGTCAGGTTTTCTTTTGGTGGGTCTTCTAGTACTAACGGTTCCCCACGGAAACAAAAGAAGGTGGCAAAAGCCAAATTGTCTAAGAAGGCCAAATTGAATGAACTCAGACTCTATCGTCTTAAGGCGAAAAAGAAGAAGACATCTCCCAATCCAGAAGTTAGGATCAGATATTCCCTTGAAAAGGCCAAAAGGAAAGAAGCGTGGCTGATTGAGAAGTTGAGGAAATTCGAGGTTCCAAAATCTGTTCTTGAAAATTATGATCCTGAAATTCTTACTGAAGAGGAGAAGCACTACTTGAAGCGTACAGGGGAGAAAAAGAAGAACTTTGTTCTGTTGGGGAGGCGAGGAGTCTTTGGTGGAGTTGTTCTTAATATGCATTTGCATTGGAAGAAGCATGAAACTGTCAAAGTTATTTGCAAGCCTTGCAAGCCTGGGCAGGTTCATGAATATGCTGAAGAACTTGCTCGGTTGAGTAAAGGCATTGTGATTGATATTAAACCCAACAACAGCATAGTCTTTTATCGGGGAAAGAACTATGTGCAGCCTGAAGTAATGTCGCCTCCAGATACGCTATCAAAAGACAAGGCCTTGGAAAAATATAAGTATGAACAATCACTTGAACATACAAGTCAGTTCGTTGAAAAGTTGGAGAAAGAACTTGAAGATTTTCATAAGCATCTTGCTCAGTTCAAGAGAAAGAAGGAAGAGGCTGCTGTAGAATTCATGGTTAACTCATGA

Protein sequence

MSRGHALSIAISRDSLYGFISLIRNVSRLSLFNIPTSFGQSSYESCEHQISNCISKSLQESTSIRYPPGFFFTKRYSMCESLGGFEKWQSVRHFSNGAVELKTDSNIVRFSFGGSSSTNGSPRKQKKVAKAKLSKKAKLNELRLYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLIEKLRKFEVPKSVLENYDPEILTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLNMHLHWKKHETVKVICKPCKPGQVHEYAEELARLSKGIVIDIKPNNSIVFYRGKNYVQPEVMSPPDTLSKDKALEKYKYEQSLEHTSQFVEKLEKELEDFHKHLAQFKRKKEEAAVEFMVNS

Homology

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BLAST of CmaCh19G002610 vs. Swiss-Prot
Match: Y3544_ARATH (Uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Arabidopsis thaliana GN=At3g25440 PE=2 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 1.9e-40
Identity = 99/216 (45.83%), Postives = 140/216 (64.81%), Query Frame = 1


Query: 115 SSSTNGSPRKQKKVAKAKLSKKAKLNELRLYRLKAKKKKTSPNPEVRIRYSLEKAKRKEA 174
           SSS +G    + K  K K  K+A +  L+ +R K KK+      E +I   L KA++KE 
Sbjct: 95  SSSQDGDSCTKLKRKKLK-GKRAVVRWLKFFRWKKKKEFERMTSEEKILNKLRKARKKEE 154

Query: 175 WLIEKLRKFEVPKSVLENYDPEILTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLNMHL 234
            L+E ++K E  +S    +DPEILT EE  Y  + G K KN+V +GRRG++ GV+LNMHL
Sbjct: 155 RLMETMKKLEPSESAETTHDPEILTPEEHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHL 214

Query: 235 HWKKHETVKVICKPCKPGQVHEYAEELARLSKGIVIDIKPNNSIVFYRGKNYVQP--EVM 294
           HWKKH+T++V+ K   P +V E A ELARL+ GIV+D+   N+I+ YRGKNYVQP  E+M
Sbjct: 215 HWKKHQTLQVVIKTFTPDEVKEIAVELARLTGGIVLDVHEGNTIIMYRGKNYVQPPTEIM 274

Query: 295 SPPDTLSKDKALEKYKYEQSLEHTSQFVEKLEKELE 329
           SP  TL + KAL+K K   +L    +++ +LE+EL+
Sbjct: 275 SPRITLPRKKALDKSKCRDALRAVRKYIPRLEQELQ 309

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BLAST of CmaCh19G002610 vs. Swiss-Prot
Match: CFM2_ARATH (CRM-domain containing factor CFM2, chloroplastic OS=Arabidopsis thaliana GN=CFM2 PE=1 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 3.8e-20
Identity = 74/235 (31.49%), Postives = 124/235 (52.77%), Query Frame = 1


Query: 111 SFGGSSSTNGSPRKQKKVAKAKLSKKAK--LNELRLYRLKAKKKKTSP----NPEVRIRY 170
           S  G+  T      + +  K  +  +AK   + ++ +++K++++ +         +++  
Sbjct: 489 SVHGNKLTENEEEIKPRAVKEDIELEAKDQKDHIQTHQMKSRQRNSPEAILEKTSMKLSM 548

Query: 171 SLEKAKRKEAWLIEKLRKFEVPKSVLENYDPEILTEEEKHYLKRTGEKKKNFVLLGRRGV 230
           +LEK    E  L + L   E P+  L + D E +T +EK+ L++ G K K F+LLGRRGV
Sbjct: 549 ALEKKANAEKVLAD-LENRESPQ--LSDIDKEGITNDEKYMLRKIGLKMKPFLLLGRRGV 608

Query: 231 FGGVVLNMHLHWKKHETVKVICKPCKPGQVHEYAEELARLSKGIVIDIK---PNNSIVFY 290
           F G + NMHLHWK  E VK+IC        H+ AE L   S GI++ ++      +I+ Y
Sbjct: 609 FDGTIENMHLHWKYRELVKIICNEYSIEAAHKVAEILEAESGGILVAVEMVSKGYAIIVY 668

Query: 291 RGKNYVQPEVMSPPDTLSKDKALEKYKYEQSLEHTSQFVEKLEKELEDFHKHLAQ 337
           RGKNY +P+ + P   LSK +AL++    Q  +     V KL   +E+ ++ L +
Sbjct: 669 RGKNYERPQCLRPQTLLSKREALKRSVEAQRRKSLKLHVLKLSNNIEELNRQLVE 720

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BLAST of CmaCh19G002610 vs. Swiss-Prot
Match: CFM3_ORYSJ (CRM-domain containing factor CFM3, chloroplastic/mitochondrial OS=Oryza sativa subsp. japonica GN=CFM3 PE=3 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 6.5e-20
Identity = 67/191 (35.08%), Postives = 99/191 (51.83%), Query Frame = 1


Query: 161 RIRYSLEKAKRKEAWLIEKLRKFEVPKSVLENYDP-EILTEEEKHYLKRTGEKKKNFVLL 220
           ++ + L+ A++K       L K E      E   P E +T+EE+   ++ G + K F+LL
Sbjct: 554 KLEWKLQLAQKKIEKAERVLGKVETALKPTEGIQPPETITDEERFMFRKLGLRMKAFLLL 613

Query: 221 GRRGVFGGVVLNMHLHWKKHETVKVICKPCKPGQVHEYAEELARLSKGIVID---IKPNN 280
           GRRGVF G + NMHLHWK  E VK++ K    G V + A  L   S GI++    +    
Sbjct: 614 GRRGVFDGTIENMHLHWKYRELVKILVKAKSFGDVKKIALSLEAESGGILVSVDKVSKGY 673

Query: 281 SIVFYRGKNYVQPEVMSPPDTLSKDKALEKYKYEQSLEHTSQFVEKLEKELEDFHKHLAQ 340
           +IV +RGK+Y +P  + P + LSK KAL +    Q  E  S  +  L + ++     L Q
Sbjct: 674 AIVVFRGKDYARPSKLRPRNLLSKRKALARSIEIQRREALSHHIATLNRRVKKLKAELLQ 733

Query: 341 FKRKKEEAAVE 348
            +  KEE  VE
Sbjct: 734 MEGVKEEGDVE 744

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BLAST of CmaCh19G002610 vs. Swiss-Prot
Match: CFM3_MAIZE (CRM-domain containing factor CFM3, chloroplastic/mitochondrial OS=Zea mays GN=CFM3 PE=1 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.2e-18
Identity = 66/185 (35.68%), Postives = 97/185 (52.43%), Query Frame = 1


Query: 166 LEKAKRKEAWLIEKLRKFEVPKSVLENYDPEILTEEEKHYLKRTGEKKKNFVLLGRRGVF 225
           +EKA+R    +   LR  E      ++  PE +T+EE+   ++ G + K F+LLGRRGVF
Sbjct: 558 MEKAERVLGKVETALRPTE------DSRPPETITDEERFMFRKLGLRMKAFLLLGRRGVF 617

Query: 226 GGVVLNMHLHWKKHETVKVICKPCKPGQVHEYAEELARLSKGIVID---IKPNNSIVFYR 285
            G + NMHLHWK  E VK++ K      V   A  L   S GI++    +    +IV +R
Sbjct: 618 DGTIENMHLHWKYRELVKILVKAKSFADVKRIALSLEAESGGILVSVDKVSKGYAIVVFR 677

Query: 286 GKNYVQPEVMSPPDTLSKDKALEKYKYEQSLEHTSQFVEKLEKELEDFHKHLAQFKRKKE 345
           GKNY +P  + P + LSK KAL +    Q  +  S+   KL +++E     L Q +  KE
Sbjct: 678 GKNYRRPSSLRPRNLLSKRKALARSIELQRHQALSRHFAKLNRKVERLKAELVQMEDVKE 736

Query: 346 EAAVE 348
           +   E
Sbjct: 738 QGDEE 736

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BLAST of CmaCh19G002610 vs. Swiss-Prot
Match: CFM3A_ARATH (CRM-domain containing factor CFM3A, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=CFM3A PE=2 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 3.6e-18
Identity = 69/185 (37.30%), Postives = 97/185 (52.43%), Query Frame = 1


Query: 166 LEKAKRKEAWLIEKLRKFE--------VPKSVLENYDPEILTEEEKHYLKRTGEKKKNFV 225
           + K +RK A+   KL K E          K   +  DPE +T+EE+   ++ G K K F+
Sbjct: 598 VRKLERKLAFAERKLLKAERGLAKVEVCLKPAEQREDPESITDEERFMFRKLGLKMKAFL 657

Query: 226 LLGRRGVFGGVVLNMHLHWKKHETVKVICKPCKPGQVHEYAEELARLSKGIVIDI---KP 285
           LLGRRGVF G V NMHLHWK  E VK+I K      V + A  L   S GI++ I     
Sbjct: 658 LLGRRGVFDGTVENMHLHWKYRELVKIIVKAKTFDGVKKVALALEAESGGILVSIDKVTK 717

Query: 286 NNSIVFYRGKNYVQPEVMSPPDTLSKDKAL----EKYKYEQSLEHTSQF---VEKLEKEL 333
             +I+ YRG++Y +P ++ P + L+K KAL    E  + E  L+H S      ++L  E+
Sbjct: 718 GYAIIVYRGQDYKRPTMLRPKNLLTKRKALARSIELQRREGLLKHISTMQAKAKQLRAEI 777

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BLAST of CmaCh19G002610 vs. TrEMBL
Match: A0A0A0K5Y2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G062730 PE=4 SV=1)

HSP 1 Score: 562.0 bits (1447), Expect = 5.1e-157
Identity = 296/353 (83.85%), Postives = 314/353 (88.95%), Query Frame = 1


Query: 1   MSRGHALSI-AISRDSLYGFISLIRNVSRLSLFNIPTSFGQSSYESCEHQISNCISKSLQ 60
           M R   LSI A SR SL+GFI LIRNVS LSL +IPTSF QSS+ S EHQ S+CI KSL 
Sbjct: 1   MPRCRGLSIIAFSRGSLFGFIPLIRNVSPLSLLSIPTSFEQSSHGSWEHQASSCIVKSLN 60

Query: 61  ESTSIRYPPGFFFTKRYSMCESLGGFEKWQSVRHFSNGAVELKTDSNIVRFSFGGSSSTN 120
           ES S   PPGF FT+RYSM ES GGF++WQSVRHFSN  VELKTD+N VRFSFG  SSTN
Sbjct: 61  ESMSRDCPPGFSFTRRYSMRESSGGFKRWQSVRHFSNAVVELKTDNNTVRFSFGCPSSTN 120

Query: 121 GSPRKQKKVAKAKLSKKAKLNELRLYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLIEK 180
           GS  KQK VAK K+SKKAKLNELR YRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLIEK
Sbjct: 121 GSRLKQK-VAKTKMSKKAKLNELRFYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLIEK 180

Query: 181 LRKFEVPKSVLENYDPEILTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLNMHLHWKKH 240
           LRKFE+PK  +E YDPEILTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLNMH+HWKKH
Sbjct: 181 LRKFEIPKPFVEKYDPEILTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLNMHMHWKKH 240

Query: 241 ETVKVICKPCKPGQVHEYAEELARLSKGIVIDIKPNNSIVFYRGKNYVQPEVMSPPDTLS 300
           ETVKVICKPCKPGQVHEYAEEL RLSKGIVIDIKPNNSI+FYRGKNYVQPEVMSPP+TLS
Sbjct: 241 ETVKVICKPCKPGQVHEYAEELTRLSKGIVIDIKPNNSIIFYRGKNYVQPEVMSPPNTLS 300

Query: 301 KDKALEKYKYEQSLEHTSQFVEKLEKELEDFHKHLAQFKRKKEEAAVEFMVNS 353
           KDKALEKYKYEQSLEHTSQF+EKLEKELEDF KHLAQFKR+KE+AA+E MVNS
Sbjct: 301 KDKALEKYKYEQSLEHTSQFIEKLEKELEDFQKHLAQFKRRKEDAALESMVNS 352

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BLAST of CmaCh19G002610 vs. TrEMBL
Match: A0A067LDM8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09572 PE=4 SV=1)

HSP 1 Score: 410.6 bits (1054), Expect = 1.9e-111
Identity = 210/277 (75.81%), Postives = 235/277 (84.84%), Query Frame = 1


Query: 68  PGFFFTKRYSMCESLGGFEKWQSVRHFSNGAVELKTDSNIVRFSFGGSSSTNGSPRKQKK 127
           P F  T+R ++  S      W   R  S  + ELKTD+++VRF+FG     NGS  K+KK
Sbjct: 77  PNFLLTQRLNVFASHSVLRSWVYRRWMSRASFELKTDNDVVRFAFGKQPGKNGSSEKRKK 136

Query: 128 VAK-AKLSKKAKLNELRLYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLIEKLRKFEVP 187
             K  K+S+KAKLNELR YRLKAKKKK SPNPEVRIRY LEKAKRKE WLIEKLRKFEVP
Sbjct: 137 TTKRVKMSRKAKLNELRFYRLKAKKKKNSPNPEVRIRYKLEKAKRKEVWLIEKLRKFEVP 196

Query: 188 KSVLENYDPEILTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLNMHLHWKKHETVKVIC 247
           K   E YDPEILTEEEKHYLKRTGEKKKNFVL+GRRGVFGGVVLNMHLHWKKHETVKVIC
Sbjct: 197 KIPAEVYDPEILTEEEKHYLKRTGEKKKNFVLVGRRGVFGGVVLNMHLHWKKHETVKVIC 256

Query: 248 KPCKPGQVHEYAEELARLSKGIVIDIKPNNSIVFYRGKNYVQPEVMSPPDTLSKDKALEK 307
           +PCKPGQ+HEYAEELARLSKGIVIDIKPNNSIVFYRGKNYVQPEVMSPP+TLSK KALEK
Sbjct: 257 RPCKPGQIHEYAEELARLSKGIVIDIKPNNSIVFYRGKNYVQPEVMSPPNTLSKQKALEK 316

Query: 308 YKYEQSLEHTSQFVEKLEKELEDFHKHLAQFKRKKEE 344
           YKYEQSLEHTSQF+EKLEKELE++ +H+A++++ KE+
Sbjct: 317 YKYEQSLEHTSQFIEKLEKELEEYLEHVARYRKLKED 353

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BLAST of CmaCh19G002610 vs. TrEMBL
Match: K7L4Y2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_08G043700 PE=4 SV=1)

HSP 1 Score: 406.0 bits (1042), Expect = 4.7e-110
Identity = 216/339 (63.72%), Postives = 258/339 (76.11%), Query Frame = 1


Query: 8   SIAISRDSLYGFISLIRNVSRLSLFNIPTSFGQS-SYESCEHQISNCISKSLQESTSIRY 67
           S   +RDSL+    L+ +V  ++     TS+  S + + C HQ +    + L    S+  
Sbjct: 15  SCTFNRDSLFWLCCLVEHVPTIASSPTTTSYFWSFTPDKCIHQRTYRTPRHLSRVPSLSS 74

Query: 68  PPGFFFTKRYSMCESLGGFEKWQSVRHFSNGAVELKTDSNIVRFSFGGSSSTNGSPRKQK 127
            PGF   +R ++         W   R+ SN +VELKTD+N+VRFS   S   N   + Q 
Sbjct: 75  RPGFLLMQRSNIFGIHDILGNWLPARYISNESVELKTDNNVVRFSLDKSDDINYGKKSQL 134

Query: 128 KVAKAKLSKKAKLNELRLYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLIEKLRKFEVP 187
              + K+S+KAKLNELR YRLKAKKK  SPNPEVRI Y LEKAKRKE WL+EKLRKF+VP
Sbjct: 135 N-KRVKMSRKAKLNELRFYRLKAKKKMISPNPEVRITYKLEKAKRKETWLVEKLRKFDVP 194

Query: 188 KSVLENYDPEILTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLNMHLHWKKHETVKVIC 247
           KS  E +DPEILTEEE+HYLKRTGEKKK++V +GRRGVFGGVVLNMHLHWK HETVKVIC
Sbjct: 195 KSPPETFDPEILTEEERHYLKRTGEKKKHYVPVGRRGVFGGVVLNMHLHWKNHETVKVIC 254

Query: 248 KPCKPGQVHEYAEELARLSKGIVIDIKPNNSIVFYRGKNYVQPEVMSPPDTLSKDKALEK 307
           KPCKPGQVHEYAEELARLSKGIVIDIKPNN+I+FYRGKNYVQPEVMSPP+TLSK KALEK
Sbjct: 255 KPCKPGQVHEYAEELARLSKGIVIDIKPNNTIIFYRGKNYVQPEVMSPPNTLSKVKALEK 314

Query: 308 YKYEQSLEHTSQFVEKLEKELEDFHKHLAQFKRKKEEAA 346
           Y+YEQSLEHTSQF+E+LEKELE++H+HLA+FK+ KE+ A
Sbjct: 315 YRYEQSLEHTSQFIERLEKELEEYHQHLAKFKKGKEDNA 352

[Close]

BLAST of CmaCh19G002610 vs. TrEMBL
Match: K7L4Y3_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_08G043700 PE=4 SV=1)

HSP 1 Score: 406.0 bits (1042), Expect = 4.7e-110
Identity = 216/339 (63.72%), Postives = 258/339 (76.11%), Query Frame = 1


Query: 8   SIAISRDSLYGFISLIRNVSRLSLFNIPTSFGQS-SYESCEHQISNCISKSLQESTSIRY 67
           S   +RDSL+    L+ +V  ++     TS+  S + + C HQ +    + L    S+  
Sbjct: 15  SCTFNRDSLFWLCCLVEHVPTIASSPTTTSYFWSFTPDKCIHQRTYRTPRHLSRVPSLSS 74

Query: 68  PPGFFFTKRYSMCESLGGFEKWQSVRHFSNGAVELKTDSNIVRFSFGGSSSTNGSPRKQK 127
            PGF   +R ++         W   R+ SN +VELKTD+N+VRFS   S   N   + Q 
Sbjct: 75  RPGFLLMQRSNIFGIHDILGNWLPARYISNESVELKTDNNVVRFSLDKSDDINYGKKSQL 134

Query: 128 KVAKAKLSKKAKLNELRLYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLIEKLRKFEVP 187
              + K+S+KAKLNELR YRLKAKKK  SPNPEVRI Y LEKAKRKE WL+EKLRKF+VP
Sbjct: 135 N-KRVKMSRKAKLNELRFYRLKAKKKMISPNPEVRITYKLEKAKRKETWLVEKLRKFDVP 194

Query: 188 KSVLENYDPEILTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLNMHLHWKKHETVKVIC 247
           KS  E +DPEILTEEE+HYLKRTGEKKK++V +GRRGVFGGVVLNMHLHWK HETVKVIC
Sbjct: 195 KSPPETFDPEILTEEERHYLKRTGEKKKHYVPVGRRGVFGGVVLNMHLHWKNHETVKVIC 254

Query: 248 KPCKPGQVHEYAEELARLSKGIVIDIKPNNSIVFYRGKNYVQPEVMSPPDTLSKDKALEK 307
           KPCKPGQVHEYAEELARLSKGIVIDIKPNN+I+FYRGKNYVQPEVMSPP+TLSK KALEK
Sbjct: 255 KPCKPGQVHEYAEELARLSKGIVIDIKPNNTIIFYRGKNYVQPEVMSPPNTLSKVKALEK 314

Query: 308 YKYEQSLEHTSQFVEKLEKELEDFHKHLAQFKRKKEEAA 346
           Y+YEQSLEHTSQF+E+LEKELE++H+HLA+FK+ KE+ A
Sbjct: 315 YRYEQSLEHTSQFIERLEKELEEYHQHLAKFKKGKEDNA 352

[Close]

BLAST of CmaCh19G002610 vs. TrEMBL
Match: A0A0B2Q5J0_GLYSO (Putative CRM domain-containing protein, chloroplastic OS=Glycine soja GN=glysoja_002652 PE=4 SV=1)

HSP 1 Score: 406.0 bits (1042), Expect = 4.7e-110
Identity = 216/339 (63.72%), Postives = 258/339 (76.11%), Query Frame = 1


Query: 8   SIAISRDSLYGFISLIRNVSRLSLFNIPTSFGQS-SYESCEHQISNCISKSLQESTSIRY 67
           S   +RDSL+    L+ +V  ++     TS+  S + + C HQ +    + L    S+  
Sbjct: 15  SCTFNRDSLFWLCCLVEHVPTIASSPTTTSYFWSFTPDKCIHQRTYRTPRHLSRVPSLSS 74

Query: 68  PPGFFFTKRYSMCESLGGFEKWQSVRHFSNGAVELKTDSNIVRFSFGGSSSTNGSPRKQK 127
            PGF   +R ++         W   R+ SN +VELKTD+N+VRFS   S   N   + Q 
Sbjct: 75  RPGFLLMQRSNIFGIHDILGNWLPARYISNESVELKTDNNVVRFSLDKSDDINYGKKSQL 134

Query: 128 KVAKAKLSKKAKLNELRLYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLIEKLRKFEVP 187
              + K+S+KAKLNELR YRLKAKKK  SPNPEVRI Y LEKAKRKE WL+EKLRKF+VP
Sbjct: 135 N-KRVKMSRKAKLNELRFYRLKAKKKMISPNPEVRITYKLEKAKRKETWLVEKLRKFDVP 194

Query: 188 KSVLENYDPEILTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLNMHLHWKKHETVKVIC 247
           KS  E +DPEILTEEE+HYLKRTGEKKK++V +GRRGVFGGVVLNMHLHWK HETVKVIC
Sbjct: 195 KSPPETFDPEILTEEERHYLKRTGEKKKHYVPVGRRGVFGGVVLNMHLHWKNHETVKVIC 254

Query: 248 KPCKPGQVHEYAEELARLSKGIVIDIKPNNSIVFYRGKNYVQPEVMSPPDTLSKDKALEK 307
           KPCKPGQVHEYAEELARLSKGIVIDIKPNN+I+FYRGKNYVQPEVMSPP+TLSK KALEK
Sbjct: 255 KPCKPGQVHEYAEELARLSKGIVIDIKPNNTIIFYRGKNYVQPEVMSPPNTLSKVKALEK 314

Query: 308 YKYEQSLEHTSQFVEKLEKELEDFHKHLAQFKRKKEEAA 346
           Y+YEQSLEHTSQF+E+LEKELE++H+HLA+FK+ KE+ A
Sbjct: 315 YRYEQSLEHTSQFIERLEKELEEYHQHLAKFKKGKEDNA 352

[Close]

BLAST of CmaCh19G002610 vs. TAIR10
Match: AT4G13070.1 (AT4G13070.1 RNA-binding CRS1 / YhbY (CRM) domain protein)

HSP 1 Score: 390.2 bits (1001), Expect = 1.4e-108
Identity = 214/343 (62.39%), Postives = 259/343 (75.51%), Query Frame = 1


Query: 7   LSIAISRDSLYGFISLIRNVSRLSLFNIPTSFGQSSYESCEHQISNCISKSLQESTSIRY 66
           L++  +++    F+   +  SR  L +  +S   S  +S       C S S   S + R+
Sbjct: 2   LALGYAKEIAQRFLRNPKWTSRFFLLHYQSSNYSSYVKSRPFLQVQCKSASFDVSQAQRW 61

Query: 67  PPGFFFTKRYSMCESLGGFEKWQSVRHFSNGAVELKTDSNIVRFSFGGSSSTNGS---PR 126
                         +L  ++   S R+ SN  +EL+TD N+VRF+F   SS+  +    R
Sbjct: 62  --------------NLFAYDGLFSRRYLSNSTIELRTDDNVVRFAFNNVSSSGNNVVPTR 121

Query: 127 KQKKVAKAKLSKKAKLNELRLYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLIEKLRKF 186
           K+KK  +AKLS+KAK+NELR YRLKAKKK  SPNPEVRIRY LEKAKRKE WLIEKLRK+
Sbjct: 122 KEKKWKRAKLSRKAKVNELRFYRLKAKKKMNSPNPEVRIRYKLEKAKRKEEWLIEKLRKY 181

Query: 187 EVPKSVLENYDPEILTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLNMHLHWKKHETVK 246
           +VPKS  E YDPE LTEEE+HYLKRTGEK+KNFVL+GRRGVFGGVVLN+HLHWKKHETVK
Sbjct: 182 DVPKSPAEPYDPESLTEEEQHYLKRTGEKRKNFVLVGRRGVFGGVVLNLHLHWKKHETVK 241

Query: 247 VICKPC-KPGQVHEYAEELARLSKGIVIDIKPNNSIVFYRGKNYVQPEVMSPPDTLSKDK 306
           VICKPC KPGQVHEYAEELARLSKGIVID+KPNN+IV YRGKNYV+PEVMSP DTLSKDK
Sbjct: 242 VICKPCNKPGQVHEYAEELARLSKGIVIDVKPNNTIVLYRGKNYVRPEVMSPVDTLSKDK 301

Query: 307 ALEKYKYEQSLEHTSQFVEKLEKELEDFHKHLAQFKRKKEEAA 346
           ALEKY+YEQSLEHTS+F+EKLEKELE++HK++A+ K+KK+E A
Sbjct: 302 ALEKYRYEQSLEHTSEFIEKLEKELEEYHKYVARHKKKKDEEA 330

[Close]

BLAST of CmaCh19G002610 vs. TAIR10
Match: AT2G28480.1 (AT2G28480.1 RNA-binding CRS1 / YhbY (CRM) domain protein)

HSP 1 Score: 216.5 bits (550), Expect = 2.7e-56
Identity = 123/225 (54.67%), Postives = 156/225 (69.33%), Query Frame = 1


Query: 122 PRKQKKVAKAKLSKKAK--------LNELRLYRLKAK-KKKTSPNPEVRIRYSLEKAKRK 181
           P+K K + K +L  K K         N     RL  K KKK   N E RI+Y LEKAK K
Sbjct: 79  PKKYKWLTKKRLKLKRKKEREERNAANRKDPRRLTVKGKKKKFVNAEERIKYKLEKAKIK 138

Query: 182 EAWLIEKLRKFEVPKSVLENYDPEILTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLNM 241
           EA LIE+L+++EV K       P  +T EE+ YLK+ G+K+ N+V +GRRGVFGGV+LNM
Sbjct: 139 EALLIERLKRYEVAKVQGPEVRPHEITGEERFYLKKMGQKRSNYVPIGRRGVFGGVILNM 198

Query: 242 HLHWKKHETVKVICKPCKPGQVHEYAEELARLSKGIVIDIKPNNSIVFYRGKNYVQPEVM 301
           HLHWKKHETVKVIC   KPGQV +YAEELA+LS G+ ++I  +++I+FYRGK YVQP+VM
Sbjct: 199 HLHWKKHETVKVICNNSKPGQVQQYAEELAKLSGGVPVNIIGDDTIIFYRGKGYVQPQVM 258

Query: 302 SPPDTLSKDKALEKYKYEQSLEHTSQFVEKLEKELEDFHKHLAQF 338
           SP DTLSK +A EK KYEQSLE    F+   EKELE +++H+A +
Sbjct: 259 SPIDTLSKKRAYEKSKYEQSLESVRHFIAIAEKELELYYRHVALY 303

[Close]

BLAST of CmaCh19G002610 vs. TAIR10
Match: AT3G25440.1 (AT3G25440.1 RNA-binding CRS1 / YhbY (CRM) domain protein)

HSP 1 Score: 167.9 bits (424), Expect = 1.1e-41
Identity = 99/216 (45.83%), Postives = 140/216 (64.81%), Query Frame = 1


Query: 115 SSSTNGSPRKQKKVAKAKLSKKAKLNELRLYRLKAKKKKTSPNPEVRIRYSLEKAKRKEA 174
           SSS +G    + K  K K  K+A +  L+ +R K KK+      E +I   L KA++KE 
Sbjct: 95  SSSQDGDSCTKLKRKKLK-GKRAVVRWLKFFRWKKKKEFERMTSEEKILNKLRKARKKEE 154

Query: 175 WLIEKLRKFEVPKSVLENYDPEILTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLNMHL 234
            L+E ++K E  +S    +DPEILT EE  Y  + G K KN+V +GRRG++ GV+LNMHL
Sbjct: 155 RLMETMKKLEPSESAETTHDPEILTPEEHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHL 214

Query: 235 HWKKHETVKVICKPCKPGQVHEYAEELARLSKGIVIDIKPNNSIVFYRGKNYVQP--EVM 294
           HWKKH+T++V+ K   P +V E A ELARL+ GIV+D+   N+I+ YRGKNYVQP  E+M
Sbjct: 215 HWKKHQTLQVVIKTFTPDEVKEIAVELARLTGGIVLDVHEGNTIIMYRGKNYVQPPTEIM 274

Query: 295 SPPDTLSKDKALEKYKYEQSLEHTSQFVEKLEKELE 329
           SP  TL + KAL+K K   +L    +++ +LE+EL+
Sbjct: 275 SPRITLPRKKALDKSKCRDALRAVRKYIPRLEQELQ 309

[Close]

BLAST of CmaCh19G002610 vs. TAIR10
Match: AT3G27550.1 (AT3G27550.1 RNA-binding CRS1 / YhbY (CRM) domain protein)

HSP 1 Score: 150.2 bits (378), Expect = 2.4e-36
Identity = 89/214 (41.59%), Postives = 137/214 (64.02%), Query Frame = 1


Query: 114 GSSSTNGSPRKQKKVAKAKLSKKAKLNELRLYRLKAKKKKTSPNPEVRIRYSLEKAKRKE 173
           G S++ G   + K  ++ +      L E+R  R K  KKK   + E R+ Y+L++AK+K 
Sbjct: 11  GMSTSRGRSMRSKVESRMRKESGKTLREIR--RAKKLKKKLMTDEE-RLIYNLKRAKKKV 70

Query: 174 AWLIEKLRKFEVPKSVLENYDPEILTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLNMH 233
           A L++KL+K+++P+     +DPE+ T E+    K+ G K KN+V +G RGVFGGVV NMH
Sbjct: 71  ALLLQKLKKYDLPELPSPVHDPELFTSEQVQAFKKIGFKNKNYVPVGVRGVFGGVVQNMH 130

Query: 234 LHWKKHETVKVICKPCKPGQVHEYAEELARLSKGIVIDIKPNNSIVFYRGKNYVQPEVMS 293
           +HWK HETV+V C      ++ E A  +ARLS G+VI+I    +I+ +RG+NY QP+ + 
Sbjct: 131 MHWKFHETVQVCCDNFPKEKIKEMASMIARLSGGVVINIHNVKTIIMFRGRNYRQPKNLI 190

Query: 294 PPDTLSKDKALEKYKYEQSLEHTSQFVEKLEKEL 328
           P +TL+K KAL K ++EQ+LE     ++K E++L
Sbjct: 191 PVNTLTKRKALFKARFEQALESQKLNIKKTEQQL 221

[Close]

BLAST of CmaCh19G002610 vs. TAIR10
Match: AT3G01370.1 (AT3G01370.1 CRM family member 2)

HSP 1 Score: 100.5 bits (249), Expect = 2.1e-21
Identity = 74/235 (31.49%), Postives = 124/235 (52.77%), Query Frame = 1


Query: 111 SFGGSSSTNGSPRKQKKVAKAKLSKKAK--LNELRLYRLKAKKKKTSP----NPEVRIRY 170
           S  G+  T      + +  K  +  +AK   + ++ +++K++++ +         +++  
Sbjct: 489 SVHGNKLTENEEEIKPRAVKEDIELEAKDQKDHIQTHQMKSRQRNSPEAILEKTSMKLSM 548

Query: 171 SLEKAKRKEAWLIEKLRKFEVPKSVLENYDPEILTEEEKHYLKRTGEKKKNFVLLGRRGV 230
           +LEK    E  L + L   E P+  L + D E +T +EK+ L++ G K K F+LLGRRGV
Sbjct: 549 ALEKKANAEKVLAD-LENRESPQ--LSDIDKEGITNDEKYMLRKIGLKMKPFLLLGRRGV 608

Query: 231 FGGVVLNMHLHWKKHETVKVICKPCKPGQVHEYAEELARLSKGIVIDIK---PNNSIVFY 290
           F G + NMHLHWK  E VK+IC        H+ AE L   S GI++ ++      +I+ Y
Sbjct: 609 FDGTIENMHLHWKYRELVKIICNEYSIEAAHKVAEILEAESGGILVAVEMVSKGYAIIVY 668

Query: 291 RGKNYVQPEVMSPPDTLSKDKALEKYKYEQSLEHTSQFVEKLEKELEDFHKHLAQ 337
           RGKNY +P+ + P   LSK +AL++    Q  +     V KL   +E+ ++ L +
Sbjct: 669 RGKNYERPQCLRPQTLLSKREALKRSVEAQRRKSLKLHVLKLSNNIEELNRQLVE 720

[Close]

BLAST of CmaCh19G002610 vs. NCBI nr
Match: gi|778724321|ref|XP_011658783.1| (PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Cucumis sativus])

HSP 1 Score: 562.0 bits (1447), Expect = 7.4e-157
Identity = 296/353 (83.85%), Postives = 314/353 (88.95%), Query Frame = 1


Query: 1   MSRGHALSI-AISRDSLYGFISLIRNVSRLSLFNIPTSFGQSSYESCEHQISNCISKSLQ 60
           M R   LSI A SR SL+GFI LIRNVS LSL +IPTSF QSS+ S EHQ S+CI KSL 
Sbjct: 1   MPRCRGLSIIAFSRGSLFGFIPLIRNVSPLSLLSIPTSFEQSSHGSWEHQASSCIVKSLN 60

Query: 61  ESTSIRYPPGFFFTKRYSMCESLGGFEKWQSVRHFSNGAVELKTDSNIVRFSFGGSSSTN 120
           ES S   PPGF FT+RYSM ES GGF++WQSVRHFSN  VELKTD+N VRFSFG  SSTN
Sbjct: 61  ESMSRDCPPGFSFTRRYSMRESSGGFKRWQSVRHFSNAVVELKTDNNTVRFSFGCPSSTN 120

Query: 121 GSPRKQKKVAKAKLSKKAKLNELRLYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLIEK 180
           GS  KQK VAK K+SKKAKLNELR YRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLIEK
Sbjct: 121 GSRLKQK-VAKTKMSKKAKLNELRFYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLIEK 180

Query: 181 LRKFEVPKSVLENYDPEILTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLNMHLHWKKH 240
           LRKFE+PK  +E YDPEILTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLNMH+HWKKH
Sbjct: 181 LRKFEIPKPFVEKYDPEILTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLNMHMHWKKH 240

Query: 241 ETVKVICKPCKPGQVHEYAEELARLSKGIVIDIKPNNSIVFYRGKNYVQPEVMSPPDTLS 300
           ETVKVICKPCKPGQVHEYAEEL RLSKGIVIDIKPNNSI+FYRGKNYVQPEVMSPP+TLS
Sbjct: 241 ETVKVICKPCKPGQVHEYAEELTRLSKGIVIDIKPNNSIIFYRGKNYVQPEVMSPPNTLS 300

Query: 301 KDKALEKYKYEQSLEHTSQFVEKLEKELEDFHKHLAQFKRKKEEAAVEFMVNS 353
           KDKALEKYKYEQSLEHTSQF+EKLEKELEDF KHLAQFKR+KE+AA+E MVNS
Sbjct: 301 KDKALEKYKYEQSLEHTSQFIEKLEKELEDFQKHLAQFKRRKEDAALESMVNS 352

[Close]

BLAST of CmaCh19G002610 vs. NCBI nr
Match: gi|659110425|ref|XP_008455218.1| (PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Cucumis melo])

HSP 1 Score: 557.4 bits (1435), Expect = 1.8e-155
Identity = 291/342 (85.09%), Postives = 309/342 (90.35%), Query Frame = 1


Query: 3   RGHALSIAISRDSLYGFISLIRNVSRLSLFNIPTSFGQSSYESCEHQISNCISKSLQEST 62
           RG ++ I ISR SL+GF SLIRN S LSL ++PTSFGQSS+ SCEHQ S+ I KSL EST
Sbjct: 5   RGQSI-ITISRGSLFGFTSLIRNASPLSLLSVPTSFGQSSHGSCEHQASSRIVKSLNEST 64

Query: 63  SIRYPPGFFFTKRYSMCESLGGFEKWQSVRHFSNGAVELKTDSNIVRFSFGGSSSTNGSP 122
           S   PPG   T RYSM ES GGF++WQSVRHFSN  VELKTDSN VRFSFG  SSTNGS 
Sbjct: 65  SRDCPPGSSLTWRYSMWESYGGFKRWQSVRHFSNAVVELKTDSNTVRFSFG-PSSTNGSQ 124

Query: 123 RKQKKVAKAKLSKKAKLNELRLYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLIEKLRK 182
            KQKKVAK KLSKK KLNELRLYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLIEKLRK
Sbjct: 125 LKQKKVAKTKLSKKDKLNELRLYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLIEKLRK 184

Query: 183 FEVPKSVLENYDPEILTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLNMHLHWKKHETV 242
           FE+PKSV+E YDPEILTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLNMH+HWKKHETV
Sbjct: 185 FEIPKSVVEKYDPEILTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLNMHMHWKKHETV 244

Query: 243 KVICKPCKPGQVHEYAEELARLSKGIVIDIKPNNSIVFYRGKNYVQPEVMSPPDTLSKDK 302
           KVICKPCKPGQVHEYAEEL+RLSKGIVIDIKPNNSI+FYRGKNYVQPEVMSPPDTLSKDK
Sbjct: 245 KVICKPCKPGQVHEYAEELSRLSKGIVIDIKPNNSIIFYRGKNYVQPEVMSPPDTLSKDK 304

Query: 303 ALEKYKYEQSLEHTSQFVEKLEKELEDFHKHLAQFKRKKEEA 345
           ALEKY+YEQSLEHTSQF+EKLEKELEDF KHLAQFKR+KE+A
Sbjct: 305 ALEKYRYEQSLEHTSQFIEKLEKELEDFQKHLAQFKRRKEDA 344

[Close]

BLAST of CmaCh19G002610 vs. NCBI nr
Match: gi|1009151157|ref|XP_015893402.1| (PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic isoform X1 [Ziziphus jujuba])

HSP 1 Score: 412.9 bits (1060), Expect = 5.5e-112
Identity = 225/343 (65.60%), Postives = 266/343 (77.55%), Query Frame = 1


Query: 11  ISRDSLYGFISLIRNVSRLSLFNIPTSFGQS-SYESCEHQISNCISKSLQESTSIRYPPG 70
           I+RDSL  F  L   VS +SL    T F ++ +  +C H+ S  +S+ L E         
Sbjct: 18  ITRDSLVPFCRLAHKVSDISLS--ATFFRRTLACIACMHKQSYSVSRPLLEVPYAISALD 77

Query: 71  FFFTKRYSMCESLGGFEKWQSVRHFSNGAVELKTDSNIVRFSFGGSSSTNGSPRKQKKVA 130
           F   +R +M  +   F KW   R+ SN +V+LKTDSNI++FS G     NGS  K KK  
Sbjct: 78  FSLVQRRNMLVAQSNFRKWIFSRYNSNTSVQLKTDSNIIKFSIG---IHNGSSPKGKKTT 137

Query: 131 K-AKLSKKAKLNELRLYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLIEKLRKFEVPKS 190
           K  K+SKKAKLNELR YRLKAKKK  SPNPEVRIRY LEKAKRKE WLIEKLRKFE+ K+
Sbjct: 138 KQVKMSKKAKLNELRFYRLKAKKKMNSPNPEVRIRYKLEKAKRKETWLIEKLRKFEISKA 197

Query: 191 VLENYDPEILTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLNMHLHWKKHETVKVICKP 250
             E YDPEILTEEEKHYLKRTGEKKK++V +GRRGVFGGVVLNMHLHWK HETVKVIC+P
Sbjct: 198 PAETYDPEILTEEEKHYLKRTGEKKKHYVPVGRRGVFGGVVLNMHLHWKNHETVKVICRP 257

Query: 251 CKPGQVHEYAEELARLSKGIVIDIKPNNSIVFYRGKNYVQPEVMSPPDTLSKDKALEKYK 310
           CKPGQ+HEYAEELARLSKGIVIDIKPNN+I+FYRGKNYVQPE+MSPP+TLSK+KALEKYK
Sbjct: 258 CKPGQIHEYAEELARLSKGIVIDIKPNNTIIFYRGKNYVQPEMMSPPETLSKNKALEKYK 317

Query: 311 YEQSLEHTSQFVEKLEKELEDFHKHLAQFKRKKEEAAVEFMVN 352
           Y QSLEHTSQF+EKLEKELE++H+HLA++K+ K  ++ +F+ N
Sbjct: 318 YLQSLEHTSQFIEKLEKELEEYHRHLARYKQGKTYSSQDFVDN 355

[Close]

BLAST of CmaCh19G002610 vs. NCBI nr
Match: gi|802542415|ref|XP_012081307.1| (PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Jatropha curcas])

HSP 1 Score: 410.6 bits (1054), Expect = 2.7e-111
Identity = 210/277 (75.81%), Postives = 235/277 (84.84%), Query Frame = 1


Query: 68  PGFFFTKRYSMCESLGGFEKWQSVRHFSNGAVELKTDSNIVRFSFGGSSSTNGSPRKQKK 127
           P F  T+R ++  S      W   R  S  + ELKTD+++VRF+FG     NGS  K+KK
Sbjct: 77  PNFLLTQRLNVFASHSVLRSWVYRRWMSRASFELKTDNDVVRFAFGKQPGKNGSSEKRKK 136

Query: 128 VAK-AKLSKKAKLNELRLYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLIEKLRKFEVP 187
             K  K+S+KAKLNELR YRLKAKKKK SPNPEVRIRY LEKAKRKE WLIEKLRKFEVP
Sbjct: 137 TTKRVKMSRKAKLNELRFYRLKAKKKKNSPNPEVRIRYKLEKAKRKEVWLIEKLRKFEVP 196

Query: 188 KSVLENYDPEILTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLNMHLHWKKHETVKVIC 247
           K   E YDPEILTEEEKHYLKRTGEKKKNFVL+GRRGVFGGVVLNMHLHWKKHETVKVIC
Sbjct: 197 KIPAEVYDPEILTEEEKHYLKRTGEKKKNFVLVGRRGVFGGVVLNMHLHWKKHETVKVIC 256

Query: 248 KPCKPGQVHEYAEELARLSKGIVIDIKPNNSIVFYRGKNYVQPEVMSPPDTLSKDKALEK 307
           +PCKPGQ+HEYAEELARLSKGIVIDIKPNNSIVFYRGKNYVQPEVMSPP+TLSK KALEK
Sbjct: 257 RPCKPGQIHEYAEELARLSKGIVIDIKPNNSIVFYRGKNYVQPEVMSPPNTLSKQKALEK 316

Query: 308 YKYEQSLEHTSQFVEKLEKELEDFHKHLAQFKRKKEE 344
           YKYEQSLEHTSQF+EKLEKELE++ +H+A++++ KE+
Sbjct: 317 YKYEQSLEHTSQFIEKLEKELEEYLEHVARYRKLKED 353

[Close]

BLAST of CmaCh19G002610 vs. NCBI nr
Match: gi|947093094|gb|KRH41679.1| (hypothetical protein GLYMA_08G043700 [Glycine max])

HSP 1 Score: 406.0 bits (1042), Expect = 6.8e-110
Identity = 216/339 (63.72%), Postives = 258/339 (76.11%), Query Frame = 1


Query: 8   SIAISRDSLYGFISLIRNVSRLSLFNIPTSFGQS-SYESCEHQISNCISKSLQESTSIRY 67
           S   +RDSL+    L+ +V  ++     TS+  S + + C HQ +    + L    S+  
Sbjct: 15  SCTFNRDSLFWLCCLVEHVPTIASSPTTTSYFWSFTPDKCIHQRTYRTPRHLSRVPSLSS 74

Query: 68  PPGFFFTKRYSMCESLGGFEKWQSVRHFSNGAVELKTDSNIVRFSFGGSSSTNGSPRKQK 127
            PGF   +R ++         W   R+ SN +VELKTD+N+VRFS   S   N   + Q 
Sbjct: 75  RPGFLLMQRSNIFGIHDILGNWLPARYISNESVELKTDNNVVRFSLDKSDDINYGKKSQL 134

Query: 128 KVAKAKLSKKAKLNELRLYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLIEKLRKFEVP 187
              + K+S+KAKLNELR YRLKAKKK  SPNPEVRI Y LEKAKRKE WL+EKLRKF+VP
Sbjct: 135 N-KRVKMSRKAKLNELRFYRLKAKKKMISPNPEVRITYKLEKAKRKETWLVEKLRKFDVP 194

Query: 188 KSVLENYDPEILTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLNMHLHWKKHETVKVIC 247
           KS  E +DPEILTEEE+HYLKRTGEKKK++V +GRRGVFGGVVLNMHLHWK HETVKVIC
Sbjct: 195 KSPPETFDPEILTEEERHYLKRTGEKKKHYVPVGRRGVFGGVVLNMHLHWKNHETVKVIC 254

Query: 248 KPCKPGQVHEYAEELARLSKGIVIDIKPNNSIVFYRGKNYVQPEVMSPPDTLSKDKALEK 307
           KPCKPGQVHEYAEELARLSKGIVIDIKPNN+I+FYRGKNYVQPEVMSPP+TLSK KALEK
Sbjct: 255 KPCKPGQVHEYAEELARLSKGIVIDIKPNNTIIFYRGKNYVQPEVMSPPNTLSKVKALEK 314

Query: 308 YKYEQSLEHTSQFVEKLEKELEDFHKHLAQFKRKKEEAA 346
           Y+YEQSLEHTSQF+E+LEKELE++H+HLA+FK+ KE+ A
Sbjct: 315 YRYEQSLEHTSQFIERLEKELEEYHQHLAKFKKGKEDNA 352

The following BLAST results are available for this feature:

BLAST of CmaCh19G002610 vs. Swiss-Prot


Match Name	E-value	Identity	Description
Y3544_ARATH	1.9e-40	45.83	Uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Arabid...	[more]
CFM2_ARATH	3.8e-20	31.49	CRM-domain containing factor CFM2, chloroplastic OS=Arabidopsis thaliana GN=CFM2...	[more]
CFM3_ORYSJ	6.5e-20	35.08	CRM-domain containing factor CFM3, chloroplastic/mitochondrial OS=Oryza sativa s...	[more]
CFM3_MAIZE	1.2e-18	35.68	CRM-domain containing factor CFM3, chloroplastic/mitochondrial OS=Zea mays GN=CF...	[more]
CFM3A_ARATH	3.6e-18	37.30	CRM-domain containing factor CFM3A, chloroplastic/mitochondrial OS=Arabidopsis t...	[more]

BLAST of CmaCh19G002610 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K5Y2_CUCSA	5.1e-157	83.85	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G062730 PE=4 SV=1	[more]
A0A067LDM8_JATCU	1.9e-111	75.81	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09572 PE=4 SV=1	[more]
K7L4Y2_SOYBN	4.7e-110	63.72	Uncharacterized protein OS=Glycine max GN=GLYMA_08G043700 PE=4 SV=1	[more]
K7L4Y3_SOYBN	4.7e-110	63.72	Uncharacterized protein OS=Glycine max GN=GLYMA_08G043700 PE=4 SV=1	[more]
A0A0B2Q5J0_GLYSO	4.7e-110	63.72	Putative CRM domain-containing protein, chloroplastic OS=Glycine soja GN=glysoja...	[more]

BLAST of CmaCh19G002610 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G13070.1	1.4e-108	62.39	RNA-binding CRS1 / YhbY (CRM) domain protein	[more]
AT2G28480.1	2.7e-56	54.67	RNA-binding CRS1 / YhbY (CRM) domain protein	[more]
AT3G25440.1	1.1e-41	45.83	RNA-binding CRS1 / YhbY (CRM) domain protein	[more]
AT3G27550.1	2.4e-36	41.59	RNA-binding CRS1 / YhbY (CRM) domain protein	[more]
AT3G01370.1	2.1e-21	31.49	CRM family member 2	[more]

BLAST of CmaCh19G002610 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778724321\|ref\|XP_011658783.1\|	7.4e-157	83.85	PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplasti...	[more]
gi\|659110425\|ref\|XP_008455218.1\|	1.8e-155	85.09	PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplasti...	[more]
gi\|1009151157\|ref\|XP_015893402.1\|	5.5e-112	65.60	PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplasti...	[more]
gi\|802542415\|ref\|XP_012081307.1\|	2.7e-111	75.81	PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplasti...	[more]
gi\|947093094\|gb\|KRH41679.1\|	6.8e-110	63.72	hypothetical protein GLYMA_08G043700 [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001890	RNA-binding_CRM

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh19G002610.1	CmaCh19G002610.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001890	RNA-binding, CRM domain	GENE3D	G3DSA:3.30.110.60		coord: 198..292 score: 1.3
IPR001890	RNA-binding, CRM domain	PFAM	PF01985	CRS1_YhbY	coord: 198..282 score: 5.7
IPR001890	RNA-binding, CRM domain	SMART	SM01103	CRS1_YhbY_2	coord: 198..282 score: 1.6
IPR001890	RNA-binding, CRM domain	PROFILE	PS51295	CRM	coord: 196..293 score: 19
IPR001890	RNA-binding, CRM domain	unknown	SSF75471	YhbY-like	coord: 197..292 score: 1.96
None	No IPR available	unknown	Coil	Coil	coord: 320..340 scor
None	No IPR available	PANTHER	PTHR31426	FAMILY NOT NAMED	coord: 7..345 score: 6.5E
None	No IPR available	PANTHER	PTHR31426:SF3	SUBFAMILY NOT NAMED	coord: 7..345 score: 6.5E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh19G002610	Cucsa.217840	Cucumber (Gy14) v1	cgycmaB0625
CmaCh19G002610	Csa7G062730	Cucumber (Chinese Long) v2	cmacuB532
CmaCh19G002610	MELO3C018653	Melon (DHL92) v3.5.1	cmameB455
CmaCh19G002610	ClCG09G015320	Watermelon (Charleston Gray)	cmawcgB444
CmaCh19G002610	CSPI07G05440	Wild cucumber (PI 183967)	cmacpiB538
CmaCh19G002610	CmoCh19G002820	Cucurbita moschata (Rifu)	cmacmoB508
CmaCh19G002610	Lsi03G007720	Bottle gourd (USVL1VR-Ls)	cmalsiB482
CmaCh19G002610	Cp4.1LG15g02330	Cucurbita pepo (Zucchini)	cmacpeB522
CmaCh19G002610	MELO3C018653.2	Melon (DHL92) v3.6.1	cmamedB528
CmaCh19G002610	CsaV3_7G006390	Cucumber (Chinese Long) v3	cmacucB0642
CmaCh19G002610	Cla97C09G177310	Watermelon (97103) v2	cmawmbB552
CmaCh19G002610	Bhi05G000689	Wax gourd	cmawgoB0655
CmaCh19G002610	Carg24503	Silver-seed gourd	carcmaB1339

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh19G002610	Cucurbita maxima (Rimu)	cmacmaB153
CmaCh19G002610	Cucurbita moschata (Rifu)	cmacmoB493
CmaCh19G002610	Cucurbita pepo (Zucchini)	cmacpeB538
CmaCh19G002610	Cucumber (Gy14) v2	cgybcmaB949