Cla97C09G177310 (gene) Watermelon (97103) v2

Overview
NameCla97C09G177310
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionRNA-binding CRS1 / YhbY (CRM) domain protein
LocationCla97Chr09 : 27584832 .. 27587310 (+)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTCGGGGTTGCGCTCTATCCATCACCATTTCAAGGTACTTTTCTCCATCTCTTTAAATCTCATGGGTTTCATTCAATAGTTTTGGAATCGAATATATTTCCATATTTATCAAATTCATCTTAACAGAGTATATCTTCTCGTTTAAATCTGTAGTACTCATTATTTTGCATTATAACTAGAATTTTTTTAAGTAGATTTCATTTTGTCTATCAGATTTTCCATCTATGTATACATTTTCCCTTTGGAGGCATATTGAATTGGATGATTGTGATGTGATGTTTATGCAGGGATTCATTGTTTGGATTCATTTCTTTGATTAGAAATGTGTCACATCTATCTTTATTGAACATACCTGCATCGTTTGGGCAGTCTTCATATGGAAGTTGTGAGCATCAAATAAGTAATCGTACAGTAAAGTCTCTCCAAGAATCAACATATATACACTGTCCGTCTGGCTTCCTTTTTACTAGGAGATATAGTATGTGGGAGAGCTTTAGTGGGTTTAAAAAATGGCAATCTGTTAGGTATTTTAGCAATGCAGCTGTGGAGCTTAAGACAGACTGCAATATTGTCAGGTTTTCTTTTGGTGAGCCTTCTAGTAGTAACGGTTCCCCACTAAAACAAAAGAAGGTGGCAAAAACCAAATTTTCTAAGAAGGCCAAATTGAATGAACTCCGACTCTATCGTCTTAAGGCAAAAAAGAAGAAGACATCCCCCAATCCAGAAGTTAGGATCAGATATTCCCTTGAAAAGGTTGGATACCATCTTTAATTTATAGTTATACTTCCAGCTTATAAGTTATAATTGAGTGTTAGTCTACTCTTCCTCTATAGAAACGTGTGCCACAATCTTCTTGTGAGAGGAGTATTAGATTTCAATGTTTACTTTTCAGCTTTTCATCCATATATCATATGTTTGTTACAAGTATGAAGGTGATTGAGGTTTGATGATCATTTTTCATATGAACTCTTTGCCACTTTTTCTCCGAATTCTTTTGCTTGACACATTTGTAAAACTATGAAAGTTTATTCTTTTGTCTGGTCTGTGTATTGACCGTGCATGACTGATGATTCATAATGTCCTGTGATTGTCATTAAAGTTTAACTTAAAGTTTCATGTAAAATATTTTCTTTTTTATAAGAATCGTTTGTAGTGAACAAAAAGAAGTATTTCATATAAAAATTTCAAAGCAAGAGCAAGAAGAAAAACAATTTATTTGAATCTTAAACCTTCAATGCAATGTAAGTGCATATTAAAGGTTCAGTTGAATTTTAAATTAATATTTAGGACTAATTGAATTGTTCTGAAACCTCTTAATGATCATTTTTCATATGAACTATGATGTTTTTTGATCTTTGAAGAAGCAAGTAATATATGTAGGCCAAAAGAAAAGAAGCGTGGCTAATTGAGAAGTTGAGGAAATTTGAGGTTCCAAAGTCTGTAATAGAAAAGTATGATCCTGAAATTCTTACTGAGGAAGAGAAGCACTACTTGAAGCGTACAGGGGAGAAAAAGAAGAACTATGTTCTATTGGGGAGGCGAGGAGTCTTTGGTGGTGTTGTTCTCAATATGCATTTGCATTGGAAGAAGCATGAAACTGTTAAAGTTATTTGCAAGCCTTGCAAGCCTGGGCAGGTTCATGAATATGCCGAAGAACTTGCTCGATTAAGCAAAGGCATTGTGATTGATATTAAACCCAACAATAGCATAATTCTTTATCGGGGAAAGAACTATGTGCAACCCAAAGTAATGTCACCTCCAGATACGCTATCAAAAGACAAGGTAAGCATATTTCACTCCTTATCTGGTTTGTAAATAAGAGAGGTCCAGACCTGAGTGCAGAAGGGGAGTGATGTAACTTGTAACTAATTTTTGTGTGAAGGATTGTGTTAGGATACTTAGTAACTAGAATCAAGATCTAGAATACTTTGAAATAGAAAAATAATTACAAGATAAATCAAGTATAAGGGCACTTGAAACCAAACTCTTGAGTATGCTAACCCAAGCCCTAGATCACCCCACGAATTGCCCACCTTCACTCGCTCACCCTCCTATTTATAACAAGATTCACTAACTTCCTATTTAATTACTCGTATACCCTTTATTAATGCCATACTAATATTCTTATCTGGGTATCTTACAAAATGGCACCCAATAAGTTTATAATTTTGTTTGTTTAGAGAAGGATGAAAGAGGAGAGACATCAGAGTAGATAATGATATAGATCGAATCATGAAAGTCTATAGTTTTCCTTTAATGTTGCAATTTTCCAATTTAAGAAGCTATTGGAAAATGACTCTAGCTTTAAACAAGCAACATAACTTTTCCTATTTTTTATTGCAGGCCTTGGAAAAATACAAGTATGAACAATCACTTGAACATACAAGTCAGTTCATTGAAAAATTGGAGAAAGAACTGGAAGATTTTCAGAAGCATCTTGCTCAGTTCAAGAAGAGGAAAAAGGAAGATGCTTAG

mRNA sequence

ATGCCTCGGGGTTGCGCTCTATCCATCACCATTTCAAGGGATTCATTGTTTGGATTCATTTCTTTGATTAGAAATGTGTCACATCTATCTTTATTGAACATACCTGCATCGTTTGGGCAGTCTTCATATGGAAGTTGTGAGCATCAAATAAGTAATCGTACAGTAAAGTCTCTCCAAGAATCAACATATATACACTGTCCGTCTGGCTTCCTTTTTACTAGGAGATATAGTATGTGGGAGAGCTTTAGTGGGTTTAAAAAATGGCAATCTGTTAGGTATTTTAGCAATGCAGCTGTGGAGCTTAAGACAGACTGCAATATTGTCAGGTTTTCTTTTGGTGAGCCTTCTAGTAGTAACGGTTCCCCACTAAAACAAAAGAAGGTGGCAAAAACCAAATTTTCTAAGAAGGCCAAATTGAATGAACTCCGACTCTATCGTCTTAAGGCAAAAAAGAAGAAGACATCCCCCAATCCAGAAGTTAGGATCAGATATTCCCTTGAAAAGGCCAAAAGAAAAGAAGCGTGGCTAATTGAGAAGTTGAGGAAATTTGAGGTTCCAAAGTCTGTAATAGAAAAGTATGATCCTGAAATTCTTACTGAGGAAGAGAAGCACTACTTGAAGCGTACAGGGGAGAAAAAGAAGAACTATGTTCTATTGGGGAGGCGAGGAGTCTTTGGTGGTGTTGTTCTCAATATGCATTTGCATTGGAAGAAGCATGAAACTGTTAAAGTTATTTGCAAGCCTTGCAAGCCTGGGCAGGTTCATGAATATGCCGAAGAACTTGCTCGATTAAGCAAAGGCATTGTGATTGATATTAAACCCAACAATAGCATAATTCTTTATCGGGGAAAGAACTATGTGCAACCCAAAGTAATGTCACCTCCAGATACGCTATCAAAAGACAAGGCCTTGGAAAAATACAAGTATGAACAATCACTTGAACATACAAGTCAGTTCATTGAAAAATTGGAGAAAGAACTGGAAGATTTTCAGAAGCATCTTGCTCAGTTCAAGAAGAGGAAAAAGGAAGATGCTTAG

Coding sequence (CDS)

ATGCCTCGGGGTTGCGCTCTATCCATCACCATTTCAAGGGATTCATTGTTTGGATTCATTTCTTTGATTAGAAATGTGTCACATCTATCTTTATTGAACATACCTGCATCGTTTGGGCAGTCTTCATATGGAAGTTGTGAGCATCAAATAAGTAATCGTACAGTAAAGTCTCTCCAAGAATCAACATATATACACTGTCCGTCTGGCTTCCTTTTTACTAGGAGATATAGTATGTGGGAGAGCTTTAGTGGGTTTAAAAAATGGCAATCTGTTAGGTATTTTAGCAATGCAGCTGTGGAGCTTAAGACAGACTGCAATATTGTCAGGTTTTCTTTTGGTGAGCCTTCTAGTAGTAACGGTTCCCCACTAAAACAAAAGAAGGTGGCAAAAACCAAATTTTCTAAGAAGGCCAAATTGAATGAACTCCGACTCTATCGTCTTAAGGCAAAAAAGAAGAAGACATCCCCCAATCCAGAAGTTAGGATCAGATATTCCCTTGAAAAGGCCAAAAGAAAAGAAGCGTGGCTAATTGAGAAGTTGAGGAAATTTGAGGTTCCAAAGTCTGTAATAGAAAAGTATGATCCTGAAATTCTTACTGAGGAAGAGAAGCACTACTTGAAGCGTACAGGGGAGAAAAAGAAGAACTATGTTCTATTGGGGAGGCGAGGAGTCTTTGGTGGTGTTGTTCTCAATATGCATTTGCATTGGAAGAAGCATGAAACTGTTAAAGTTATTTGCAAGCCTTGCAAGCCTGGGCAGGTTCATGAATATGCCGAAGAACTTGCTCGATTAAGCAAAGGCATTGTGATTGATATTAAACCCAACAATAGCATAATTCTTTATCGGGGAAAGAACTATGTGCAACCCAAAGTAATGTCACCTCCAGATACGCTATCAAAAGACAAGGCCTTGGAAAAATACAAGTATGAACAATCACTTGAACATACAAGTCAGTTCATTGAAAAATTGGAGAAAGAACTGGAAGATTTTCAGAAGCATCTTGCTCAGTTCAAGAAGAGGAAAAAGGAAGATGCTTAG

Protein sequence

MPRGCALSITISRDSLFGFISLIRNVSHLSLLNIPASFGQSSYGSCEHQISNRTVKSLQESTYIHCPSGFLFTRRYSMWESFSGFKKWQSVRYFSNAAVELKTDCNIVRFSFGEPSSSNGSPLKQKKVAKTKFSKKAKLNELRLYRLKAKKKKTSPNPEVRIRYSLEKAKRKEAWLIEKLRKFEVPKSVIEKYDPEILTEEEKHYLKRTGEKKKNYVLLGRRGVFGGVVLNMHLHWKKHETVKVICKPCKPGQVHEYAEELARLSKGIVIDIKPNNSIILYRGKNYVQPKVMSPPDTLSKDKALEKYKYEQSLEHTSQFIEKLEKELEDFQKHLAQFKKRKKEDA
Homology
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BLAST of Cla97C09G177310 vs. NCBI nr
Match: XP_008455218.1 (PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Cucumis melo])

HSP 1 Score: 523.1 bits (1346), Expect = 7.2e-145
Identity = 280/344 (81.40%), Postives = 298/344 (86.63%), Query Frame = 0 

Query: 1   MPRGCALS-ITISRDSLFGFISLIRNVSHLSLLNIPASFGQSSYGSCEHQISNRTVKSLQ 60
           MPR    S ITISR SLFGF SLIRN S LSLL++P SFGQSS+GSCEHQ S+R VKSL 
Sbjct: 1   MPRCRGQSIITISRGSLFGFTSLIRNASPLSLLSVPTSFGQSSHGSCEHQASSRIVKSLN 60

Query: 61  ESTYIHCPSGFLFTRRYSMWESFSGFKKWQSVRYFSNAAVELKTDCNIVRFSFGEPSSSN 120
           EST   CP G   T RYSMWES+ GFK+WQSVR+FSNA VELKTD N VRFSFG PSS+N
Sbjct: 61  ESTSRDCPPGSSLTWRYSMWESYGGFKRWQSVRHFSNAVVELKTDSNTVRFSFG-PSSTN 120

Query: 121 GSPLKQKKVAKTKFSKKAKLNELRLYRLKAXXXXXXXXXXVRIRYSLEKAKRKEAWLIEK 180
           GS LKQKKVAKTK SKK KLNELRLYRLK XXXXXX    VRIRYSLEKAKRKEAWLIEK
Sbjct: 121 GSQLKQKKVAKTKLSKKDKLNELRLYRLKXXXXXXXPNPEVRIRYSLEKAKRKEAWLIEK 180

Query: 181 LRKFEVPKSVIEKYDPEILTEEEKHYLKRTGEKKKNYVLLGRRGVFGGVVLNMHLHWKKH 240
           LRKFE+PKSV+EKYDPEILTEEEKHYLKRTGEKKKN+VLLGRRGVFGGVVLNMH+HWKKH
Sbjct: 181 LRKFEIPKSVVEKYDPEILTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLNMHMHWKKH 240

Query: 241 ETVKVICKPCKPGQVHEYAEELARLSKGIVIDIKPNNSIILYRGKNYVQPKVMSPPDTLS 300
           ETVKVICKPCKPGQVHEYAEEL+RLSKGIVIDIKPNNSII YRGKNYVQP+VMSPPDTLS
Sbjct: 241 ETVKVICKPCKPGQVHEYAEELSRLSKGIVIDIKPNNSIIFYRGKNYVQPEVMSPPDTLS 300

Query: 301 KDKALEKYKYEQSLEHTSQFIEKLEKEXXXXXXXXXXXKKRKKE 344
           KDKALEKY+YEQSLEHTSQFIEKLEKE           K+RK++
Sbjct: 301 KDKALEKYRYEQSLEHTSQFIEKLEKELEDFQKHLAQFKRRKED 343

[Close]
BLAST of Cla97C09G177310 vs. NCBI nr
Match: XP_022141994.1 (uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Momordica charantia])

HSP 1 Score: 521.9 bits (1343), Expect = 1.6e-144
Identity = 283/345 (82.03%), Postives = 299/345 (86.67%), Query Frame = 0 

Query: 1   MPRGCALSITISRDSLFGFISLIRNVSHLSLLNIPASFGQSSYGSCEHQISNRTVKSLQE 60
           MPRG  LS  ++R+SL GFISLIRNVS  SL NIPASFGQS YGSCEHQ SN  V  LQE
Sbjct: 1   MPRGRNLSNAVTRNSLVGFISLIRNVSRRSLSNIPASFGQSKYGSCEHQRSNHIVTPLQE 60

Query: 61  STYIHCPSGFLFTRRYSMWESFSGFKKWQSVRYFSNAAVELKTDCNIVRFSFGEPSSSNG 120
           ST IH P GFLF+RRY++ E   GFKKWQS R+F + AVELKTD NIVRFSFG PS +NG
Sbjct: 61  STSIHFPPGFLFSRRYNVPEFLGGFKKWQSFRHFRSVAVELKTDSNIVRFSFGRPSVTNG 120

Query: 121 SPLKQKKVAKTKFSKKAKLNELRLYRLKAXXXXXXXXXXVRIRYSLEKAKRKEAWLIEKL 180
           SP KQKKVAKTK SKKAKLNELRLYRLK XXXXXXXXXXVRIRYSLEKAKRKEAWLIEKL
Sbjct: 121 SPPKQKKVAKTKLSKKAKLNELRLYRLKXXXXXXXXXXXVRIRYSLEKAKRKEAWLIEKL 180

Query: 181 RKFEVPKSVIEKYDPEILTEEEKHYLKRTGEKKKNYVLLGRRGVFGGVVLNMHLHWKKHE 240
           RKFEV K V+EKYDPEILTEEEKH+LKRTGEKKKN+VLLGRRGVFGGVVLNMHLHWKKHE
Sbjct: 181 RKFEVSKPVVEKYDPEILTEEEKHFLKRTGEKKKNFVLLGRRGVFGGVVLNMHLHWKKHE 240

Query: 241 TVKVICKPCKPGQVHEYAEELARLSKGIVIDIKPNNSIILYRGKNYVQPKVMSPPDTLSK 300
           TVKVICKPCKPGQVHEYAEEL RLSKGIV+DIKPNN+II YRGKNYVQP+VMSPPDTLSK
Sbjct: 241 TVKVICKPCKPGQVHEYAEELTRLSKGIVVDIKPNNAIIFYRGKNYVQPEVMSPPDTLSK 300

Query: 301 DKALEKYKYEQSLEHTSQFIEKLEKEXXXXXXXXXXXKKRKKEDA 346
           DKA+EKYKYEQSLEHTSQFIEKLEKE            KRKKEDA
Sbjct: 301 DKAMEKYKYEQSLEHTSQFIEKLEKELEDFQKHLAQF-KRKKEDA 344

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BLAST of Cla97C09G177310 vs. NCBI nr
Match: XP_011658783.1 (PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Cucumis sativus] >KGN43707.1 hypothetical protein Csa_7G062730 [Cucumis sativus])

HSP 1 Score: 506.5 bits (1303), Expect = 7.0e-140
Identity = 275/346 (79.48%), Postives = 290/346 (83.82%), Query Frame = 0 

Query: 1   MPRGCALS-ITISRDSLFGFISLIRNVSHLSLLNIPASFGQSSYGSCEHQISNRTVKSLQ 60
           MPR   LS I  SR SLFGFI LIRNVS LSLL+IP SF QSS+GS EHQ S+  VKSL 
Sbjct: 1   MPRCRGLSIIAFSRGSLFGFIPLIRNVSPLSLLSIPTSFEQSSHGSWEHQASSCIVKSLN 60

Query: 61  ESTYIHCPSGFLFTRRYSMWESFSGFKKWQSVRYFSNAAVELKTDCNIVRFSFGEPSSSN 120
           ES    CP GF FTRRYSM ES  GFK+WQSVR+FSNA VELKTD N VRFSFG PSS+N
Sbjct: 61  ESMSRDCPPGFSFTRRYSMRESSGGFKRWQSVRHFSNAVVELKTDNNTVRFSFGCPSSTN 120

Query: 121 GSPLKQKKVAKTKFSKKAKLNELRLYRLKAXXXXXXXXXXVRIRYSLEKAKRKEAWLIEK 180
           GS LKQ KVAKTK SKKAKLNELR YRLKA  XXX     VRIRYSLEKAKRKEAWLIEK
Sbjct: 121 GSRLKQ-KVAKTKMSKKAKLNELRFYRLKAKKXXXSPNPEVRIRYSLEKAKRKEAWLIEK 180

Query: 181 LRKFEVPKSVIEKYDPEILTEEEKHYLKRTGEKKKNYVLLGRRGVFGGVVLNMHLHWKKH 240
           LRKFE+PK  +EKYDPEILTEEEKHYLKRTGEKKKN+VLLGRRGVFGGVVLNMH+HWKKH
Sbjct: 181 LRKFEIPKPFVEKYDPEILTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLNMHMHWKKH 240

Query: 241 ETVKVICKPCKPGQVHEYAEELARLSKGIVIDIKPNNSIILYRGKNYVQPKVMSPPDTLS 300
           ETVKVICKPCKPGQVHEYAEEL RLSKGIVIDIKPNNSII YRGKNYVQP+VMSPP+TLS
Sbjct: 241 ETVKVICKPCKPGQVHEYAEELTRLSKGIVIDIKPNNSIIFYRGKNYVQPEVMSPPNTLS 300

Query: 301 KDKALEKYKYEQSLEHTSQFIEKLEKEXXXXXXXXXXXKKRKKEDA 346
           KDKALEKYKYEQSLEHTSQFIEKLEKE           K+RK++ A
Sbjct: 301 KDKALEKYKYEQSLEHTSQFIEKLEKELEDFQKHLAQFKRRKEDAA 345

[Close]
BLAST of Cla97C09G177310 vs. NCBI nr
Match: XP_022967603.1 (uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Cucurbita maxima])

HSP 1 Score: 490.7 bits (1262), Expect = 4.0e-135
Identity = 270/345 (78.26%), Postives = 283/345 (82.03%), Query Frame = 0 

Query: 1   MPRGCALSITISRDSLFGFISLIRNVSHLSLLNIPASFGQSSYGSCEHQISNRTVKSLQE 60
           M RG ALSI ISRDSL+GFISLIRNVS LSL NIP SFGQSSY SCEHQISN   KSLQE
Sbjct: 1   MSRGHALSIAISRDSLYGFISLIRNVSRLSLFNIPTSFGQSSYESCEHQISNCISKSLQE 60

Query: 61  STYIHCPSGFLFTRRYSMWESFSGFKKWQSVRYFSNAAVELKTDCNIVRFSFGEPSSSNG 120
           ST I  P GF FT+RYSM ES  GF+KWQSVR+FSN AVELKTD NIVRFSFG  SS+NG
Sbjct: 61  STSIRYPPGFFFTKRYSMCESLGGFEKWQSVRHFSNGAVELKTDSNIVRFSFGGSSSTNG 120

Query: 121 SPLKQKKVAKTKFSKKAKLNELRLYRLKAXXXXXXXXXXVRIRYSLEKAKRKEAWLIEKL 180
           SP KQKKVA                    XXXXXXXXXX     SLEKAKRKEAWLIEKL
Sbjct: 121 SPRKQKKVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLEKAKRKEAWLIEKL 180

Query: 181 RKFEVPKSVIEKYDPEILTEEEKHYLKRTGEKKKNYVLLGRRGVFGGVVLNMHLHWKKHE 240
           RKFEVPKSV+E YDPEILTEEEKHYLKRTGEKKKN+VLLGRRGVFGGVVLNMHLHWKKHE
Sbjct: 181 RKFEVPKSVLENYDPEILTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLNMHLHWKKHE 240

Query: 241 TVKVICKPCKPGQVHEYAEELARLSKGIVIDIKPNNSIILYRGKNYVQPKVMSPPDTLSK 300
           TVKVICKPCKPGQVHEYAEELARLSKGIVIDIKPNNSI+ YRGKNYVQP+VMSPPDTLSK
Sbjct: 241 TVKVICKPCKPGQVHEYAEELARLSKGIVIDIKPNNSIVFYRGKNYVQPEVMSPPDTLSK 300

Query: 301 DKALEKYKYEQSLEHTSQFIEKLEKEXXXXXXXXXXXKKRKKEDA 346
           DKALEKYKYEQSLEHTSQF+EKLEKE           K++K+E A
Sbjct: 301 DKALEKYKYEQSLEHTSQFVEKLEKELEDFHKHLAQFKRKKEEAA 345

[Close]
BLAST of Cla97C09G177310 vs. NCBI nr
Match: XP_022963469.1 (uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Cucurbita moschata])

HSP 1 Score: 480.7 bits (1236), Expect = 4.1e-132
Identity = 266/345 (77.10%), Postives = 282/345 (81.74%), Query Frame = 0 

Query: 1   MPRGCALSITISRDSLFGFISLIRNVSHLSLLNIPASFGQSSYGSCEHQISNRTVKSLQE 60
           M RG +LSI ISRDSL+GFISLIRNVS LSL NIP+SFGQSSY SCE+QISN   KSLQE
Sbjct: 1   MSRGHSLSIAISRDSLYGFISLIRNVSRLSLFNIPSSFGQSSYRSCEYQISNCISKSLQE 60

Query: 61  STYIHCPSGFLFTRRYSMWESFSGFKKWQSVRYFSNAAVELKTDCNIVRFSFGEPSSSNG 120
           ST I  P GF F +RYSM ES  GF+KWQSVR+FSN AVELKTD NIVRFSFG  SS+NG
Sbjct: 61  STSIRYPPGFFFAKRYSMCESLGGFEKWQSVRHFSNGAVELKTDSNIVRFSFGGSSSTNG 120

Query: 121 SPLKQKKVAKTKFSKKAKLNELRLYRLKAXXXXXXXXXXVRIRYSLEKAKRKEAWLIEKL 180
           SP KQKKVA                    XXXXXXXXXX     SLEKAKRKEAWLIEKL
Sbjct: 121 SPRKQKKVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLEKAKRKEAWLIEKL 180

Query: 181 RKFEVPKSVIEKYDPEILTEEEKHYLKRTGEKKKNYVLLGRRGVFGGVVLNMHLHWKKHE 240
           RKFEVPKSV+E YDPEILTEEEKHYLKRTGEKKKN++LLGRRGVFGGVVLNMHLHWKKHE
Sbjct: 181 RKFEVPKSVLENYDPEILTEEEKHYLKRTGEKKKNFMLLGRRGVFGGVVLNMHLHWKKHE 240

Query: 241 TVKVICKPCKPGQVHEYAEELARLSKGIVIDIKPNNSIILYRGKNYVQPKVMSPPDTLSK 300
           TVKVICKPCKPGQVHEYAEELARLSKGIVIDIKPNNSII YRGKNYV+P+VMSP DTLSK
Sbjct: 241 TVKVICKPCKPGQVHEYAEELARLSKGIVIDIKPNNSIIFYRGKNYVRPEVMSPSDTLSK 300

Query: 301 DKALEKYKYEQSLEHTSQFIEKLEKEXXXXXXXXXXXKKRKKEDA 346
           DKALEKYKYEQSLEHTSQFIEKLEKE           K++K+E A
Sbjct: 301 DKALEKYKYEQSLEHTSQFIEKLEKELEDFQKHLAQFKRKKEEAA 345

[Close]
BLAST of Cla97C09G177310 vs. TrEMBL
Match: tr|A0A1S3C151|A0A1S3C151_CUCME (uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495436 PE=4 SV=1)

HSP 1 Score: 523.1 bits (1346), Expect = 4.8e-145
Identity = 280/344 (81.40%), Postives = 298/344 (86.63%), Query Frame = 0 

Query: 1   MPRGCALS-ITISRDSLFGFISLIRNVSHLSLLNIPASFGQSSYGSCEHQISNRTVKSLQ 60
           MPR    S ITISR SLFGF SLIRN S LSLL++P SFGQSS+GSCEHQ S+R VKSL 
Sbjct: 1   MPRCRGQSIITISRGSLFGFTSLIRNASPLSLLSVPTSFGQSSHGSCEHQASSRIVKSLN 60

Query: 61  ESTYIHCPSGFLFTRRYSMWESFSGFKKWQSVRYFSNAAVELKTDCNIVRFSFGEPSSSN 120
           EST   CP G   T RYSMWES+ GFK+WQSVR+FSNA VELKTD N VRFSFG PSS+N
Sbjct: 61  ESTSRDCPPGSSLTWRYSMWESYGGFKRWQSVRHFSNAVVELKTDSNTVRFSFG-PSSTN 120

Query: 121 GSPLKQKKVAKTKFSKKAKLNELRLYRLKAXXXXXXXXXXVRIRYSLEKAKRKEAWLIEK 180
           GS LKQKKVAKTK SKK KLNELRLYRLK XXXXXX    VRIRYSLEKAKRKEAWLIEK
Sbjct: 121 GSQLKQKKVAKTKLSKKDKLNELRLYRLKXXXXXXXPNPEVRIRYSLEKAKRKEAWLIEK 180

Query: 181 LRKFEVPKSVIEKYDPEILTEEEKHYLKRTGEKKKNYVLLGRRGVFGGVVLNMHLHWKKH 240
           LRKFE+PKSV+EKYDPEILTEEEKHYLKRTGEKKKN+VLLGRRGVFGGVVLNMH+HWKKH
Sbjct: 181 LRKFEIPKSVVEKYDPEILTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLNMHMHWKKH 240

Query: 241 ETVKVICKPCKPGQVHEYAEELARLSKGIVIDIKPNNSIILYRGKNYVQPKVMSPPDTLS 300
           ETVKVICKPCKPGQVHEYAEEL+RLSKGIVIDIKPNNSII YRGKNYVQP+VMSPPDTLS
Sbjct: 241 ETVKVICKPCKPGQVHEYAEELSRLSKGIVIDIKPNNSIIFYRGKNYVQPEVMSPPDTLS 300

Query: 301 KDKALEKYKYEQSLEHTSQFIEKLEKEXXXXXXXXXXXKKRKKE 344
           KDKALEKY+YEQSLEHTSQFIEKLEKE           K+RK++
Sbjct: 301 KDKALEKYRYEQSLEHTSQFIEKLEKELEDFQKHLAQFKRRKED 343

[Close]
BLAST of Cla97C09G177310 vs. TrEMBL
Match: tr|A0A0A0K5Y2|A0A0A0K5Y2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G062730 PE=4 SV=1)

HSP 1 Score: 506.5 bits (1303), Expect = 4.6e-140
Identity = 275/346 (79.48%), Postives = 290/346 (83.82%), Query Frame = 0 

Query: 1   MPRGCALS-ITISRDSLFGFISLIRNVSHLSLLNIPASFGQSSYGSCEHQISNRTVKSLQ 60
           MPR   LS I  SR SLFGFI LIRNVS LSLL+IP SF QSS+GS EHQ S+  VKSL 
Sbjct: 1   MPRCRGLSIIAFSRGSLFGFIPLIRNVSPLSLLSIPTSFEQSSHGSWEHQASSCIVKSLN 60

Query: 61  ESTYIHCPSGFLFTRRYSMWESFSGFKKWQSVRYFSNAAVELKTDCNIVRFSFGEPSSSN 120
           ES    CP GF FTRRYSM ES  GFK+WQSVR+FSNA VELKTD N VRFSFG PSS+N
Sbjct: 61  ESMSRDCPPGFSFTRRYSMRESSGGFKRWQSVRHFSNAVVELKTDNNTVRFSFGCPSSTN 120

Query: 121 GSPLKQKKVAKTKFSKKAKLNELRLYRLKAXXXXXXXXXXVRIRYSLEKAKRKEAWLIEK 180
           GS LKQ KVAKTK SKKAKLNELR YRLKA  XXX     VRIRYSLEKAKRKEAWLIEK
Sbjct: 121 GSRLKQ-KVAKTKMSKKAKLNELRFYRLKAKKXXXSPNPEVRIRYSLEKAKRKEAWLIEK 180

Query: 181 LRKFEVPKSVIEKYDPEILTEEEKHYLKRTGEKKKNYVLLGRRGVFGGVVLNMHLHWKKH 240
           LRKFE+PK  +EKYDPEILTEEEKHYLKRTGEKKKN+VLLGRRGVFGGVVLNMH+HWKKH
Sbjct: 181 LRKFEIPKPFVEKYDPEILTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLNMHMHWKKH 240

Query: 241 ETVKVICKPCKPGQVHEYAEELARLSKGIVIDIKPNNSIILYRGKNYVQPKVMSPPDTLS 300
           ETVKVICKPCKPGQVHEYAEEL RLSKGIVIDIKPNNSII YRGKNYVQP+VMSPP+TLS
Sbjct: 241 ETVKVICKPCKPGQVHEYAEELTRLSKGIVIDIKPNNSIIFYRGKNYVQPEVMSPPNTLS 300

Query: 301 KDKALEKYKYEQSLEHTSQFIEKLEKEXXXXXXXXXXXKKRKKEDA 346
           KDKALEKYKYEQSLEHTSQFIEKLEKE           K+RK++ A
Sbjct: 301 KDKALEKYKYEQSLEHTSQFIEKLEKELEDFQKHLAQFKRRKEDAA 345

[Close]
BLAST of Cla97C09G177310 vs. TrEMBL
Match: tr|A0A2I4GE50|A0A2I4GE50_9ROSI (uncharacterized CRM domain-containing protein At3g25440, chloroplastic isoform X1 OS=Juglans regia OX=51240 GN=LOC109007096 PE=4 SV=1)

HSP 1 Score: 381.3 bits (978), Expect = 2.3e-102
Identity = 217/340 (63.82%), Postives = 247/340 (72.65%), Query Frame = 0 

Query: 6   ALSITISRDSLFGFISLIRNVSHLSLLNIPASFGQS-SYGSCEHQISNRTVKSLQESTYI 65
           A  I   R+SL  F  L++N+  LS L    SF QS SY  C  + S   V+ L E+  +
Sbjct: 9   ARGIIRRRESLHCFCCLLKNIPSLSALPAATSFTQSRSYSLCAGRRSCSAVEPLLEAPCV 68

Query: 66  HCPSGFLFTRRYSMWESFSGFKKWQSVRYFSNAAVELKTDCNIVRFSFGEPSSSNGSPLK 125
             PSGF    R +++  F     W   RY SNA+VELKT+ ++VRFS G+P+ +  S  +
Sbjct: 69  LSPSGFSLEHRLNVF-GFHTLGIWIPARYMSNASVELKTENDVVRFSLGKPADNAFSRTE 128

Query: 126 -QKKVAKTKFSKKAKLNELRLYRLKAXXXXXXXXXXVRIRYSLEKAKRKEAWLIEKLRKF 185
            +KK  + K SK+AKLNELR YRLKA          VRIRY LEKAKRKEAWLIE LRKF
Sbjct: 129 GKKKNKRVKISKRAKLNELRFYRLKAKKKMTSPNPEVRIRYKLEKAKRKEAWLIEMLRKF 188

Query: 186 EVPKSVIEKYDPEILTEEEKHYLKRTGEKKKNYVLLGRRGVFGGVVLNMHLHWKKHETVK 245
           EVPK+  E YDPEILTEEE+HY KRTGEKKKNYV +GRRGVFGGVVLNMHLHWKKHETVK
Sbjct: 189 EVPKAPPEIYDPEILTEEERHYFKRTGEKKKNYVPVGRRGVFGGVVLNMHLHWKKHETVK 248

Query: 246 VICKPCKPGQVHEYAEELARLSKGIVIDIKPNNSIILYRGKNYVQPKVMSPPDTLSKDKA 305
           VICKPCKPGQVH YAEELARLSKGIVIDIK N+ I+ YRGKNYVQPKVMSP DTLSKDKA
Sbjct: 249 VICKPCKPGQVHVYAEELARLSKGIVIDIKANDVILFYRGKNYVQPKVMSPLDTLSKDKA 308

Query: 306 LEKYKYEQSLEHTSQFIEKLEKEXXXXXXXXXXXKKRKKE 344
           LEKYKYEQSLEHTSQFIEKLE+E XX        KK K++
Sbjct: 309 LEKYKYEQSLEHTSQFIEKLEEELXXYQKHLARYKKAKED 347

[Close]
BLAST of Cla97C09G177310 vs. TrEMBL
Match: tr|A0A2P4HLP1|A0A2P4HLP1_QUESU (Putative crm domain-containing protein, chloroplastic OS=Quercus suber OX=58331 GN=CFP56_34112 PE=4 SV=1)

HSP 1 Score: 376.3 bits (965), Expect = 7.2e-101
Identity = 208/331 (62.84%), Postives = 234/331 (70.69%), Query Frame = 0 

Query: 12  SRDSLFGFISLIRNVSHLSLLNIPASFGQSSYGSCEHQISNRTVKSLQESTYIHCPSGFL 71
           +RDSL  F  L++N+  LS L    SF   SY +         V+ L E+  I  P  F 
Sbjct: 16  TRDSLLCFCCLLKNIPGLSSLPAATSFSMRSYSA---------VRPLLEAKRISSPLEFS 75

Query: 72  FTRRYSMWESFSGFKKWQSVRYFSNAAVELKTDCNIVRFSFGEPSSSNGSPLKQK-KVAK 131
             +R +M +     + W   RY S  + ELKT+ ++VRFS G    +NGS  K + K  +
Sbjct: 76  LVQRLNMLD-VHVIRNWIPARYMSKESFELKTENDVVRFSMGRVVDNNGSQTKGRVKTKR 135

Query: 132 TKFSKKAKLNELRLYRLKAXXXXXXXXXXVRIRYSLEKAKRKEAWLIEKLRKFEVPKSVI 191
            K SKKAKLNELR YRLKA          VRIRY LEKAKRKE WLIEKLRKFEVPK+  
Sbjct: 136 VKMSKKAKLNELRFYRLKAKKKMTSPNPEVRIRYKLEKAKRKEVWLIEKLRKFEVPKAPA 195

Query: 192 EKYDPEILTEEEKHYLKRTGEKKKNYVLLGRRGVFGGVVLNMHLHWKKHETVKVICKPCK 251
           E YDPEILTEEE+HYLKRTGEKKKNYV +GRRGVFGGVVLNMHLHWKKHETVKVICKPCK
Sbjct: 196 ETYDPEILTEEERHYLKRTGEKKKNYVPVGRRGVFGGVVLNMHLHWKKHETVKVICKPCK 255

Query: 252 PGQVHEYAEELARLSKGIVIDIKPNNSIILYRGKNYVQPKVMSPPDTLSKDKALEKYKYE 311
           PGQ+HEYAEEL RLSKGIVIDIK +N+II YRGKNYVQP+VMSP DTLSKDKALEKYK+E
Sbjct: 256 PGQIHEYAEELTRLSKGIVIDIKADNTIIFYRGKNYVQPQVMSPLDTLSKDKALEKYKFE 315

Query: 312 QSLEHTSQFIEKLEKEXXXXXXXXXXXKKRK 342
           QSLEHTSQFIEKLEKE           KK K
Sbjct: 316 QSLEHTSQFIEKLEKELEDYHDHLARHKKAK 336

[Close]
BLAST of Cla97C09G177310 vs. TrEMBL
Match: tr|A0A2P4HLL2|A0A2P4HLL2_QUESU (Putative crm domain-containing protein, chloroplastic OS=Quercus suber OX=58331 GN=CFP56_34112 PE=4 SV=1)

HSP 1 Score: 376.3 bits (965), Expect = 7.2e-101
Identity = 208/331 (62.84%), Postives = 234/331 (70.69%), Query Frame = 0 

Query: 12  SRDSLFGFISLIRNVSHLSLLNIPASFGQSSYGSCEHQISNRTVKSLQESTYIHCPSGFL 71
           +RDSL  F  L++N+  LS L    SF   SY +         V+ L E+  I  P  F 
Sbjct: 16  TRDSLLCFCCLLKNIPGLSSLPAATSFSMRSYSA---------VRPLLEAKRISSPLEFS 75

Query: 72  FTRRYSMWESFSGFKKWQSVRYFSNAAVELKTDCNIVRFSFGEPSSSNGSPLKQK-KVAK 131
             +R +M +     + W   RY S  + ELKT+ ++VRFS G    +NGS  K + K  +
Sbjct: 76  LVQRLNMLD-VHVIRNWIPARYMSKESFELKTENDVVRFSMGRVVDNNGSQTKGRVKTKR 135

Query: 132 TKFSKKAKLNELRLYRLKAXXXXXXXXXXVRIRYSLEKAKRKEAWLIEKLRKFEVPKSVI 191
            K SKKAKLNELR YRLKA          VRIRY LEKAKRKE WLIEKLRKFEVPK+  
Sbjct: 136 VKMSKKAKLNELRFYRLKAKKKMTSPNPEVRIRYKLEKAKRKEVWLIEKLRKFEVPKAPA 195

Query: 192 EKYDPEILTEEEKHYLKRTGEKKKNYVLLGRRGVFGGVVLNMHLHWKKHETVKVICKPCK 251
           E YDPEILTEEE+HYLKRTGEKKKNYV +GRRGVFGGVVLNMHLHWKKHETVKVICKPCK
Sbjct: 196 ETYDPEILTEEERHYLKRTGEKKKNYVPVGRRGVFGGVVLNMHLHWKKHETVKVICKPCK 255

Query: 252 PGQVHEYAEELARLSKGIVIDIKPNNSIILYRGKNYVQPKVMSPPDTLSKDKALEKYKYE 311
           PGQ+HEYAEEL RLSKGIVIDIK +N+II YRGKNYVQP+VMSP DTLSKDKALEKYK+E
Sbjct: 256 PGQIHEYAEELTRLSKGIVIDIKADNTIIFYRGKNYVQPQVMSPLDTLSKDKALEKYKFE 315

Query: 312 QSLEHTSQFIEKLEKEXXXXXXXXXXXKKRK 342
           QSLEHTSQFIEKLEKE           KK K
Sbjct: 316 QSLEHTSQFIEKLEKELEDYHDHLARHKKAK 336

[Close]
BLAST of Cla97C09G177310 vs. Swiss-Prot
Match: sp|Q67XL4|Y3544_ARATH (Uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At3g25440 PE=2 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.6e-39
Identity = 96/213 (45.07%), Postives = 134/213 (62.91%), Query Frame = 0 

Query: 116 SSSNGSPLKQKKVAKTKFSKKAKLNELRLYRLKAXXXXXXXXXXVRIRYSLEKAKRKEAW 175
           SS +G    + K  K K  K+A +  L+ +R K            +I   L KA++KE  
Sbjct: 96  SSQDGDSCTKLKRKKLK-GKRAVVRWLKFFRWKKKKEFERMTSEEKILNKLRKARKKEER 155

Query: 176 LIEKLRKFEVPKSVIEKYDPEILTEEEKHYLKRTGEKKKNYVLLGRRGVFGGVVLNMHLH 235
           L+E ++K E  +S    +DPEILT EE  Y  + G K KNYV +GRRG++ GV+LNMHLH
Sbjct: 156 LMETMKKLEPSESAETTHDPEILTPEEHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLH 215

Query: 236 WKKHETVKVICKPCKPGQVHEYAEELARLSKGIVIDIKPNNSIILYRGKNYVQP--KVMS 295
           WKKH+T++V+ K   P +V E A ELARL+ GIV+D+   N+II+YRGKNYVQP  ++MS
Sbjct: 216 WKKHQTLQVVIKTFTPDEVKEIAVELARLTGGIVLDVHEGNTIIMYRGKNYVQPPTEIMS 275

Query: 296 PPDTLSKDKALEKYKYEQSLEHTSQFIEKLEKE 327
           P  TL + KAL+K K   +L    ++I +LE+E
Sbjct: 276 PRITLPRKKALDKSKCRDALRAVRKYIPRLEQE 307

[Close]
BLAST of Cla97C09G177310 vs. Swiss-Prot
Match: sp|Q8L7C2|CFM2_ARATH (CRM-domain containing factor CFM2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CFM2 PE=1 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.2e-20
Identity = 60/150 (40.00%), Postives = 89/150 (59.33%), Query Frame = 0 

Query: 160 VRIRYSLEKAKRKEAWLIEKLRKFEVPKSVIEKYDPEILTEEEKHYLKRTGEKKKNYVLL 219
           +++  +LEK    E  L + L   E P+  +   D E +T +EK+ L++ G K K ++LL
Sbjct: 544 MKLSMALEKKANAEKVLAD-LENRESPQ--LSDIDKEGITNDEKYMLRKIGLKMKPFLLL 603

Query: 220 GRRGVFGGVVLNMHLHWKKHETVKVICKPCKPGQVHEYAEELARLSKGIVIDIK---PNN 279
           GRRGVF G + NMHLHWK  E VK+IC        H+ AE L   S GI++ ++      
Sbjct: 604 GRRGVFDGTIENMHLHWKYRELVKIICNEYSIEAAHKVAEILEAESGGILVAVEMVSKGY 663

Query: 280 SIILYRGKNYVQPKVMSPPDTLSKDKALEK 307
           +II+YRGKNY +P+ + P   LSK +AL++
Sbjct: 664 AIIVYRGKNYERPQCLRPQTLLSKREALKR 690

[Close]
BLAST of Cla97C09G177310 vs. Swiss-Prot
Match: sp|F4J2U9|CFM3A_ARATH (CRM-domain containing factor CFM3A, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=CFM3A PE=2 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 7.9e-18
Identity = 57/142 (40.14%), Postives = 83/142 (58.45%), Query Frame = 0 

Query: 191 EKYDPEILTEEEKHYLKRTGEKKKNYVLLGRRGVFGGVVLNMHLHWKKHETVKVICKPCK 250
           ++ DPE +T+EE+   ++ G K K ++LLGRRGVF G V NMHLHWK  E VK+I K   
Sbjct: 631 QREDPESITDEERFMFRKLGLKMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKAKT 690

Query: 251 PGQVHEYAEELARLSKGIVIDI---KPNNSIILYRGKNYVQPKVMSPPDTLSKDKAL--- 310
              V + A  L   S GI++ I       +II+YRG++Y +P ++ P + L+K KAL   
Sbjct: 691 FDGVKKVALALEAESGGILVSIDKVTKGYAIIVYRGQDYKRPTMLRPKNLLTKRKALARS 750

Query: 311 -EKYKYEQSLEHTSQFIEKLEK 326
            E  + E  L+H S    K ++
Sbjct: 751 IELQRREGLLKHISTMQAKAKQ 772

[Close]
BLAST of Cla97C09G177310 vs. Swiss-Prot
Match: sp|Q6YYA3|CRS1_ORYSJ (Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0360100 PE=2 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.0e-17
Identity = 59/159 (37.11%), Postives = 89/159 (55.97%), Query Frame = 0 

Query: 163 RYSLEKAKRKEAWLIEKL-RKFEVPKSVIEKY-----------DPEILTEEEKHYLKRTG 222
           ++ LEK  + + W +  L +K E    V+ K            D E+LTEEE+   ++ G
Sbjct: 519 KHRLEKELKDQEWRLSMLTKKIERSNQVLAKLHSSWSPSKKDGDRELLTEEERRIFRKIG 578

Query: 223 EKKKNYVLLGRRGVFGGVVLNMHLHWKKHETVKVICKPCKPGQVHEYAEELARLSKGIVI 282
            K   +VLLGRRGVF GV+  +H HWK  E VKVI K  +  Q+   +  L   + G +I
Sbjct: 579 LKMDEHVLLGRRGVFEGVIEEIHQHWKHKEVVKVITKQNQASQITYTSMMLEVETGGTLI 638

Query: 283 DIK---PNNSIILYRGKNYVQPKVMSPPDTLSKDKALEK 307
            I+    +++IILYRGKNY +P   +P + L+K +AL++
Sbjct: 639 AIERFTTSHAIILYRGKNYRRPTKSAPSNLLTKREALQR 677

[Close]
BLAST of Cla97C09G177310 vs. Swiss-Prot
Match: sp|Q2R1U8|CFM3_ORYSJ (CRM-domain containing factor CFM3, chloroplastic/mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=CFM3 PE=3 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.3e-17
Identity = 59/169 (34.91%), Postives = 90/169 (53.25%), Query Frame = 0 

Query: 161 RIRYSLEKAKRKEAWLIEKLRKFEVPKSVIEKYD-PEILTEEEKHYLKRTGEKKKNYVLL 220
           ++ + L+ A++K       L K E      E    PE +T+EE+   ++ G + K ++LL
Sbjct: 554 KLEWKLQLAQKKIEKAERVLGKVETALKPTEGIQPPETITDEERFMFRKLGLRMKAFLLL 613

Query: 221 GRRGVFGGVVLNMHLHWKKHETVKVICKPCKPGQVHEYAEELARLSKGIVID---IKPNN 280
           GRRGVF G + NMHLHWK  E VK++ K    G V + A  L   S GI++    +    
Sbjct: 614 GRRGVFDGTIENMHLHWKYRELVKILVKAKSFGDVKKIALSLEAESGGILVSVDKVSKGY 673

Query: 281 SIILYRGKNYVQPKVMSPPDTLSKDKALEKYKYEQSLEHTSQFIEKLEK 326
           +I+++RGK+Y +P  + P + LSK KAL +    Q  E  S  I  L +
Sbjct: 674 AIVVFRGKDYARPSKLRPRNLLSKRKALARSIEIQRREALSHHIATLNR 722

[Close]
BLAST of Cla97C09G177310 vs. TAIR10
Match: AT4G13070.1 (RNA-binding CRS1 / YhbY (CRM) domain protein)

HSP 1 Score: 354.8 bits (909), Expect = 6.2e-98
Identity = 184/267 (68.91%), Postives = 213/267 (79.78%), Query Frame = 0 

Query: 64  IHCPSGFLFTRRYSMWESFSGFKKWQSVRYFSNAAVELKTDCNIVRFSFGEPSSSNGSPL 123
           + C S      +   W  F+ +    S RY SN+ +EL+TD N+VRF+F   SSS  + +
Sbjct: 46  VQCKSASFDVSQAQRWNLFA-YDGLFSRRYLSNSTIELRTDDNVVRFAFNNVSSSGNNVV 105

Query: 124 ---KQKKVAKTKFSKKAKLNELRLYRLKAXXXXXXXXXXVRIRYSLEKAKRKEAWLIEKL 183
              K+KK  + K S+KAK+NELR YRLKA          VRIRY LEKAKRKE WLIEKL
Sbjct: 106 PTRKEKKWKRAKLSRKAKVNELRFYRLKAKKKMNSPNPEVRIRYKLEKAKRKEEWLIEKL 165

Query: 184 RKFEVPKSVIEKYDPEILTEEEKHYLKRTGEKKKNYVLLGRRGVFGGVVLNMHLHWKKHE 243
           RK++VPKS  E YDPE LTEEE+HYLKRTGEK+KN+VL+GRRGVFGGVVLN+HLHWKKHE
Sbjct: 166 RKYDVPKSPAEPYDPESLTEEEQHYLKRTGEKRKNFVLVGRRGVFGGVVLNLHLHWKKHE 225

Query: 244 TVKVICKPC-KPGQVHEYAEELARLSKGIVIDIKPNNSIILYRGKNYVQPKVMSPPDTLS 303
           TVKVICKPC KPGQVHEYAEELARLSKGIVID+KPNN+I+LYRGKNYV+P+VMSP DTLS
Sbjct: 226 TVKVICKPCNKPGQVHEYAEELARLSKGIVIDVKPNNTIVLYRGKNYVRPEVMSPVDTLS 285

Query: 304 KDKALEKYKYEQSLEHTSQFIEKLEKE 327
           KDKALEKY+YEQSLEHTS+FIEKLEKE
Sbjct: 286 KDKALEKYRYEQSLEHTSEFIEKLEKE 311

[Close]
BLAST of Cla97C09G177310 vs. TAIR10
Match: AT2G28480.1 (RNA-binding CRS1 / YhbY (CRM) domain protein)

HSP 1 Score: 204.5 bits (519), Expect = 1.0e-52
Identity = 105/166 (63.25%), Postives = 128/166 (77.11%), Query Frame = 0 

Query: 161 RIRYSLEKAKRKEAWLIEKLRKFEVPKSVIEKYDPEILTEEEKHYLKRTGEKKKNYVLLG 220
           RI+Y LEKAK KEA LIE+L+++EV K    +  P  +T EE+ YLK+ G+K+ NYV +G
Sbjct: 127 RIKYKLEKAKIKEALLIERLKRYEVAKVQGPEVRPHEITGEERFYLKKMGQKRSNYVPIG 186

Query: 221 RRGVFGGVVLNMHLHWKKHETVKVICKPCKPGQVHEYAEELARLSKGIVIDIKPNNSIIL 280
           RRGVFGGV+LNMHLHWKKHETVKVIC   KPGQV +YAEELA+LS G+ ++I  +++II 
Sbjct: 187 RRGVFGGVILNMHLHWKKHETVKVICNNSKPGQVQQYAEELAKLSGGVPVNIIGDDTIIF 246

Query: 281 YRGKNYVQPKVMSPPDTLSKDKALEKYKYEQSLEHTSQFIEKLEKE 327
           YRGK YVQP+VMSP DTLSK +A EK KYEQSLE    FI   EKE
Sbjct: 247 YRGKGYVQPQVMSPIDTLSKKRAYEKSKYEQSLESVRHFIAIAEKE 292

[Close]
BLAST of Cla97C09G177310 vs. TAIR10
Match: AT3G25440.1 (RNA-binding CRS1 / YhbY (CRM) domain protein)

HSP 1 Score: 164.9 bits (416), Expect = 9.1e-41
Identity = 96/213 (45.07%), Postives = 134/213 (62.91%), Query Frame = 0 

Query: 116 SSSNGSPLKQKKVAKTKFSKKAKLNELRLYRLKAXXXXXXXXXXVRIRYSLEKAKRKEAW 175
           SS +G    + K  K K  K+A +  L+ +R K            +I   L KA++KE  
Sbjct: 96  SSQDGDSCTKLKRKKLK-GKRAVVRWLKFFRWKKKKEFERMTSEEKILNKLRKARKKEER 155

Query: 176 LIEKLRKFEVPKSVIEKYDPEILTEEEKHYLKRTGEKKKNYVLLGRRGVFGGVVLNMHLH 235
           L+E ++K E  +S    +DPEILT EE  Y  + G K KNYV +GRRG++ GV+LNMHLH
Sbjct: 156 LMETMKKLEPSESAETTHDPEILTPEEHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLH 215

Query: 236 WKKHETVKVICKPCKPGQVHEYAEELARLSKGIVIDIKPNNSIILYRGKNYVQP--KVMS 295
           WKKH+T++V+ K   P +V E A ELARL+ GIV+D+   N+II+YRGKNYVQP  ++MS
Sbjct: 216 WKKHQTLQVVIKTFTPDEVKEIAVELARLTGGIVLDVHEGNTIIMYRGKNYVQPPTEIMS 275

Query: 296 PPDTLSKDKALEKYKYEQSLEHTSQFIEKLEKE 327
           P  TL + KAL+K K   +L    ++I +LE+E
Sbjct: 276 PRITLPRKKALDKSKCRDALRAVRKYIPRLEQE 307

[Close]
BLAST of Cla97C09G177310 vs. TAIR10
Match: AT3G27550.1 (RNA-binding CRS1 / YhbY (CRM) domain protein)

HSP 1 Score: 149.4 bits (376), Expect = 3.9e-36
Identity = 88/211 (41.71%), Postives = 132/211 (62.56%), Query Frame = 0 

Query: 116 SSSNGSPLKQKKVAKTKFSKKAKLNELRLYRLKAXXXXXXXXXXVRIRYSLEKAKRKEAW 175
           S+S G  ++ K  ++ +      L E+R  R K            R+ Y+L++AK+K A 
Sbjct: 13  STSRGRSMRSKVESRMRKESGKTLREIR--RAKKLKKKLMTDEE-RLIYNLKRAKKKVAL 72

Query: 176 LIEKLRKFEVPKSVIEKYDPEILTEEEKHYLKRTGEKKKNYVLLGRRGVFGGVVLNMHLH 235
           L++KL+K+++P+     +DPE+ T E+    K+ G K KNYV +G RGVFGGVV NMH+H
Sbjct: 73  LLQKLKKYDLPELPSPVHDPELFTSEQVQAFKKIGFKNKNYVPVGVRGVFGGVVQNMHMH 132

Query: 236 WKKHETVKVICKPCKPGQVHEYAEELARLSKGIVIDIKPNNSIILYRGKNYVQPKVMSPP 295
           WK HETV+V C      ++ E A  +ARLS G+VI+I    +II++RG+NY QPK + P 
Sbjct: 133 WKFHETVQVCCDNFPKEKIKEMASMIARLSGGVVINIHNVKTIIMFRGRNYRQPKNLIPV 192

Query: 296 DTLSKDKALEKYKYEQSLEHTSQFIEKLEKE 327
           +TL+K KAL K ++EQ+LE     I+K E++
Sbjct: 193 NTLTKRKALFKARFEQALESQKLNIKKTEQQ 220

[Close]
BLAST of Cla97C09G177310 vs. TAIR10
Match: AT3G01370.1 (CRM family member 2)

HSP 1 Score: 101.3 bits (251), Expect = 1.2e-21
Identity = 60/150 (40.00%), Postives = 89/150 (59.33%), Query Frame = 0 

Query: 160 VRIRYSLEKAKRKEAWLIEKLRKFEVPKSVIEKYDPEILTEEEKHYLKRTGEKKKNYVLL 219
           +++  +LEK    E  L + L   E P+  +   D E +T +EK+ L++ G K K ++LL
Sbjct: 544 MKLSMALEKKANAEKVLAD-LENRESPQ--LSDIDKEGITNDEKYMLRKIGLKMKPFLLL 603

Query: 220 GRRGVFGGVVLNMHLHWKKHETVKVICKPCKPGQVHEYAEELARLSKGIVIDIK---PNN 279
           GRRGVF G + NMHLHWK  E VK+IC        H+ AE L   S GI++ ++      
Sbjct: 604 GRRGVFDGTIENMHLHWKYRELVKIICNEYSIEAAHKVAEILEAESGGILVAVEMVSKGY 663

Query: 280 SIILYRGKNYVQPKVMSPPDTLSKDKALEK 307
           +II+YRGKNY +P+ + P   LSK +AL++
Sbjct: 664 AIIVYRGKNYERPQCLRPQTLLSKREALKR 690

The following BLAST results are available for this feature:
BLAST of Cla97C09G177310 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008455218.17.2e-14581.40PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplasti... [more]
XP_022141994.11.6e-14482.03uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Momordic... [more]
XP_011658783.17.0e-14079.48PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplasti... [more]
XP_022967603.14.0e-13578.26uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Cucurbit... [more]
XP_022963469.14.1e-13277.10uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Cucurbit... [more]
BLAST of Cla97C09G177310 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3C151|A0A1S3C151_CUCME4.8e-14581.40uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Cucumi... [more]
tr|A0A0A0K5Y2|A0A0A0K5Y2_CUCSA4.6e-14079.48Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G062730 PE=4 SV=1[more]
tr|A0A2I4GE50|A0A2I4GE50_9ROSI2.3e-10263.82uncharacterized CRM domain-containing protein At3g25440, chloroplastic isoform X... [more]
tr|A0A2P4HLP1|A0A2P4HLP1_QUESU7.2e-10162.84Putative crm domain-containing protein, chloroplastic OS=Quercus suber OX=58331 ... [more]
tr|A0A2P4HLL2|A0A2P4HLL2_QUESU7.2e-10162.84Putative crm domain-containing protein, chloroplastic OS=Quercus suber OX=58331 ... [more]
BLAST of Cla97C09G177310 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q67XL4|Y3544_ARATH1.6e-3945.07Uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Arabid... [more]
sp|Q8L7C2|CFM2_ARATH2.2e-2040.00CRM-domain containing factor CFM2, chloroplastic OS=Arabidopsis thaliana OX=3702... [more]
sp|F4J2U9|CFM3A_ARATH7.9e-1840.14CRM-domain containing factor CFM3A, chloroplastic/mitochondrial OS=Arabidopsis t... [more]
sp|Q6YYA3|CRS1_ORYSJ1.0e-1737.11Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic OS=Oryza... [more]
sp|Q2R1U8|CFM3_ORYSJ1.3e-1734.91CRM-domain containing factor CFM3, chloroplastic/mitochondrial OS=Oryza sativa s... [more]
BLAST of Cla97C09G177310 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G13070.16.2e-9868.91RNA-binding CRS1 / YhbY (CRM) domain protein[more]
AT2G28480.11.0e-5263.25RNA-binding CRS1 / YhbY (CRM) domain protein[more]
AT3G25440.19.1e-4145.07RNA-binding CRS1 / YhbY (CRM) domain protein[more]
AT3G27550.13.9e-3641.71RNA-binding CRS1 / YhbY (CRM) domain protein[more]
AT3G01370.11.2e-2140.00CRM family member 2[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR035920YhbY_like_sf
IPR001890RNA-binding_CRM
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003723 RNA binding
molecular_function GO:0043167 ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C09G177310.1Cla97C09G177310.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 313..340
NoneNo IPR availablePANTHERPTHR31426FAMILY NOT NAMEDcoord: 71..344
NoneNo IPR availablePANTHERPTHR31426:SF3SUBFAMILY NOT NAMEDcoord: 71..344
IPR001890RNA-binding, CRM domainSMARTSM01103CRS1_YhbY_2coord: 198..282
e-value: 1.0E-21
score: 88.1
IPR001890RNA-binding, CRM domainPFAMPF01985CRS1_YhbYcoord: 198..282
e-value: 2.8E-21
score: 75.4
IPR001890RNA-binding, CRM domainPROSITEPS51295CRMcoord: 196..293
score: 19.872
IPR035920YhbY-like superfamilyGENE3DG3DSA:3.30.110.60coord: 197..297
e-value: 9.1E-8
score: 33.8
IPR035920YhbY-like superfamilySUPERFAMILYSSF75471YhbY-likecoord: 197..292

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C09G177310Cla001845Watermelon (97103) v1wmwmbB048
Cla97C09G177310Csa7G062730Cucumber (Chinese Long) v2cuwmbB558
Cla97C09G177310MELO3C018653Melon (DHL92) v3.5.1mewmbB224
Cla97C09G177310ClCG09G015320Watermelon (Charleston Gray)wcgwmbB035
Cla97C09G177310CSPI07G05440Wild cucumber (PI 183967)cpiwmbB584
Cla97C09G177310Cucsa.217840Cucumber (Gy14) v1cgywmbB399
Cla97C09G177310CmaCh19G002610Cucurbita maxima (Rimu)cmawmbB552
Cla97C09G177310CmoCh19G002820Cucurbita moschata (Rifu)cmowmbB535
Cla97C09G177310Lsi03G007720Bottle gourd (USVL1VR-Ls)lsiwmbB251
Cla97C09G177310MELO3C018653.2Melon (DHL92) v3.6.1medwmbB209
Cla97C09G177310Carg24503Silver-seed gourdcarwmbB1024
Cla97C09G177310CsaV3_7G006390Cucumber (Chinese Long) v3cucwmbB581
Cla97C09G177310Bhi05G000689Wax gourdwgowmbB263
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C09G177310Cucurbita maxima (Rimu)cmawmbB149
Cla97C09G177310Cucurbita moschata (Rifu)cmowmbB136
Cla97C09G177310Cucumber (Gy14) v2cgybwmbB530