Cucsa.102930 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.102930
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionLate embryogenesis abundant protein, group 6
Locationscaffold00927 : 1848458 .. 1848933 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAAGCGGGAGGCCGATCAGTCGCAGGGACAAAACAAGGAGATCAGGAAAAGCGAAAGGGAAAAGGAGAGATCAGAGGAAATTCCGTTGGAGAGCAGTCCGTACGTGAATTATGAAGACTTGGAAGATTACAAAAATCAAGCCTACGGAACACAAGGCCATCTTCAGCCCAAGCCCGGCCGTGGCGGAGGCGGTGGCCCAACCGACGCCCCCACTCTCTCCGGCGACGCCGCCGCGACACGTCGGTGATTAACCGCCAAGGAGTACCCTGAGAAGACATTCGCTGGCGCTTTCTTTGGCCGTTCTGTTTTATTAAGGAATATTTGTTTTGCTGTAGGCTGAGTCTTGTTAATGTGTAACCTTACAATGGGTAAGGTAATGAATGAAAACAGTTGGAATAATCGGAATGGTATTATTAAAAAATTGATGACACTTACTAAATAATGAAGAGCAATATGTCGGTGTGCATTATA

mRNA sequence

ATGGAGAAGCGGGAGGCCGATCAGTCGCAGGGACAAAACAAGGAGATCAGGAAAAGCGAAAGGGAAAAGGAGAGATCAGAGGAAATTCCGTTGGAGAGCAGTCCGTACGTGAATTATGAAGACTTGGAAGATTACAAAAATCAAGCCTACGGAACACAAGGCCATCTTCAGCCCAAGCCCGGCCGTGGCGGAGGCGGTGGCCCAACCGACGCCCCCACTCTCTCCGGCGACGCCGCCGCGACACGTCGGTGATTAACCGCCAAGGAGTACCCTGAGAAGACATTCGCTGGCGCTTTCTTTGGCCGTTCTGTTTTATTAAGGAATATTTGTTTTGCTGTAGGCTGAGTCTTGTTAATGTGTAACCTTACAATGGGTAAGGTAATGAATGAAAACAGTTGGAATAATCGGAATGGTATTATTAAAAAATTGATGACACTTACTAAATAATGAAGAGCAATATGTCGGTGTGCATTATA

Coding sequence (CDS)

ATGGAGAAGCGGGAGGCCGATCAGTCGCAGGGACAAAACAAGGAGATCAGGAAAAGCGAAAGGGAAAAGGAGAGATCAGAGGAAATTCCGTTGGAGAGCAGTCCGTACGTGAATTATGAAGACTTGGAAGATTACAAAAATCAAGCCTACGGAACACAAGGCCATCTTCAGCCCAAGCCCGGCCGTGGCGGAGGCGGTGGCCCAACCGACGCCCCCACTCTCTCCGGCGACGCCGCCGCGACACGTCGGTGA

Protein sequence

MEKREADQSQGQNKEIRKSEREKERSEEIPLESSPYVNYEDLEDYKNQAYGTQGHLQPKPGRGGGGGPTDAPTLSGDAAATRR*
Homology
[Close]
BLAST of Cucsa.102930 vs. TrEMBL
Match: A0A0A0KGG1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G493910 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 1.6e-40
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 1 

Query: 1  MEKREADQSQGQNKEIRKSEREKERSEEIPLESSPYVNYEDLEDYKNQAYGTQGHLQPKP 60
          MEKREADQSQGQNKEIRKSEREKERSEEIPLESSPYVNYEDLEDYKNQAYGTQGHLQPKP
Sbjct: 1  MEKREADQSQGQNKEIRKSEREKERSEEIPLESSPYVNYEDLEDYKNQAYGTQGHLQPKP 60

Query: 61 GRGGGGGPTDAPTLSGDAAATRR 84
          GRGGGGGPTDAPTLSGDAAATRR
Sbjct: 61 GRGGGGGPTDAPTLSGDAAATRR 83

[Close]
BLAST of Cucsa.102930 vs. TrEMBL
Match: V4SFD8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026786mg PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.1e-17
Identity = 44/81 (54.32%), Postives = 60/81 (74.07%), Query Frame = 1 

Query: 1   MEKREADQSQGQNKEIRKSEREKERSEEIPLESSPYVNYEDLEDYKNQAYGTQGHLQPKP 60
           MEK++  +++ +  E  +S  EK+  E +P++ SPYV Y+DLEDYK Q YGT+GHL+P+ 
Sbjct: 23  MEKKQEQETERKKSETERSTEEKKSLEGLPMKDSPYVKYKDLEDYKRQGYGTEGHLKPQT 82

Query: 61  GRGGGGGPTDAPTLSGDAAAT 82
           GRGGG   TDAPTLSGDA A+
Sbjct: 83  GRGGGA--TDAPTLSGDAVAS 101

[Close]
BLAST of Cucsa.102930 vs. TrEMBL
Match: A0A0J8CCV2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g127730 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.8e-15
Identity = 46/79 (58.23%), Postives = 58/79 (73.42%), Query Frame = 1 

Query: 12 QNKEIRKSEREKERSEE------IPLESSPYVNYEDLEDYKNQAYGTQGHLQPKPGRGGG 71
          +N   ++SE EK++SEE      +P+E+SPYV Y+DLEDYK Q YGTQGH++PKPGRG G
Sbjct: 3  KNSNNQQSENEKKQSEEAKKLEGLPIETSPYVQYKDLEDYKQQGYGTQGHMEPKPGRGAG 62

Query: 72 GGPTDAPTLSG---DAAAT 82
          G  TDAPT SG   D +AT
Sbjct: 63 G--TDAPTPSGGVSDGSAT 79

[Close]
BLAST of Cucsa.102930 vs. TrEMBL
Match: A0A067K721_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12502 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 6.8e-15
Identity = 41/65 (63.08%), Postives = 50/65 (76.92%), Query Frame = 1 

Query: 12 QNKEIRKSEREKERSEEIPLESSPYVNYEDLEDYKNQAYGTQGHLQPKPGRGGGGGPTDA 71
          Q  E R+ + +KE+ E +P+E SPY+ Y+DLEDYK + YGTQGHLQPKPGRG G   TDA
Sbjct: 4  QATESREEQEKKEKLEGLPVEDSPYLQYKDLEDYKLKGYGTQGHLQPKPGRGAGA--TDA 63

Query: 72 PTLSG 77
          PTLSG
Sbjct: 64 PTLSG 66

[Close]
BLAST of Cucsa.102930 vs. TrEMBL
Match: F6I6V2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0122g00820 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 8.9e-15
Identity = 41/70 (58.57%), Postives = 53/70 (75.71%), Query Frame = 1 

Query: 14 KEIRKSEREKERSEE-------IPLESSPYVNYEDLEDYKNQAYGTQGHLQPKPGRGGGG 73
          +++RK   E+ER+EE       +P+ESSPY+ Y DLEDYK Q YGT+GHL+PKP +GGGG
Sbjct: 6  EQLRKKTEEEERAEEKASKLRGLPMESSPYLKYTDLEDYKRQGYGTEGHLEPKPNQGGGG 65

Query: 74 GPTDAPTLSG 77
            TDAPTL+G
Sbjct: 66 --TDAPTLAG 73

[Close]
BLAST of Cucsa.102930 vs. TAIR10
Match: AT2G33690.1 (AT2G33690.1 Late embryogenesis abundant protein, group 6)

HSP 1 Score: 79.7 bits (195), Expect = 9.4e-16
Identity = 37/58 (63.79%), Postives = 42/58 (72.41%), Query Frame = 1 

Query: 22 EKERSEEIPLESSPYVNYEDLEDYKNQAYGTQGHLQPKPGRGGGGGPTDAPTLSGDAA 80
          + E  +E+PLE+SPY  YED+EDYK  AYGT GH   KPG   GGG TDAPT SGDAA
Sbjct: 3  KSEEKQELPLETSPYTKYEDIEDYKKNAYGTSGHQDVKPGH--GGGTTDAPTPSGDAA 58

[Close]
BLAST of Cucsa.102930 vs. TAIR10
Match: AT2G23120.1 (AT2G23120.1 Late embryogenesis abundant protein, group 6)

HSP 1 Score: 61.6 bits (148), Expect = 2.6e-10
Identity = 33/76 (43.42%), Postives = 46/76 (60.53%), Query Frame = 1 

Query: 5  EADQSQGQNKEIRKSEREKERSEEIPLESSPYVNYEDLEDYKNQAYGTQGHLQPKPGRGG 64
          EA ++        + + E+ +  ++P +S PY+    LEDYK +AYG +GH +P PG GG
Sbjct: 2  EAGKTPPTTTTTTEKKTEQVKDNDLPTDS-PYMATGTLEDYKLKAYGAEGHQEPTPGLGG 61

Query: 65 GGGPTDAPTLSGDAAA 81
          G   TDAPT SGDA A
Sbjct: 62 GS--TDAPTPSGDAPA 74

[Close]
BLAST of Cucsa.102930 vs. TAIR10
Match: AT2G23110.1 (AT2G23110.1 Late embryogenesis abundant protein, group 6)

HSP 1 Score: 60.1 bits (144), Expect = 7.7e-10
Identity = 27/59 (45.76%), Postives = 42/59 (71.19%), Query Frame = 1 

Query: 18 KSEREKERSEEIPLESSPYVNYEDLEDYKNQAYGTQGHLQPKPGRGGGGGPTDAPTLSG 77
          + E ++ +++++    +PY++Y++LEDYK + YG QGH +PK G GGG   TDAPT SG
Sbjct: 11 EQEVKEVKNDDLESIKTPYLDYDNLEDYKMKGYGAQGHQEPKLGMGGGA--TDAPTPSG 67

[Close]
BLAST of Cucsa.102930 vs. NCBI nr
Match: gi|778718556|ref|XP_011657884.1| (PREDICTED: uncharacterized protein LOC105435909 [Cucumis sativus])

HSP 1 Score: 172.9 bits (437), Expect = 2.3e-40
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 1 

Query: 1  MEKREADQSQGQNKEIRKSEREKERSEEIPLESSPYVNYEDLEDYKNQAYGTQGHLQPKP 60
          MEKREADQSQGQNKEIRKSEREKERSEEIPLESSPYVNYEDLEDYKNQAYGTQGHLQPKP
Sbjct: 1  MEKREADQSQGQNKEIRKSEREKERSEEIPLESSPYVNYEDLEDYKNQAYGTQGHLQPKP 60

Query: 61 GRGGGGGPTDAPTLSGDAAATRR 84
          GRGGGGGPTDAPTLSGDAAATRR
Sbjct: 61 GRGGGGGPTDAPTLSGDAAATRR 83

[Close]
BLAST of Cucsa.102930 vs. NCBI nr
Match: gi|567866839|ref|XP_006426042.1| (hypothetical protein CICLE_v10026786mg [Citrus clementina])

HSP 1 Score: 97.1 bits (240), Expect = 1.6e-17
Identity = 44/81 (54.32%), Postives = 60/81 (74.07%), Query Frame = 1 

Query: 1   MEKREADQSQGQNKEIRKSEREKERSEEIPLESSPYVNYEDLEDYKNQAYGTQGHLQPKP 60
           MEK++  +++ +  E  +S  EK+  E +P++ SPYV Y+DLEDYK Q YGT+GHL+P+ 
Sbjct: 23  MEKKQEQETERKKSETERSTEEKKSLEGLPMKDSPYVKYKDLEDYKRQGYGTEGHLKPQT 82

Query: 61  GRGGGGGPTDAPTLSGDAAAT 82
           GRGGG   TDAPTLSGDA A+
Sbjct: 83  GRGGGA--TDAPTLSGDAVAS 101

[Close]
BLAST of Cucsa.102930 vs. NCBI nr
Match: gi|568824226|ref|XP_006466503.1| (PREDICTED: uncharacterized protein LOC102616141 [Citrus sinensis])

HSP 1 Score: 96.3 bits (238), Expect = 2.7e-17
Identity = 44/81 (54.32%), Postives = 60/81 (74.07%), Query Frame = 1 

Query: 1  MEKREADQSQGQNKEIRKSEREKERSEEIPLESSPYVNYEDLEDYKNQAYGTQGHLQPKP 60
          MEK++  +++ +  E  +S  EK+  E +P++ SPYV Y+DLEDYK Q YGT+GHL+P+ 
Sbjct: 1  MEKKQEQETERKASETERSTEEKKSLEGLPMKDSPYVKYKDLEDYKRQGYGTEGHLKPQT 60

Query: 61 GRGGGGGPTDAPTLSGDAAAT 82
          GRGGG   TDAPTLSGDA A+
Sbjct: 61 GRGGGA--TDAPTLSGDAVAS 79

[Close]
BLAST of Cucsa.102930 vs. NCBI nr
Match: gi|720068635|ref|XP_010277173.1| (PREDICTED: uncharacterized protein LOC104611696 [Nelumbo nucifera])

HSP 1 Score: 90.9 bits (224), Expect = 1.2e-15
Identity = 45/81 (55.56%), Postives = 59/81 (72.84%), Query Frame = 1 

Query: 9  SQGQNKEIRKSE---REKERS---EEIPLESSPYVNYEDLEDYKNQAYGTQGHLQPKPGR 68
          S+ + + +RK+E    EK++S   EE+P+ESSPYVNY DLEDYK + YGT+GH +PKPGR
Sbjct: 2  SRSEEQTVRKTESAEEEKDKSPGGEELPVESSPYVNYSDLEDYKRRGYGTEGHQEPKPGR 61

Query: 69 GGGGGPTDAPTLSGDAAATRR 84
          G G   TDAPTLSG   + R+
Sbjct: 62 GAGA--TDAPTLSGSGLSERK 80

[Close]
BLAST of Cucsa.102930 vs. NCBI nr
Match: gi|731337043|ref|XP_010679579.1| (PREDICTED: uncharacterized protein LOC104894915 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 89.7 bits (221), Expect = 2.6e-15
Identity = 46/79 (58.23%), Postives = 58/79 (73.42%), Query Frame = 1 

Query: 12 QNKEIRKSEREKERSEE------IPLESSPYVNYEDLEDYKNQAYGTQGHLQPKPGRGGG 71
          +N   ++SE EK++SEE      +P+E+SPYV Y+DLEDYK Q YGTQGH++PKPGRG G
Sbjct: 3  KNSNNQQSENEKKQSEEAKKLEGLPIETSPYVQYKDLEDYKQQGYGTQGHMEPKPGRGAG 62

Query: 72 GGPTDAPTLSG---DAAAT 82
          G  TDAPT SG   D +AT
Sbjct: 63 G--TDAPTPSGGVSDGSAT 79

The following BLAST results are available for this feature:
BLAST of Cucsa.102930 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KGG1_CUCSA1.6e-40100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G493910 PE=4 SV=1[more]
V4SFD8_9ROSI1.1e-1754.32Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026786mg PE=4 SV=1[more]
A0A0J8CCV2_BETVU1.8e-1558.23Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g127730 PE=4 S... [more]
A0A067K721_JATCU6.8e-1563.08Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12502 PE=4 SV=1[more]
F6I6V2_VITVI8.9e-1558.57Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0122g00820 PE=4 SV=... [more]
BLAST of Cucsa.102930 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G33690.19.4e-1663.79 Late embryogenesis abundant protein, group 6[more]
AT2G23120.12.6e-1043.42 Late embryogenesis abundant protein, group 6[more]
AT2G23110.17.7e-1045.76 Late embryogenesis abundant protein, group 6[more]
BLAST of Cucsa.102930 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778718556|ref|XP_011657884.1|2.3e-40100.00PREDICTED: uncharacterized protein LOC105435909 [Cucumis sativus][more]
gi|567866839|ref|XP_006426042.1|1.6e-1754.32hypothetical protein CICLE_v10026786mg [Citrus clementina][more]
gi|568824226|ref|XP_006466503.1|2.7e-1754.32PREDICTED: uncharacterized protein LOC102616141 [Citrus sinensis][more]
gi|720068635|ref|XP_010277173.1|1.2e-1555.56PREDICTED: uncharacterized protein LOC104611696 [Nelumbo nucifera][more]
gi|731337043|ref|XP_010679579.1|2.6e-1558.23PREDICTED: uncharacterized protein LOC104894915 [Beta vulgaris subsp. vulgaris][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR018930LEA-18
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.102930.1Cucsa.102930.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018930Late embryogenesis abundant protein, LEA-18PFAMPF10714LEA_6coord: 23..81
score: 2.6
NoneNo IPR availableunknownCoilCoilcoord: 9..29
scor
NoneNo IPR availablePANTHERPTHR33922FAMILY NOT NAMEDcoord: 1..78
score: 5.7
NoneNo IPR availablePANTHERPTHR33922:SF4EXPRESSED PROTEINcoord: 1..78
score: 5.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.102930Cla014004Watermelon (97103) v1cgywmB136
Cucsa.102930Csa6G493910Cucumber (Chinese Long) v2cgycuB121
Cucsa.102930MELO3C007608Melon (DHL92) v3.5.1cgymeB131
Cucsa.102930ClCG01G017300Watermelon (Charleston Gray)cgywcgB134
Cucsa.102930CSPI06G28650Wild cucumber (PI 183967)cgycpiB122
Cucsa.102930CmaCh07G006670Cucurbita maxima (Rimu)cgycmaB0235
Cucsa.102930CmoCh07G006780Cucurbita moschata (Rifu)cgycmoB0233
Cucsa.102930Lsi01G009230Bottle gourd (USVL1VR-Ls)cgylsiB125
Cucsa.102930Cp4.1LG19g10790Cucurbita pepo (Zucchini)cgycpeB0220
Cucsa.102930MELO3C007608.2Melon (DHL92) v3.6.1cgymedB131
Cucsa.102930CsaV3_6G043830Cucumber (Chinese Long) v3cgycucB126
Cucsa.102930Cla97C01G016480Watermelon (97103) v2cgywmbB127
Cucsa.102930Carg18567Silver-seed gourdcarcgyB0001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.102930Melon (DHL92) v3.6.1cgymedB125
Cucsa.102930Silver-seed gourdcarcgyB0219
Cucsa.102930Silver-seed gourdcarcgyB0433
Cucsa.102930Silver-seed gourdcarcgyB0467
Cucsa.102930Cucumber (Chinese Long) v3cgycucB117
Cucsa.102930Watermelon (97103) v2cgywmbB133
Cucsa.102930Wax gourdcgywgoB146
Cucsa.102930Wax gourdcgywgoB151
Cucsa.102930Cucumber (Gy14) v1cgycgyB052
Cucsa.102930Cucurbita maxima (Rimu)cgycmaB0228
Cucsa.102930Cucurbita maxima (Rimu)cgycmaB0226
Cucsa.102930Cucurbita maxima (Rimu)cgycmaB0224
Cucsa.102930Cucurbita maxima (Rimu)cgycmaB0231
Cucsa.102930Cucurbita maxima (Rimu)cgycmaB0232
Cucsa.102930Cucurbita maxima (Rimu)cgycmaB0234
Cucsa.102930Cucurbita moschata (Rifu)cgycmoB0215
Cucsa.102930Cucurbita moschata (Rifu)cgycmoB0219
Cucsa.102930Cucurbita moschata (Rifu)cgycmoB0222
Cucsa.102930Cucurbita moschata (Rifu)cgycmoB0224
Cucsa.102930Cucurbita moschata (Rifu)cgycmoB0227
Cucsa.102930Cucurbita moschata (Rifu)cgycmoB0228
Cucsa.102930Cucurbita moschata (Rifu)cgycmoB0231
Cucsa.102930Wild cucumber (PI 183967)cgycpiB115
Cucsa.102930Wild cucumber (PI 183967)cgycpiB121
Cucsa.102930Cucumber (Chinese Long) v2cgycuB113
Cucsa.102930Cucumber (Chinese Long) v2cgycuB120
Cucsa.102930Melon (DHL92) v3.5.1cgymeB126
Cucsa.102930Melon (DHL92) v3.5.1cgymeB130
Cucsa.102930Watermelon (Charleston Gray)cgywcgB137
Cucsa.102930Watermelon (Charleston Gray)cgywcgB138
Cucsa.102930Watermelon (97103) v1cgywmB132
Cucsa.102930Cucurbita pepo (Zucchini)cgycpeB0211
Cucsa.102930Cucurbita pepo (Zucchini)cgycpeB0215
Cucsa.102930Cucurbita pepo (Zucchini)cgycpeB0218
Cucsa.102930Cucurbita pepo (Zucchini)cgycpeB0223
Cucsa.102930Cucurbita pepo (Zucchini)cgycpeB0227
Cucsa.102930Bottle gourd (USVL1VR-Ls)cgylsiB129