Cucsa.102930 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.102930
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Late embryogenesis abundant protein, group 6
Location	scaffold00927 : 1848458 .. 1848933 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAGCGGGAGGCCGATCAGTCGCAGGGACAAAACAAGGAGATCAGGAAAAGCGAAAGGGAAAAGGAGAGATCAGAGGAAATTCCGTTGGAGAGCAGTCCGTACGTGAATTATGAAGACTTGGAAGATTACAAAAATCAAGCCTACGGAACACAAGGCCATCTTCAGCCCAAGCCCGGCCGTGGCGGAGGCGGTGGCCCAACCGACGCCCCCACTCTCTCCGGCGACGCCGCCGCGACACGTCGGTGATTAACCGCCAAGGAGTACCCTGAGAAGACATTCGCTGGCGCTTTCTTTGGCCGTTCTGTTTTATTAAGGAATATTTGTTTTGCTGTAGGCTGAGTCTTGTTAATGTGTAACCTTACAATGGGTAAGGTAATGAATGAAAACAGTTGGAATAATCGGAATGGTATTATTAAAAAATTGATGACACTTACTAAATAATGAAGAGCAATATGTCGGTGTGCATTATA

mRNA sequence

ATGGAGAAGCGGGAGGCCGATCAGTCGCAGGGACAAAACAAGGAGATCAGGAAAAGCGAAAGGGAAAAGGAGAGATCAGAGGAAATTCCGTTGGAGAGCAGTCCGTACGTGAATTATGAAGACTTGGAAGATTACAAAAATCAAGCCTACGGAACACAAGGCCATCTTCAGCCCAAGCCCGGCCGTGGCGGAGGCGGTGGCCCAACCGACGCCCCCACTCTCTCCGGCGACGCCGCCGCGACACGTCGGTGATTAACCGCCAAGGAGTACCCTGAGAAGACATTCGCTGGCGCTTTCTTTGGCCGTTCTGTTTTATTAAGGAATATTTGTTTTGCTGTAGGCTGAGTCTTGTTAATGTGTAACCTTACAATGGGTAAGGTAATGAATGAAAACAGTTGGAATAATCGGAATGGTATTATTAAAAAATTGATGACACTTACTAAATAATGAAGAGCAATATGTCGGTGTGCATTATA

Coding sequence (CDS)

ATGGAGAAGCGGGAGGCCGATCAGTCGCAGGGACAAAACAAGGAGATCAGGAAAAGCGAAAGGGAAAAGGAGAGATCAGAGGAAATTCCGTTGGAGAGCAGTCCGTACGTGAATTATGAAGACTTGGAAGATTACAAAAATCAAGCCTACGGAACACAAGGCCATCTTCAGCCCAAGCCCGGCCGTGGCGGAGGCGGTGGCCCAACCGACGCCCCCACTCTCTCCGGCGACGCCGCCGCGACACGTCGGTGA

Protein sequence

MEKREADQSQGQNKEIRKSEREKERSEEIPLESSPYVNYEDLEDYKNQAYGTQGHLQPKPGRGGGGGPTDAPTLSGDAAATRR*

Homology

[Close]

BLAST of Cucsa.102930 vs. TrEMBL
Match: A0A0A0KGG1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G493910 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 1.6e-40
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 1


Query: 1  MEKREADQSQGQNKEIRKSEREKERSEEIPLESSPYVNYEDLEDYKNQAYGTQGHLQPKP 60
          MEKREADQSQGQNKEIRKSEREKERSEEIPLESSPYVNYEDLEDYKNQAYGTQGHLQPKP
Sbjct: 1  MEKREADQSQGQNKEIRKSEREKERSEEIPLESSPYVNYEDLEDYKNQAYGTQGHLQPKP 60

Query: 61 GRGGGGGPTDAPTLSGDAAATRR 84
          GRGGGGGPTDAPTLSGDAAATRR
Sbjct: 61 GRGGGGGPTDAPTLSGDAAATRR 83

[Close]

BLAST of Cucsa.102930 vs. TrEMBL
Match: V4SFD8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026786mg PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.1e-17
Identity = 44/81 (54.32%), Postives = 60/81 (74.07%), Query Frame = 1


Query: 1   MEKREADQSQGQNKEIRKSEREKERSEEIPLESSPYVNYEDLEDYKNQAYGTQGHLQPKP 60
           MEK++  +++ +  E  +S  EK+  E +P++ SPYV Y+DLEDYK Q YGT+GHL+P+ 
Sbjct: 23  MEKKQEQETERKKSETERSTEEKKSLEGLPMKDSPYVKYKDLEDYKRQGYGTEGHLKPQT 82

Query: 61  GRGGGGGPTDAPTLSGDAAAT 82
           GRGGG   TDAPTLSGDA A+
Sbjct: 83  GRGGGA--TDAPTLSGDAVAS 101

[Close]

BLAST of Cucsa.102930 vs. TrEMBL
Match: A0A0J8CCV2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g127730 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.8e-15
Identity = 46/79 (58.23%), Postives = 58/79 (73.42%), Query Frame = 1


Query: 12 QNKEIRKSEREKERSEE------IPLESSPYVNYEDLEDYKNQAYGTQGHLQPKPGRGGG 71
          +N   ++SE EK++SEE      +P+E+SPYV Y+DLEDYK Q YGTQGH++PKPGRG G
Sbjct: 3  KNSNNQQSENEKKQSEEAKKLEGLPIETSPYVQYKDLEDYKQQGYGTQGHMEPKPGRGAG 62

Query: 72 GGPTDAPTLSG---DAAAT 82
          G  TDAPT SG   D +AT
Sbjct: 63 G--TDAPTPSGGVSDGSAT 79

[Close]

BLAST of Cucsa.102930 vs. TrEMBL
Match: A0A067K721_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12502 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 6.8e-15
Identity = 41/65 (63.08%), Postives = 50/65 (76.92%), Query Frame = 1


Query: 12 QNKEIRKSEREKERSEEIPLESSPYVNYEDLEDYKNQAYGTQGHLQPKPGRGGGGGPTDA 71
          Q  E R+ + +KE+ E +P+E SPY+ Y+DLEDYK + YGTQGHLQPKPGRG G   TDA
Sbjct: 4  QATESREEQEKKEKLEGLPVEDSPYLQYKDLEDYKLKGYGTQGHLQPKPGRGAGA--TDA 63

Query: 72 PTLSG 77
          PTLSG
Sbjct: 64 PTLSG 66

[Close]

BLAST of Cucsa.102930 vs. TrEMBL
Match: F6I6V2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0122g00820 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 8.9e-15
Identity = 41/70 (58.57%), Postives = 53/70 (75.71%), Query Frame = 1


Query: 14 KEIRKSEREKERSEE-------IPLESSPYVNYEDLEDYKNQAYGTQGHLQPKPGRGGGG 73
          +++RK   E+ER+EE       +P+ESSPY+ Y DLEDYK Q YGT+GHL+PKP +GGGG
Sbjct: 6  EQLRKKTEEEERAEEKASKLRGLPMESSPYLKYTDLEDYKRQGYGTEGHLEPKPNQGGGG 65

Query: 74 GPTDAPTLSG 77
            TDAPTL+G
Sbjct: 66 --TDAPTLAG 73

[Close]

BLAST of Cucsa.102930 vs. TAIR10
Match: AT2G33690.1 (AT2G33690.1 Late embryogenesis abundant protein, group 6)

HSP 1 Score: 79.7 bits (195), Expect = 9.4e-16
Identity = 37/58 (63.79%), Postives = 42/58 (72.41%), Query Frame = 1


Query: 22 EKERSEEIPLESSPYVNYEDLEDYKNQAYGTQGHLQPKPGRGGGGGPTDAPTLSGDAA 80
          + E  +E+PLE+SPY  YED+EDYK  AYGT GH   KPG   GGG TDAPT SGDAA
Sbjct: 3  KSEEKQELPLETSPYTKYEDIEDYKKNAYGTSGHQDVKPGH--GGGTTDAPTPSGDAA 58

[Close]

BLAST of Cucsa.102930 vs. TAIR10
Match: AT2G23120.1 (AT2G23120.1 Late embryogenesis abundant protein, group 6)

HSP 1 Score: 61.6 bits (148), Expect = 2.6e-10
Identity = 33/76 (43.42%), Postives = 46/76 (60.53%), Query Frame = 1


Query: 5  EADQSQGQNKEIRKSEREKERSEEIPLESSPYVNYEDLEDYKNQAYGTQGHLQPKPGRGG 64
          EA ++        + + E+ +  ++P +S PY+    LEDYK +AYG +GH +P PG GG
Sbjct: 2  EAGKTPPTTTTTTEKKTEQVKDNDLPTDS-PYMATGTLEDYKLKAYGAEGHQEPTPGLGG 61

Query: 65 GGGPTDAPTLSGDAAA 81
          G   TDAPT SGDA A
Sbjct: 62 GS--TDAPTPSGDAPA 74

[Close]

BLAST of Cucsa.102930 vs. TAIR10
Match: AT2G23110.1 (AT2G23110.1 Late embryogenesis abundant protein, group 6)

HSP 1 Score: 60.1 bits (144), Expect = 7.7e-10
Identity = 27/59 (45.76%), Postives = 42/59 (71.19%), Query Frame = 1


Query: 18 KSEREKERSEEIPLESSPYVNYEDLEDYKNQAYGTQGHLQPKPGRGGGGGPTDAPTLSG 77
          + E ++ +++++    +PY++Y++LEDYK + YG QGH +PK G GGG   TDAPT SG
Sbjct: 11 EQEVKEVKNDDLESIKTPYLDYDNLEDYKMKGYGAQGHQEPKLGMGGGA--TDAPTPSG 67

[Close]

BLAST of Cucsa.102930 vs. NCBI nr
Match: gi|778718556|ref|XP_011657884.1| (PREDICTED: uncharacterized protein LOC105435909 [Cucumis sativus])

HSP 1 Score: 172.9 bits (437), Expect = 2.3e-40
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 1


Query: 1  MEKREADQSQGQNKEIRKSEREKERSEEIPLESSPYVNYEDLEDYKNQAYGTQGHLQPKP 60
          MEKREADQSQGQNKEIRKSEREKERSEEIPLESSPYVNYEDLEDYKNQAYGTQGHLQPKP
Sbjct: 1  MEKREADQSQGQNKEIRKSEREKERSEEIPLESSPYVNYEDLEDYKNQAYGTQGHLQPKP 60

Query: 61 GRGGGGGPTDAPTLSGDAAATRR 84
          GRGGGGGPTDAPTLSGDAAATRR
Sbjct: 61 GRGGGGGPTDAPTLSGDAAATRR 83

[Close]

BLAST of Cucsa.102930 vs. NCBI nr
Match: gi|567866839|ref|XP_006426042.1| (hypothetical protein CICLE_v10026786mg [Citrus clementina])

HSP 1 Score: 97.1 bits (240), Expect = 1.6e-17
Identity = 44/81 (54.32%), Postives = 60/81 (74.07%), Query Frame = 1


Query: 1   MEKREADQSQGQNKEIRKSEREKERSEEIPLESSPYVNYEDLEDYKNQAYGTQGHLQPKP 60
           MEK++  +++ +  E  +S  EK+  E +P++ SPYV Y+DLEDYK Q YGT+GHL+P+ 
Sbjct: 23  MEKKQEQETERKKSETERSTEEKKSLEGLPMKDSPYVKYKDLEDYKRQGYGTEGHLKPQT 82

Query: 61  GRGGGGGPTDAPTLSGDAAAT 82
           GRGGG   TDAPTLSGDA A+
Sbjct: 83  GRGGGA--TDAPTLSGDAVAS 101

[Close]

BLAST of Cucsa.102930 vs. NCBI nr
Match: gi|568824226|ref|XP_006466503.1| (PREDICTED: uncharacterized protein LOC102616141 [Citrus sinensis])

HSP 1 Score: 96.3 bits (238), Expect = 2.7e-17
Identity = 44/81 (54.32%), Postives = 60/81 (74.07%), Query Frame = 1


Query: 1  MEKREADQSQGQNKEIRKSEREKERSEEIPLESSPYVNYEDLEDYKNQAYGTQGHLQPKP 60
          MEK++  +++ +  E  +S  EK+  E +P++ SPYV Y+DLEDYK Q YGT+GHL+P+ 
Sbjct: 1  MEKKQEQETERKASETERSTEEKKSLEGLPMKDSPYVKYKDLEDYKRQGYGTEGHLKPQT 60

Query: 61 GRGGGGGPTDAPTLSGDAAAT 82
          GRGGG   TDAPTLSGDA A+
Sbjct: 61 GRGGGA--TDAPTLSGDAVAS 79

[Close]

BLAST of Cucsa.102930 vs. NCBI nr
Match: gi|720068635|ref|XP_010277173.1| (PREDICTED: uncharacterized protein LOC104611696 [Nelumbo nucifera])

HSP 1 Score: 90.9 bits (224), Expect = 1.2e-15
Identity = 45/81 (55.56%), Postives = 59/81 (72.84%), Query Frame = 1


Query: 9  SQGQNKEIRKSE---REKERS---EEIPLESSPYVNYEDLEDYKNQAYGTQGHLQPKPGR 68
          S+ + + +RK+E    EK++S   EE+P+ESSPYVNY DLEDYK + YGT+GH +PKPGR
Sbjct: 2  SRSEEQTVRKTESAEEEKDKSPGGEELPVESSPYVNYSDLEDYKRRGYGTEGHQEPKPGR 61

Query: 69 GGGGGPTDAPTLSGDAAATRR 84
          G G   TDAPTLSG   + R+
Sbjct: 62 GAGA--TDAPTLSGSGLSERK 80

[Close]

BLAST of Cucsa.102930 vs. NCBI nr
Match: gi|731337043|ref|XP_010679579.1| (PREDICTED: uncharacterized protein LOC104894915 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 89.7 bits (221), Expect = 2.6e-15
Identity = 46/79 (58.23%), Postives = 58/79 (73.42%), Query Frame = 1


Query: 12 QNKEIRKSEREKERSEE------IPLESSPYVNYEDLEDYKNQAYGTQGHLQPKPGRGGG 71
          +N   ++SE EK++SEE      +P+E+SPYV Y+DLEDYK Q YGTQGH++PKPGRG G
Sbjct: 3  KNSNNQQSENEKKQSEEAKKLEGLPIETSPYVQYKDLEDYKQQGYGTQGHMEPKPGRGAG 62

Query: 72 GGPTDAPTLSG---DAAAT 82
          G  TDAPT SG   D +AT
Sbjct: 63 G--TDAPTPSGGVSDGSAT 79

The following BLAST results are available for this feature:

BLAST of Cucsa.102930 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KGG1_CUCSA	1.6e-40	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G493910 PE=4 SV=1	[more]
V4SFD8_9ROSI	1.1e-17	54.32	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026786mg PE=4 SV=1	[more]
A0A0J8CCV2_BETVU	1.8e-15	58.23	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g127730 PE=4 S...	[more]
A0A067K721_JATCU	6.8e-15	63.08	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12502 PE=4 SV=1	[more]
F6I6V2_VITVI	8.9e-15	58.57	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0122g00820 PE=4 SV=...	[more]

BLAST of Cucsa.102930 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G33690.1	9.4e-16	63.79	Late embryogenesis abundant protein, group 6	[more]
AT2G23120.1	2.6e-10	43.42	Late embryogenesis abundant protein, group 6	[more]
AT2G23110.1	7.7e-10	45.76	Late embryogenesis abundant protein, group 6	[more]

BLAST of Cucsa.102930 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778718556\|ref\|XP_011657884.1\|	2.3e-40	100.00	PREDICTED: uncharacterized protein LOC105435909 [Cucumis sativus]	[more]
gi\|567866839\|ref\|XP_006426042.1\|	1.6e-17	54.32	hypothetical protein CICLE_v10026786mg [Citrus clementina]	[more]
gi\|568824226\|ref\|XP_006466503.1\|	2.7e-17	54.32	PREDICTED: uncharacterized protein LOC102616141 [Citrus sinensis]	[more]
gi\|720068635\|ref\|XP_010277173.1\|	1.2e-15	55.56	PREDICTED: uncharacterized protein LOC104611696 [Nelumbo nucifera]	[more]
gi\|731337043\|ref\|XP_010679579.1\|	2.6e-15	58.23	PREDICTED: uncharacterized protein LOC104894915 [Beta vulgaris subsp. vulgaris]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR018930	LEA-18

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.102930.1	Cucsa.102930.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018930	Late embryogenesis abundant protein, LEA-18	PFAM	PF10714	LEA_6	coord: 23..81 score: 2.6
None	No IPR available	unknown	Coil	Coil	coord: 9..29 scor
None	No IPR available	PANTHER	PTHR33922	FAMILY NOT NAMED	coord: 1..78 score: 5.7
None	No IPR available	PANTHER	PTHR33922:SF4	EXPRESSED PROTEIN	coord: 1..78 score: 5.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.102930	Cla014004	Watermelon (97103) v1	cgywmB136
Cucsa.102930	Csa6G493910	Cucumber (Chinese Long) v2	cgycuB121
Cucsa.102930	MELO3C007608	Melon (DHL92) v3.5.1	cgymeB131
Cucsa.102930	ClCG01G017300	Watermelon (Charleston Gray)	cgywcgB134
Cucsa.102930	CSPI06G28650	Wild cucumber (PI 183967)	cgycpiB122
Cucsa.102930	CmaCh07G006670	Cucurbita maxima (Rimu)	cgycmaB0235
Cucsa.102930	CmoCh07G006780	Cucurbita moschata (Rifu)	cgycmoB0233
Cucsa.102930	Lsi01G009230	Bottle gourd (USVL1VR-Ls)	cgylsiB125
Cucsa.102930	Cp4.1LG19g10790	Cucurbita pepo (Zucchini)	cgycpeB0220
Cucsa.102930	MELO3C007608.2	Melon (DHL92) v3.6.1	cgymedB131
Cucsa.102930	CsaV3_6G043830	Cucumber (Chinese Long) v3	cgycucB126
Cucsa.102930	Cla97C01G016480	Watermelon (97103) v2	cgywmbB127
Cucsa.102930	Carg18567	Silver-seed gourd	carcgyB0001

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.102930	Silver-seed gourd	carcgyB0219
Cucsa.102930	Silver-seed gourd	carcgyB0433
Cucsa.102930	Silver-seed gourd	carcgyB0467
Cucsa.102930	Cucumber (Chinese Long) v3	cgycucB117
Cucsa.102930	Watermelon (97103) v2	cgywmbB133
Cucsa.102930	Wax gourd	cgywgoB146
Cucsa.102930	Wax gourd	cgywgoB151
Cucsa.102930	Cucumber (Gy14) v1	cgycgyB052
Cucsa.102930	Cucurbita maxima (Rimu)	cgycmaB0228
Cucsa.102930	Cucurbita maxima (Rimu)	cgycmaB0226
Cucsa.102930	Cucurbita maxima (Rimu)	cgycmaB0224
Cucsa.102930	Cucurbita maxima (Rimu)	cgycmaB0231
Cucsa.102930	Cucurbita maxima (Rimu)	cgycmaB0232
Cucsa.102930	Cucurbita maxima (Rimu)	cgycmaB0234
Cucsa.102930	Cucurbita moschata (Rifu)	cgycmoB0215
Cucsa.102930	Cucurbita moschata (Rifu)	cgycmoB0219
Cucsa.102930	Cucurbita moschata (Rifu)	cgycmoB0222
Cucsa.102930	Cucurbita moschata (Rifu)	cgycmoB0224
Cucsa.102930	Cucurbita moschata (Rifu)	cgycmoB0227
Cucsa.102930	Cucurbita moschata (Rifu)	cgycmoB0228
Cucsa.102930	Cucurbita moschata (Rifu)	cgycmoB0231
Cucsa.102930	Wild cucumber (PI 183967)	cgycpiB115
Cucsa.102930	Wild cucumber (PI 183967)	cgycpiB121
Cucsa.102930	Cucumber (Chinese Long) v2	cgycuB113
Cucsa.102930	Cucumber (Chinese Long) v2	cgycuB120
Cucsa.102930	Melon (DHL92) v3.5.1	cgymeB126
Cucsa.102930	Melon (DHL92) v3.5.1	cgymeB130
Cucsa.102930	Watermelon (Charleston Gray)	cgywcgB137
Cucsa.102930	Watermelon (Charleston Gray)	cgywcgB138
Cucsa.102930	Watermelon (97103) v1	cgywmB132
Cucsa.102930	Cucurbita pepo (Zucchini)	cgycpeB0211
Cucsa.102930	Cucurbita pepo (Zucchini)	cgycpeB0215
Cucsa.102930	Cucurbita pepo (Zucchini)	cgycpeB0218
Cucsa.102930	Cucurbita pepo (Zucchini)	cgycpeB0223
Cucsa.102930	Cucurbita pepo (Zucchini)	cgycpeB0227
Cucsa.102930	Bottle gourd (USVL1VR-Ls)	cgylsiB129
Cucsa.102930	Melon (DHL92) v3.6.1	cgymedB125