ClCG01G017300 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG01G017300
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Late embryogenesis abundant protein group 8 protein
Location	CG_Chr01 : 31851664 .. 31851933 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAAGCGCGAGGCCGATCAGCCGCAGCGGCAACAAGAGGAGAGGAAAAGCGAAAGGGAAAAGGAGAGATCAGAAGGCATTCCGTTGCAGAGCAGTCCGTACGTGAATTATAAAGACTTGGAAGATTACAAAAACCAAGCCTACGGAACTCAAGGCCATCTTCAGCCCAAGCCCGGCCGTGGCGGCGGCGGTGGTCCCACCGACGCCCCCACTCTCTCCGGTGACGCCGTCGCTTCCTCGGTGATTAACCGCCAAGGAGTACCCTGA

mRNA sequence

ATGGATAAGCGCGAGGCCGATCAGCCGCAGCGGCAACAAGAGGAGAGGAAAAGCGAAAGGGAAAAGGAGAGATCAGAAGGCATTCCGTTGCAGAGCAGTCCGTACGTGAATTATAAAGACTTGGAAGATTACAAAAACCAAGCCTACGGAACTCAAGGCCATCTTCAGCCCAAGCCCGGCCGTGGCGGCGGCGGTGGTCCCACCGACGCCCCCACTCTCTCCGGTGACGCCGTCGCTTCCTCGGTGATTAACCGCCAAGGAGTACCCTGA

Coding sequence (CDS)

ATGGATAAGCGCGAGGCCGATCAGCCGCAGCGGCAACAAGAGGAGAGGAAAAGCGAAAGGGAAAAGGAGAGATCAGAAGGCATTCCGTTGCAGAGCAGTCCGTACGTGAATTATAAAGACTTGGAAGATTACAAAAACCAAGCCTACGGAACTCAAGGCCATCTTCAGCCCAAGCCCGGCCGTGGCGGCGGCGGTGGTCCCACCGACGCCCCCACTCTCTCCGGTGACGCCGTCGCTTCCTCGGTGATTAACCGCCAAGGAGTACCCTGA

Protein sequence

MDKREADQPQRQQEERKSEREKERSEGIPLQSSPYVNYKDLEDYKNQAYGTQGHLQPKPGRGGGGGPTDAPTLSGDAVASSVINRQGVP

Homology

[Close]

BLAST of ClCG01G017300 vs. TrEMBL
Match: A0A0A0KGG1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G493910 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 6.5e-32
Identity = 70/81 (86.42%), Postives = 75/81 (92.59%), Query Frame = 1


Query: 1  MDKREADQPQRQQEE-RKSEREKERSEGIPLQSSPYVNYKDLEDYKNQAYGTQGHLQPKP 60
          M+KREADQ Q Q +E RKSEREKERSE IPL+SSPYVNY+DLEDYKNQAYGTQGHLQPKP
Sbjct: 1  MEKREADQSQGQNKEIRKSEREKERSEEIPLESSPYVNYEDLEDYKNQAYGTQGHLQPKP 60

Query: 61 GRGGGGGPTDAPTLSGDAVAS 81
          GRGGGGGPTDAPTLSGDA A+
Sbjct: 61 GRGGGGGPTDAPTLSGDAAAT 81

[Close]

BLAST of ClCG01G017300 vs. TrEMBL
Match: V4SFD8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026786mg PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 5.1e-21
Identity = 54/95 (56.84%), Postives = 67/95 (70.53%), Query Frame = 1


Query: 3   KREADQPQRQQEERKSEREKERSEGIPLQSSPYVNYKDLEDYKNQAYGTQGHLQPKPGRG 62
           K+E +  +++ E  +S  EK+  EG+P++ SPYV YKDLEDYK Q YGT+GHL+P+ GRG
Sbjct: 26  KQEQETERKKSETERSTEEKKSLEGLPMKDSPYVKYKDLEDYKRQGYGTEGHLKPQTGRG 85

Query: 63  GGGGPTDAPTLSGDAVAS--------SVINRQGVP 90
           GG   TDAPTLSGDAVAS          INRQGVP
Sbjct: 86  GGA--TDAPTLSGDAVASGADVSGATDAINRQGVP 118

[Close]

BLAST of ClCG01G017300 vs. TrEMBL
Match: A0A0J8CCV2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g127730 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 4.4e-20
Identity = 50/83 (60.24%), Postives = 62/83 (74.70%), Query Frame = 1


Query: 10 QRQQEERKSEREKERSEGIPLQSSPYVNYKDLEDYKNQAYGTQGHLQPKPGRGGGGGPTD 69
          Q+ + E+K   E ++ EG+P+++SPYV YKDLEDYK Q YGTQGH++PKPGRG GG  TD
Sbjct: 8  QQSENEKKQSEEAKKLEGLPIETSPYVQYKDLEDYKQQGYGTQGHMEPKPGRGAGG--TD 67

Query: 70 APTLSG---DAVASSVINRQGVP 90
          APT SG   D  A+ VINR GVP
Sbjct: 68 APTPSGGVSDGSATDVINRLGVP 88

[Close]

BLAST of ClCG01G017300 vs. TrEMBL
Match: A0A0B2SB75_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_040949 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.0e-17
Identity = 50/97 (51.55%), Postives = 64/97 (65.98%), Query Frame = 1


Query: 1  MDKREADQPQRQQEERKSEREKERS-EGIPLQSSPYVNYKDLEDYKNQAYGTQGHLQPKP 60
          M+K++   P ++ + +  E  KE S EG+P++ SPYV YKDLEDYK Q YGTQGH +PK 
Sbjct: 1  MEKQQQQAPSKETKAQSDESVKESSTEGLPMEDSPYVKYKDLEDYKRQGYGTQGHQEPKT 60

Query: 61 GRGGGGGPTDAPTLSGDAV-------ASSVINRQGVP 90
          GRG G   T+APTLSG AV       A+  IN +GVP
Sbjct: 61 GRGAGA--TEAPTLSGAAVSSDAQVAATDAINSKGVP 95

[Close]

BLAST of ClCG01G017300 vs. TrEMBL
Match: Q9S7N8_SOYBN (Seed maturation protein PM21 OS=Glycine max GN=PM21 PE=2 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.0e-17
Identity = 50/97 (51.55%), Postives = 64/97 (65.98%), Query Frame = 1


Query: 1  MDKREADQPQRQQEERKSEREKERS-EGIPLQSSPYVNYKDLEDYKNQAYGTQGHLQPKP 60
          M+K++   P ++ + +  E  KE S EG+P++ SPYV YKDLEDYK Q YGTQGH +PK 
Sbjct: 1  MEKQQQQAPSKETKAQSDESVKESSTEGLPMEDSPYVKYKDLEDYKRQGYGTQGHQEPKT 60

Query: 61 GRGGGGGPTDAPTLSGDAV-------ASSVINRQGVP 90
          GRG G   T+APTLSG AV       A+  IN +GVP
Sbjct: 61 GRGAGA--TEAPTLSGAAVSSDAQVAATDAINSKGVP 95

[Close]

BLAST of ClCG01G017300 vs. TAIR10
Match: AT2G33690.1 (AT2G33690.1 Late embryogenesis abundant protein, group 6)

HSP 1 Score: 75.5 bits (184), Expect = 1.9e-14
Identity = 34/62 (54.84%), Postives = 41/62 (66.13%), Query Frame = 1


Query: 21 EKERSEGIPLQSSPYVNYKDLEDYKNQAYGTQGHLQPKPGRGGGGGPTDAPTLSGDAVAS 80
          + E  + +PL++SPY  Y+D+EDYK  AYGT GH   KPG   GGG TDAPT SGDA  S
Sbjct: 3  KSEEKQELPLETSPYTKYEDIEDYKKNAYGTSGHQDVKPGH--GGGTTDAPTPSGDAAPS 62

Query: 81 SV 83
          ++
Sbjct: 63 AI 62

[Close]

BLAST of ClCG01G017300 vs. TAIR10
Match: AT2G23110.1 (AT2G23110.1 Late embryogenesis abundant protein, group 6)

HSP 1 Score: 67.4 bits (163), Expect = 5.1e-12
Identity = 36/93 (38.71%), Postives = 52/93 (55.91%), Query Frame = 1


Query: 8  QPQRQQEERKSEREKERSEGIPLQSSPYVNYKDLEDYKNQAYGTQGHLQPKPGRGGGGGP 67
          + Q++    + E ++ +++ +    +PY++Y +LEDYK + YG QGH +PK G GGG   
Sbjct: 2  EDQKKPPTTEQEVKEVKNDDLESIKTPYLDYDNLEDYKMKGYGAQGHQEPKLGMGGGA-- 61

Query: 68 TDAPTLSG-----------DAVASSVINRQGVP 90
          TDAPT SG           D  ++  INRQGVP
Sbjct: 62 TDAPTPSGGLGRGGGAASTDLSSTDAINRQGVP 92

[Close]

BLAST of ClCG01G017300 vs. TAIR10
Match: AT2G23120.1 (AT2G23120.1 Late embryogenesis abundant protein, group 6)

HSP 1 Score: 61.2 bits (147), Expect = 3.6e-10
Identity = 34/67 (50.75%), Postives = 43/67 (64.18%), Query Frame = 1


Query: 15 ERKSEREKERSEGIPLQSSPYVNYKDLEDYKNQAYGTQGHLQPKPGRGGGGGPTDAPTLS 74
          E+K+E+ K+    +P  S PY+    LEDYK +AYG +GH +P PG GGG   TDAPT S
Sbjct: 15 EKKTEQVKDND--LPTDS-PYMATGTLEDYKLKAYGAEGHQEPTPGLGGGS--TDAPTPS 74

Query: 75 GDAVASS 82
          GDA A++
Sbjct: 75 GDAPAAT 76

[Close]

BLAST of ClCG01G017300 vs. NCBI nr
Match: gi|778718556|ref|XP_011657884.1| (PREDICTED: uncharacterized protein LOC105435909 [Cucumis sativus])

HSP 1 Score: 144.4 bits (363), Expect = 9.3e-32
Identity = 70/81 (86.42%), Postives = 75/81 (92.59%), Query Frame = 1


Query: 1  MDKREADQPQRQQEE-RKSEREKERSEGIPLQSSPYVNYKDLEDYKNQAYGTQGHLQPKP 60
          M+KREADQ Q Q +E RKSEREKERSE IPL+SSPYVNY+DLEDYKNQAYGTQGHLQPKP
Sbjct: 1  MEKREADQSQGQNKEIRKSEREKERSEEIPLESSPYVNYEDLEDYKNQAYGTQGHLQPKP 60

Query: 61 GRGGGGGPTDAPTLSGDAVAS 81
          GRGGGGGPTDAPTLSGDA A+
Sbjct: 61 GRGGGGGPTDAPTLSGDAAAT 81

[Close]

BLAST of ClCG01G017300 vs. NCBI nr
Match: gi|567866839|ref|XP_006426042.1| (hypothetical protein CICLE_v10026786mg [Citrus clementina])

HSP 1 Score: 108.2 bits (269), Expect = 7.4e-21
Identity = 54/95 (56.84%), Postives = 67/95 (70.53%), Query Frame = 1


Query: 3   KREADQPQRQQEERKSEREKERSEGIPLQSSPYVNYKDLEDYKNQAYGTQGHLQPKPGRG 62
           K+E +  +++ E  +S  EK+  EG+P++ SPYV YKDLEDYK Q YGT+GHL+P+ GRG
Sbjct: 26  KQEQETERKKSETERSTEEKKSLEGLPMKDSPYVKYKDLEDYKRQGYGTEGHLKPQTGRG 85

Query: 63  GGGGPTDAPTLSGDAVAS--------SVINRQGVP 90
           GG   TDAPTLSGDAVAS          INRQGVP
Sbjct: 86  GGA--TDAPTLSGDAVASGADVSGATDAINRQGVP 118

[Close]

BLAST of ClCG01G017300 vs. NCBI nr
Match: gi|568824226|ref|XP_006466503.1| (PREDICTED: uncharacterized protein LOC102616141 [Citrus sinensis])

HSP 1 Score: 107.5 bits (267), Expect = 1.3e-20
Identity = 54/95 (56.84%), Postives = 66/95 (69.47%), Query Frame = 1


Query: 3  KREADQPQRQQEERKSEREKERSEGIPLQSSPYVNYKDLEDYKNQAYGTQGHLQPKPGRG 62
          K+E +  ++  E  +S  EK+  EG+P++ SPYV YKDLEDYK Q YGT+GHL+P+ GRG
Sbjct: 4  KQEQETERKASETERSTEEKKSLEGLPMKDSPYVKYKDLEDYKRQGYGTEGHLKPQTGRG 63

Query: 63 GGGGPTDAPTLSGDAVAS--------SVINRQGVP 90
          GG   TDAPTLSGDAVAS          INRQGVP
Sbjct: 64 GGA--TDAPTLSGDAVASGADVSGATDAINRQGVP 96

[Close]

BLAST of ClCG01G017300 vs. NCBI nr
Match: gi|731337043|ref|XP_010679579.1| (PREDICTED: uncharacterized protein LOC104894915 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 105.1 bits (261), Expect = 6.2e-20
Identity = 50/83 (60.24%), Postives = 62/83 (74.70%), Query Frame = 1


Query: 10 QRQQEERKSEREKERSEGIPLQSSPYVNYKDLEDYKNQAYGTQGHLQPKPGRGGGGGPTD 69
          Q+ + E+K   E ++ EG+P+++SPYV YKDLEDYK Q YGTQGH++PKPGRG GG  TD
Sbjct: 8  QQSENEKKQSEEAKKLEGLPIETSPYVQYKDLEDYKQQGYGTQGHMEPKPGRGAGG--TD 67

Query: 70 APTLSG---DAVASSVINRQGVP 90
          APT SG   D  A+ VINR GVP
Sbjct: 68 APTPSGGVSDGSATDVINRLGVP 88

[Close]

BLAST of ClCG01G017300 vs. NCBI nr
Match: gi|1009166522|ref|XP_015901635.1| (PREDICTED: uncharacterized protein LOC107434664 [Ziziphus jujuba])

HSP 1 Score: 98.6 bits (244), Expect = 5.8e-18
Identity = 49/90 (54.44%), Postives = 59/90 (65.56%), Query Frame = 1


Query: 7  DQPQRQQEERKSEREKERSEGIPLQSSPYVNYKDLEDYKNQAYGTQGHLQPKPGRGGGGG 66
          +  Q  +E +    EK + EG+P+  SPYV YKDLEDYK Q YGTQGHLQPKPGR GG  
Sbjct: 2  ENKQEHRERKPENEEKGKYEGLPVNDSPYVQYKDLEDYKQQGYGTQGHLQPKPGRAGGS- 61

Query: 67 PTDAPTLSGDAV-------ASSVINRQGVP 90
           TDAPTLSG +V       A+  I+R G+P
Sbjct: 62 -TDAPTLSGGSVNSQAEVPAADAISRIGIP 89

The following BLAST results are available for this feature:

BLAST of ClCG01G017300 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KGG1_CUCSA	6.5e-32	86.42	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G493910 PE=4 SV=1	[more]
V4SFD8_9ROSI	5.1e-21	56.84	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026786mg PE=4 SV=1	[more]
A0A0J8CCV2_BETVU	4.4e-20	60.24	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g127730 PE=4 S...	[more]
A0A0B2SB75_GLYSO	2.0e-17	51.55	Uncharacterized protein OS=Glycine soja GN=glysoja_040949 PE=4 SV=1	[more]
Q9S7N8_SOYBN	2.0e-17	51.55	Seed maturation protein PM21 OS=Glycine max GN=PM21 PE=2 SV=1	[more]

BLAST of ClCG01G017300 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G33690.1	1.9e-14	54.84	Late embryogenesis abundant protein, group 6	[more]
AT2G23110.1	5.1e-12	38.71	Late embryogenesis abundant protein, group 6	[more]
AT2G23120.1	3.6e-10	50.75	Late embryogenesis abundant protein, group 6	[more]

BLAST of ClCG01G017300 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778718556\|ref\|XP_011657884.1\|	9.3e-32	86.42	PREDICTED: uncharacterized protein LOC105435909 [Cucumis sativus]	[more]
gi\|567866839\|ref\|XP_006426042.1\|	7.4e-21	56.84	hypothetical protein CICLE_v10026786mg [Citrus clementina]	[more]
gi\|568824226\|ref\|XP_006466503.1\|	1.3e-20	56.84	PREDICTED: uncharacterized protein LOC102616141 [Citrus sinensis]	[more]
gi\|731337043\|ref\|XP_010679579.1\|	6.2e-20	60.24	PREDICTED: uncharacterized protein LOC104894915 [Beta vulgaris subsp. vulgaris]	[more]
gi\|1009166522\|ref\|XP_015901635.1\|	5.8e-18	54.44	PREDICTED: uncharacterized protein LOC107434664 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR018930	LEA-18

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005829	cytosol
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG01G017300.1	ClCG01G017300.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018930	Late embryogenesis abundant protein, LEA-18	PFAM	PF10714	LEA_6	coord: 22..89 score: 3.3
None	No IPR available	PANTHER	PTHR33922	FAMILY NOT NAMED	coord: 1..89 score: 1.6
None	No IPR available	PANTHER	PTHR33922:SF4	EXPRESSED PROTEIN	coord: 1..89 score: 1.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG01G017300	Csa6G493910	Cucumber (Chinese Long) v2	cuwcgB432
ClCG01G017300	MELO3C007608	Melon (DHL92) v3.5.1	mewcgB514
ClCG01G017300	Cla014004	Watermelon (97103) v1	wcgwmB141
ClCG01G017300	Cla97C01G016480	Watermelon (97103) v2	wcgwmbB089
ClCG01G017300	CSPI06G28650	Wild cucumber (PI 183967)	cpiwcgB453
ClCG01G017300	Cucsa.102930	Cucumber (Gy14) v1	cgywcgB134
ClCG01G017300	CmaCh07G006670	Cucurbita maxima (Rimu)	cmawcgB754
ClCG01G017300	CmoCh07G006780	Cucurbita moschata (Rifu)	cmowcgB755
ClCG01G017300	Lsi01G009230	Bottle gourd (USVL1VR-Ls)	lsiwcgB127
ClCG01G017300	Cp4.1LG19g10790	Cucurbita pepo (Zucchini)	cpewcgB425
ClCG01G017300	CsGy6G028120	Cucumber (Gy14) v2	cgybwcgB399
ClCG01G017300	MELO3C007608.2	Melon (DHL92) v3.6.1	medwcgB509
ClCG01G017300	Carg18567	Silver-seed gourd	carwcgB0002
ClCG01G017300	CsaV3_6G043830	Cucumber (Chinese Long) v3	cucwcgB455

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG01G017300	Silver-seed gourd	carwcgB0173
ClCG01G017300	Silver-seed gourd	carwcgB0397
ClCG01G017300	Cucumber (Chinese Long) v3	cucwcgB128
ClCG01G017300	Cucumber (Chinese Long) v3	cucwcgB133
ClCG01G017300	Watermelon (97103) v2	wcgwmbB121
ClCG01G017300	Wax gourd	wcgwgoB217
ClCG01G017300	Wax gourd	wcgwgoB223
ClCG01G017300	Watermelon (Charleston Gray)	wcgwcgB112
ClCG01G017300	Cucumber (Gy14) v1	cgywcgB670
ClCG01G017300	Cucurbita maxima (Rimu)	cmawcgB153
ClCG01G017300	Cucurbita maxima (Rimu)	cmawcgB478
ClCG01G017300	Cucurbita maxima (Rimu)	cmawcgB520
ClCG01G017300	Cucurbita maxima (Rimu)	cmawcgB579
ClCG01G017300	Cucurbita maxima (Rimu)	cmawcgB693
ClCG01G017300	Cucurbita moschata (Rifu)	cmowcgB139
ClCG01G017300	Cucurbita moschata (Rifu)	cmowcgB477
ClCG01G017300	Cucurbita moschata (Rifu)	cmowcgB518
ClCG01G017300	Cucurbita moschata (Rifu)	cmowcgB575
ClCG01G017300	Cucurbita moschata (Rifu)	cmowcgB699
ClCG01G017300	Wild cucumber (PI 183967)	cpiwcgB121
ClCG01G017300	Cucumber (Chinese Long) v2	cuwcgB114
ClCG01G017300	Melon (DHL92) v3.5.1	mewcgB278
ClCG01G017300	Watermelon (97103) v1	wcgwmB120
ClCG01G017300	Cucurbita pepo (Zucchini)	cpewcgB061
ClCG01G017300	Cucurbita pepo (Zucchini)	cpewcgB642
ClCG01G017300	Cucurbita pepo (Zucchini)	cpewcgB730
ClCG01G017300	Bottle gourd (USVL1VR-Ls)	lsiwcgB425
ClCG01G017300	Cucumber (Gy14) v2	cgybwcgB111
ClCG01G017300	Melon (DHL92) v3.6.1	medwcgB268