Csa6G493910 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G493910
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Late embryogenesis abundant protein, group 6; contains IPR018930 (Late embryogenesis abundant protein, LEA-18)
Location	Chr6 : 23826654 .. 23827121 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAGCGGGAGGCCGATCAGTCGCAGGGACAAAACAAGGAGATCAGGAAAAGCGAAAGGGAAAAGGAGAGATCAGAGGAAATTCCGTTGGAGAGCAGTCCGTACGTGAATTATGAAGACTTGGAAGATTACAAAAATCAAGCCTACGGAACACAAGGCCATCTTCAGCCCAAGCCCGGCCGTGGCGGAGGCGGTGGCCCAACCGACGCCCCCACTCTCTCCGGCGACGCCGCCGCGACACGTCGGTGATTAACCGCCAAGGAGTACCCTGAGAAGACATTCGCTGGCGCTTTCTTTGGCCGTTCTGTTTTATTAAGGAATATTTGTTTTGCTGTAGGCTGAGTCTTGTTAATGTGTAACCTTACAATGGGTAAGGTAATGAATGAAAACAGTTGGAATAATCGGAATGGTATTATTAAAAAATTGATGACACTTACTAAATAATGAAGAGCAATATGTCGGTGT

mRNA sequence

ATGGAGAAGCGGGAGGCCGATCAGTCGCAGGGACAAAACAAGGAGATCAGGAAAAGCGAAAGGGAAAAGGAGAGATCAGAGGAAATTCCGTTGGAGAGCAGTCCGTACGTGAATTATGAAGACTTGGAAGATTACAAAAATCAAGCCTACGGAACACAAGGCCATCTTCAGCCCAAGCCCGGCCGTGGCGGAGGCGGTGGCCCAACCGACGCCCCCACTCTCTCCGGCGACGCCGCCGCGACACGTCGGTGA

Coding sequence (CDS)

ATGGAGAAGCGGGAGGCCGATCAGTCGCAGGGACAAAACAAGGAGATCAGGAAAAGCGAAAGGGAAAAGGAGAGATCAGAGGAAATTCCGTTGGAGAGCAGTCCGTACGTGAATTATGAAGACTTGGAAGATTACAAAAATCAAGCCTACGGAACACAAGGCCATCTTCAGCCCAAGCCCGGCCGTGGCGGAGGCGGTGGCCCAACCGACGCCCCCACTCTCTCCGGCGACGCCGCCGCGACACGTCGGTGA

Protein sequence

MEKREADQSQGQNKEIRKSEREKERSEEIPLESSPYVNYEDLEDYKNQAYGTQGHLQPKPGRGGGGGPTDAPTLSGDAAATRR*

Homology

[Close]

BLAST of Csa6G493910 vs. TrEMBL
Match: A0A0A0KGG1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G493910 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 1.6e-40
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 1


Query: 1  MEKREADQSQGQNKEIRKSEREKERSEEIPLESSPYVNYEDLEDYKNQAYGTQGHLQPKP 60
          MEKREADQSQGQNKEIRKSEREKERSEEIPLESSPYVNYEDLEDYKNQAYGTQGHLQPKP
Sbjct: 1  MEKREADQSQGQNKEIRKSEREKERSEEIPLESSPYVNYEDLEDYKNQAYGTQGHLQPKP 60

Query: 61 GRGGGGGPTDAPTLSGDAAATRR 84
          GRGGGGGPTDAPTLSGDAAATRR
Sbjct: 61 GRGGGGGPTDAPTLSGDAAATRR 83

[Close]

BLAST of Csa6G493910 vs. TrEMBL
Match: V4SFD8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026786mg PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.1e-17
Identity = 44/81 (54.32%), Postives = 60/81 (74.07%), Query Frame = 1


Query: 1   MEKREADQSQGQNKEIRKSEREKERSEEIPLESSPYVNYEDLEDYKNQAYGTQGHLQPKP 60
           MEK++  +++ +  E  +S  EK+  E +P++ SPYV Y+DLEDYK Q YGT+GHL+P+ 
Sbjct: 23  MEKKQEQETERKKSETERSTEEKKSLEGLPMKDSPYVKYKDLEDYKRQGYGTEGHLKPQT 82

Query: 61  GRGGGGGPTDAPTLSGDAAAT 82
           GRGGG   TDAPTLSGDA A+
Sbjct: 83  GRGGGA--TDAPTLSGDAVAS 101

[Close]

BLAST of Csa6G493910 vs. TrEMBL
Match: A0A0J8CCV2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g127730 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.8e-15
Identity = 46/79 (58.23%), Postives = 58/79 (73.42%), Query Frame = 1


Query: 12 QNKEIRKSEREKERSEE------IPLESSPYVNYEDLEDYKNQAYGTQGHLQPKPGRGGG 71
          +N   ++SE EK++SEE      +P+E+SPYV Y+DLEDYK Q YGTQGH++PKPGRG G
Sbjct: 3  KNSNNQQSENEKKQSEEAKKLEGLPIETSPYVQYKDLEDYKQQGYGTQGHMEPKPGRGAG 62

Query: 72 GGPTDAPTLSG---DAAAT 82
          G  TDAPT SG   D +AT
Sbjct: 63 G--TDAPTPSGGVSDGSAT 79

[Close]

BLAST of Csa6G493910 vs. TrEMBL
Match: A0A067K721_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12502 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 6.8e-15
Identity = 41/65 (63.08%), Postives = 50/65 (76.92%), Query Frame = 1


Query: 12 QNKEIRKSEREKERSEEIPLESSPYVNYEDLEDYKNQAYGTQGHLQPKPGRGGGGGPTDA 71
          Q  E R+ + +KE+ E +P+E SPY+ Y+DLEDYK + YGTQGHLQPKPGRG G   TDA
Sbjct: 4  QATESREEQEKKEKLEGLPVEDSPYLQYKDLEDYKLKGYGTQGHLQPKPGRGAGA--TDA 63

Query: 72 PTLSG 77
          PTLSG
Sbjct: 64 PTLSG 66

[Close]

BLAST of Csa6G493910 vs. TrEMBL
Match: F6I6V2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0122g00820 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 8.9e-15
Identity = 41/70 (58.57%), Postives = 53/70 (75.71%), Query Frame = 1


Query: 14 KEIRKSEREKERSEE-------IPLESSPYVNYEDLEDYKNQAYGTQGHLQPKPGRGGGG 73
          +++RK   E+ER+EE       +P+ESSPY+ Y DLEDYK Q YGT+GHL+PKP +GGGG
Sbjct: 6  EQLRKKTEEEERAEEKASKLRGLPMESSPYLKYTDLEDYKRQGYGTEGHLEPKPNQGGGG 65

Query: 74 GPTDAPTLSG 77
            TDAPTL+G
Sbjct: 66 --TDAPTLAG 73

[Close]

BLAST of Csa6G493910 vs. TAIR10
Match: AT2G33690.1 (AT2G33690.1 Late embryogenesis abundant protein, group 6)

HSP 1 Score: 79.7 bits (195), Expect = 9.4e-16
Identity = 37/58 (63.79%), Postives = 40/58 (68.97%), Query Frame = 1


Query: 22 EKERSEEIPLESSPYVNYEDLEDYKNQAYGTQGHLQPKPGRGGGGGPTDAPTLSGDAA 80
          + E  +E+PLE+SPY  YED+EDYK  AYGT GH   KPG   GGG TDAPT SGDAA
Sbjct: 3  KSEEKQELPLETSPYTKYEDIEDYKKNAYGTSGHQDVKPGH--GGGTTDAPTPSGDAA 58

[Close]

BLAST of Csa6G493910 vs. TAIR10
Match: AT2G23120.1 (AT2G23120.1 Late embryogenesis abundant protein, group 6)

HSP 1 Score: 61.6 bits (148), Expect = 2.6e-10
Identity = 33/76 (43.42%), Postives = 44/76 (57.89%), Query Frame = 1


Query: 5  EADQSQGQNKEIRKSEREKERSEEIPLESSPYVNYEDLEDYKNQAYGTQGHLQPKPGRGG 64
          EA ++        + + E+ +  ++P +S PY+    LEDYK +AYG +GH +P PG GG
Sbjct: 2  EAGKTPPTTTTTTEKKTEQVKDNDLPTDS-PYMATGTLEDYKLKAYGAEGHQEPTPGLGG 61

Query: 65 GGGPTDAPTLSGDAAA 81
          G   TDAPT SGDA A
Sbjct: 62 GS--TDAPTPSGDAPA 74

[Close]

BLAST of Csa6G493910 vs. TAIR10
Match: AT2G23110.1 (AT2G23110.1 Late embryogenesis abundant protein, group 6)

HSP 1 Score: 60.1 bits (144), Expect = 7.7e-10
Identity = 27/59 (45.76%), Postives = 40/59 (67.80%), Query Frame = 1


Query: 18 KSEREKERSEEIPLESSPYVNYEDLEDYKNQAYGTQGHLQPKPGRGGGGGPTDAPTLSG 77
          + E ++ +++++    +PY++Y++LEDYK + YG QGH +PK G GGG   TDAPT SG
Sbjct: 11 EQEVKEVKNDDLESIKTPYLDYDNLEDYKMKGYGAQGHQEPKLGMGGGA--TDAPTPSG 67

[Close]

BLAST of Csa6G493910 vs. NCBI nr
Match: gi|778718556|ref|XP_011657884.1| (PREDICTED: uncharacterized protein LOC105435909 [Cucumis sativus])

HSP 1 Score: 172.9 bits (437), Expect = 2.3e-40
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 1


Query: 1  MEKREADQSQGQNKEIRKSEREKERSEEIPLESSPYVNYEDLEDYKNQAYGTQGHLQPKP 60
          MEKREADQSQGQNKEIRKSEREKERSEEIPLESSPYVNYEDLEDYKNQAYGTQGHLQPKP
Sbjct: 1  MEKREADQSQGQNKEIRKSEREKERSEEIPLESSPYVNYEDLEDYKNQAYGTQGHLQPKP 60

Query: 61 GRGGGGGPTDAPTLSGDAAATRR 84
          GRGGGGGPTDAPTLSGDAAATRR
Sbjct: 61 GRGGGGGPTDAPTLSGDAAATRR 83

[Close]

BLAST of Csa6G493910 vs. NCBI nr
Match: gi|567866839|ref|XP_006426042.1| (hypothetical protein CICLE_v10026786mg [Citrus clementina])

HSP 1 Score: 97.1 bits (240), Expect = 1.6e-17
Identity = 44/81 (54.32%), Postives = 60/81 (74.07%), Query Frame = 1


Query: 1   MEKREADQSQGQNKEIRKSEREKERSEEIPLESSPYVNYEDLEDYKNQAYGTQGHLQPKP 60
           MEK++  +++ +  E  +S  EK+  E +P++ SPYV Y+DLEDYK Q YGT+GHL+P+ 
Sbjct: 23  MEKKQEQETERKKSETERSTEEKKSLEGLPMKDSPYVKYKDLEDYKRQGYGTEGHLKPQT 82

Query: 61  GRGGGGGPTDAPTLSGDAAAT 82
           GRGGG   TDAPTLSGDA A+
Sbjct: 83  GRGGGA--TDAPTLSGDAVAS 101

[Close]

BLAST of Csa6G493910 vs. NCBI nr
Match: gi|568824226|ref|XP_006466503.1| (PREDICTED: uncharacterized protein LOC102616141 [Citrus sinensis])

HSP 1 Score: 96.3 bits (238), Expect = 2.7e-17
Identity = 44/81 (54.32%), Postives = 60/81 (74.07%), Query Frame = 1


Query: 1  MEKREADQSQGQNKEIRKSEREKERSEEIPLESSPYVNYEDLEDYKNQAYGTQGHLQPKP 60
          MEK++  +++ +  E  +S  EK+  E +P++ SPYV Y+DLEDYK Q YGT+GHL+P+ 
Sbjct: 1  MEKKQEQETERKASETERSTEEKKSLEGLPMKDSPYVKYKDLEDYKRQGYGTEGHLKPQT 60

Query: 61 GRGGGGGPTDAPTLSGDAAAT 82
          GRGGG   TDAPTLSGDA A+
Sbjct: 61 GRGGGA--TDAPTLSGDAVAS 79

[Close]

BLAST of Csa6G493910 vs. NCBI nr
Match: gi|720068635|ref|XP_010277173.1| (PREDICTED: uncharacterized protein LOC104611696 [Nelumbo nucifera])

HSP 1 Score: 90.9 bits (224), Expect = 1.2e-15
Identity = 45/81 (55.56%), Postives = 59/81 (72.84%), Query Frame = 1


Query: 9  SQGQNKEIRKSE---REKERS---EEIPLESSPYVNYEDLEDYKNQAYGTQGHLQPKPGR 68
          S+ + + +RK+E    EK++S   EE+P+ESSPYVNY DLEDYK + YGT+GH +PKPGR
Sbjct: 2  SRSEEQTVRKTESAEEEKDKSPGGEELPVESSPYVNYSDLEDYKRRGYGTEGHQEPKPGR 61

Query: 69 GGGGGPTDAPTLSGDAAATRR 84
          G G   TDAPTLSG   + R+
Sbjct: 62 GAGA--TDAPTLSGSGLSERK 80

[Close]

BLAST of Csa6G493910 vs. NCBI nr
Match: gi|731337043|ref|XP_010679579.1| (PREDICTED: uncharacterized protein LOC104894915 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 89.7 bits (221), Expect = 2.6e-15
Identity = 46/79 (58.23%), Postives = 58/79 (73.42%), Query Frame = 1


Query: 12 QNKEIRKSEREKERSEE------IPLESSPYVNYEDLEDYKNQAYGTQGHLQPKPGRGGG 71
          +N   ++SE EK++SEE      +P+E+SPYV Y+DLEDYK Q YGTQGH++PKPGRG G
Sbjct: 3  KNSNNQQSENEKKQSEEAKKLEGLPIETSPYVQYKDLEDYKQQGYGTQGHMEPKPGRGAG 62

Query: 72 GGPTDAPTLSG---DAAAT 82
          G  TDAPT SG   D +AT
Sbjct: 63 G--TDAPTPSGGVSDGSAT 79

The following BLAST results are available for this feature:

BLAST of Csa6G493910 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KGG1_CUCSA	1.6e-40	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G493910 PE=4 SV=1	[more]
V4SFD8_9ROSI	1.1e-17	54.32	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026786mg PE=4 SV=1	[more]
A0A0J8CCV2_BETVU	1.8e-15	58.23	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g127730 PE=4 S...	[more]
A0A067K721_JATCU	6.8e-15	63.08	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12502 PE=4 SV=1	[more]
F6I6V2_VITVI	8.9e-15	58.57	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0122g00820 PE=4 SV=...	[more]

BLAST of Csa6G493910 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G33690.1	9.4e-16	63.79	Late embryogenesis abundant protein, group 6	[more]
AT2G23120.1	2.6e-10	43.42	Late embryogenesis abundant protein, group 6	[more]
AT2G23110.1	7.7e-10	45.76	Late embryogenesis abundant protein, group 6	[more]

BLAST of Csa6G493910 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778718556\|ref\|XP_011657884.1\|	2.3e-40	100.00	PREDICTED: uncharacterized protein LOC105435909 [Cucumis sativus]	[more]
gi\|567866839\|ref\|XP_006426042.1\|	1.6e-17	54.32	hypothetical protein CICLE_v10026786mg [Citrus clementina]	[more]
gi\|568824226\|ref\|XP_006466503.1\|	2.7e-17	54.32	PREDICTED: uncharacterized protein LOC102616141 [Citrus sinensis]	[more]
gi\|720068635\|ref\|XP_010277173.1\|	1.2e-15	55.56	PREDICTED: uncharacterized protein LOC104611696 [Nelumbo nucifera]	[more]
gi\|731337043\|ref\|XP_010679579.1\|	2.6e-15	58.23	PREDICTED: uncharacterized protein LOC104894915 [Beta vulgaris subsp. vulgaris]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR018930	LEA-18

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU113738	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa6G493910.1	Csa6G493910.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU113738	CU113738	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018930	Late embryogenesis abundant protein, LEA-18	PFAM	PF10714	LEA_6	coord: 23..81 score: 2.6
None	No IPR available	unknown	Coil	Coil	coord: 9..29 scor
None	No IPR available	PANTHER	PTHR33922	FAMILY NOT NAMED	coord: 1..78 score: 5.7
None	No IPR available	PANTHER	PTHR33922:SF4	EXPRESSED PROTEIN	coord: 1..78 score: 5.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa6G493910	Cla014004	Watermelon (97103) v1	cuwmB500
Csa6G493910	MELO3C007608	Melon (DHL92) v3.5.1	cumeB503
Csa6G493910	ClCG01G017300	Watermelon (Charleston Gray)	cuwcgB432
Csa6G493910	Lsi01G009230	Bottle gourd (USVL1VR-Ls)	culsiB434
Csa6G493910	MELO3C007608.2	Melon (DHL92) v3.6.1	cumedB483
Csa6G493910	Cla97C01G016480	Watermelon (97103) v2	cuwmbB412
Csa6G493910	CSPI06G28650	Wild cucumber (PI 183967)	cpicuB313
Csa6G493910	Cucsa.102930	Cucumber (Gy14) v1	cgycuB121
Csa6G493910	CmaCh07G006670	Cucurbita maxima (Rimu)	cmacuB877
Csa6G493910	CmoCh07G006780	Cucurbita moschata (Rifu)	cmocuB865
Csa6G493910	Cp4.1LG19g10790	Cucurbita pepo (Zucchini)	cpecuB503
Csa6G493910	CsGy6G028120	Cucumber (Gy14) v2	cgybcuB281
Csa6G493910	Carg18567	Silver-seed gourd	carcuB0003

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa6G493910	Wax gourd	cuwgoB577
Csa6G493910	Wax gourd	cuwgoB621
Csa6G493910	Cucumber (Chinese Long) v2	cucuB072
Csa6G493910	Cucumber (Chinese Long) v2	cucuB071
Csa6G493910	Cucumber (Chinese Long) v2	cucuB143
Csa6G493910	Cucumber (Gy14) v1	cgycuB552
Csa6G493910	Cucurbita maxima (Rimu)	cmacuB194
Csa6G493910	Cucurbita maxima (Rimu)	cmacuB347
Csa6G493910	Cucurbita maxima (Rimu)	cmacuB626
Csa6G493910	Cucurbita maxima (Rimu)	cmacuB681
Csa6G493910	Cucurbita maxima (Rimu)	cmacuB775
Csa6G493910	Cucurbita maxima (Rimu)	cmacuB809
Csa6G493910	Cucurbita moschata (Rifu)	cmocuB176
Csa6G493910	Cucurbita moschata (Rifu)	cmocuB337
Csa6G493910	Cucurbita moschata (Rifu)	cmocuB548
Csa6G493910	Cucurbita moschata (Rifu)	cmocuB617
Csa6G493910	Cucurbita moschata (Rifu)	cmocuB670
Csa6G493910	Cucurbita moschata (Rifu)	cmocuB766
Csa6G493910	Cucurbita moschata (Rifu)	cmocuB801
Csa6G493910	Melon (DHL92) v3.5.1	cumeB441
Csa6G493910	Melon (DHL92) v3.5.1	cumeB470
Csa6G493910	Watermelon (Charleston Gray)	cuwcgB503
Csa6G493910	Watermelon (97103) v1	cuwmB461
Csa6G493910	Cucurbita pepo (Zucchini)	cpecuB085
Csa6G493910	Cucurbita pepo (Zucchini)	cpecuB229
Csa6G493910	Cucurbita pepo (Zucchini)	cpecuB468
Csa6G493910	Cucurbita pepo (Zucchini)	cpecuB763
Csa6G493910	Bottle gourd (USVL1VR-Ls)	culsiB425
Csa6G493910	Bottle gourd (USVL1VR-Ls)	culsiB474
Csa6G493910	Cucumber (Gy14) v2	cgybcuB082
Csa6G493910	Melon (DHL92) v3.6.1	cumedB421
Csa6G493910	Melon (DHL92) v3.6.1	cumedB452
Csa6G493910	Silver-seed gourd	carcuB0205
Csa6G493910	Silver-seed gourd	carcuB0409
Csa6G493910	Silver-seed gourd	carcuB0441
Csa6G493910	Watermelon (97103) v2	cuwmbB494