CmoCh07G006780 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh07G006780
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionLate embryogenesis abundant protein group 8 protein, putative
LocationCmo_Chr07 : 3059050 .. 3059316 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATAAGCGCGAGGCCGATCAGCCGAAGCGGCAACAACCGGAAAGGAAGAGCGGAAGTGAAGAGGAGAGATTGGAGGGCATTCCGTTGGAGACCAGTCCGTACGTGAATTACAAGGACTTGGAAGATTACAAAAACCAAGCCTACGGAGCCCAAGGCCATCTCGAGTCCAAACCCAGCCGCCGCGGTGGCGGTGGATCCACCGACGCTCCCACTCTCTCCGGCGACGCCGTTTCGTCGGTGATCAACCGCCAAGGAGTGCCCTGA

mRNA sequence

ATGGATAAGCGCGAGGCCGATCAGCCGAAGCGGCAACAACCGGAAAGGAAGAGCGGAAGTGAAGAGGAGAGATTGGAGGGCATTCCGTTGGAGACCAGTCCGTACGTGAATTACAAGGACTTGGAAGATTACAAAAACCAAGCCTACGGAGCCCAAGGCCATCTCGAGTCCAAACCCAGCCGCCGCGGTGGCGGTGGATCCACCGACGCTCCCACTCTCTCCGGCGACGCCGTTTCGTCGGTGATCAACCGCCAAGGAGTGCCCTGA

Coding sequence (CDS)

ATGGATAAGCGCGAGGCCGATCAGCCGAAGCGGCAACAACCGGAAAGGAAGAGCGGAAGTGAAGAGGAGAGATTGGAGGGCATTCCGTTGGAGACCAGTCCGTACGTGAATTACAAGGACTTGGAAGATTACAAAAACCAAGCCTACGGAGCCCAAGGCCATCTCGAGTCCAAACCCAGCCGCCGCGGTGGCGGTGGATCCACCGACGCTCCCACTCTCTCCGGCGACGCCGTTTCGTCGGTGATCAACCGCCAAGGAGTGCCCTGA
Homology
[Close]
BLAST of CmoCh07G006780 vs. TrEMBL
Match: A0A0A0KGG1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G493910 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 8.7e-21
Identity = 58/81 (71.60%), Postives = 66/81 (81.48%), Query Frame = 1 

Query: 1  MDKREADQPKRQQPE-RKSGSEEERLEGIPLETSPYVNYKDLEDYKNQAYGAQGHLESKP 60
          M+KREADQ + Q  E RKS  E+ER E IPLE+SPYVNY+DLEDYKNQAYG QGHL+ KP
Sbjct: 1  MEKREADQSQGQNKEIRKSEREKERSEEIPLESSPYVNYEDLEDYKNQAYGTQGHLQPKP 60

Query: 61 SRRGGGGSTDAPTLSGDAVSS 81
           R GGGG TDAPTLSGDA ++
Sbjct: 61 GRGGGGGPTDAPTLSGDAAAT 81

[Close]
BLAST of CmoCh07G006780 vs. TrEMBL
Match: V4SFD8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026786mg PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 4.9e-16
Identity = 52/98 (53.06%), Postives = 69/98 (70.41%), Query Frame = 1 

Query: 1   MDKREADQPKRQQPERKSGSEEER-LEGIPLETSPYVNYKDLEDYKNQAYGAQGHLESKP 60
           M+K++  + +R++ E +  +EE++ LEG+P++ SPYV YKDLEDYK Q YG +GHL  KP
Sbjct: 23  MEKKQEQETERKKSETERSTEEKKSLEGLPMKDSPYVKYKDLEDYKRQGYGTEGHL--KP 82

Query: 61  SRRGGGGSTDAPTLSGDAVSS---------VINRQGVP 89
               GGG+TDAPTLSGDAV+S          INRQGVP
Sbjct: 83  QTGRGGGATDAPTLSGDAVASGADVSGATDAINRQGVP 118

[Close]
BLAST of CmoCh07G006780 vs. TrEMBL
Match: A0A0J8CCV2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g127730 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 5.4e-15
Identity = 50/92 (54.35%), Postives = 62/92 (67.39%), Query Frame = 1 

Query: 1  MDKREADQPKRQQPERKSGSEEERLEGIPLETSPYVNYKDLEDYKNQAYGAQGHLESKPS 60
          M+K   +Q  + + E+K   E ++LEG+P+ETSPYV YKDLEDYK Q YG QGH+E KP 
Sbjct: 1  MEKNSNNQ--QSENEKKQSEEAKKLEGLPIETSPYVQYKDLEDYKQQGYGTQGHMEPKPG 60

Query: 61 RRGGGGSTDAPTLSG----DAVSSVINRQGVP 89
          R  G G TDAPT SG     + + VINR GVP
Sbjct: 61 R--GAGGTDAPTPSGGVSDGSATDVINRLGVP 88

[Close]
BLAST of CmoCh07G006780 vs. TrEMBL
Match: A0A059B0J2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H02278 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 7.9e-14
Identity = 44/80 (55.00%), Postives = 60/80 (75.00%), Query Frame = 1 

Query: 1  MDKREADQPKRQQPERKSGSEEERLEGIPLETSPYVNYKDLEDYKNQAYGAQGHLESKPS 60
          M+K+EA + + ++ + + G ++  LEG+P++ SPY+ YKDLEDYK Q YGAQGHLE KP 
Sbjct: 1  MEKQEAHRQEGKRGQAEEGKKQPSLEGLPIKDSPYMQYKDLEDYKLQGYGAQGHLEPKPG 60

Query: 61 RRGGGGSTDAPTLSGDAVSS 81
          R  G G+TDAPT+ G AVSS
Sbjct: 61 R--GAGTTDAPTMPGSAVSS 78

[Close]
BLAST of CmoCh07G006780 vs. TrEMBL
Match: I1K2B4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_05G103100 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.0e-13
Identity = 50/95 (52.63%), Postives = 62/95 (65.26%), Query Frame = 1 

Query: 1  MDKREADQPKRQQPERKSGSEEERLEGIPLETSPYVNYKDLEDYKNQAYGAQGHLESKPS 60
          M+K++  QP ++   +    +E   EG+P+E SPYV YKDLEDYK Q YGAQGH E KP 
Sbjct: 1  MEKQQ--QPSKETKPQNESGKESSTEGLPMEDSPYVKYKDLEDYKRQGYGAQGHQEPKPG 60

Query: 61 RRGGGGSTDAPTLSGDAVSS--------VINRQGV 88
          R  G G+T+APTLSG AVSS        VIN +GV
Sbjct: 61 R--GAGATEAPTLSGAAVSSDAQATATDVINSKGV 91

[Close]
BLAST of CmoCh07G006780 vs. TAIR10
Match: AT2G33690.1 (AT2G33690.1 Late embryogenesis abundant protein, group 6)

HSP 1 Score: 72.8 bits (177), Expect = 1.2e-13
Identity = 36/64 (56.25%), Postives = 44/64 (68.75%), Query Frame = 1 

Query: 20 SEEERLEGIPLETSPYVNYKDLEDYKNQAYGAQGHLESKPSRRGGGGSTDAPTLSGDAVS 79
          S+ E  + +PLETSPY  Y+D+EDYK  AYG  GH + KP    GGG+TDAPT SGDA  
Sbjct: 2  SKSEEKQELPLETSPYTKYEDIEDYKKNAYGTSGHQDVKPGH--GGGTTDAPTPSGDAAP 61

Query: 80 SVIN 84
          S I+
Sbjct: 62 SAID 63

[Close]
BLAST of CmoCh07G006780 vs. TAIR10
Match: AT2G23110.1 (AT2G23110.1 Late embryogenesis abundant protein, group 6)

HSP 1 Score: 53.9 bits (128), Expect = 5.8e-08
Identity = 35/93 (37.63%), Postives = 52/93 (55.91%), Query Frame = 1 

Query: 8  QPKRQQPERKSGSEEERLEGIPLETSPYVNYKDLEDYKNQAYGAQGHLESKPSRRGGGGS 67
          + +++ P  +   +E + + +    +PY++Y +LEDYK + YGAQGH E  P    GGG+
Sbjct: 2  EDQKKPPTTEQEVKEVKNDDLESIKTPYLDYDNLEDYKMKGYGAQGHQE--PKLGMGGGA 61

Query: 68 TDAPTLSGD------------AVSSVINRQGVP 89
          TDAPT SG             + +  INRQGVP
Sbjct: 62 TDAPTPSGGLGRGGGAASTDLSSTDAINRQGVP 92

[Close]
BLAST of CmoCh07G006780 vs. TAIR10
Match: AT2G23120.1 (AT2G23120.1 Late embryogenesis abundant protein, group 6)

HSP 1 Score: 52.8 bits (125), Expect = 1.3e-07
Identity = 32/69 (46.38%), Postives = 42/69 (60.87%), Query Frame = 1 

Query: 20 SEEERLEGIPLETSPYVNYKDLEDYKNQAYGAQGHLESKPSRRGGGGSTDAPTLSGDAVS 79
          +E+ +   +P + SPY+    LEDYK +AYGA+GH E  P    GGGSTDAPT SGDA +
Sbjct: 18 TEQVKDNDLPTD-SPYMATGTLEDYKLKAYGAEGHQEPTPGL--GGGSTDAPTPSGDAPA 77

Query: 80 SVINRQGVP 89
          +       P
Sbjct: 78 ATTTDAKAP 83

[Close]
BLAST of CmoCh07G006780 vs. NCBI nr
Match: gi|778718556|ref|XP_011657884.1| (PREDICTED: uncharacterized protein LOC105435909 [Cucumis sativus])

HSP 1 Score: 107.5 bits (267), Expect = 1.2e-20
Identity = 58/81 (71.60%), Postives = 66/81 (81.48%), Query Frame = 1 

Query: 1  MDKREADQPKRQQPE-RKSGSEEERLEGIPLETSPYVNYKDLEDYKNQAYGAQGHLESKP 60
          M+KREADQ + Q  E RKS  E+ER E IPLE+SPYVNY+DLEDYKNQAYG QGHL+ KP
Sbjct: 1  MEKREADQSQGQNKEIRKSEREKERSEEIPLESSPYVNYEDLEDYKNQAYGTQGHLQPKP 60

Query: 61 SRRGGGGSTDAPTLSGDAVSS 81
           R GGGG TDAPTLSGDA ++
Sbjct: 61 GRGGGGGPTDAPTLSGDAAAT 81

[Close]
BLAST of CmoCh07G006780 vs. NCBI nr
Match: gi|567866839|ref|XP_006426042.1| (hypothetical protein CICLE_v10026786mg [Citrus clementina])

HSP 1 Score: 91.7 bits (226), Expect = 7.1e-16
Identity = 52/98 (53.06%), Postives = 69/98 (70.41%), Query Frame = 1 

Query: 1   MDKREADQPKRQQPERKSGSEEER-LEGIPLETSPYVNYKDLEDYKNQAYGAQGHLESKP 60
           M+K++  + +R++ E +  +EE++ LEG+P++ SPYV YKDLEDYK Q YG +GHL  KP
Sbjct: 23  MEKKQEQETERKKSETERSTEEKKSLEGLPMKDSPYVKYKDLEDYKRQGYGTEGHL--KP 82

Query: 61  SRRGGGGSTDAPTLSGDAVSS---------VINRQGVP 89
               GGG+TDAPTLSGDAV+S          INRQGVP
Sbjct: 83  QTGRGGGATDAPTLSGDAVASGADVSGATDAINRQGVP 118

[Close]
BLAST of CmoCh07G006780 vs. NCBI nr
Match: gi|568824226|ref|XP_006466503.1| (PREDICTED: uncharacterized protein LOC102616141 [Citrus sinensis])

HSP 1 Score: 90.9 bits (224), Expect = 1.2e-15
Identity = 52/98 (53.06%), Postives = 68/98 (69.39%), Query Frame = 1 

Query: 1  MDKREADQPKRQQPERKSGSEEER-LEGIPLETSPYVNYKDLEDYKNQAYGAQGHLESKP 60
          M+K++  + +R+  E +  +EE++ LEG+P++ SPYV YKDLEDYK Q YG +GHL  KP
Sbjct: 1  MEKKQEQETERKASETERSTEEKKSLEGLPMKDSPYVKYKDLEDYKRQGYGTEGHL--KP 60

Query: 61 SRRGGGGSTDAPTLSGDAVSS---------VINRQGVP 89
              GGG+TDAPTLSGDAV+S          INRQGVP
Sbjct: 61 QTGRGGGATDAPTLSGDAVASGADVSGATDAINRQGVP 96

[Close]
BLAST of CmoCh07G006780 vs. NCBI nr
Match: gi|731337043|ref|XP_010679579.1| (PREDICTED: uncharacterized protein LOC104894915 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 88.2 bits (217), Expect = 7.8e-15
Identity = 50/92 (54.35%), Postives = 62/92 (67.39%), Query Frame = 1 

Query: 1  MDKREADQPKRQQPERKSGSEEERLEGIPLETSPYVNYKDLEDYKNQAYGAQGHLESKPS 60
          M+K   +Q  + + E+K   E ++LEG+P+ETSPYV YKDLEDYK Q YG QGH+E KP 
Sbjct: 1  MEKNSNNQ--QSENEKKQSEEAKKLEGLPIETSPYVQYKDLEDYKQQGYGTQGHMEPKPG 60

Query: 61 RRGGGGSTDAPTLSG----DAVSSVINRQGVP 89
          R  G G TDAPT SG     + + VINR GVP
Sbjct: 61 R--GAGGTDAPTPSGGVSDGSATDVINRLGVP 88

[Close]
BLAST of CmoCh07G006780 vs. NCBI nr
Match: gi|702439216|ref|XP_010070633.1| (PREDICTED: uncharacterized protein LOC104457383 [Eucalyptus grandis])

HSP 1 Score: 84.3 bits (207), Expect = 1.1e-13
Identity = 44/80 (55.00%), Postives = 60/80 (75.00%), Query Frame = 1 

Query: 1  MDKREADQPKRQQPERKSGSEEERLEGIPLETSPYVNYKDLEDYKNQAYGAQGHLESKPS 60
          M+K+EA + + ++ + + G ++  LEG+P++ SPY+ YKDLEDYK Q YGAQGHLE KP 
Sbjct: 1  MEKQEAHRQEGKRGQAEEGKKQPSLEGLPIKDSPYMQYKDLEDYKLQGYGAQGHLEPKPG 60

Query: 61 RRGGGGSTDAPTLSGDAVSS 81
          R  G G+TDAPT+ G AVSS
Sbjct: 61 R--GAGTTDAPTMPGSAVSS 78

The following BLAST results are available for this feature:
BLAST of CmoCh07G006780 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh07G006780 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KGG1_CUCSA8.7e-2171.60Uncharacterized protein OS=Cucumis sativus GN=Csa_6G493910 PE=4 SV=1[more]
V4SFD8_9ROSI4.9e-1653.06Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026786mg PE=4 SV=1[more]
A0A0J8CCV2_BETVU5.4e-1554.35Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g127730 PE=4 S... [more]
A0A059B0J2_EUCGR7.9e-1455.00Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H02278 PE=4 SV=1[more]
I1K2B4_SOYBN1.0e-1352.63Uncharacterized protein OS=Glycine max GN=GLYMA_05G103100 PE=4 SV=1[more]
BLAST of CmoCh07G006780 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G33690.11.2e-1356.25 Late embryogenesis abundant protein, group 6[more]
AT2G23110.15.8e-0837.63 Late embryogenesis abundant protein, group 6[more]
AT2G23120.11.3e-0746.38 Late embryogenesis abundant protein, group 6[more]
BLAST of CmoCh07G006780 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778718556|ref|XP_011657884.1|1.2e-2071.60PREDICTED: uncharacterized protein LOC105435909 [Cucumis sativus][more]
gi|567866839|ref|XP_006426042.1|7.1e-1653.06hypothetical protein CICLE_v10026786mg [Citrus clementina][more]
gi|568824226|ref|XP_006466503.1|1.2e-1553.06PREDICTED: uncharacterized protein LOC102616141 [Citrus sinensis][more]
gi|731337043|ref|XP_010679579.1|7.8e-1554.35PREDICTED: uncharacterized protein LOC104894915 [Beta vulgaris subsp. vulgaris][more]
gi|702439216|ref|XP_010070633.1|1.1e-1355.00PREDICTED: uncharacterized protein LOC104457383 [Eucalyptus grandis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR018930LEA-18
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh07G006780.1CmoCh07G006780.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018930Late embryogenesis abundant protein, LEA-18PFAMPF10714LEA_6coord: 22..87
score: 1.1
NoneNo IPR availablePANTHERPTHR33922FAMILY NOT NAMEDcoord: 1..88
score: 1.1
NoneNo IPR availablePANTHERPTHR33922:SF4EXPRESSED PROTEINcoord: 1..88
score: 1.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh07G006780Cucsa.102930Cucumber (Gy14) v1cgycmoB0233
CmoCh07G006780CmaCh07G006670Cucurbita maxima (Rimu)cmacmoB875
CmoCh07G006780Cla014004Watermelon (97103) v1cmowmB816
CmoCh07G006780Csa6G493910Cucumber (Chinese Long) v2cmocuB865
CmoCh07G006780MELO3C007608Melon (DHL92) v3.5.1cmomeB793
CmoCh07G006780ClCG01G017300Watermelon (Charleston Gray)cmowcgB755
CmoCh07G006780CSPI06G28650Wild cucumber (PI 183967)cmocpiB873
CmoCh07G006780Lsi01G009230Bottle gourd (USVL1VR-Ls)cmolsiB774
CmoCh07G006780Cp4.1LG19g10790Cucurbita pepo (Zucchini)cmocpeB817
CmoCh07G006780MELO3C007608.2Melon (DHL92) v3.6.1cmomedB896
CmoCh07G006780CsaV3_6G043830Cucumber (Chinese Long) v3cmocucB1019
CmoCh07G006780Cla97C01G016480Watermelon (97103) v2cmowmbB849
CmoCh07G006780Bhi03G000761Wax gourdcmowgoB1063
CmoCh07G006780CsGy6G028120Cucumber (Gy14) v2cgybcmoB843
CmoCh07G006780Carg18567Silver-seed gourdcarcmoB0005
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh07G006780Bottle gourd (USVL1VR-Ls)cmolsiB789
CmoCh07G006780Bottle gourd (USVL1VR-Ls)cmolsiB795
CmoCh07G006780Cucumber (Gy14) v2cgybcmoB249
CmoCh07G006780Cucumber (Gy14) v2cgybcmoB543
CmoCh07G006780Melon (DHL92) v3.6.1cmomedB878
CmoCh07G006780Melon (DHL92) v3.6.1cmomedB885
CmoCh07G006780Silver-seed gourdcarcmoB0516
CmoCh07G006780Silver-seed gourdcarcmoB0554
CmoCh07G006780Silver-seed gourdcarcmoB1048
CmoCh07G006780Cucumber (Chinese Long) v3cmocucB0990
CmoCh07G006780Cucumber (Chinese Long) v3cmocucB1006
CmoCh07G006780Watermelon (97103) v2cmowmbB872
CmoCh07G006780Watermelon (97103) v2cmowmbB876
CmoCh07G006780Wax gourdcmowgoB1044
CmoCh07G006780Wax gourdcmowgoB1078
CmoCh07G006780Cucurbita moschata (Rifu)cmocmoB037
CmoCh07G006780Cucurbita moschata (Rifu)cmocmoB164
CmoCh07G006780Cucurbita moschata (Rifu)cmocmoB296
CmoCh07G006780Cucurbita moschata (Rifu)cmocmoB376
CmoCh07G006780Cucurbita moschata (Rifu)cmocmoB455
CmoCh07G006780Cucurbita moschata (Rifu)cmocmoB477
CmoCh07G006780Cucumber (Gy14) v1cgycmoB0970
CmoCh07G006780Cucumber (Gy14) v1cgycmoB1095
CmoCh07G006780Cucurbita maxima (Rimu)cmacmoB065
CmoCh07G006780Cucurbita maxima (Rimu)cmacmoB204
CmoCh07G006780Cucurbita maxima (Rimu)cmacmoB667
CmoCh07G006780Wild cucumber (PI 183967)cmocpiB847
CmoCh07G006780Wild cucumber (PI 183967)cmocpiB849
CmoCh07G006780Wild cucumber (PI 183967)cmocpiB864
CmoCh07G006780Cucumber (Chinese Long) v2cmocuB837
CmoCh07G006780Cucumber (Chinese Long) v2cmocuB839
CmoCh07G006780Cucumber (Chinese Long) v2cmocuB856
CmoCh07G006780Melon (DHL92) v3.5.1cmomeB773
CmoCh07G006780Melon (DHL92) v3.5.1cmomeB781
CmoCh07G006780Watermelon (Charleston Gray)cmowcgB774
CmoCh07G006780Watermelon (Charleston Gray)cmowcgB777
CmoCh07G006780Watermelon (97103) v1cmowmB807
CmoCh07G006780Watermelon (97103) v1cmowmB813
CmoCh07G006780Cucurbita pepo (Zucchini)cmocpeB806
CmoCh07G006780Cucurbita pepo (Zucchini)cmocpeB815
CmoCh07G006780Cucurbita pepo (Zucchini)cmocpeB827