Lsi01G009230 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi01G009230
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Late embryogenesis abundant protein group 8 protein, putative
Location	chr01 : 7463607 .. 7463876 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAAGCGCGAGACCGATCAGCCGCAACAGCAACAAGAGGAGAGGAAAAGCGAAAGGGAAAAGGAGAGATCAGAGGGCATTCCGTTGGAGAGCAGCCCGTACGTGAATTATAAAGATTTGGAAGATTACAAAAACCAAGCCTACGGAACCCAAGGCCATCTTCAGCCCAAGCCCGGCCGTGGCGGCGGCGGTGGTCCCACCGACGCCCCCACTCTCTCCGGTGACGCCGTCGCTTCGTCGGTGATTAACCGCCAAGGAGCACCCTGA

mRNA sequence

ATGGATAAGCGCGAGACCGATCAGCCGCAACAGCAACAAGAGGAGAGGAAAAGCGAAAGGGAAAAGGAGAGATCAGAGGGCATTCCGTTGGAGAGCAGCCCGTACGTGAATTATAAAGATTTGGAAGATTACAAAAACCAAGCCTACGGAACCCAAGGCCATCTTCAGCCCAAGCCCGGCCGTGGCGGCGGCGGTGGTCCCACCGACGCCCCCACTCTCTCCGGTGACGCCGTCGCTTCGTCGGTGATTAACCGCCAAGGAGCACCCTGA

Coding sequence (CDS)

ATGGATAAGCGCGAGACCGATCAGCCGCAACAGCAACAAGAGGAGAGGAAAAGCGAAAGGGAAAAGGAGAGATCAGAGGGCATTCCGTTGGAGAGCAGCCCGTACGTGAATTATAAAGATTTGGAAGATTACAAAAACCAAGCCTACGGAACCCAAGGCCATCTTCAGCCCAAGCCCGGCCGTGGCGGCGGCGGTGGTCCCACCGACGCCCCCACTCTCTCCGGTGACGCCGTCGCTTCGTCGGTGATTAACCGCCAAGGAGCACCCTGA

Protein sequence

MDKRETDQPQQQQEERKSEREKERSEGIPLESSPYVNYKDLEDYKNQAYGTQGHLQPKPGRGGGGGPTDAPTLSGDAVASSVINRQGAP

Homology

[Close]

BLAST of Lsi01G009230 vs. TrEMBL
Match: A0A0A0KGG1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G493910 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 4.8e-27
Identity = 70/81 (86.42%), Postives = 74/81 (91.36%), Query Frame = 1


Query: 1  MDKRETDQPQQQQEE-RKSEREKERSEGIPLESSPYVNYKDLEDYKNQAYGTQGHLQPKP 60
          M+KRE DQ Q Q +E RKSEREKERSE IPLESSPYVNY+DLEDYKNQAYGTQGHLQPKP
Sbjct: 1  MEKREADQSQGQNKEIRKSEREKERSEEIPLESSPYVNYEDLEDYKNQAYGTQGHLQPKP 60

Query: 61 GRGGGGGPTDAPTLSGDAVAS 81
          GRGGGGGPTDAPTLSGDA A+
Sbjct: 61 GRGGGGGPTDAPTLSGDAAAT 81

[Close]

BLAST of Lsi01G009230 vs. TrEMBL
Match: A0A0J8CCV2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g127730 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 4.5e-17
Identity = 51/83 (61.45%), Postives = 61/83 (73.49%), Query Frame = 1


Query: 10 QQQQEERKSEREKERSEGIPLESSPYVNYKDLEDYKNQAYGTQGHLQPKPGRGGGGGPTD 69
          QQ + E+K   E ++ EG+P+E+SPYV YKDLEDYK Q YGTQGH++PKPGRG GG  TD
Sbjct: 8  QQSENEKKQSEEAKKLEGLPIETSPYVQYKDLEDYKQQGYGTQGHMEPKPGRGAGG--TD 67

Query: 70 APTLSG---DAVASSVINRQGAP 90
          APT SG   D  A+ VINR G P
Sbjct: 68 APTPSGGVSDGSATDVINRLGVP 88

[Close]

BLAST of Lsi01G009230 vs. TrEMBL
Match: V4SFD8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026786mg PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 3.8e-16
Identity = 53/95 (55.79%), Postives = 66/95 (69.47%), Query Frame = 1


Query: 3   KRETDQPQQQQEERKSEREKERSEGIPLESSPYVNYKDLEDYKNQAYGTQGHLQPKPGRG 62
           K+E +  +++ E  +S  EK+  EG+P++ SPYV YKDLEDYK Q YGT+GHL+P+ GRG
Sbjct: 26  KQEQETERKKSETERSTEEKKSLEGLPMKDSPYVKYKDLEDYKRQGYGTEGHLKPQTGRG 85

Query: 63  GGGGPTDAPTLSGDAVAS--------SVINRQGAP 90
           GG   TDAPTLSGDAVAS          INRQG P
Sbjct: 86  GGA--TDAPTLSGDAVASGADVSGATDAINRQGVP 118

[Close]

BLAST of Lsi01G009230 vs. TrEMBL
Match: A0A067K721_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12502 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 8.0e-14
Identity = 44/69 (63.77%), Postives = 54/69 (78.26%), Query Frame = 1


Query: 10 QQQQEERKSEREKERSEGIPLESSPYVNYKDLEDYKNQAYGTQGHLQPKPGRGGGGGPTD 69
          +Q  E R+ + +KE+ EG+P+E SPY+ YKDLEDYK + YGTQGHLQPKPGRG G   TD
Sbjct: 3  KQATESREEQEKKEKLEGLPVEDSPYLQYKDLEDYKLKGYGTQGHLQPKPGRGAGA--TD 62

Query: 70 APTLSGDAV 79
          APTLSG +V
Sbjct: 63 APTLSGGSV 69

[Close]

BLAST of Lsi01G009230 vs. TrEMBL
Match: A0A061DGT1_THECC (Late embryogenesis abundant protein group 8 protein, putative OS=Theobroma cacao GN=TCM_000747 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.4e-13
Identity = 49/92 (53.26%), Postives = 63/92 (68.48%), Query Frame = 1


Query: 8  QPQQQQEERKSEREKERSE---GIPLESSPYVNYKDLEDYKNQAYGTQGHLQPKPGRGGG 67
          + +Q+  E K++R++E+ E   G+P+++SPYV  KDLEDYK Q YGT+GHLQPKPGRG  
Sbjct: 2  EKKQEHVENKADRKEEKKESLEGLPVKNSPYVKNKDLEDYKRQGYGTEGHLQPKPGRGAA 61

Query: 68 GGPTDAPTLSG-------DAVASSVINRQGAP 90
             TDAPTLSG       D  A+  INRQG P
Sbjct: 62 SS-TDAPTLSGANLSSERDIAATDTINRQGFP 92

[Close]

BLAST of Lsi01G009230 vs. TAIR10
Match: AT2G33690.1 (AT2G33690.1 Late embryogenesis abundant protein, group 6)

HSP 1 Score: 71.2 bits (173), Expect = 3.5e-13
Identity = 35/62 (56.45%), Postives = 43/62 (69.35%), Query Frame = 1


Query: 21 EKERSEGIPLESSPYVNYKDLEDYKNQAYGTQGHLQPKPGRGGGGGPTDAPTLSGDAVAS 80
          + E  + +PLE+SPY  Y+D+EDYK  AYGT GH   KPG   GGG TDAPT SGDA  S
Sbjct: 3  KSEEKQELPLETSPYTKYEDIEDYKKNAYGTSGHQDVKPGH--GGGTTDAPTPSGDAAPS 62

Query: 81 SV 83
          ++
Sbjct: 63 AI 62

[Close]

BLAST of Lsi01G009230 vs. TAIR10
Match: AT2G23110.1 (AT2G23110.1 Late embryogenesis abundant protein, group 6)

HSP 1 Score: 55.8 bits (133), Expect = 1.5e-08
Identity = 39/93 (41.94%), Postives = 54/93 (58.06%), Query Frame = 1


Query: 10 QQQQEERKSEREKERSEGIPLES--SPYVNYKDLEDYKNQAYGTQGHLQPKPGRGGGGGP 69
          + Q++   +E+E +  +   LES  +PY++Y +LEDYK + YG QGH +PK G GGG   
Sbjct: 2  EDQKKPPTTEQEVKEVKNDDLESIKTPYLDYDNLEDYKMKGYGAQGHQEPKLGMGGGA-- 61

Query: 70 TDAPTLSG-----------DAVASSVINRQGAP 90
          TDAPT SG           D  ++  INRQG P
Sbjct: 62 TDAPTPSGGLGRGGGAASTDLSSTDAINRQGVP 92

[Close]

BLAST of Lsi01G009230 vs. TAIR10
Match: AT2G23120.1 (AT2G23120.1 Late embryogenesis abundant protein, group 6)

HSP 1 Score: 48.1 bits (113), Expect = 3.2e-06
Identity = 36/81 (44.44%), Postives = 50/81 (61.73%), Query Frame = 1


Query: 1  MDKRETDQPQQQQEERKSEREKERSEGIPLESSPYVNYKDLEDYKNQAYGTQGHLQPKPG 60
          M+  +T        E+K+E+ K+    +P +S PY+    LEDYK +AYG +GH +P PG
Sbjct: 1  MEAGKTPPTTTTTTEKKTEQVKDND--LPTDS-PYMATGTLEDYKLKAYGAEGHQEPTPG 60

Query: 61 RGGGGGPTDAPTLSGDAVASS 82
           GGG   TDAPT SGDA A++
Sbjct: 61 LGGGS--TDAPTPSGDAPAAT 76

[Close]

BLAST of Lsi01G009230 vs. NCBI nr
Match: gi|778718556|ref|XP_011657884.1| (PREDICTED: uncharacterized protein LOC105435909 [Cucumis sativus])

HSP 1 Score: 128.3 bits (321), Expect = 6.9e-27
Identity = 70/81 (86.42%), Postives = 74/81 (91.36%), Query Frame = 1


Query: 1  MDKRETDQPQQQQEE-RKSEREKERSEGIPLESSPYVNYKDLEDYKNQAYGTQGHLQPKP 60
          M+KRE DQ Q Q +E RKSEREKERSE IPLESSPYVNY+DLEDYKNQAYGTQGHLQPKP
Sbjct: 1  MEKREADQSQGQNKEIRKSEREKERSEEIPLESSPYVNYEDLEDYKNQAYGTQGHLQPKP 60

Query: 61 GRGGGGGPTDAPTLSGDAVAS 81
          GRGGGGGPTDAPTLSGDA A+
Sbjct: 61 GRGGGGGPTDAPTLSGDAAAT 81

[Close]

BLAST of Lsi01G009230 vs. NCBI nr
Match: gi|731337043|ref|XP_010679579.1| (PREDICTED: uncharacterized protein LOC104894915 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 95.1 bits (235), Expect = 6.5e-17
Identity = 51/83 (61.45%), Postives = 61/83 (73.49%), Query Frame = 1


Query: 10 QQQQEERKSEREKERSEGIPLESSPYVNYKDLEDYKNQAYGTQGHLQPKPGRGGGGGPTD 69
          QQ + E+K   E ++ EG+P+E+SPYV YKDLEDYK Q YGTQGH++PKPGRG GG  TD
Sbjct: 8  QQSENEKKQSEEAKKLEGLPIETSPYVQYKDLEDYKQQGYGTQGHMEPKPGRGAGG--TD 67

Query: 70 APTLSG---DAVASSVINRQGAP 90
          APT SG   D  A+ VINR G P
Sbjct: 68 APTPSGGVSDGSATDVINRLGVP 88

[Close]

BLAST of Lsi01G009230 vs. NCBI nr
Match: gi|567866839|ref|XP_006426042.1| (hypothetical protein CICLE_v10026786mg [Citrus clementina])

HSP 1 Score: 92.0 bits (227), Expect = 5.5e-16
Identity = 53/95 (55.79%), Postives = 66/95 (69.47%), Query Frame = 1


Query: 3   KRETDQPQQQQEERKSEREKERSEGIPLESSPYVNYKDLEDYKNQAYGTQGHLQPKPGRG 62
           K+E +  +++ E  +S  EK+  EG+P++ SPYV YKDLEDYK Q YGT+GHL+P+ GRG
Sbjct: 26  KQEQETERKKSETERSTEEKKSLEGLPMKDSPYVKYKDLEDYKRQGYGTEGHLKPQTGRG 85

Query: 63  GGGGPTDAPTLSGDAVAS--------SVINRQGAP 90
           GG   TDAPTLSGDAVAS          INRQG P
Sbjct: 86  GGA--TDAPTLSGDAVASGADVSGATDAINRQGVP 118

[Close]

BLAST of Lsi01G009230 vs. NCBI nr
Match: gi|568824226|ref|XP_006466503.1| (PREDICTED: uncharacterized protein LOC102616141 [Citrus sinensis])

HSP 1 Score: 91.3 bits (225), Expect = 9.3e-16
Identity = 53/95 (55.79%), Postives = 65/95 (68.42%), Query Frame = 1


Query: 3  KRETDQPQQQQEERKSEREKERSEGIPLESSPYVNYKDLEDYKNQAYGTQGHLQPKPGRG 62
          K+E +  ++  E  +S  EK+  EG+P++ SPYV YKDLEDYK Q YGT+GHL+P+ GRG
Sbjct: 4  KQEQETERKASETERSTEEKKSLEGLPMKDSPYVKYKDLEDYKRQGYGTEGHLKPQTGRG 63

Query: 63 GGGGPTDAPTLSGDAVAS--------SVINRQGAP 90
          GG   TDAPTLSGDAVAS          INRQG P
Sbjct: 64 GGA--TDAPTLSGDAVASGADVSGATDAINRQGVP 96

[Close]

BLAST of Lsi01G009230 vs. NCBI nr
Match: gi|1009166522|ref|XP_015901635.1| (PREDICTED: uncharacterized protein LOC107434664 [Ziziphus jujuba])

HSP 1 Score: 86.7 bits (213), Expect = 2.3e-14
Identity = 52/88 (59.09%), Postives = 60/88 (68.18%), Query Frame = 1


Query: 10 QQQQEERKSERE-KERSEGIPLESSPYVNYKDLEDYKNQAYGTQGHLQPKPGRGGGGGPT 69
          +Q+  ERK E E K + EG+P+  SPYV YKDLEDYK Q YGTQGHLQPKPGR GG   T
Sbjct: 4  KQEHRERKPENEEKGKYEGLPVNDSPYVQYKDLEDYKQQGYGTQGHLQPKPGRAGGS--T 63

Query: 70 DAPTLSGDAV-------ASSVINRQGAP 90
          DAPTLSG +V       A+  I+R G P
Sbjct: 64 DAPTLSGGSVNSQAEVPAADAISRIGIP 89

The following BLAST results are available for this feature:

BLAST of Lsi01G009230 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi01G009230 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KGG1_CUCSA	4.8e-27	86.42	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G493910 PE=4 SV=1	[more]
A0A0J8CCV2_BETVU	4.5e-17	61.45	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g127730 PE=4 S...	[more]
V4SFD8_9ROSI	3.8e-16	55.79	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026786mg PE=4 SV=1	[more]
A0A067K721_JATCU	8.0e-14	63.77	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12502 PE=4 SV=1	[more]
A0A061DGT1_THECC	1.4e-13	53.26	Late embryogenesis abundant protein group 8 protein, putative OS=Theobroma cacao...	[more]

BLAST of Lsi01G009230 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G33690.1	3.5e-13	56.45	Late embryogenesis abundant protein, group 6	[more]
AT2G23110.1	1.5e-08	41.94	Late embryogenesis abundant protein, group 6	[more]
AT2G23120.1	3.2e-06	44.44	Late embryogenesis abundant protein, group 6	[more]

BLAST of Lsi01G009230 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778718556\|ref\|XP_011657884.1\|	6.9e-27	86.42	PREDICTED: uncharacterized protein LOC105435909 [Cucumis sativus]	[more]
gi\|731337043\|ref\|XP_010679579.1\|	6.5e-17	61.45	PREDICTED: uncharacterized protein LOC104894915 [Beta vulgaris subsp. vulgaris]	[more]
gi\|567866839\|ref\|XP_006426042.1\|	5.5e-16	55.79	hypothetical protein CICLE_v10026786mg [Citrus clementina]	[more]
gi\|568824226\|ref\|XP_006466503.1\|	9.3e-16	55.79	PREDICTED: uncharacterized protein LOC102616141 [Citrus sinensis]	[more]
gi\|1009166522\|ref\|XP_015901635.1\|	2.3e-14	59.09	PREDICTED: uncharacterized protein LOC107434664 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR018930	LEA-18

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G009230.1	Lsi01G009230.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018930	Late embryogenesis abundant protein, LEA-18	PFAM	PF10714	LEA_6	coord: 22..81 score: 8.6
None	No IPR available	PANTHER	PTHR33922	FAMILY NOT NAMED	coord: 1..89 score: 1.9
None	No IPR available	PANTHER	PTHR33922:SF4	EXPRESSED PROTEIN	coord: 1..89 score: 1.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi01G009230	Csa6G493910	Cucumber (Chinese Long) v2	culsiB434
Lsi01G009230	CSPI06G28650	Wild cucumber (PI 183967)	cpilsiB439
Lsi01G009230	Cucsa.102930	Cucumber (Gy14) v1	cgylsiB125
Lsi01G009230	CmaCh07G006670	Cucurbita maxima (Rimu)	cmalsiB786
Lsi01G009230	CmoCh07G006780	Cucurbita moschata (Rifu)	cmolsiB774
Lsi01G009230	Cla014004	Watermelon (97103) v1	lsiwmB144
Lsi01G009230	MELO3C007608	Melon (DHL92) v3.5.1	lsimeB156
Lsi01G009230	ClCG01G017300	Watermelon (Charleston Gray)	lsiwcgB127
Lsi01G009230	MELO3C007608.2	Melon (DHL92) v3.6.1	lsimedB163
Lsi01G009230	Cla97C01G016480	Watermelon (97103) v2	lsiwmbB115
Lsi01G009230	Bhi03G000761	Wax gourd	lsiwgoB180
Lsi01G009230	Cp4.1LG19g10790	Cucurbita pepo (Zucchini)	cpelsiB396
Lsi01G009230	CsGy6G028120	Cucumber (Gy14) v2	cgyblsiB398
Lsi01G009230	Carg18567	Silver-seed gourd	carlsiB001
Lsi01G009230	CsaV3_6G043830	Cucumber (Chinese Long) v3	cuclsiB462

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi01G009230	Wax gourd	lsiwgoB156
Lsi01G009230	Bottle gourd (USVL1VR-Ls)	lsilsiB030
Lsi01G009230	Bottle gourd (USVL1VR-Ls)	lsilsiB087
Lsi01G009230	Cucumber (Gy14) v1	cgylsiB634
Lsi01G009230	Cucurbita maxima (Rimu)	cmalsiB165
Lsi01G009230	Cucurbita maxima (Rimu)	cmalsiB304
Lsi01G009230	Cucurbita maxima (Rimu)	cmalsiB519
Lsi01G009230	Cucurbita maxima (Rimu)	cmalsiB567
Lsi01G009230	Cucurbita maxima (Rimu)	cmalsiB597
Lsi01G009230	Cucurbita maxima (Rimu)	cmalsiB640
Lsi01G009230	Cucurbita maxima (Rimu)	cmalsiB717
Lsi01G009230	Cucurbita moschata (Rifu)	cmolsiB004
Lsi01G009230	Cucurbita moschata (Rifu)	cmolsiB154
Lsi01G009230	Cucurbita moschata (Rifu)	cmolsiB291
Lsi01G009230	Cucurbita moschata (Rifu)	cmolsiB504
Lsi01G009230	Cucurbita moschata (Rifu)	cmolsiB582
Lsi01G009230	Cucurbita moschata (Rifu)	cmolsiB627
Lsi01G009230	Cucurbita pepo (Zucchini)	cpelsiB054
Lsi01G009230	Cucurbita pepo (Zucchini)	cpelsiB325
Lsi01G009230	Cucurbita pepo (Zucchini)	cpelsiB610
Lsi01G009230	Wild cucumber (PI 183967)	cpilsiB103
Lsi01G009230	Cucumber (Chinese Long) v2	culsiB105
Lsi01G009230	Melon (DHL92) v3.5.1	lsimeB135
Lsi01G009230	Melon (DHL92) v3.5.1	lsimeB147
Lsi01G009230	Watermelon (Charleston Gray)	lsiwcgB153
Lsi01G009230	Watermelon (97103) v1	lsiwmB133
Lsi01G009230	Cucumber (Gy14) v2	cgyblsiB095
Lsi01G009230	Melon (DHL92) v3.6.1	lsimedB137
Lsi01G009230	Melon (DHL92) v3.6.1	lsimedB142
Lsi01G009230	Silver-seed gourd	carlsiB161
Lsi01G009230	Silver-seed gourd	carlsiB340
Lsi01G009230	Silver-seed gourd	carlsiB364
Lsi01G009230	Cucumber (Chinese Long) v3	cuclsiB113
Lsi01G009230	Cucumber (Chinese Long) v3	cuclsiB118
Lsi01G009230	Watermelon (97103) v2	lsiwmbB150